<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:55:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1" stop="1257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150" g_stop="957" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150" e_stop="957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGCGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCGTTCATCTATCTGGTGCTTTATGTAGACGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAGGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTGCCAATATCCACCTCACTGCCATGTTCGCTCCACAGTCAGAAGAACAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGTTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGATACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315220" ref_strand="+" ref_description="SGN-E315220 [cTOA-24-P22]">
      <seq>tttagtcgaactactgaactcaatcacttgttatttactctacaattttctatcaaggctcgtcctacgtcctacctaccctaacataatcgtcacgacccaaaattatcaagaaaatggatcaattgcaaccacaacaaccagttcaagtttatcctaacaatccaaacaatttccctaaccaaccaaacaatatgccaatgactcaatcctcttcttctcataactcatccaatggttcatttgtgagtgtttttgttgtcctagctattgtttttgtcatatctgttattgcttgtgttgtgggacgtttatgtagcaagaaaagcaatggagctaataaggtgaagaaaagtagtcatggtcaaccacaaaaacaaaaagagggaaaacataataataataataagcacaatgagtttcacaataaaagaggaggaggggatatagaatttggatttgataagaaaattgcaagttctaaagtggctgcagcacatggagataatcattataaggggtctaagcctcataagaatactaatggaggagttagattttctgataatcatattgatttcaagcttggtccatgaaaactagttgtgttcatagaggaactctctctatgtactaattactttggtagtagttttaattttattttgttaaatttttaagtttttattaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="6607" stop="7900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6907" g_stop="7600" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E315220" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6907" e_stop="7600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTCGAACTACTGAACTCAATCACTTGTTATTTACTCTACAATTTTCTATCAAGGCTCGTCCTACGTCCTACCTACCCTAACATAATCGTCACGACCCAAAATTATCAAGAAAATGGATCAATTGCAACCACAACAACCAGTTCAAGTTTATCCTAACAATCCAAACAATTTCCCTAACCAACCAAACAATATGCCAATGACTCAATCCTCTTCTTCTCATAACTCATCCAATGGTTCATTTGTGAGTGTTTTTGTTGTCCTAGCTATTGTTTTTGTCATATCTGTTATTGCTTGTGTTGTGGGACGTTTATGTAGCAAGAAAAGCAATGGAGCTAATAAGGTGAAGAAAAGTAGTCATGGTCAACCACAAAAACAAAAAGAGGGAAAACATAATAATAATAATAAGCACAATGAGTTTCACAATAAAAGAGGAGGAGGGGATATAGAATTTGGATTTGATAAGAAAATTGCAAGTTCTAAAGTGGCTGCAGCACATGGAGATAATCATTATAAGGGGTCTAAGCCTCATAAGAATACTAATGGAGGAGTTAGATTTTCTGATAATCATATTGATTTCAAGCTTGGTCCATGAAAACTAGTTGTGTTCATAGAGGAACTCTCTCTATGTACTAATTACTTTGGTAGTAGTTTTAATTTTATTTTGTTAAATTTTTAAGTTTTTATTAACAT</genome_strand>
        <mrna_strand>TTTAGTCGAACTACTGAACTCAATCACTTGTTATTTACTCTACAATTTTCTATCAAGGCTCGTCCTACGTCCTACCTACCCTAACATAATCGTCACGACCCAAAATTATCAAGAAAATGGATCAATTGCAACCACAACAACCAGTTCAAGTTTATCCTAACAATCCAAACAATTTCCCTAACCAACCAAACAATATGCCAATGACTCAATCCTCTTCTTCTCATAACTCATCCAATGGTTCATTTGTGAGTGTTTTTGTTGTCCTAGCTATTGTTTTTGTCATATCTGTTATTGCTTGTGTTGTGGGACGTTTATGTAGCAAGAAAAGCAATGGAGCTAATAAGGTGAAGAAAAGTAGTCATGGTCAACCACAAAAACAAAAAGAGGGAAAACATAATAATAATAATAAGCACAATGAGTTTCACAATAAAAGAGGAGGAGGGGATATAGAATTTGGATTTGATAAGAAAATTGCAAGTTCTAAAGTGGCTGCAGCACATGGAGATAATCATTATAAGGGGTCTAAGCCTCATAAGAATACTAATGGAGGAGTTAGATTTTCTGATAATCATATTGATTTCAAGCTTGGTCCATGAAAACTAGTTGTGTTCATAGAGGAACTCTCTCTATGTACTAATTACTTTGGTAGTAGTTTTAATTTTATTTTGTTAAATTTTTAAGTTTTTATTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710086" ref_strand="+" ref_description="SGN-E710086 [FA54AF10]">
      <seq>gggaaaaattgaaagcgcctgaaatcggagtgccaccgggaatcataacaacgtttccggttcaagcagtttgagaaatcagttgccggagaacgaacggagagattcatcggaaccctataccgaaacaatttgcagtggcaccatggctaaatccggagcagatgagaagattctcagctacaacgatgtcgttcttcggcgatcagatttggacattctcaatggtccttattatctcaatgaccgcatcattgagttctattttagctatctcagctcactctttccatctgacgacatattactggtaccaccttctattgctttctggattaaagagtgtcctgatcctgaaagcctgaaggatttcatggaaccacttcatctttctcgaaggaagttgattctcttacctataaacgataattctgacgtgtgcatggctgaaggtgggagtcattggagcttactggtttttgatagaaactccaatgtatttgtacatcatgacagcagttccgggtgcatgaatgagtatcatgccaaacaagtatacaaggctactcttccctatacatcatccaatgccacttataaagagtgtccaaacatgccaaagcaagttaatggttatgattgtggcgtgtatgtcttagctattgcaagagtcatctgtcagtggtatgcaagcagtggaactcaagatgcagatactctgtggttctcccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8920" stop="12432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9220" g_stop="9349" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9350" i_stop="11527" i_length="2178">
            <donor d_prob="0.498" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11528" g_stop="12132" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="735" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E710086" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9220" e_stop="9349"/>
          <exon e_start="11528" e_stop="12132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAATTGAAAGCGCCTGAAATCGGAGTGCCACCGGGAATCATAACAACGTTTCCGGTTCAAGCAGTTTGAGAAATCAGTTGCCGGAGAACGAACGGAGAGATTCATCGGAACCCTATACCGAAACAGTGAGTTTCCGGATCCACTCCTTATTAATGACGATTCACTACTTGTCTCAAAACGGTGACAGTATCTCTAGACTACAGTTGATAACTTATATTTCTGTCTTTCATATGATTTGAGCATAAAAAGCTTCATTTTTTCTTTGTGAACTATGCGTTCGCTCATTGCACTTCGTGGAAAATCAAATAATTCTAGCTCCATTTTGACTTGTGTAGATATGATGTCGAAATTCGTCGATGGTTTAGTATGTGGAGATTAAAAAGTGGAAGATGTTACATTGTATTTAAGTAGTGATAACAGTCATGAATTGCCTCAAAATATATGCTGTTGCTCTTCATTGATAAATTTGAATTCGTGTATTGTGAATTGGATGAAAAACTTGATATTGAGTGGAAGTCTCTGACTTTTTTCTTCGTAGTGTTAGACAATGGAACTGTTATGAACAAACTGTCAGGTTGTCTTTCTTGGGACACTTTGGAACTGTTTTGGTTTGATGGTTTCCATGGGCTGTACTGAAATATGATACGGAGATATTGAGAGAGGAAAGAAGGAGGAAATTGATTATGTTTTTGTATCAGTAGGAAAGCAGAGAATGAATCTCATTAACCTGAATGAAAATGAATATAAACAGTATAAGCTTATATTGTAGCTACACTAACCGACTTACTTGCTAATGCACGTAACCAACTAATGCTTTTTAACTACTCAATAACAAACTAACCAAATAATTAGTTACAGGCTGAACTTATTAAGTGACTCCACTGTTCTCTGGCTACAAGTTAGATCTGTAGATTTATAGGTACGTTCAATTAGAATCTTGATAGGTGGAATTCCTTCTTACTAAAAGGCATTCTTACATTATGATTACAAATAAAACAATTTATTTATGTACTCCCTCCATTCATTTTTAGCTGTCACGTGCAGCCTATTAATGCAAGGGTGAGGGGAATTTATTCCCTTGCCATATACCTTACAAGGTGTGCGGTACATAATGCCTTATAAGGCGTGGTACAAGGTGCCGTGATCCTCACGCCTTACAATAAAAGTTAAATGTCTTCCATTAATTTTTATTGTAAGGTATGGTGTCCCTCACGCGGCTACTCCTTTGGTTTCTTTTCATTTCTGTTGCCCTTCTGGAAATTTTGATTAAAAAAGGGTTGCCCTTTAGGCTCCGGACTCCTATTAAATCCTTTCATGACTATTGTGAGCAGAAAAGATGAGAGAGGATCCCCGTGTCTGAGACCCCTTTCAGAAAGAAAAAAAAACTTACATGTTCTCCATTCTCCAAAATAGAGATCTTGATAGTTTTGATACAAAAACTAACTAATTTCAGCCACCTCTCTCCAATTTACATGATTTCAATTAGCACAAATGATTAGTTGCTCATCATATCTTAGTCCGAGTCTCTTTACAGTCTGGGGAGATGGAATTCTTGTCTGTCATGCAATATAATAGAAAAAGTGAGAGAACTTCAAAACATTGTGTATTGACATATATGCTCACAACCTAGAGAAGTGTGAACCGTTATCATCTTTCATAAAGTCTGATCAATGTATATTTTCATTCATGTGCTTTAGTTTACTTTCATGATATTATTCCTTTTTCACGAAAATTGTCCAACTGTTTCTCTGATGGGTTAAATCTCTGTTGCATTAGGAGCCAAGTCATGCACCACTATACTAATTATGAAATGGTAGAGAATATCCACTTTCAGATTTAGCAAGGCAAAGCTAATGTATTATGAGTTCTGACCTTCAACATAATAACCTGTTCGATTATCTGATTTGCATAGATATGAAGGATATTATCTATGATGGTAAGATAAGGAGGAAGTTTTGTGTGGTACTATGGTTGAAGTTTGCTTTGGTTCAAGACATATAATCTCTCCTAAGTGTTTATGGACATTCTATCTCGTCTTCTAAGTGATTATGGTTACTCTATCTCTTCTCCTGAGTGTTTGTGGACATCCTTTGTTTTCTTTCACCTCATATTTTGGTCAAAGTACTGGTCATGTTTGAACAGATTCATTTTTTTTTTTTGTGAAATCATGCAATTCTATTGAAGTCGTACTAACAAAGTAGTGAAGTACTGATATATTTGAACAGAATGAAGAAAAATATTCACTTGTTTTTTTTCCTTCCTATATTTCCTTATTGTATCTAATTCTTGTGTACTATGTATAGATTTGCAGTGGCACCATGGCTAAATCCGGAGCAGATGAGAAGATTCTCAGCTACAACGATGTCGTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACTTCATCTTTCTCGAAGGAAGTTGATTCTCTTACCTATAAACGATAATTCTGACGTGTGCATGGCTGAAGGTGGGAGTCATTGGAGCTTACTGGTTTTTGATAGAAACTCCAATGTATTTGTACATCATGACAGCAGTTCCGGGTGCATGAATGAGTATCATGCCAAACAAGTATACAAGGCTACTCTTCCCTATACATCATCCAATGCCACTTATAAAGAGTGTCCAAACATGCCAAAGCAAGTTAATGGTTATGATTGTGGCGTGTATGTCTTAGCTATTGCAAGAGTCATCTGTCAGTGGTATGCAAGCAGTGGAACTCAAGATGCAGATACTCTGTGGTTCTCCCATTT</genome_strand>
        <mrna_strand>GGGAAAAATTGAAAGCGCCTGAAATCGGAGTGCCACCGGGAATCATAACAACGTTTCCGGTTCAAGCAGTTTGAGAAATCAGTTGCCGGAGAACGAACGGAGAGATTCATCGGAACCCTATACCGAAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCAGTGGCACCATGGCTAAATCCGGAGCAGATGAGAAGATTCTCAGCTACAACGATGTCGTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACTTCATCTTTCTCGAAGGAAGTTGATTCTCTTACCTATAAACGATAATTCTGACGTGTGCATGGCTGAAGGTGGGAGTCATTGGAGCTTACTGGTTTTTGATAGAAACTCCAATGTATTTGTACATCATGACAGCAGTTCCGGGTGCATGAATGAGTATCATGCCAAACAAGTATACAAGGCTACTCTTCCCTATACATCATCCAATGCCACTTATAAAGAGTGTCCAAACATGCCAAAGCAAGTTAATGGTTATGATTGTGGCGTGTATGTCTTAGCTATTGCAAGAGTCATCTGTCAGTGGTATGCAAGCAGTGGAACTCAAGATGCAGATACTCTGTGGTTCTCCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252649" ref_strand="+" ref_description="SGN-E252649 [cLEG-20-L12]">
      <seq>aaaaattgaaagcgcctgaaatcggagtgccaccgggaatcataacaacgtttccggttcaagcagtttgagaaatcagttgccggagaacgaacggagagattcatcggaaccctataccgaaacaatttgcagtggcaccatggctaaatccggagcagatgaaaatctcagctacaactgatgtcagttcttcggcgatcagatttggacattctcaatggtccttattatctcaatgaccgcatcattgagttctattttagctatctcagctcactctttccatctgacgacatattactggtaccaccttctattgctttctggattaaagagtgtcctgatcctgaaagcctgaaggatttcatggaaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8923" stop="12081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9223" g_stop="9349" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9350" i_stop="11527" i_length="2178">
            <donor d_prob="0.498" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11528" g_stop="11781" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="380" r_length="253" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E252649" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9223" e_stop="9349"/>
          <exon e_start="11528" e_stop="11781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGAAAGCGCCTGAAATCGGAGTGCCACCGGGAATCATAACAACGTTTCCGGTTCAAGCAGTTTGAGAAATCAGTTGCCGGAGAACGAACGGAGAGATTCATCGGAACCCTATACCGAAACAGTGAGTTTCCGGATCCACTCCTTATTAATGACGATTCACTACTTGTCTCAAAACGGTGACAGTATCTCTAGACTACAGTTGATAACTTATATTTCTGTCTTTCATATGATTTGAGCATAAAAAGCTTCATTTTTTCTTTGTGAACTATGCGTTCGCTCATTGCACTTCGTGGAAAATCAAATAATTCTAGCTCCATTTTGACTTGTGTAGATATGATGTCGAAATTCGTCGATGGTTTAGTATGTGGAGATTAAAAAGTGGAAGATGTTACATTGTATTTAAGTAGTGATAACAGTCATGAATTGCCTCAAAATATATGCTGTTGCTCTTCATTGATAAATTTGAATTCGTGTATTGTGAATTGGATGAAAAACTTGATATTGAGTGGAAGTCTCTGACTTTTTTCTTCGTAGTGTTAGACAATGGAACTGTTATGAACAAACTGTCAGGTTGTCTTTCTTGGGACACTTTGGAACTGTTTTGGTTTGATGGTTTCCATGGGCTGTACTGAAATATGATACGGAGATATTGAGAGAGGAAAGAAGGAGGAAATTGATTATGTTTTTGTATCAGTAGGAAAGCAGAGAATGAATCTCATTAACCTGAATGAAAATGAATATAAACAGTATAAGCTTATATTGTAGCTACACTAACCGACTTACTTGCTAATGCACGTAACCAACTAATGCTTTTTAACTACTCAATAACAAACTAACCAAATAATTAGTTACAGGCTGAACTTATTAAGTGACTCCACTGTTCTCTGGCTACAAGTTAGATCTGTAGATTTATAGGTACGTTCAATTAGAATCTTGATAGGTGGAATTCCTTCTTACTAAAAGGCATTCTTACATTATGATTACAAATAAAACAATTTATTTATGTACTCCCTCCATTCATTTTTAGCTGTCACGTGCAGCCTATTAATGCAAGGGTGAGGGGAATTTATTCCCTTGCCATATACCTTACAAGGTGTGCGGTACATAATGCCTTATAAGGCGTGGTACAAGGTGCCGTGATCCTCACGCCTTACAATAAAAGTTAAATGTCTTCCATTAATTTTTATTGTAAGGTATGGTGTCCCTCACGCGGCTACTCCTTTGGTTTCTTTTCATTTCTGTTGCCCTTCTGGAAATTTTGATTAAAAAAGGGTTGCCCTTTAGGCTCCGGACTCCTATTAAATCCTTTCATGACTATTGTGAGCAGAAAAGATGAGAGAGGATCCCCGTGTCTGAGACCCCTTTCAGAAAGAAAAAAAAACTTACATGTTCTCCATTCTCCAAAATAGAGATCTTGATAGTTTTGATACAAAAACTAACTAATTTCAGCCACCTCTCTCCAATTTACATGATTTCAATTAGCACAAATGATTAGTTGCTCATCATATCTTAGTCCGAGTCTCTTTACAGTCTGGGGAGATGGAATTCTTGTCTGTCATGCAATATAATAGAAAAAGTGAGAGAACTTCAAAACATTGTGTATTGACATATATGCTCACAACCTAGAGAAGTGTGAACCGTTATCATCTTTCATAAAGTCTGATCAATGTATATTTTCATTCATGTGCTTTAGTTTACTTTCATGATATTATTCCTTTTTCACGAAAATTGTCCAACTGTTTCTCTGATGGGTTAAATCTCTGTTGCATTAGGAGCCAAGTCATGCACCACTATACTAATTATGAAATGGTAGAGAATATCCACTTTCAGATTTAGCAAGGCAAAGCTAATGTATTATGAGTTCTGACCTTCAACATAATAACCTGTTCGATTATCTGATTTGCATAGATATGAAGGATATTATCTATGATGGTAAGATAAGGAGGAAGTTTTGTGTGGTACTATGGTTGAAGTTTGCTTTGGTTCAAGACATATAATCTCTCCTAAGTGTTTATGGACATTCTATCTCGTCTTCTAAGTGATTATGGTTACTCTATCTCTTCTCCTGAGTGTTTGTGGACATCCTTTGTTTTCTTTCACCTCATATTTTGGTCAAAGTACTGGTCATGTTTGAACAGATTCATTTTTTTTTTTTGTGAAATCATGCAATTCTATTGAAGTCGTACTAACAAAGTAGTGAAGTACTGATATATTTGAACAGAATGAAGAAAAATATTCACTTGTTTTTTTTCCTTCCTATATTTCCTTATTGTATCTAATTCTTGTGTACTATGTATAGATTTGCAGTGGCACCATGGCTAAATCCGGAGCAGATGAGAAGATTCTCAGCTACAAC-GATGTC-GTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACT</genome_strand>
        <mrna_strand>AAAAATTGAAAGCGCCTGAAATCGGAGTGCCACCGGGAATCATAACAACGTTTCCGGTTCAAGCAGTTTGAGAAATCAGTTGCCGGAGAACGAACGGAGAGATTCATCGGAACCCTATACCGAAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCAGTGGCACCATGGCTAAATCCGGAGCAGATGA-AA-A-TCTCAGCTACAACTGATGTCAGTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394983" ref_strand="+" ref_description="SGN-E394983 [TUS-34-I24]">
      <seq>gagtgccaccgggaatcataacaacgtttccggttcaagcagtttgagaaatcagttgccggagaacgaacggagagattcatcggaaccctataccgaaacaatttgcagtggcaccatggctaaatccggagcagatgagaagattctcagctacaacgatgtcgttcttcggcgatcagatttggacattctcaatggtccttattatctcaatgaccgcatcattgagttctattttagctatctcagctcactctttccatctgacgacatattactggtaccaccttctattgctttctggattaaagagtgtcctgatcctgaaagcctgaaggatttcatggaaccacttcatctttctcgaaggaagttgattctcttacctataaacgataattctgacgtgtgcatggctgaatgtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8947" stop="12155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9247" g_stop="9349" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9350" i_stop="11527" i_length="2178">
            <donor d_prob="0.498" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11528" g_stop="11855" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="431" r_length="328" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E394983" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9247" e_stop="9349"/>
          <exon e_start="11528" e_stop="11855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGCCACCGGGAATCATAACAACGTTTCCGGTTCAAGCAGTTTGAGAAATCAGTTGCCGGAGAACGAACGGAGAGATTCATCGGAACCCTATACCGAAACAGTGAGTTTCCGGATCCACTCCTTATTAATGACGATTCACTACTTGTCTCAAAACGGTGACAGTATCTCTAGACTACAGTTGATAACTTATATTTCTGTCTTTCATATGATTTGAGCATAAAAAGCTTCATTTTTTCTTTGTGAACTATGCGTTCGCTCATTGCACTTCGTGGAAAATCAAATAATTCTAGCTCCATTTTGACTTGTGTAGATATGATGTCGAAATTCGTCGATGGTTTAGTATGTGGAGATTAAAAAGTGGAAGATGTTACATTGTATTTAAGTAGTGATAACAGTCATGAATTGCCTCAAAATATATGCTGTTGCTCTTCATTGATAAATTTGAATTCGTGTATTGTGAATTGGATGAAAAACTTGATATTGAGTGGAAGTCTCTGACTTTTTTCTTCGTAGTGTTAGACAATGGAACTGTTATGAACAAACTGTCAGGTTGTCTTTCTTGGGACACTTTGGAACTGTTTTGGTTTGATGGTTTCCATGGGCTGTACTGAAATATGATACGGAGATATTGAGAGAGGAAAGAAGGAGGAAATTGATTATGTTTTTGTATCAGTAGGAAAGCAGAGAATGAATCTCATTAACCTGAATGAAAATGAATATAAACAGTATAAGCTTATATTGTAGCTACACTAACCGACTTACTTGCTAATGCACGTAACCAACTAATGCTTTTTAACTACTCAATAACAAACTAACCAAATAATTAGTTACAGGCTGAACTTATTAAGTGACTCCACTGTTCTCTGGCTACAAGTTAGATCTGTAGATTTATAGGTACGTTCAATTAGAATCTTGATAGGTGGAATTCCTTCTTACTAAAAGGCATTCTTACATTATGATTACAAATAAAACAATTTATTTATGTACTCCCTCCATTCATTTTTAGCTGTCACGTGCAGCCTATTAATGCAAGGGTGAGGGGAATTTATTCCCTTGCCATATACCTTACAAGGTGTGCGGTACATAATGCCTTATAAGGCGTGGTACAAGGTGCCGTGATCCTCACGCCTTACAATAAAAGTTAAATGTCTTCCATTAATTTTTATTGTAAGGTATGGTGTCCCTCACGCGGCTACTCCTTTGGTTTCTTTTCATTTCTGTTGCCCTTCTGGAAATTTTGATTAAAAAAGGGTTGCCCTTTAGGCTCCGGACTCCTATTAAATCCTTTCATGACTATTGTGAGCAGAAAAGATGAGAGAGGATCCCCGTGTCTGAGACCCCTTTCAGAAAGAAAAAAAAACTTACATGTTCTCCATTCTCCAAAATAGAGATCTTGATAGTTTTGATACAAAAACTAACTAATTTCAGCCACCTCTCTCCAATTTACATGATTTCAATTAGCACAAATGATTAGTTGCTCATCATATCTTAGTCCGAGTCTCTTTACAGTCTGGGGAGATGGAATTCTTGTCTGTCATGCAATATAATAGAAAAAGTGAGAGAACTTCAAAACATTGTGTATTGACATATATGCTCACAACCTAGAGAAGTGTGAACCGTTATCATCTTTCATAAAGTCTGATCAATGTATATTTTCATTCATGTGCTTTAGTTTACTTTCATGATATTATTCCTTTTTCACGAAAATTGTCCAACTGTTTCTCTGATGGGTTAAATCTCTGTTGCATTAGGAGCCAAGTCATGCACCACTATACTAATTATGAAATGGTAGAGAATATCCACTTTCAGATTTAGCAAGGCAAAGCTAATGTATTATGAGTTCTGACCTTCAACATAATAACCTGTTCGATTATCTGATTTGCATAGATATGAAGGATATTATCTATGATGGTAAGATAAGGAGGAAGTTTTGTGTGGTACTATGGTTGAAGTTTGCTTTGGTTCAAGACATATAATCTCTCCTAAGTGTTTATGGACATTCTATCTCGTCTTCTAAGTGATTATGGTTACTCTATCTCTTCTCCTGAGTGTTTGTGGACATCCTTTGTTTTCTTTCACCTCATATTTTGGTCAAAGTACTGGTCATGTTTGAACAGATTCATTTTTTTTTTTTGTGAAATCATGCAATTCTATTGAAGTCGTACTAACAAAGTAGTGAAGTACTGATATATTTGAACAGAATGAAGAAAAATATTCACTTGTTTTTTTTCCTTCCTATATTTCCTTATTGTATCTAATTCTTGTGTACTATGTATAGATTTGCAGTGGCACCATGGCTAAATCCGGAGCAGATGAGAAGATTCTCAGCTACAACGATGTCGTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACTTCATCTTTCTCGAAGGAAGTTGATTCTCTTACCTATAAACGATAATTCTGACGTGTGCATGGCTGAAGGTGGGA</genome_strand>
        <mrna_strand>GAGTGCCACCGGGAATCATAACAACGTTTCCGGTTCAAGCAGTTTGAGAAATCAGTTGCCGGAGAACGAACGGAGAGATTCATCGGAACCCTATACCGAAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCAGTGGCACCATGGCTAAATCCGGAGCAGATGAGAAGATTCTCAGCTACAACGATGTCGTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACTTCATCTTTCTCGAAGGAAGTTGATTCTCTTACCTATAAACGATAATTCTGACGTGTGCATGGCTGAATGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248535" ref_strand="+" ref_description="SGN-E248535 [cLEF-59-D6]">
      <seq>agtgccaccgggaatcataacaacgtttccggttcaagcagtttgagaaatcagttgccggagaacgaacggagagattcatcggaaccctataccgaaacaatttgcagtggcaccatggctaaatccggagcagatgagaagattctcagctacaacgatgtcgttcttcggcgatcagatttggacattctcaatggtccttattatctcaatgaccgcatcattgagttctattttagctatctcagctcactctttccatctgacgacatattactggtaccaccttctattgctttctggattaaagagtgtcctgatcctgaaagcctgaaggatttcatggaaccacttcatctttctcgaaggaagttgattctcttacctataaacgataattctgacgtgtgcatggctgaaggtgggagtcattggagcttactggtttttgatagaaactccaatgtatttgtacatcatgacagcagttccgggtgcatgaatgagtatcatgccaaacaagtatacaaggctactcttccctatacatcatccaatgccacttataaagagtgtccaaacatgccaaagcaagttaatggttatgattgtggcgtgtatgtcttagctattgcaagagtcatctgtcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8948" stop="12380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9248" g_stop="9349" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9350" i_stop="11527" i_length="2178">
            <donor d_prob="0.498" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11528" g_stop="12080" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="655" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E248535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9248" e_stop="9349"/>
          <exon e_start="11528" e_stop="12080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCCACCGGGAATCATAACAACGTTTCCGGTTCAAGCAGTTTGAGAAATCAGTTGCCGGAGAACGAACGGAGAGATTCATCGGAACCCTATACCGAAACAGTGAGTTTCCGGATCCACTCCTTATTAATGACGATTCACTACTTGTCTCAAAACGGTGACAGTATCTCTAGACTACAGTTGATAACTTATATTTCTGTCTTTCATATGATTTGAGCATAAAAAGCTTCATTTTTTCTTTGTGAACTATGCGTTCGCTCATTGCACTTCGTGGAAAATCAAATAATTCTAGCTCCATTTTGACTTGTGTAGATATGATGTCGAAATTCGTCGATGGTTTAGTATGTGGAGATTAAAAAGTGGAAGATGTTACATTGTATTTAAGTAGTGATAACAGTCATGAATTGCCTCAAAATATATGCTGTTGCTCTTCATTGATAAATTTGAATTCGTGTATTGTGAATTGGATGAAAAACTTGATATTGAGTGGAAGTCTCTGACTTTTTTCTTCGTAGTGTTAGACAATGGAACTGTTATGAACAAACTGTCAGGTTGTCTTTCTTGGGACACTTTGGAACTGTTTTGGTTTGATGGTTTCCATGGGCTGTACTGAAATATGATACGGAGATATTGAGAGAGGAAAGAAGGAGGAAATTGATTATGTTTTTGTATCAGTAGGAAAGCAGAGAATGAATCTCATTAACCTGAATGAAAATGAATATAAACAGTATAAGCTTATATTGTAGCTACACTAACCGACTTACTTGCTAATGCACGTAACCAACTAATGCTTTTTAACTACTCAATAACAAACTAACCAAATAATTAGTTACAGGCTGAACTTATTAAGTGACTCCACTGTTCTCTGGCTACAAGTTAGATCTGTAGATTTATAGGTACGTTCAATTAGAATCTTGATAGGTGGAATTCCTTCTTACTAAAAGGCATTCTTACATTATGATTACAAATAAAACAATTTATTTATGTACTCCCTCCATTCATTTTTAGCTGTCACGTGCAGCCTATTAATGCAAGGGTGAGGGGAATTTATTCCCTTGCCATATACCTTACAAGGTGTGCGGTACATAATGCCTTATAAGGCGTGGTACAAGGTGCCGTGATCCTCACGCCTTACAATAAAAGTTAAATGTCTTCCATTAATTTTTATTGTAAGGTATGGTGTCCCTCACGCGGCTACTCCTTTGGTTTCTTTTCATTTCTGTTGCCCTTCTGGAAATTTTGATTAAAAAAGGGTTGCCCTTTAGGCTCCGGACTCCTATTAAATCCTTTCATGACTATTGTGAGCAGAAAAGATGAGAGAGGATCCCCGTGTCTGAGACCCCTTTCAGAAAGAAAAAAAAACTTACATGTTCTCCATTCTCCAAAATAGAGATCTTGATAGTTTTGATACAAAAACTAACTAATTTCAGCCACCTCTCTCCAATTTACATGATTTCAATTAGCACAAATGATTAGTTGCTCATCATATCTTAGTCCGAGTCTCTTTACAGTCTGGGGAGATGGAATTCTTGTCTGTCATGCAATATAATAGAAAAAGTGAGAGAACTTCAAAACATTGTGTATTGACATATATGCTCACAACCTAGAGAAGTGTGAACCGTTATCATCTTTCATAAAGTCTGATCAATGTATATTTTCATTCATGTGCTTTAGTTTACTTTCATGATATTATTCCTTTTTCACGAAAATTGTCCAACTGTTTCTCTGATGGGTTAAATCTCTGTTGCATTAGGAGCCAAGTCATGCACCACTATACTAATTATGAAATGGTAGAGAATATCCACTTTCAGATTTAGCAAGGCAAAGCTAATGTATTATGAGTTCTGACCTTCAACATAATAACCTGTTCGATTATCTGATTTGCATAGATATGAAGGATATTATCTATGATGGTAAGATAAGGAGGAAGTTTTGTGTGGTACTATGGTTGAAGTTTGCTTTGGTTCAAGACATATAATCTCTCCTAAGTGTTTATGGACATTCTATCTCGTCTTCTAAGTGATTATGGTTACTCTATCTCTTCTCCTGAGTGTTTGTGGACATCCTTTGTTTTCTTTCACCTCATATTTTGGTCAAAGTACTGGTCATGTTTGAACAGATTCATTTTTTTTTTTTGTGAAATCATGCAATTCTATTGAAGTCGTACTAACAAAGTAGTGAAGTACTGATATATTTGAACAGAATGAAGAAAAATATTCACTTGTTTTTTTTCCTTCCTATATTTCCTTATTGTATCTAATTCTTGTGTACTATGTATAGATTTGCAGTGGCACCATGGCTAAATCCGGAGCAGATGAGAAGATTCTCAGCTACAACGATGTCGTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACTTCATCTTTCTCGAAGGAAGTTGATTCTCTTACCTATAAACGATAATTCTGACGTGTGCATGGCTGAAGGTGGGAGTCATTGGAGCTTACTGGTTTTTGATAGAAACTCCAATGTATTTGTACATCATGACAGCAGTTCCGGGTGCATGAATGAGTATCATGCCAAACAAGTATACAAGGCTACTCTTCCCTATACATCATCCAATGCCACTTATAAAGAGTGTCCAAACATGCCAAAGCAAGTTAATGGTTATGATTGTGGCGTGTATGTCTTAGCTATTGCAAGAGTCATCTGTCAGT</genome_strand>
        <mrna_strand>AGTGCCACCGGGAATCATAACAACGTTTCCGGTTCAAGCAGTTTGAGAAATCAGTTGCCGGAGAACGAACGGAGAGATTCATCGGAACCCTATACCGAAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCAGTGGCACCATGGCTAAATCCGGAGCAGATGAGAAGATTCTCAGCTACAACGATGTCGTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACTTCATCTTTCTCGAAGGAAGTTGATTCTCTTACCTATAAACGATAATTCTGACGTGTGCATGGCTGAAGGTGGGAGTCATTGGAGCTTACTGGTTTTTGATAGAAACTCCAATGTATTTGTACATCATGACAGCAGTTCCGGGTGCATGAATGAGTATCATGCCAAACAAGTATACAAGGCTACTCTTCCCTATACATCATCCAATGCCACTTATAAAGAGTGTCCAAACATGCCAAAGCAAGTTAATGGTTATGATTGTGGCGTGTATGTCTTAGCTATTGCAAGAGTCATCTGTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252643" ref_strand="+" ref_description="SGN-E252643 [cLEG-20-F12]">
      <seq>tgtcgttcttcggcgatcagatttggacattctcaatggtccttattatctcaatgaccgcatcattgagttctattttagctatctcagctcactctttccatctgacgacatattactggtaccaccttctattgctttctggattaaagagtgtcctgatcctgaaagcctgaaggatttcatggaaccacttcatctttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="11287" stop="12092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11587" g_stop="11792" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E252643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11587" e_stop="11792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACTTCATCTTTCTC</genome_strand>
        <mrna_strand>TGTCGTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACTTCATCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547411" ref_strand="+" ref_description="SGN-E547411 [TUS-71-E12](-)">
      <seq>gacaaaactcccatcctncctgntttttgccctcactcccctttccccctcctaaagaaattgaaaaaagaaaactcacaagagggaaaagagggcattatattatcaacctacaaaaaaaaaatggaaaaaattggtgataatatgcaagtagaggaaatggaagaaataaaagatgtacaagcaagaaaagccacaatggttggcataattgttgtagcatgggcaattcctactttacatgtcacacataggacatggcatcatttttggttagataggataatattttttcttccatctatattttttcaagttatacatatcttgattacttggaaattttacaaagagatgatgaaacttatacaacaagaacaacaagaacaggaacaggacaggaagcaacataaagaaatagatcataaaaaaccatcttacgcgttcgtatgcgcgtatttgtttttgatgataatcatgagttggatgacagtatcctaatgaagatgatcaagctttagagagtgactttacaagttgttcaattcttgggaatgatttgtagtatttgctattgtttccttttcttttaagtagagtttttgattgaatcagtttgtatatgaatgtttgaattcaagtaggaattcttgatcatcaatcatacagtattttgtctctttatgtatgtaaatgtttaccttaaaacttttattttgagagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13760" stop="12436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13461" g_stop="12729" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E547411" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13461" e_stop="12729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAACTCCCATCCTCCTTGCTTCTTGCCCTCACT-CCCTTCCCCCTCCATAAAGAAATTGAAAAAAGAAAACTCACAAGAGGGAAAAGAGGGCATTATATTATCAACCTACAAAAAAAAAAATGGAAAAAATTGGTGATAATATGCAAGTAGAGGAAATGGAAGAAATAAAAGATGTACAAGCAAGAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAG---AACAAGAACAGGAACAGGACAGGAAGCAACATAGAGAAATAGATCATAAAAAACCATCGTATACGTTCGTATGCGCGTATTTGTTTTTGATGATAATCATGAGTTGGATGACAGTATCCTAATGAAGATGATCAAGCTTTAGAGTGTGATTTTACAAGTTGTTCAATTCTTGGGAATGATTTGTAGTATTTGCTATTGTTTCCTTTTCTTTTAAGTAGAGTTTTTGATTGAATCAGTTTGTATATGAATTGTTTGAATTCAAGTAGGAATTCTTGATCATCAATCATACAGTATTTTGTCTCTTTATGTATGTAAATGTTTACCTTAAAACTTTTATTTTGAGAGAAACATCATGTG</genome_strand>
        <mrna_strand>GACAAAACTCCCATCCTNCCTGNTTTTTGCCCTCACTCCCCTTTCCCCCTCCTAAAGAAATTGAAAAAAGAAAACTCACAAGAGGGAAAAGAGGGCATTATATTATCAACCTAC-AAAAAAAAAATGGAAAAAATTGGTGATAATATGCAAGTAGAGGAAATGGAAGAAATAAAAGATGTACAAGCAAGAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAGAACAACAAGAACAGGAACAGGACAGGAAGCAACATAAAGAAATAGATCATAAAAAACCATCTTACGCGTTCGTATGCGCGTATTTGTTTTTGATGATAATCATGAGTTGGATGACAGTATCCTAATGAAGATGATCAAGCTTTAGAGAGTGACTTTACAAGTTGTTCAATTCTTGGGAATGATTTGTAGTATTTGCTATTGTTTCCTTTTCTTTTAAGTAGAGTTTTTGATTGAATCAGTTTGTATATGAA-TGTTTGAATTCAAGTAGGAATTCTTGATCATCAATCATACAGTATTTTGTCTCTTTATGTATGTAAATGTTTACCTTAAAACTTTTATTTTGAGAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547412" ref_strand="+" ref_description="SGN-E547412 [TUS-71-E12]">
      <seq>gacaaaactcccatcctccttgcttcttgccctcactcccttccccctccataaagaaattgaaaaaagaaaactcacaagagggaaaagagggcattatattatcaacctacaaaaaaaaaatggaaaaaattggtgataatatgcaagtagaggaaatggaagaaataaaagatgtacaagcaagaaaagccacaatggttggcataattgttgtagcatgggcaattcctactttacatgtcacacataggacatggcatcatttttggttagataggataatattttttcttccatctatattttttcaagttatacatatcttgattacttggaaattttacaaagagatgatgaaacttatacaacaagaacaacaagaacaggaacaggacaggaagcaacataaagaaatagatcataaaaaaccatcttacgcgttcgtatgcgcgtatttgtttttgatgataatcatgagttggatgacagtatcctaatgaagatgatcaagctttagagagtgactttacaagttgttcaattcttgggaatgatttgtagtatttgctattgtttccttttcttttaagtagagtttttgattgaatcagtttgtatatgaaatgtttgaattcaagtaggaattcttgatcatcaatcatacagtattttgtctctttatgtatgtaaatgtttaccttagaacttttattttgagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13760" stop="12436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13461" g_stop="12731" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E547412" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13461" e_stop="12731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAACTCCCATCCTCCTTGCTTCTTGCCCTCACTCCCTTCCCCCTCCATAAAGAAATTGAAAAAAGAAAACTCACAAGAGGGAAAAGAGGGCATTATATTATCAACCTACAAAAAAAAAAATGGAAAAAATTGGTGATAATATGCAAGTAGAGGAAATGGAAGAAATAAAAGATGTACAAGCAAGAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAG---AACAAGAACAGGAACAGGACAGGAAGCAACATAGAGAAATAGATCATAAAAAACCATCGTATACGTTCGTATGCGCGTATTTGTTTTTGATGATAATCATGAGTTGGATGACAGTATCCTAATGAAGATGATCAAGCTTTAGAGTGTGATTTTACAAGTTGTTCAATTCTTGGGAATGATTTGTAGTATTTGCTATTGTTTCCTTTTCTTTTAAGTAGAGTTTTTGATTGAATCAGTTTGTATATGAATTGTTTGAATTCAAGTAGGAATTCTTGATCATCAATCATACAGTATTTTGTCTCTTTATGTATGTAAATGTTTACCTTAAAACTTTTATTTTGAGAGAAACATCATG</genome_strand>
        <mrna_strand>GACAAAACTCCCATCCTCCTTGCTTCTTGCCCTCACTCCCTTCCCCCTCCATAAAGAAATTGAAAAAAGAAAACTCACAAGAGGGAAAAGAGGGCATTATATTATCAACCTAC-AAAAAAAAAATGGAAAAAATTGGTGATAATATGCAAGTAGAGGAAATGGAAGAAATAAAAGATGTACAAGCAAGAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAGAACAACAAGAACAGGAACAGGACAGGAAGCAACATAAAGAAATAGATCATAAAAAACCATCTTACGCGTTCGTATGCGCGTATTTGTTTTTGATGATAATCATGAGTTGGATGACAGTATCCTAATGAAGATGATCAAGCTTTAGAGAGTGACTTTACAAGTTGTTCAATTCTTGGGAATGATTTGTAGTATTTGCTATTGTTTCCTTTTCTTTTAAGTAGAGTTTTTGATTGAATCAGTTTGTATATGAAATGTTTGAATTCAAGTAGGAATTCTTGATCATCAATCATACAGTATTTTGTCTCTTTATGTATGTAAATGTTTACCTTAGAACTTTTATTTTGAGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363756" ref_strand="+" ref_description="SGN-E363756 [cLPP-3-E18]">
      <seq>ttccccctccataaagaaattgaaaaaagaaaactcacaagagggaaaagagggcattatattatcaacctacaaaaaaaaaatggaaaaaattggtgataatatgcaagtagaggaaatggaagaaataaaagatgtacaagcaagaaaagccacaatggttggcataattgttgtagcatgggcaattcctactttacatgtcacacataggacatggcatcatttttggttagataggataatattttttcttccatctatattttttcaagttatacatatcttgattacttggaaattttacaaagagatgatgaaacttatacaacaagaacaacaagaacaggaacaggacaggaagcaacataaagaaatagatcataaaaaaccatcttacgcgttcgtatgcgcgtatttgtttttgatgataatcatgagttggatgacagtatcctaatgaagatgatcaagctttagagagtgactttacaagttgttcaattcttgggaatgatttgtagtatttgctattgtttccttttcttttaagtagagtttttgattgaatcagtttgtatatgaatgtttgaattcaagtaggaattcttgatcatcaatcatacaagattttgtctctttatgtatgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13721" stop="12470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13421" g_stop="12771" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="653" polyA_stop="666"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E363756" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13421" e_stop="12771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCCTCCATAAAGAAATTGAAAAAAGAAAACTCACAAGAGGGAAAAGAGGGCATTATATTATCAACCTACAAAAAAAAAAATGGAAAAAATTGGTGATAATATGCAAGTAGAGGAAATGGAAGAAATAAAAGATGTACAAGCAAGAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAG---AACAAGAACAGGAACAGGACAGGAAGCAACATAGAGAAATAGATCATAAAAAACCATCGTATACGTTCGTATGCGCGTATTTGTTTTTGATGATAATCATGAGTTGGATGACAGTATCCTAATGAAGATGATCAAGCTTTAGAGTGTGATTTTACAAGTTGTTCAATTCTTGGGAATGATTTGTAGTATTTGCTATTGTTTCCTTTTCTTTTAAGTAGAGTTTTTGATTGAATCAGTTTGTATATGAATTGTTTGAATTCAAGTAGGAATTCTTGATCATCAATCATACAGTATTTTGTCTCTTTATGTATGTAA</genome_strand>
        <mrna_strand>TTCCCCCTCCATAAAGAAATTGAAAAAAGAAAACTCACAAGAGGGAAAAGAGGGCATTATATTATCAACCTAC-AAAAAAAAAATGGAAAAAATTGGTGATAATATGCAAGTAGAGGAAATGGAAGAAATAAAAGATGTACAAGCAAGAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAGAACAACAAGAACAGGAACAGGACAGGAAGCAACATAAAGAAATAGATCATAAAAAACCATCTTACGCGTTCGTATGCGCGTATTTGTTTTTGATGATAATCATGAGTTGGATGACAGTATCCTAATGAAGATGATCAAGCTTTAGAGAGTGACTTTACAAGTTGTTCAATTCTTGGGAATGATTTGTAGTATTTGCTATTGTTTCCTTTTCTTTTAAGTAGAGTTTTTGATTGAATCAGTTTGTATATGAA-TGTTTGAATTCAAGTAGGAATTCTTGATCATCAATCATACAAGATTTTGTCTCTTTATGTATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359680" ref_strand="+" ref_description="SGN-E359680 [cLPP-5-G7]">
      <seq>gaaaagccacaatggttggcataattgttgtagcatgggcaattcctactttacatgtcacacataggacatggcatcatttttggttagataggataatattttttcttccatctatattttttcaagttatacatatcttgattacttggaaattttacaaagagatgatgaaacttatacaacaagaacaacaagaacaggaacaggacaggaagcaacataaagaaatagatcataaaaaaccatcttacgcgttcgtatgcgcgtatttgtttttgatgataatcatgagttggatgacagtatcctaatgaagatgatcaagctttagagagtgactttacaagttgttcaattcttgggaatgatttgtagtatttgctattgtttccttttcttttaagtagagtttttgattgaatcagtttgtatatgaatgtttgaattcaagtangaattcttgatcatcaatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13574" stop="12496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13274" g_stop="12801" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="490"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E359680" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13274" e_stop="12801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAG---AACAAGAACAGGAACAGGACAGGAAGCAACATAGAGAAATAGATCATAAAAAACCATCGTATACGTTCGTATGCGCGTATTTGTTTTTGATGATAATCATGAGTTGGATGACAGTATCCTAATGAAGATGATCAAGCTTTAGAGTGTGATTTTACAAGTTGTTCAATTCTTGGGAATGATTTGTAGTATTTGCTATTGTTTCCTTTTCTTTTAAGTAGAGTTTTTGATTGAATCAGTTTGTATATGAATTGTTTGAATTCAAGTAGGAATTCTTGATCATCAATC</genome_strand>
        <mrna_strand>GAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAGAACAACAAGAACAGGAACAGGACAGGAAGCAACATAAAGAAATAGATCATAAAAAACCATCTTACGCGTTCGTATGCGCGTATTTGTTTTTGATGATAATCATGAGTTGGATGACAGTATCCTAATGAAGATGATCAAGCTTTAGAGAGTGACTTTACAAGTTGTTCAATTCTTGGGAATGATTTGTAGTATTTGCTATTGTTTCCTTTTCTTTTAAGTAGAGTTTTTGATTGAATCAGTTTGTATATGAA-TGTTTGAATTCAAGTANGAATTCTTGATCATCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362744" ref_strand="+" ref_description="SGN-E362744 [cLPP-1-N18]">
      <seq>ttcttgccctcactcccttccccctccataaagaaattgaaaaaagaaaactcacaagagggaaaagagggcattatattatcaacctacaaaaaaaaaatggaaaaaattggtgataatatgcaagtagaggaaatggaagaaataaaagatgtacaagcaagaaaagccacaatggttggcataattgttgtagcatgggcaattcctactttacatgtcacacataggacatggcatcatttttggttagataggataatattttttcttccatctatattttttcaagttatacatatcttgattacttggaaattttacaaagagatgatgaaacttatacaacaagaacaacaagaacaggaacaggacaggaagcaacataaagaaatagatcataaaaaaccatcttacgcgttcgtatgcgcgtatttgtttttgatgataatcatgagttggatgacagtatcctaatgaagatgatcaagctttagagagtgactttacaagttgttcaattcttgggaatgatttgtagtatttgctattgtttccttttcttttaaatagagtttttgattgaatcagtttgtatatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13738" stop="12537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13438" g_stop="12837" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E362744" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13438" e_stop="12837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGCCCTCACTCCCTTCCCCCTCCATAAAGAAATTGAAAAAAGAAAACTCACAAGAGGGAAAAGAGGGCATTATATTATCAACCTACAAAAAAAAAAATGGAAAAAATTGGTGATAATATGCAAGTAGAGGAAATGGAAGAAATAAAAGATGTACAAGCAAGAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAG---AACAAGAACAGGAACAGGACAGGAAGCAACATAGAGAAATAGATCATAAAAAACCATCGTATACGTTCGTATGCGCGTATTTGTTTTTGATGATAATCATGAGTTGGATGACAGTATCCTAATGAAGATGATCAAGCTTTAGAGTGTGATTTTACAAGTTGTTCAATTCTTGGGAATGATTTGTAGTATTTGCTATTGTTTCCTTTTCTTTTAAGTAGAGTTTTTGATTGAATCAGTTTGTATATGAAT</genome_strand>
        <mrna_strand>TTCTTGCCCTCACTCCCTTCCCCCTCCATAAAGAAATTGAAAAAAGAAAACTCACAAGAGGGAAAAGAGGGCATTATATTATCAACCTAC-AAAAAAAAAATGGAAAAAATTGGTGATAATATGCAAGTAGAGGAAATGGAAGAAATAAAAGATGTACAAGCAAGAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAGAACAACAAGAACAGGAACAGGACAGGAAGCAACATAAAGAAATAGATCATAAAAAACCATCTTACGCGTTCGTATGCGCGTATTTGTTTTTGATGATAATCATGAGTTGGATGACAGTATCCTAATGAAGATGATCAAGCTTTAGAGAGTGACTTTACAAGTTGTTCAATTCTTGGGAATGATTTGTAGTATTTGCTATTGTTTCCTTTTCTTTTAAATAGAGTTTTTGATTGAATCAGTTTGTATATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361880" ref_strand="+" ref_description="SGN-E361880 [cLPP-12-J8]">
      <seq>acaaaactcccatcctccttgcttcttgccctcactcccttccccctccataaagaaattgaaaaaagaaaactcacaagagggaaaagagggcattatattatcaacctacaaaaaaaaaatggaaaaaattggtgataatatgcaagtagaggaaatggaagaaataaaagatgtacaagcaagaaaagccacaatggttggcataattgttgtagcatgggcaattcctactttacatgtcacacataggacatggcatcatttttggttagataggataatattttttcttccatctatattttttcaagttatacatatcttgattacttggaaattttacaaagagatgatgaaacttatacaacaagaacaacaagaacaggaacaggacaggaagcaacataaagaaatagatcataaaaaaccatcttacgcgttcgtatgcgcgtatttgtttttgatgataatcatgagttggatgacagtatcctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13760" stop="12661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13460" g_stop="12961" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E361880" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13460" e_stop="12961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACTCCCATCCTCCTTGCTTCTTGCCCTCACTCCCTTCCCCCTCCATAAAGAAATTGAAAAAAGAAAACTCACAAGAGGGAAAAGAGGGCATTATATTATCAACCTACAAAAAAAAAAATGGAAAAAATTGGTGATAATATGCAAGTAGAGGAAATGGAAGAAATAAAAGATGTACAAGCAAGAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAG---AACAAGAACAGGAACAGGACAGGAAGCAACATAGAGAAATAGATCATAAAAAACCATCGTATACGTTCGTATGCGCGTATTTGTTTTTGATGATAATCATGAGTTGGATGACAGTATCCTAATGA</genome_strand>
        <mrna_strand>ACAAAACTCCCATCCTCCTTGCTTCTTGCCCTCACTCCCTTCCCCCTCCATAAAGAAATTGAAAAAAGAAAACTCACAAGAGGGAAAAGAGGGCATTATATTATCAACCTAC-AAAAAAAAAATGGAAAAAATTGGTGATAATATGCAAGTAGAGGAAATGGAAGAAATAAAAGATGTACAAGCAAGAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAGAACAACAAGAACAGGAACAGGACAGGAAGCAACATAAAGAAATAGATCATAAAAAACCATCTTACGCGTTCGTATGCGCGTATTTGTTTTTGATGATAATCATGAGTTGGATGACAGTATCCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309021" ref_strand="+" ref_description="SGN-E309021 [cLEZ-1-A23]">
      <seq>gaaattgagaaatttcatcttatccatcacattaaaactaataatgaacgagagaatttatctcttgaccatccaaaacaatctcttttagccccatcaaaaatctttttttctctttatcaaatttagatctcatttccatcaacatcaaaaacaaaactcccatcctccttgcttcttgccctcactcccttccccctccataaagaaattgaaaaaagaaaactcacaagagggaaaagagggcattatattatcaacctacaaaaaaaaaaaatggaaaaaattggtgataatatgcaagttgaggaaatggaagaaataaaagatgtgcaagcaagaaaagccacaatggttggcataattgttgcagcatgggcaattcctactttacatgtcacacataggacatggcatcatttttggttagataggataatattttgtcttccatctatattttgtcaagttatacatatcttgattacttggaaattttacaaagagatgatgaaacttatacagcaagaacaagaacaggaacaggacaggaagcaacatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13913" stop="12752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13613" g_stop="13052" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E309021" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13613" e_stop="13052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGAGAAATTTCATCTTATCCATCACATTAAAACTAATAATGAACGAGAGAATTTATCTCTTGACCATCCAAAACAATCTCTTTTAGCCCCATCAAAAATCTTTTTTTCTCTTTATCAAATTTAGTTTTCATTTCCATCAACATCAAAAACAAAACTCCCATCCTCCTTGCTTCTTGCCCTCACTCCCTTCCCCCTCCATAAAGAAATTGAAAAAAGAAAACTCACAAGAGGGAAAAGAGGGCATTATATTATCAACCTAC-AAAAAAAAAAATGGAAAAAATTGGTGATAATATGCAAGTAGAGGAAATGGAAGAAATAAAAGATGTACAAGCAAGAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAGAACAAGAACAGGAACAGGACAGGAAGCAACATAG</genome_strand>
        <mrna_strand>GAAATTGAGAAATTTCATCTTATCCATCACATTAAAACTAATAATGAACGAGAGAATTTATCTCTTGACCATCCAAAACAATCTCTTTTAGCCCCATCAAAAATCTTTTTTTCTCTTTATCAAATTTAGATCTCATTTCCATCAACATCAAAAACAAAACTCCCATCCTCCTTGCTTCTTGCCCTCACTCCCTTCCCCCTCCATAAAGAAATTGAAAAAAGAAAACTCACAAGAGGGAAAAGAGGGCATTATATTATCAACCTACAAAAAAAAAAAATGGAAAAAATTGGTGATAATATGCAAGTTGAGGAAATGGAAGAAATAAAAGATGTGCAAGCAAGAAAAGCCACAATGGTTGGCATAATTGTTGCAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTGTCTTCCATCTATATTTTGTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAGCAAGAACAAGAACAGGAACAGGACAGGAAGCAACATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376459" ref_strand="+" ref_description="SGN-E376459 [TUS-17-H13]">
      <seq>aatgatcaagtttccatgacaatagatgatgaaaaaatgttactctctttcgattcccaagtcgagtctcctagttcaacatatcatgattccttgaggtcgttcaagaaaaatgggatgatcgaattagaggaacgtaacaaagaacatgatttaatcaaggcaggttttcttagtggaatggggcaattaggaaaggaagttgaagttgtggctatacataagaattcatgttcaactatattagggcaagcgaggttagaaagttttcgtatttattccgaagcaatgcggaagaaatgtggtggaaatgctaatattaaatatgcttggtttggttcttccaaagatgaaatttgtaacataatttcacatggattttctacaattactgaaccaaaatcaggagaatgttttggtatgggtgttcatctttatcctgcaaatatccatggggtattatcggcattggaagatgagaatggattaaggcatatgttactttgtatagtaatattatgaaatacagaaataattgaggcttcatccaaacaattttcagccaacttgtcaagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24028" stop="25384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24328" g_stop="24425" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24426" i_stop="24523" i_length="98">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24524" g_stop="24880" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="455" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24881" i_stop="24961" i_length="81">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24962" g_stop="25084" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="579" r_length="124" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E376459" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24328" e_stop="24425"/>
          <exon e_start="24524" e_stop="24880"/>
          <exon e_start="24962" e_stop="25084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCAAGTTTCCATGACAATAGATGATGAAAAAATGTTACTCTCTTTCGATTCCCAAGTCGAGTCTCCTAGTTCAACATATCATGATTCCTTGAGGTCAGAAGCGAATTCAAAATTTCGTTTCGTTAATTTCACTTGTACATTATCATCTGATACTCGATATTATAAATAATATTTTGATTCGATTATATCAGGTCGTTCAAGAAAAATGGGATGATCGAATTAGAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAGGTTAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAGAAATGTGGTGGAAATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTGAACCAAAATCAGGAGAATGTTTTGGTATGGGTGTTCATCTTTATCCTGCAAATATCCATGGGTAAGCAATGATACATATATGTATAGTACTCTATTTCAATATATGTCACAGTTTTAATTTGTATTTTTTTTGGTGTTGAAGGGTATTATCGGCATTGGAAGATGAGAATGGATTAAGGCATATGTTACTTTGTAGAGTAATATTAGGAAATACAGAAATAATTGAGGCTTCATCCAAACAA-TTTCAGCCAACTTGTCAAGATTT</genome_strand>
        <mrna_strand>AATGATCAAGTTTCCATGACAATAGATGATGAAAAAATGTTACTCTCTTTCGATTCCCAAGTCGAGTCTCCTAGTTCAACATATCATGATTCCTTGAG..................................................................................................GTCGTTCAAGAAAAATGGGATGATCGAATTAGAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAGGTTAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAGAAATGTGGTGGAAATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTGAACCAAAATCAGGAGAATGTTTTGGTATGGGTGTTCATCTTTATCCTGCAAATATCCATGG.................................................................................GGTATTATCGGCATTGGAAGATGAGAATGGATTAAGGCATATGTTACTTTGTATAGTAATATTATGAAATACAGAAATAATTGAGGCTTCATCCAAACAATTTTCAGCCAACTTGTCAAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210559" ref_strand="+" ref_description="SGN-E210559 [cLEC-35-H16]">
      <seq>aatgatcaagtttccatgacaatagatgatgaaaaaatgttactctctttcgattcccaagtcgagtctcctagttcaacatatcatgattccttgaggtcgttcaagaaaaatgggatgatcgaattagaggaacgtaacaaagaacatgatttaatcaaggcaggttttcttagtggaatggggcaattaggaaaggaagttgaagttgtggctatacataagaattcatgttcaactatattagggcaagcgaggttagaaagttttcgtatttattccgaagcaatgcggaagaaatgtggtggaaatgctaatattaaatatgcttggtttggttcttccaaagatgaaatttgtaacataatttcacatggattttctacaattactgaaccaaaatcaggagaatgttttggtatgggtgttcatctttatcctgcagatatccatggggtattatcggcattggaagatgagaatggattaaggcatatgttactttgtagagtaatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24028" stop="25325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24328" g_stop="24425" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24426" i_stop="24523" i_length="98">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24524" g_stop="24880" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="455" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24881" i_stop="24961" i_length="81">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24962" g_stop="25025" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="519" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E210559" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24328" e_stop="24425"/>
          <exon e_start="24524" e_stop="24880"/>
          <exon e_start="24962" e_stop="25025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCAAGTTTCCATGACAATAGATGATGAAAAAATGTTACTCTCTTTCGATTCCCAAGTCGAGTCTCCTAGTTCAACATATCATGATTCCTTGAGGTCAGAAGCGAATTCAAAATTTCGTTTCGTTAATTTCACTTGTACATTATCATCTGATACTCGATATTATAAATAATATTTTGATTCGATTATATCAGGTCGTTCAAGAAAAATGGGATGATCGAATTAGAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAGGTTAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAGAAATGTGGTGGAAATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTGAACCAAAATCAGGAGAATGTTTTGGTATGGGTGTTCATCTTTATCCTGCAAATATCCATGGGTAAGCAATGATACATATATGTATAGTACTCTATTTCAATATATGTCACAGTTTTAATTTGTATTTTTTTTGGTGTTGAAGGGTATTATCGGCATTGGAAGATGAGAATGGATTAAGGCATATGTTACTTTGTAGAGTAATATTA</genome_strand>
        <mrna_strand>AATGATCAAGTTTCCATGACAATAGATGATGAAAAAATGTTACTCTCTTTCGATTCCCAAGTCGAGTCTCCTAGTTCAACATATCATGATTCCTTGAG..................................................................................................GTCGTTCAAGAAAAATGGGATGATCGAATTAGAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAGGTTAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAGAAATGTGGTGGAAATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTGAACCAAAATCAGGAGAATGTTTTGGTATGGGTGTTCATCTTTATCCTGCAGATATCCATGG.................................................................................GGTATTATCGGCATTGGAAGATGAGAATGGATTAAGGCATATGTTACTTTGTAGAGTAATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337358" ref_strand="+" ref_description="SGN-E337358 [cTOE-18-M16]">
      <seq>tttccatgacaatagatgatgaaaaaatgttactctctttcgattcccaagtcgagtctcctagttcaacatatcatgattccttgaggtcgttcaagaaaaatgggatgatcgaattataggaacgtaacaaagaacatgatttaatcaaggcaggttttcttagtggaatggggcaattaggaaaggaagttgaagttgtggctatacataagaattcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24038" stop="24960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24338" g_stop="24425" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24426" i_stop="24523" i_length="98">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24524" g_stop="24660" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="225" r_length="137" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E337358" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24338" e_stop="24425"/>
          <exon e_start="24524" e_stop="24660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATGACAATAGATGATGAAAAAATGTTACTCTCTTTCGATTCCCAAGTCGAGTCTCCTAGTTCAACATATCATGATTCCTTGAGGTCAGAAGCGAATTCAAAATTTCGTTTCGTTAATTTCACTTGTACATTATCATCTGATACTCGATATTATAAATAATATTTTGATTCGATTATATCAGGTCGTTCAAGAAAAATGGGATGATCGAATTAGAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTT</genome_strand>
        <mrna_strand>TTTCCATGACAATAGATGATGAAAAAATGTTACTCTCTTTCGATTCCCAAGTCGAGTCTCCTAGTTCAACATATCATGATTCCTTGAG..................................................................................................GTCGTTCAAGAAAAATGGGATGATCGAATTATAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258810" ref_strand="+" ref_description="SGN-E258810 [cLEG-50-F4]">
      <seq>atgatgaaaaaatgttactctctttcgattcccaagtcgagtctcctagttcaacatatcatgattccttgaggtcgttcaagaaaaatgggatgatcgaattagaggaacgtaacaaagaacatgatttaatcaaggcaggttttcttagtggaatggggcaattaggaaaggaagttgaagttgtggctatacataagaattcatgttcaactatattagggcaagcgaggttagaaagttttcgtatttattccgaagcaatgcggaagaaatgtggtggaaatgctaatattaaatatgcttggtttggttcttccaaagatgaaatttgtaacataatttcacatggattttctacaattactgaaccaaaatcaggagaatgttttggtatgggtgttcatctttatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24053" stop="25167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24353" g_stop="24425" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24426" i_stop="24523" i_length="98">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24524" g_stop="24867" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="417" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E258810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24353" e_stop="24425"/>
          <exon e_start="24524" e_stop="24867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGAAAAAATGTTACTCTCTTTCGATTCCCAAGTCGAGTCTCCTAGTTCAACATATCATGATTCCTTGAGGTCAGAAGCGAATTCAAAATTTCGTTTCGTTAATTTCACTTGTACATTATCATCTGATACTCGATATTATAAATAATATTTTGATTCGATTATATCAGGTCGTTCAAGAAAAATGGGATGATCGAATTAGAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAGGTTAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAGAAATGTGGTGGAAATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTGAACCAAAATCAGGAGAATGTTTTGGTATGGGTGTTCATCTTTATCCTG</genome_strand>
        <mrna_strand>ATGATGAAAAAATGTTACTCTCTTTCGATTCCCAAGTCGAGTCTCCTAGTTCAACATATCATGATTCCTTGAG..................................................................................................GTCGTTCAAGAAAAATGGGATGATCGAATTAGAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAGGTTAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAGAAATGTGGTGGAAATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTGAACCAAAATCAGGAGAATGTTTTGGTATGGGTGTTCATCTTTATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202675" ref_strand="+" ref_description="SGN-E202675 [cLEC-19-N9]">
      <seq>ttcaacatatcatgattccttgaggtcagaagcgaattcaaaatttcgtttcgttaatttcacttgtacattatcatctgatactcgatattataaataatattttgattcgattatatcaggtcgttcaagaaaaatgggatgatcgaattagaggaacgtaacaaagaacatgatttaatcaaggcaggttttcttagtggaatggggcaattaggaaaggaagttgaagttgtggctatacataagaattcatgttcaactatattagggcaagcgaggttagaaagttttcgtatttattccgaagcaatgcggaagaaatgtggtggaaatgctaatattaaatatgcttggtttggttcttccaaagatgaaatttgtaacataatttcacatggattttctacaattactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24102" stop="25119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24402" g_stop="24819" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E202675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24402" e_stop="24819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACATATCATGATTCCTTGAGGTCAGAAGCGAATTCAAAATTTCGTTTCGTTAATTTCACTTGTACATTATCATCTGATACTCGATATTATAAATAATATTTTGATTCGATTATATCAGGTCGTTCAAGAAAAATGGGATGATCGAATTAGAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAGGTTAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAGAAATGTGGTGGAAATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTG</genome_strand>
        <mrna_strand>TTCAACATATCATGATTCCTTGAGGTCAGAAGCGAATTCAAAATTTCGTTTCGTTAATTTCACTTGTACATTATCATCTGATACTCGATATTATAAATAATATTTTGATTCGATTATATCAGGTCGTTCAAGAAAAATGGGATGATCGAATTAGAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAGGTTAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAGAAATGTGGTGGAAATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213229" ref_strand="+" ref_description="SGN-E213229 [cLEC-72-F6]">
      <seq>tatacataagaattcatgttcaactatattagggcaagcgagatgaaatttgtaacataatttcacatggattttctacaattactgaaccaaaatcaggagaatgttttggtatgggtgttcatctttatcctgcaaatatccatggggtattatcggcattggaagatgagaatggattaaggcatatgttactttgtagagtaatattaggaaatacagaaataattgaggcttcatccaaacaatttcagccaacttgtcaagattttgactctggggttgacaattatctggctcctaaaacatacattatttggccttcttatatgaattctcatattttaccaaattttctagtaagttttagctgtactccaagttacttattaggtaagcaattcaatatttatgactttgttttatatcatgttaagtaatttggggctgatttgaatataaattatgcagatatcaaatattgcataattctctaactaatcatgtatcaaatgatagatcccacatttaattagtatatgagaatattcaagaatgtaatattattattttgtttattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24341" stop="25696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24641" g_stop="24682" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24683" i_stop="24774" i_length="92">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.002" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24775" g_stop="24880" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="148" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24881" i_stop="24961" i_length="81">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24962" g_stop="25396" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="583" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E213229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24641" e_stop="24682"/>
          <exon e_start="24775" e_stop="24880"/>
          <exon e_start="24962" e_stop="25396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAGGTTAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAGAAATGTGGTGGAAATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTGAACCAAAATCAGGAGAATGTTTTGGTATGGGTGTTCATCTTTATCCTGCAAATATCCATGGGTAAGCAATGATACATATATGTATAGTACTCTATTTCAATATATGTCACAGTTTTAATTTGTATTTTTTTTGGTGTTGAAGGGTATTATCGGCATTGGAAGATGAGAATGGATTAAGGCATATGTTACTTTGTAGAGTAATATTAGGAAATACAGAAATAATTGAGGCTTCATCCAAACAATTTCAGCCAACTTGTCAAGATTTTGACTCTGGGGTTGACAATTATCTGGCTCCTAAAACATACATTATTTGGCCTTCTTATATGAATTCTCATATTTTACCAAATTTTCTAGTAAGTTTTAGCTGTACTCCAAGTTACTTATTAGGTAAGCAATTCAATATTTATGACTTTGTTTTATATCATGTTAAGTAATTTGGGGCTGATTTGAATATAAATTATGCAGATATCAAATATTGCATAATTCTCTAACTAATCATGTATCAAATGATAGATCCCACATTTAATTAGTATATGAGAATATTCAAGAATGTAATATTATTATTTTGTTTATTTTT</genome_strand>
        <mrna_strand>TATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAG............................................................................................ATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTGAACCAAAATCAGGAGAATGTTTTGGTATGGGTGTTCATCTTTATCCTGCAAATATCCATGG.................................................................................GGTATTATCGGCATTGGAAGATGAGAATGGATTAAGGCATATGTTACTTTGTAGAGTAATATTAGGAAATACAGAAATAATTGAGGCTTCATCCAAACAATTTCAGCCAACTTGTCAAGATTTTGACTCTGGGGTTGACAATTATCTGGCTCCTAAAACATACATTATTTGGCCTTCTTATATGAATTCTCATATTTTACCAAATTTTCTAGTAAGTTTTAGCTGTACTCCAAGTTACTTATTAGGTAAGCAATTCAATATTTATGACTTTGTTTTATATCATGTTAAGTAATTTGGGGCTGATTTGAATATAAATTATGCAGATATCAAATATTGCATAATTCTCTAACTAATCATGTATCAAATGATAGATCCCACATTTAATTAGTATATGAGAATATTCAAGAATGTAATATTATTATTTTGTTTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349506" ref_strand="+" ref_description="SGN-E349506 [cTOS-1-M9]">
      <seq>gaaatacagaaataattgaggcttcatccaaacaatttcagccaacttgtcaagattttgactctggggttgacaattatctggctcctaaaacatacattatttggccttcttatatgaattctcatattttaccaaattttctagtaagttttagctgtactccaagttacttattaggtaagcaattcaatatttatgactttgttttatatcatgttaagtaatttggggctgatttgaatataaattatgcagatatcaaatattgcataattctctaactaatcatgtatcaaatgatagatcccacatttaattagtatatgagaatattcaagaatgtaatattattattttgtttattttttaggtgcttcttcgaaaatcaagaaggtttctccaaaatcgaattctcgtataaagtttcatgatttattgcgtgtgctttccaaatatttacatccatcgagaatggttttgatctcaaaatactatgaagattttcagaaaaataagatcacaaaattagtactcgttcgaaaattgaggcgaatagctggagatacatcgttaagagctgtcatgaaattgtatccaaatactactatttaagttgtgaatcagagaaaagagcttgtaaattccgtgagaacgaaggtgattaagttgctagcgatatgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24727" stop="26270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25027" g_stop="25536" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25537" i_stop="25634" i_length="98">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25635" g_stop="25740" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="616" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25741" i_stop="25896" i_length="156">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25897" g_stop="25970" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="690" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E349506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25027" e_stop="25536"/>
          <exon e_start="25635" e_stop="25740"/>
          <exon e_start="25897" e_stop="25970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATACAGAAATAATTGAGGCTTCATCCAAACAATTTCAGCCAACTTGTCAAGATTTTGACTCTGGGGTTGACAATTATCTGGCTCCTAAAACATACATTATTTGGCCTTCTTATATGAATTCTCATATTTTACCAAATTTTCTAGTAAGTTTTAGCTGTACTCCAAGTTACTTATTAGGTAAGCAATTCAATATTTATGACTTTGTTTTATATCATGTTAAGTAATTTGGGGCTGATTTGAATATAAATTATGCAGATATCAAATATTGCATAATTCTCTAACTAATCATGTATCAAATGATAGATCCCACATTTAATTAGTATATGAGAATATTCAAGAATGTAATATTATTATTTTGTTTATTTTTTAGGTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTACATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAGGTGAATTTTTTTTCTTAATTATCTAATTTTGTGTGATAAAATTTTTAATTTATTATTATTCTATGTGATTAATTATGTGATAATGTTTTAATGTATAGAAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAGGTACAGCTTCCTACCTATATATTATTTATAAACAACTTGGTGCATTTAATTAATGGGCCTTTAAACAACCATTTAAATAATTTTTCTTATTTTTATTTTTTCGAGATATTGTACGTTCGATTGCTTTTCTAATTTGATGATTTATATAATGTTTAGTTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATTAAGTTGCTAGCGATATGATGATGA</genome_strand>
        <mrna_strand>GAAATACAGAAATAATTGAGGCTTCATCCAAACAATTTCAGCCAACTTGTCAAGATTTTGACTCTGGGGTTGACAATTATCTGGCTCCTAAAACATACATTATTTGGCCTTCTTATATGAATTCTCATATTTTACCAAATTTTCTAGTAAGTTTTAGCTGTACTCCAAGTTACTTATTAGGTAAGCAATTCAATATTTATGACTTTGTTTTATATCATGTTAAGTAATTTGGGGCTGATTTGAATATAAATTATGCAGATATCAAATATTGCATAATTCTCTAACTAATCATGTATCAAATGATAGATCCCACATTTAATTAGTATATGAGAATATTCAAGAATGTAATATTATTATTTTGTTTATTTTTTAGGTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTACATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAG..................................................................................................AAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAG............................................................................................................................................................TTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATTAAGTTGCTAGCGATATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376458" ref_strand="+" ref_description="SGN-E376458 [TUS-17-H13](-)">
      <seq>aataattaaggcttcatccaaacaatttcagccaacttgtcaagattttgactctggggttgacaattatctggctcctaaaacatacattatttggccttcttatatgaattctcatattttaccaaattttctagtaagttttagctgtactccaagttacttattaggtgcttcttcgaaaatcaagaaggtttctccaaaatcgaattctcgtataaagtttcatgatttattgcgtgtgctttccaaatatttacatccatcgagaatggttttgatctcaaaatactatgaagattttcagaaaaataagatcacaaaattagtactcgttcgaaaattgaggcgaatagctggagatacatcgttaagagctgtcatgaaattgtatccaaatactactatttaagttgtgaatcaaagaaaagagcttgtaaattccgtgagaacgaaggtgattaagttgctagcgatatgatgatgacggagtttatcaaagtgtgaaaagaaaattttccctttgtttttcgactacaacaagttttttatttatgaagttgtatagtatttaagtgatgtaccaattgtattaaacgaataatattatttaatattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24737" stop="26404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25037" g_stop="25206" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25207" i_stop="25399" i_length="193">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25400" g_stop="25536" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="307" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25537" i_stop="25634" i_length="98">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25635" g_stop="25740" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="413" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25741" i_stop="25896" i_length="156">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25897" g_stop="26103" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="620" r_length="207" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="630"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E376458" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25037" e_stop="25206"/>
          <exon e_start="25400" e_stop="25536"/>
          <exon e_start="25635" e_stop="25740"/>
          <exon e_start="25897" e_stop="26103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATTGAGGCTTCATCCAAACAATTTCAGCCAACTTGTCAAGATTTTGACTCTGGGGTTGACAATTATCTGGCTCCTAAAACATACATTATTTGGCCTTCTTATATGAATTCTCATATTTTACCAAATTTTCTAGTAAGTTTTAGCTGTACTCCAAGTTACTTATTAGGTAAGCAATTCAATATTTATGACTTTGTTTTATATCATGTTAAGTAATTTGGGGCTGATTTGAATATAAATTATGCAGATATCAAATATTGCATAATTCTCTAACTAATCATGTATCAAATGATAGATCCCACATTTAATTAGTATATGAGAATATTCAAGAATGTAATATTATTATTTTGTTTATTTTTTAGGTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTACATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAGGTGAATTTTTTTTCTTAATTATCTAATTTTGTGTGATAAAATTTTTAATTTATTATTATTCTATGTGATTAATTATGTGATAATGTTTTAATGTATAGAAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAGGTACAGCTTCCTACCTATATATTATTTATAAACAACTTGGTGCATTTAATTAATGGGCCTTTAAACAACCATTTAAATAATTTTTCTTATTTTTATTTTTTCGAGATATTGTACGTTCGATTGCTTTTCTAATTTGATGATTTATATAATGTTTAGTTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATTAAGTTGCTAGCGATATGATGATGACGGAGTTTATCAAAGTGTGAAAAGAAAATTTTCCCTTTGTTTTTCGACTACAACAAGTTTTTTATTTATGAAGTTGTATAGTATTTAAGTGATGTACCAATTGTATTAAACGAATAATATTATTTAATATTGA</genome_strand>
        <mrna_strand>AATAATTAAGGCTTCATCCAAACAATTTCAGCCAACTTGTCAAGATTTTGACTCTGGGGTTGACAATTATCTGGCTCCTAAAACATACATTATTTGGCCTTCTTATATGAATTCTCATATTTTACCAAATTTTCTAGTAAGTTTTAGCTGTACTCCAAGTTACTTATTAG.................................................................................................................................................................................................GTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTACATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAG..................................................................................................AAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAG............................................................................................................................................................TTGTGAATCAAAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATTAAGTTGCTAGCGATATGATGATGACGGAGTTTATCAAAGTGTGAAAAGAAAATTTTCCCTTTGTTTTTCGACTACAACAAGTTTTTTATTTATGAAGTTGTATAGTATTTAAGTGATGTACCAATTGTATTAAACGAATAATATTATTTAATATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367945" ref_strand="+" ref_description="SGN-E367945 [TUS-22-H13](-)">
      <seq>aatttatctgggtcctaaaaacatacattatttggcctttttaatatgaattctcatattttaccaaatttttctagtaagttttagctgtactccaagttacttattaaggtgcttcttcgaaaatcaagaaggtttctccaaaatcgaattctcgtataaagtttcatgatttattgcgtgtgctttccaaagagggagcatccatcgagaatggttttgatctcaaaatactatgaagattttcagaaaaataagatcccaaaattagtactcgttcgaaaattgaggcgaatagctggagatacatcgttaagagctgtcatgaaattgtatccaaatactactatttaagttgtgaatcagagaaaagagcttgtaaattccgtgagaacgaaggtgattaagttgctagcgatatgatgatgacggagtttatcaaagtgtgaaaagaaaattttccctttgtttttcgactacaacaagttttttatttatgaagttgtatagtatttaagtgatgtaccaattgtattaaacgaattatattatataatattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24801" stop="26404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25100" g_stop="25206" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25207" i_stop="25399" i_length="193">
            <donor d_prob="0.795" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25400" g_stop="25536" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="249" r_length="138" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25537" i_stop="25634" i_length="98">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25635" g_stop="25740" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="355" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25741" i_stop="25896" i_length="156">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25897" g_stop="26103" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="562" r_length="207" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="563" polyA_stop="572"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E367945" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25100" e_stop="25206"/>
          <exon e_start="25400" e_stop="25536"/>
          <exon e_start="25635" e_stop="25740"/>
          <exon e_start="25897" e_stop="26103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTATCTGGCTCCTAA-AACATACATTATTTGGCCTTCTT-ATATGAATTCTCATATTTTACCAAA-TTTTCTAGTAAGTTTTAGCTGTACTCCAAGTTACTTATT-AGGTAAGCAATTCAATATTTATGACTTTGTTTTATATCATGTTAAGTAATTTGGGGCTGATTTGAATATAAATTATGCAGATATCAAATATTGCATAATTCTCTAACTAATCATGTATCAAATGATAGATCCCACATTTAATTAGTATATGAGAATATTCAAGAATGTAATATTATTATTTTGTTTATTTTTTAGGTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTA-CATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAGGTGAATTTTTTTTCTTAATTATCTAATTTTGTGTGATAAAATTTTTAATTTATTATTATTCTATGTGATTAATTATGTGATAATGTTTTAATGTATAGAAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAGGTACAGCTTCCTACCTATATATTATTTATAAACAACTTGGTGCATTTAATTAATGGGCCTTTAAACAACCATTTAAATAATTTTTCTTATTTTTATTTTTTCGAGATATTGTACGTTCGATTGCTTTTCTAATTTGATGATTTATATAATGTTTAGTTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATTAAGTTGCTAGCGATATGATGATGACGGAGTTTATCAAAGTGTGAAAAGAAAATTTTCCCTTTGTTTTTCGACTACAACAAGTTTTTTATTTATGAAGTTGTATAGTATTTAAGTGATGTACCAATTGTATTAAACGAATAATATTATTTAATATTGA</genome_strand>
        <mrna_strand>AATTTATCTGGGTCCTAAAAACATACATTATTTGGCCTTTTTAATATGAATTCTCATATTTTACCAAATTTTTCTAGTAAGTTTTAGCTGTACTCCAAGTTACTTATTAAG.................................................................................................................................................................................................GTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAAGAGGGAGCATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAG..................................................................................................AAAAATAAGATCCCAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAG............................................................................................................................................................TTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATTAAGTTGCTAGCGATATGATGATGACGGAGTTTATCAAAGTGTGAAAAGAAAATTTTCCCTTTGTTTTTCGACTACAACAAGTTTTTTATTTATGAAGTTGTATAGTATTTAAGTGATGTACCAATTGTATTAAACGAATTATATTATATAATATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350997" ref_strand="+" ref_description="SGN-E350997 [cTOS-6-G1]">
      <seq>tttggccttcttatatgaattctcatattttaccaaattttctagtaagttttagctgtactccaagttacttattaggtgcttcttcgaaaatcaagaaggtttctccaaaatcgaattctcgtataaagtttcatgatttattgcgtgtgctttccaaatatttacatccatcgagaatggttttgatctcaaaatactatgaagattttcagaaaaataagatcacaaaattagtactcgttcgaaaattgaggcgaatagctggagatacatcgttaagagctgtcatgaaattgtatccaaatactactatttaagttgtgaatcagagaaaagagcttgtaaattccgtgagaacgaaggtgattaagttgctagcgatatgatgatgacggagtttatcaaagtgtgaaaagaaaattttccctttgtttttcgactacaacaagttttttatttatgaagttgtatagtatttaagtgatgtaccaattgtattaaacgaataatattatttaatattgaattgtgatgtgacttatttgagaaaaaaaaaaaaaaaaaaaactcggactagttctctctctcctacaattctggaaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24829" stop="26433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25129" g_stop="25206" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25207" i_stop="25399" i_length="193">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25400" g_stop="25536" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="215" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25537" i_stop="25634" i_length="98">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25635" g_stop="25740" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="321" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25741" i_stop="25896" i_length="156">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25897" g_stop="26128" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="553" r_length="232" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="571"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E350997" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25129" e_stop="25206"/>
          <exon e_start="25400" e_stop="25536"/>
          <exon e_start="25635" e_stop="25740"/>
          <exon e_start="25897" e_stop="26128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCCTTCTTATATGAATTCTCATATTTTACCAAATTTTCTAGTAAGTTTTAGCTGTACTCCAAGTTACTTATTAGGTAAGCAATTCAATATTTATGACTTTGTTTTATATCATGTTAAGTAATTTGGGGCTGATTTGAATATAAATTATGCAGATATCAAATATTGCATAATTCTCTAACTAATCATGTATCAAATGATAGATCCCACATTTAATTAGTATATGAGAATATTCAAGAATGTAATATTATTATTTTGTTTATTTTTTAGGTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTACATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAGGTGAATTTTTTTTCTTAATTATCTAATTTTGTGTGATAAAATTTTTAATTTATTATTATTCTATGTGATTAATTATGTGATAATGTTTTAATGTATAGAAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAGGTACAGCTTCCTACCTATATATTATTTATAAACAACTTGGTGCATTTAATTAATGGGCCTTTAAACAACCATTTAAATAATTTTTCTTATTTTTATTTTTTCGAGATATTGTACGTTCGATTGCTTTTCTAATTTGATGATTTATATAATGTTTAGTTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATTAAGTTGCTAGCGATATGATGATGACGGAGTTTATCAAAGTGTGAAAAGAAAATTTTCCCTTTGTTTTTCGACTACAACAAGTTTTTTATTTATGAAGTTGTATAGTATTTAAGTGATGTACCAATTGTATTAAACGAATAATATTATTTAATATTGAATTGTGATGTGACTTATTTGAGAAC</genome_strand>
        <mrna_strand>TTTGGCCTTCTTATATGAATTCTCATATTTTACCAAATTTTCTAGTAAGTTTTAGCTGTACTCCAAGTTACTTATTAG.................................................................................................................................................................................................GTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTACATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAG..................................................................................................AAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAG............................................................................................................................................................TTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATTAAGTTGCTAGCGATATGATGATGACGGAGTTTATCAAAGTGTGAAAAGAAAATTTTCCCTTTGTTTTTCGACTACAACAAGTTTTTTATTTATGAAGTTGTATAGTATTTAAGTGATGTACCAATTGTATTAAACGAATAATATTATTTAATATTGAATTGTGATGTGACTTATTTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252497" ref_strand="+" ref_description="SGN-E252497 [cLEG-20-E16]">
      <seq>ggcaattcaatatttatgactttgttttatatcatgttaagtaatttggggctgattggaatataaattatgcagatatcaaatattgcataattctctaactaatcatgtatcaaatgatagatcccacatttaattagtatatgagaatattcaagaatgtaatattattattttgtttattttttaagagcttcttcgaaaatcaagaaggtttctccaaaatcgaattctcgtataaagtttcatgatttattgcgtgtgctttccaaatatttacatccatcgagaatggttttgatctcaaaatactatgaagattttcagaaaaataagatcacaaaattagtactcgttcgaaaattgaggcgaatagctggagatacatcgttaagagctgtcatgaaattgtatccaaatactactatttaagttgtgaatcagagaaaagagcttgtaaattccgtgagaacgaaggtgattaagttgctagcgatatgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24911" stop="26270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25210" g_stop="25536" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25537" i_stop="25634" i_length="98">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25635" g_stop="25740" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="433" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25741" i_stop="25896" i_length="156">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25897" g_stop="25970" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="507" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E252497" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25210" e_stop="25536"/>
          <exon e_start="25635" e_stop="25740"/>
          <exon e_start="25897" e_stop="25970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTCAATATTTATGACTTTGTTTTATATCATGTTAAGTAATTTGGGGCTGATTTGAATATAAATTATGCAGATATCAAATATTGCATAATTCTCTAACTAATCATGTATCAAATGATAGATCCCACATTTAATTAGTATATGAGAATATTCAAGAATGTAATATTATTATTTTGTTTATTTTTTAGGTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTACATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAGGTGAATTTTTTTTCTTAATTATCTAATTTTGTGTGATAAAATTTTTAATTTATTATTATTCTATGTGATTAATTATGTGATAATGTTTTAATGTATAGAAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAGGTACAGCTTCCTACCTATATATTATTTATAAACAACTTGGTGCATTTAATTAATGGGCCTTTAAACAACCATTTAAATAATTTTTCTTATTTTTATTTTTTCGAGATATTGTACGTTCGATTGCTTTTCTAATTTGATGATTTATATAATGTTTAGTTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATTAAGTTGCTAGCGATATGATGATGA</genome_strand>
        <mrna_strand>GGCAATTCAATATTTATGACTTTGTTTTATATCATGTTAAGTAATTTGGGGCTGATTGGAATATAAATTATGCAGATATCAAATATTGCATAATTCTCTAACTAATCATGTATCAAATGATAGATCCCACATTTAATTAGTATATGAGAATATTCAAGAATGTAATATTATTATTTTGTTTATTTTTTAAGAGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTACATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAG..................................................................................................AAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAG............................................................................................................................................................TTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATTAAGTTGCTAGCGATATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375202" ref_strand="+" ref_description="SGN-E375202 [TUS-34-N23]">
      <seq>caattcaatatttatgactttgttttatatcatgttaagtaatttggggctgatttgaatataaattatgcagatatcaaatattgcataattctctaactaatcatgtatcaaatgatagatcccacatttaattagtatatgagaatattcaagaatgtaatattattattttgtttattttttaggtgcttcttcgaaaatcaagaaggtttctccaaaatcgaattctcgtataaagtttcatgatttattgcgtgtgctttccaaatatttacatccatcgagaatggttttgatctcaaaatactatgaagattttcagaaaaataagatcacaaaattagtactcgttcgaaaattgaggcgaatagctggagatacatcgttaagagctgtcatgaaattgtatccaaatactactatttaagttgtgaatcagagaaaagagcttgtaaattccgtgagaacgaaggtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24912" stop="26246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25212" g_stop="25536" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25537" i_stop="25634" i_length="98">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25635" g_stop="25740" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="431" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25741" i_stop="25896" i_length="156">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25897" g_stop="25946" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="481" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E375202" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25212" e_stop="25536"/>
          <exon e_start="25635" e_stop="25740"/>
          <exon e_start="25897" e_stop="25946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCAATATTTATGACTTTGTTTTATATCATGTTAAGTAATTTGGGGCTGATTTGAATATAAATTATGCAGATATCAAATATTGCATAATTCTCTAACTAATCATGTATCAAATGATAGATCCCACATTTAATTAGTATATGAGAATATTCAAGAATGTAATATTATTATTTTGTTTATTTTTTAGGTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTACATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAGGTGAATTTTTTTTCTTAATTATCTAATTTTGTGTGATAAAATTTTTAATTTATTATTATTCTATGTGATTAATTATGTGATAATGTTTTAATGTATAGAAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAGGTACAGCTTCCTACCTATATATTATTTATAAACAACTTGGTGCATTTAATTAATGGGCCTTTAAACAACCATTTAAATAATTTTTCTTATTTTTATTTTTTCGAGATATTGTACGTTCGATTGCTTTTCTAATTTGATGATTTATATAATGTTTAGTTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATT</genome_strand>
        <mrna_strand>CAATTCAATATTTATGACTTTGTTTTATATCATGTTAAGTAATTTGGGGCTGATTTGAATATAAATTATGCAGATATCAAATATTGCATAATTCTCTAACTAATCATGTATCAAATGATAGATCCCACATTTAATTAGTATATGAGAATATTCAAGAATGTAATATTATTATTTTGTTTATTTTTTAGGTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTACATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAG..................................................................................................AAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAG............................................................................................................................................................TTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266042" ref_strand="+" ref_description="SGN-E266042 [cLEI-6-A17]">
      <seq>aaatgttgttctcttctgattccgaagtcgagtctcctagtccaaggacaaattatcatttcaggtcgttgaagagcaatgaagtaatgaaactggaagaaggtgaccaagatcatgatttgattaaggcaggttttcttagtggaatgggacaattgggaaatgaaattgaagttgtggctgtacataaaaattcatgttccactatattagggcaagcgaggtcagaaagttttcgtatttattccgaagcaatgcggaaaaaatgtagtggagatgctaatattaaatatgcttggtttggttcttccaaagatgaaatttgtaatattatttcacatggattttcaacaattatggaacctaattatggggattgttttggcaatggtgtccatctttatcctgcaaatatcgatggggtattttcggcagtggaagatgagaatggattaagacatatgttactttgcagagtaatattaggaaatacagaagttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27777" stop="29667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28077" g_stop="28140" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28141" i_stop="28218" i_length="78">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28219" g_stop="28575" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="421" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28576" i_stop="29284" i_length="709">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29285" g_stop="29367" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="504" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E266042" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28077" e_stop="28140"/>
          <exon e_start="28219" e_stop="28575"/>
          <exon e_start="29285" e_stop="29367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTGTTCTCTTCTGATTCCGAAGTCGAGTCTCCTAGTCCAAGGACAAATTATCATTTCAGGTCAGAAGTGAATTCAGAATTTTAGTTTCTTTTTCAAGTTATTTTTCACGTATGTTACATTTGTTAGTACTGATTTAGGTCGTTGAAGAGCAATGAAGTAATGAAACTGGAAGAAGGTGACCAAGATCATGATTTGATTAAGGCAGGTTTTCTTAGTGGAATGGGACAATTGGGAAATGAAATTGAAGTTGTGGCTGTACATAAAAATTCATGTTCCACTATATTAGGGCAAGCGAGGTCAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAAAAATGTAGTGGAGATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAATATTATTTCACATGGATTTTCAACAATTATGGAACCTAATTATGGGGATTGTTTTGGCAATGGTGTCCATCTTTATCCTGCAAATATCGATGGGTAAGAAATTAATCATTTTAGTAACTTATTGTTTCTTTGTTTCATCTTTCTATTTTTGAAAATTAATTATATATGTAACGACATTATTGTCATAATATCTGTCAAAATTAACATGTGTCATATTTCTTGAACATAACAACAGATCACACACCGCCACATAATATATAAATTGGGAAAAGTCAAACGTCCCTTTACATATCTTAAATAATTAGTGTTATACTTTTAATTTTAGTATGCCATTTTGCTTTCGCTTCAAATATGCCAATACTATTTACAATTCCTTTTTAAGTTCACTAGAAAATTCATGTTAAATATCAAATTTAGCTAATTTTATATTTTTTGACAGACTTATCGAAGAAATTCAAATGTAATTTCTAGAGAAGAAAATGATGATAAAATAAATGGGGTTAAACTAGTGGTTTTTAAAAAATGGTATATTTAATTGAATTGTGTGATTTTAAGCTTGAAGTGTATATATGATAAGTTATAATAAAAATGGTATATTTTAAACTAAAATATAACGATGTATATATTTAAACTATTTTCAACAACAGTGATATGATATATTTGATGTATATAAAATGAAACAAATATATCAAGAGTCCTGGACAAGTCATTGTTAACTCTTAAGTATCGAATTAGACATTTGATTACTTCAAATGTTTGAGATTAATTAATTAATTTCTTTGACTTTTTTGTTGGATTGAAGGGTATTTTCGGCAGTGGAAGATGAGAATGGATTAAGACATATGTTACTTTGCAGAGTAATATTAGGAAATACAGAAGTAATTG</genome_strand>
        <mrna_strand>AAATGTTGTTCTCTTCTGATTCCGAAGTCGAGTCTCCTAGTCCAAGGACAAATTATCATTTCAG..............................................................................GTCGTTGAAGAGCAATGAAGTAATGAAACTGGAAGAAGGTGACCAAGATCATGATTTGATTAAGGCAGGTTTTCTTAGTGGAATGGGACAATTGGGAAATGAAATTGAAGTTGTGGCTGTACATAAAAATTCATGTTCCACTATATTAGGGCAAGCGAGGTCAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAAAAATGTAGTGGAGATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAATATTATTTCACATGGATTTTCAACAATTATGGAACCTAATTATGGGGATTGTTTTGGCAATGGTGTCCATCTTTATCCTGCAAATATCGATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTCGGCAGTGGAAGATGAGAATGGATTAAGACATATGTTACTTTGCAGAGTAATATTAGGAAATACAGAAGTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303054" ref_strand="+" ref_description="SGN-E303054 [cLEW-26-F1]">
      <seq>tcatttatttcaaacccccaatcctcatccttcttaaaaactatatactaaaaatataaatattccttcaaattttcaaaattctctctttctaattttcttcaaaaatatattatattcagatttctacagtaaaatcaaattttgggttttggttttttgaagaaaatggattctgaaacgttaacagattcgtataatgaagaaatgatgggaacattaaccggagattttacagagcagttgagtatgaaagaacagataatcgaagaagattatgaggatgacgaggaagaggaggttgaagatgaagaagaagagttctctttcgcgtgtgggatagacgcgccgccgatagccgcggatgaggtgttttacaatggtcaaattcgacctctgtttccattgtttaatcagagtcttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="47712" stop="48739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48012" g_stop="48439" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E303054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48012" e_stop="48439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTATTTCAAACCCCCAATCCTCATCCTTCTTAAAAACTATATACTAAAAATATAAATATTCCTTCAAATTTTCAAAATTCTCTCTTTCTAATTTTCTTCAAAAATATATTATATTCAGATTTCTACAGTAAAATCAAATTTTGGGTTTTGGTTTTTTGAAGAAAATGGATTCTGAAACGTTAACAGATTCGTATAATGAAGAAATGATGGGAACATTAACCGGAGATTTTACAGAGCAGTTGAGTATGAAAGAACAGATAATCGAAGAAGATTATGAGGATGACGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGAGTTCTCTTTCGCGTGTGGGATAGACGCGCCGCCGATAGCCGCGGATGAGGTGTTTTACAATGGTCAAATTCGACCTCTGTTTCCATTGTTTAATCAGAGTCTTCTTTT</genome_strand>
        <mrna_strand>TCATTTATTTCAAACCCCCAATCCTCATCCTTCTTAAAAACTATATACTAAAAATATAAATATTCCTTCAAATTTTCAAAATTCTCTCTTTCTAATTTTCTTCAAAAATATATTATATTCAGATTTCTACAGTAAAATCAAATTTTGGGTTTTGGTTTTTTGAAGAAAATGGATTCTGAAACGTTAACAGATTCGTATAATGAAGAAATGATGGGAACATTAACCGGAGATTTTACAGAGCAGTTGAGTATGAAAGAACAGATAATCGAAGAAGATTATGAGGATGACGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGAGTTCTCTTTCGCGTGTGGGATAGACGCGCCGCCGATAGCCGCGGATGAGGTGTTTTACAATGGTCAAATTCGACCTCTGTTTCCATTGTTTAATCAGAGTCTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336997" ref_strand="+" ref_description="SGN-E336997 [cTOE-20-F1]">
      <seq>taaaaactatatactaaaaatataaatattccttcaaatttgcaaaattctctctttctaattttcttcaaaaatatattatattcagatttctacagtaaaatcaaattttgggttttggttttttgaagaaaatggattctgaaacgttaacagattcgtataatgaagaaatgatgggaacattaaccggagattttacagagcagttgagtatgaaagaacagataatcgaagaagattatgaggatgacgaggaagaggaggttgaagatgaagaagaagagttctctttcgcgtgtgggatagacgcgccgccgatagccgcggatgaggtgttttacaatggtcaaattcgacctctgtttccattgtttaatcagagtcttcttttatctgacgaagaattggaagctttgaaggaacaattaccgatcaggccaccggtgaagaagatatttatacaaacggaagacaacccaattccggcgagttcaaattcgttaacggagagtgaagaaatcgtcggacccttttgtgaatggtcaaaaaataaagcaattgaagcaacatcggacaatcctgaggtttgtaaaaagagtaattcaaccggattttcaaagttatggagattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="47746" stop="48981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48046" g_stop="48681" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E336997" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48046" e_stop="48681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACTATATACTAAAAATATAAATATTCCTTCAAATTTTCAAAATTCTCTCTTTCTAATTTTCTTCAAAAATATATTATATTCAGATTTCTACAGTAAAATCAAATTTTGGGTTTTGGTTTTTTGAAGAAAATGGATTCTGAAACGTTAACAGATTCGTATAATGAAGAAATGATGGGAACATTAACCGGAGATTTTACAGAGCAGTTGAGTATGAAAGAACAGATAATCGAAGAAGATTATGAGGATGACGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGAGTTCTCTTTCGCGTGTGGGATAGACGCGCCGCCGATAGCCGCGGATGAGGTGTTTTACAATGGTCAAATTCGACCTCTGTTTCCATTGTTTAATCAGAGTCTTCTTTTATCTGACGAAGAATTGGAAGCTTTGAAGGAACAATTACCGATCAGGCCACCGGTGAAGAAGATATTTATACAAACGGAAGACAACCCAATTCCGGCGAGTTCAAATTCGTTAACGGAGAGTGAAGAAATCGTCGGACCCTTTTGTGAATGGTCAAAAAATAAAGCAATTGAAGCAACATCGGACAATCCTGAGGTTTGTAAAAAGAGTAATTCAACCGGATTTTCAAAGTTATGGAGATTTA</genome_strand>
        <mrna_strand>TAAAAACTATATACTAAAAATATAAATATTCCTTCAAATTTGCAAAATTCTCTCTTTCTAATTTTCTTCAAAAATATATTATATTCAGATTTCTACAGTAAAATCAAATTTTGGGTTTTGGTTTTTTGAAGAAAATGGATTCTGAAACGTTAACAGATTCGTATAATGAAGAAATGATGGGAACATTAACCGGAGATTTTACAGAGCAGTTGAGTATGAAAGAACAGATAATCGAAGAAGATTATGAGGATGACGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGAGTTCTCTTTCGCGTGTGGGATAGACGCGCCGCCGATAGCCGCGGATGAGGTGTTTTACAATGGTCAAATTCGACCTCTGTTTCCATTGTTTAATCAGAGTCTTCTTTTATCTGACGAAGAATTGGAAGCTTTGAAGGAACAATTACCGATCAGGCCACCGGTGAAGAAGATATTTATACAAACGGAAGACAACCCAATTCCGGCGAGTTCAAATTCGTTAACGGAGAGTGAAGAAATCGTCGGACCCTTTTGTGAATGGTCAAAAAATAAAGCAATTGAAGCAACATCGGACAATCCTGAGGTTTGTAAAAAGAGTAATTCAACCGGATTTTCAAAGTTATGGAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321374" ref_strand="+" ref_description="SGN-E321374 [cTOB-23-L22]">
      <seq>tatatactaaaaatataaatattccttcaaattttcaaaattctctctttctaattttcttcaaaaatatattatattcagatttctacagtaaaatcaaattttgggttttggttttttgaagaaaatggattctgaaacgttaacagattcgtataatgaagaaatgatgggaacattaaccggagattttacagagcagttgagtatgaaagaacagataatcgaagaagattatgaggatgacgaggaagaggaggttgaagatgaagaagaagagttctctttcgcgtgtgggatagacgcgccgccgatagccgcggatgaggtgttttacaatggtcaaattcgacctctgtttccattgtttaatcagagtcttcttttatctgacgaagaattggaagctttgaaggaacaattaccgatcaggccaccggtgaagaagatatttatacaaacggaagacaacccaattccggcgagttcaaattcgttaacggagagtgaagaaatcgtcggacccttttgtgaatggtcaaaaaataaagcaattgaagcaacatcggacaatcctgaggtttgtaaaaagagtaattcaaccggattttcaaagttatggagatttaaagactttcttcaccggagtaacagtgacggaagagatacctttgtattctttaaacccacactccggcagcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="47753" stop="49057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48053" g_stop="48757" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E321374" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48053" e_stop="48757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATACTAAAAATATAAATATTCCTTCAAATTTTCAAAATTCTCTCTTTCTAATTTTCTTCAAAAATATATTATATTCAGATTTCTACAGTAAAATCAAATTTTGGGTTTTGGTTTTTTGAAGAAAATGGATTCTGAAACGTTAACAGATTCGTATAATGAAGAAATGATGGGAACATTAACCGGAGATTTTACAGAGCAGTTGAGTATGAAAGAACAGATAATCGAAGAAGATTATGAGGATGACGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGAGTTCTCTTTCGCGTGTGGGATAGACGCGCCGCCGATAGCCGCGGATGAGGTGTTTTACAATGGTCAAATTCGACCTCTGTTTCCATTGTTTAATCAGAGTCTTCTTTTATCTGACGAAGAATTGGAAGCTTTGAAGGAACAATTACCGATCAGGCCACCGGTGAAGAAGATATTTATACAAACGGAAGACAACCCAATTCCGGCGAGTTCAAATTCGTTAACGGAGAGTGAAGAAATCGTCGGACCCTTTTGTGAATGGTCAAAAAATAAAGCAATTGAAGCAACATCGGACAATCCTGAGGTTTGTAAAAAGAGTAATTCAACCGGATTTTCAAAGTTATGGAGATTTAAAGACTTTCTTCACCGGAGTAACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAA</genome_strand>
        <mrna_strand>TATATACTAAAAATATAAATATTCCTTCAAATTTTCAAAATTCTCTCTTTCTAATTTTCTTCAAAAATATATTATATTCAGATTTCTACAGTAAAATCAAATTTTGGGTTTTGGTTTTTTGAAGAAAATGGATTCTGAAACGTTAACAGATTCGTATAATGAAGAAATGATGGGAACATTAACCGGAGATTTTACAGAGCAGTTGAGTATGAAAGAACAGATAATCGAAGAAGATTATGAGGATGACGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGAGTTCTCTTTCGCGTGTGGGATAGACGCGCCGCCGATAGCCGCGGATGAGGTGTTTTACAATGGTCAAATTCGACCTCTGTTTCCATTGTTTAATCAGAGTCTTCTTTTATCTGACGAAGAATTGGAAGCTTTGAAGGAACAATTACCGATCAGGCCACCGGTGAAGAAGATATTTATACAAACGGAAGACAACCCAATTCCGGCGAGTTCAAATTCGTTAACGGAGAGTGAAGAAATCGTCGGACCCTTTTGTGAATGGTCAAAAAATAAAGCAATTGAAGCAACATCGGACAATCCTGAGGTTTGTAAAAAGAGTAATTCAACCGGATTTTCAAAGTTATGGAGATTTAAAGACTTTCTTCACCGGAGTAACAGTGACGGAAGAGATACCTTTGTATTCTTTAAACCCAC-ACTCCGGCAGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323062" ref_strand="+" ref_description="SGN-E323062 [cTOB-28-C2]">
      <seq>tatatactaaaaatataaatattccttcaaattttcaaaattctctctttctaattttcttcaaaaatatattatattcagatttctacagtaaaatcaaattttgggttttggttttttgaagaaaatggattctgaaacgttaacagattcgtataatgaagaaatgatgggaacattaaccggagattttacagagcagttgagtatgaaagaacagataatcgaagaagattatgaggatgacgaggaagaggaggttgaagatgaagaagaagagttctctttcgcgtgtgggatagacgcgccgccgatagccgcggatgaggtgttttacaatggtcaaattcgacctctgtttccattgtttaatcagagtcttcttttatctgacgaagaattggaagctttgaaggaacaattaccgatcaggccaccggtgaagaagatatttatacaaacggaagacaacccaattccggcgagttcaaattcgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="47753" stop="48852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48053" g_stop="48552" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E323062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48053" e_stop="48552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATACTAAAAATATAAATATTCCTTCAAATTTTCAAAATTCTCTCTTTCTAATTTTCTTCAAAAATATATTATATTCAGATTTCTACAGTAAAATCAAATTTTGGGTTTTGGTTTTTTGAAGAAAATGGATTCTGAAACGTTAACAGATTCGTATAATGAAGAAATGATGGGAACATTAACCGGAGATTTTACAGAGCAGTTGAGTATGAAAGAACAGATAATCGAAGAAGATTATGAGGATGACGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGAGTTCTCTTTCGCGTGTGGGATAGACGCGCCGCCGATAGCCGCGGATGAGGTGTTTTACAATGGTCAAATTCGACCTCTGTTTCCATTGTTTAATCAGAGTCTTCTTTTATCTGACGAAGAATTGGAAGCTTTGAAGGAACAATTACCGATCAGGCCACCGGTGAAGAAGATATTTATACAAACGGAAGACAACCCAATTCCGGCGAGTTCAAATTCGTTAA</genome_strand>
        <mrna_strand>TATATACTAAAAATATAAATATTCCTTCAAATTTTCAAAATTCTCTCTTTCTAATTTTCTTCAAAAATATATTATATTCAGATTTCTACAGTAAAATCAAATTTTGGGTTTTGGTTTTTTGAAGAAAATGGATTCTGAAACGTTAACAGATTCGTATAATGAAGAAATGATGGGAACATTAACCGGAGATTTTACAGAGCAGTTGAGTATGAAAGAACAGATAATCGAAGAAGATTATGAGGATGACGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGAGTTCTCTTTCGCGTGTGGGATAGACGCGCCGCCGATAGCCGCGGATGAGGTGTTTTACAATGGTCAAATTCGACCTCTGTTTCCATTGTTTAATCAGAGTCTTCTTTTATCTGACGAAGAATTGGAAGCTTTGAAGGAACAATTACCGATCAGGCCACCGGTGAAGAAGATATTTATACAAACGGAAGACAACCCAATTCCGGCGAGTTCAAATTCGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726190" ref_strand="+" ref_description="SGN-E726190 [LA11AD05]">
      <seq>aaaaatataaatattccttcaaattttcaaaattctctctttctaattttcttcaaaaatatattatattcagatttctacagtaaaatcaaattttgggttttggttttttgaagaaaatggattctgaaacgttaacagattcgtataatgaagaaatgatgggaacattaaccggagattttacagagcagttgagtatgaaagaacagataatcgaagaagattatgaggatgacgaggaagaggaggttgaagatgaagaagaagagttctctttcgcgtgtgggatagacgcgccgccgatagccgcggatgaggtgttttacaatggtcaaattcgacctctgtttccattgtttaatcagagtcttcttttatctgacgaagaattggaagctttgaaggaacaattaccgatcaggccaccggtgaagaagatatttatacaaacggaagacaacccaattccggcgagttcaaattcgttaacggagagtgaagaaatcgtcggacccttttgtgaatggtcaaaaaataaagcaattgaagcaacatcggacaatcctgaggtttgtaaaaagagtaattcaaccggattttcaaagttatggagatttaaagactttcttcaccggagtaacagtgacggaagagatacctttgtattcttaaacccaacaactccggcagcgaaagtagaggaaaaaattgttcggacagatgaaacgacaacgtcggagaagaaaaagaaggagatctccggcgaagtgaaagtcatcggaaaagtaacgaagaagatgaagaaggttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="47761" stop="49176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48061" g_stop="48876" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="816" r_length="816" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E726190" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48061" e_stop="48876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATAAATATTCCTTCAAATTTTCAAAATTCTCTCTTTCTAATTTTCTTCAAAAATATATTATATTCAGATTTCTACAGTAAAATCAAATTTTGGGTTTTGGTTTTTTGAAGAAAATGGATTCTGAAACGTTAACAGATTCGTATAATGAAGAAATGATGGGAACATTAACCGGAGATTTTACAGAGCAGTTGAGTATGAAAGAACAGATAATCGAAGAAGATTATGAGGATGACGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGAGTTCTCTTTCGCGTGTGGGATAGACGCGCCGCCGATAGCCGCGGATGAGGTGTTTTACAATGGTCAAATTCGACCTCTGTTTCCATTGTTTAATCAGAGTCTTCTTTTATCTGACGAAGAATTGGAAGCTTTGAAGGAACAATTACCGATCAGGCCACCGGTGAAGAAGATATTTATACAAACGGAAGACAACCCAATTCCGGCGAGTTCAAATTCGTTAACGGAGAGTGAAGAAATCGTCGGACCCTTTTGTGAATGGTCAAAAAATAAAGCAATTGAAGCAACATCGGACAATCCTGAGGTTTGTAAAAAGAGTAATTCAACCGGATTTTCAAAGTTATGGAGATTTAAAGACTTTCTTCACCGGAGTAACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGA</genome_strand>
        <mrna_strand>AAAAATATAAATATTCCTTCAAATTTTCAAAATTCTCTCTTTCTAATTTTCTTCAAAAATATATTATATTCAGATTTCTACAGTAAAATCAAATTTTGGGTTTTGGTTTTTTGAAGAAAATGGATTCTGAAACGTTAACAGATTCGTATAATGAAGAAATGATGGGAACATTAACCGGAGATTTTACAGAGCAGTTGAGTATGAAAGAACAGATAATCGAAGAAGATTATGAGGATGACGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGAGTTCTCTTTCGCGTGTGGGATAGACGCGCCGCCGATAGCCGCGGATGAGGTGTTTTACAATGGTCAAATTCGACCTCTGTTTCCATTGTTTAATCAGAGTCTTCTTTTATCTGACGAAGAATTGGAAGCTTTGAAGGAACAATTACCGATCAGGCCACCGGTGAAGAAGATATTTATACAAACGGAAGACAACCCAATTCCGGCGAGTTCAAATTCGTTAACGGAGAGTGAAGAAATCGTCGGACCCTTTTGTGAATGGTCAAAAAATAAAGCAATTGAAGCAACATCGGACAATCCTGAGGTTTGTAAAAAGAGTAATTCAACCGGATTTTCAAAGTTATGGAGATTTAAAGACTTTCTTCACCGGAGTAACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727855" ref_strand="+" ref_description="SGN-E727855 [LA15DH02]">
      <seq>caaaaatatattatattcagatttctacagtaaaatcaagttttgggttttggttttttgaagaaaatggattctgaaacgttaacagattcgtataatgaagaaatgatgggaacattaaccggagattttacagagcagttgagtatgaaagaacagataatcgaagaagattatgaggatgacgaggaagaggaggttgaagatgaagaagaagagttctctttcgcgtgtgggatagacgcgccgccgatagccgcggatgaggtgttttacaatggtcaaattcgacctctgtttccattgtttaatcagagtcttcttttatctgacgaagaattggaagctttgaaggaacaattaccgatcaggccaccggtgaagaagatatttatacaaacggaagacaacccaattccggcgagttcaaattcgttaacggagagtgaagaaatcgtcggacccttttgtgaatggtcaaaaaataaagcaattgaagcaacatcggacaatcctgaggtttgtaaaaagagtaattcaaccggattttcaaagttatggagatttaaagactttcttcaccggagtaacagtgacggaagagatacctttgtattcttaaacccaacaactccggcagcgaaagtagaggaaaaaattgttcggacagatgaaacgacaacgtcggagaagaaaaagaaggagatctccggcgaagtgaaagtcatcggaaaagtaacgaagaagatgaagaacgttgtgaagaagagtgaaggggttttagctcatgaagcttatatgaagagtaaagctgaaactgaagatcgccggcgatcgtatcttccttatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="47814" stop="49264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48114" g_stop="48964" g_length="851"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="851" r_length="851" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E727855" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48114" e_stop="48964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATATATTATATTCAGATTTCTACAGTAAAATCAAATTTTGGGTTTTGGTTTTTTGAAGAAAATGGATTCTGAAACGTTAACAGATTCGTATAATGAAGAAATGATGGGAACATTAACCGGAGATTTTACAGAGCAGTTGAGTATGAAAGAACAGATAATCGAAGAAGATTATGAGGATGACGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGAGTTCTCTTTCGCGTGTGGGATAGACGCGCCGCCGATAGCCGCGGATGAGGTGTTTTACAATGGTCAAATTCGACCTCTGTTTCCATTGTTTAATCAGAGTCTTCTTTTATCTGACGAAGAATTGGAAGCTTTGAAGGAACAATTACCGATCAGGCCACCGGTGAAGAAGATATTTATACAAACGGAAGACAACCCAATTCCGGCGAGTTCAAATTCGTTAACGGAGAGTGAAGAAATCGTCGGACCCTTTTGTGAATGGTCAAAAAATAAAGCAATTGAAGCAACATCGGACAATCCTGAGGTTTGTAAAAAGAGTAATTCAACCGGATTTTCAAAGTTATGGAGATTTAAAGACTTTCTTCACCGGAGTAACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCG</genome_strand>
        <mrna_strand>CAAAAATATATTATATTCAGATTTCTACAGTAAAATCAAGTTTTGGGTTTTGGTTTTTTGAAGAAAATGGATTCTGAAACGTTAACAGATTCGTATAATGAAGAAATGATGGGAACATTAACCGGAGATTTTACAGAGCAGTTGAGTATGAAAGAACAGATAATCGAAGAAGATTATGAGGATGACGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGAGTTCTCTTTCGCGTGTGGGATAGACGCGCCGCCGATAGCCGCGGATGAGGTGTTTTACAATGGTCAAATTCGACCTCTGTTTCCATTGTTTAATCAGAGTCTTCTTTTATCTGACGAAGAATTGGAAGCTTTGAAGGAACAATTACCGATCAGGCCACCGGTGAAGAAGATATTTATACAAACGGAAGACAACCCAATTCCGGCGAGTTCAAATTCGTTAACGGAGAGTGAAGAAATCGTCGGACCCTTTTGTGAATGGTCAAAAAATAAAGCAATTGAAGCAACATCGGACAATCCTGAGGTTTGTAAAAAGAGTAATTCAACCGGATTTTCAAAGTTATGGAGATTTAAAGACTTTCTTCACCGGAGTAACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAACGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTGAAACTGAAGATCGCCGGCGATCGTATCTTCCTTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392656" ref_strand="+" ref_description="SGN-E392656 [TUS-36-F11](-)">
      <seq>cccgggtaacagggcgggaagagataccttgttattttaaacccaacaattccggcagcgaaagtagaggaaaaaattgttcggacagatgaaacgacaacgtcggagaagaaaaagaaggagatttccggcgaagtgaaagtcatcggaaaagtaacgaagaagatgaagaaggttgtgaagaagagtgaaggggttttagctcatgaagcttatatgaagagtaaagctaaagctgaagatcgccggcgatcgtatcttccttatcggccggagctcgtcggatttttcacaaatgtgaacggtggattaacgaagaatgtgcacccattttaagtcaatttttttaaatttaattaattttaatattatagtaatgtaatttgcttagtcaataattagatttgcttgatttagatcatggcctaagggattatgaggtataagttggccttttttccccttgtatgatatgtaaaatctttaattcatcatataattatgtacttagagaatccgatctttagaaaactttttctatttttacgagaaaataataatattgtatatttatattttttttaatttttattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="48395" stop="49600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48695" g_stop="49289" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="623"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E392656" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48695" e_stop="49289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGTAACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTATGTACTTAGAGAATCCGATCTTTAGAAAACTTTTTCTATTTTTACGAGAAAATAATAATATTGTATATTTATATTTTTTTTAATTTTTATTA</genome_strand>
        <mrna_strand>CCCGGGTAACAGGGCGGGAAGAGATACCTTGTTATT-TTAAACCCAACAATTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATTTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTTTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTATGTACTTAGAGAATCCGATCTTTAGAAAACTTTTTCTATTTTTACGAGAAAATAATAATATTGTATATTTATATTTTTTTTAATTTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368648" ref_strand="+" ref_description="SGN-E368648 [TUS-22-H4](-)">
      <seq>taacagtgacggaaaagatacctttgtattcttaaacccaacaactccggcagcgaaagtagaggaaaaaattgttcggacagatgaaacgacaacgtcggagaagaaaaagaaggagatctccggcgaagtgaaagtcatcggaaaagtaacgaaaaaaatgaagaaggttgtgaaaaaaagtgaaggggttttagctcatgaagcttatatgaagagtaaagctaaagctgaagatcgccggcgatcgtatcttccttatcggccggagctcgtcggatttttcacaaatgtgaacggtggattaacgaagaatgtgcacccattttaagtcaatttttttaaatttaattaattttaatattatagtaatgtaatttgcttagtcaataattagatttgcttgatttagatcatggcctaagggattatgaggtataagttggccttttttccccttgtatgatatgtaaaatctttaattcatcatataattatgtacttaaagaatccgatctttagaaaactttttctatttttacgagaaaataataatattgtatatttatattttttttaatttttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="48401" stop="49600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48701" g_stop="49289" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="617"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E368648" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48701" e_stop="49289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTATGTACTTAGAGAATCCGATCTTTAGAAAACTTTTTCTATTTTTACGAGAAAATAATAATATTGTATATTTATATTTTTTTTAATTTTTATTA</genome_strand>
        <mrna_strand>TAACAGTGACGGAAAAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAAAAAATGAAGAAGGTTGTGAAAAAAAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTTTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTATGTACTTAAAGAATCCGATCTTTAGAAAACTTTTTCTATTTTTACGAGAAAATAATAATATTGTATATTTATATTTTTTTTAATTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392657" ref_strand="+" ref_description="SGN-E392657 [TUS-36-F11]">
      <seq>taacagtgacggaagagatacctttgtattcttaaacccaacaactccggcagcgaaagtagaggaaaaaattgttcggacagatgaaacgacaacgtcggagaagaaaaagaaggagatctccggcgaagtgaaagtcatcggaaaagtaacgaagaagatgaagaaggttgtgaagaagagtgaaggggttttagctcatgaagcttatatgaagagtaaagctaaagctgaagatcgccggcgatcgtatcttccttatcggccggagctcgtcggatttttcacaaatgtgaacggtggattaacgaagaatgtgcacccattctaagtcaatttttttaaatttaattaattttaatattatagtaatgtaatttgcttagtcaataattagatttgcttgatttagatcatggcctaagggattatgaggtataagttggccttttttccccttgtatgatatgtaaaatctttaattcatcatataattatgtacttagagaatccgatctttagaaaactttttctatttttacaagaaaataataatattgtatatttatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="48401" stop="49575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48701" g_stop="49275" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E392657" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48701" e_stop="49275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTATGTACTTAGAGAATCCGATCTTTAGAAAACTTTTTCTATTTTTACGAGAAAATAATAATATTGTATATTTATATTTTT</genome_strand>
        <mrna_strand>TAACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTATGTACTTAGAGAATCCGATCTTTAGAAAACTTTTTCTATTTTTACAAGAAAATAATAATATTGTATATTTATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368649" ref_strand="+" ref_description="SGN-E368649 [TUS-22-H4]">
      <seq>aacagtgacggaagagatacctttgtattcttaaacccaacaactccggcagcgaaagtagaggaaaaaattgttcggacagatgaaacgacaacgtcggagaagaaaaagaaggagatctccggcgaagtgaaagtcatcggaaaagtaacgaagaagatgaagaaggttgtgaagaagagtgaaggggttttagctcatgaagcttatatgaagagtaaagctaaagctgaagatcgccggcgatcgtatcttccttatcggccggagctcgtcggatttttcacaaatgtgaacggtggattaacgaagaatgtgcacccattctaagtcaatttttttaaatttaattaattttaatattatagtaatgtaatttgcttagtcaataattagatttgcttgatttagatcatggcctaagggattatgaggtataagttggccttttttccccttgtatgatatgtaaaatctttaattcatcatataattatgtacttagagaatccgatctttagaaaactttttctatttttacgagaaaataataatattgtatatttatattttttttaatttttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="48402" stop="49600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48702" g_stop="49289" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="589" polyA_stop="618"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E368649" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48702" e_stop="49289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTATGTACTTAGAGAATCCGATCTTTAGAAAACTTTTTCTATTTTTACGAGAAAATAATAATATTGTATATTTATATTTTTTTTAATTTTTATTA</genome_strand>
        <mrna_strand>AACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTATGTACTTAGAGAATCCGATCTTTAGAAAACTTTTTCTATTTTTACGAGAAAATAATAATATTGTATATTTATATTTTTTTTAATTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237686" ref_strand="+" ref_description="SGN-E237686 [cLED-19-B15]">
      <seq>aacagtgacggaagagatacctttgtattcttaaacccaacaactccggcagcgaaagtagaggaaaaaattgttcggacagatgaaacgacaacgtcggagaagaaaaagaaggagatctccggcgaagtgaaagtcatcggaaaagtaacgaagaagatgaagaaggttgtgaagaagagtgaaggggttttagctcatgaagcttatatgaagagtaaagctaaagctgaagatcgccggcgatcgtatcttccttatcggccggagctcgtcggatttttcacaaatgtgaacggtggattaacgaagaatgtgcacccattctaagtcaatttttttaaatttaattaattttaatattatagtaatgtaatttgcttagtcaataattagatttgcttgatttagatcatggcctaagggattatgaggtataagttggccttttttccccttgtatgatatgtaaaatctttaattcatcatataattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="48402" stop="49498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48702" g_stop="49198" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E237686" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48702" e_stop="49198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTAT</genome_strand>
        <mrna_strand>AACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228178" ref_strand="+" ref_description="SGN-E228178 [cLED-2-I17]">
      <seq>aacagtgacggaagagatacctttgtattcttaaacccaacaactccggcagcgaaagtagaggaaaaaattgttcggacagatgaaacgacaacgtcggagaagaaaaagaaggagatctccggcgaagtgaaagtcatcggaaaagtaacgaagaagatgaagaaggttgtgaagaagagtgaaggggttttagctcatgaagcttatatgaagagtaaagctaaagctgaagatcgccggcgatcgtatcttccttatcggccggagctcgtcggatttttcacaaatgtgaacggtggattaacgaagaatgtgcacccattctaagtcaatttttttaaatttaattaattttaatattatagtaatgtaatttgcttagtcaataattagatttgcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="48402" stop="49408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48702" g_stop="49108" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E228178" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48702" e_stop="49108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGAT</genome_strand>
        <mrna_strand>AACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378638" ref_strand="+" ref_description="SGN-E378638 [TUS-46-A2]">
      <seq>aaatacctttgtattcttaaacccaacaactccggcagcgaaagtagaggaaaaaattgttcggacagatgaaacgacaacgtcggagaagaaaaagaaggagatctccggcgaagtgaaagtcatcggaaaagtaacgaagaagatgaagaaggttgtgaagaagagtgaaggggttttagctcatgaagcttatatgaagagtaaagctaaagctgaagatcgccggcgatcgtatcttccttatcggccggagctcgtcggatttttcacaaatgtgaacggtggattaacgaagaatgtgcacccattctaagtcaatttttttaaatttaattaattttaatattatagtaatgtaatttgcttagtcaataattagatttgcttgatttagatcatggcctaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="48416" stop="49427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48716" g_stop="49127" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E378638" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48716" e_stop="49127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGG</genome_strand>
        <mrna_strand>AAATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230526" ref_strand="+" ref_description="SGN-E230526 [cLEL-35-C21](-)">
      <seq>gtgaaagtcatcggaaaagtaacgaagaagatgaagaaggttgtgaaaaagagtgaaggggttttagctcatgaagcttatatgaagagtaaagctaaagctgaagatcgccggcgatcgtatcttccttatcggccggagctcgtcggatttttcacaaatgtgaacggtggattaacgaagaatgtgcacccattctaagtcaatttttttaaatttaattaattttaatattatagtaatgtaatttgcttagtcaataattagatttgcttgatttagatcatggcctaagggattatgaggtataagttggccttttttccccttgtatgatatgtaaaatctttaattcatcatataattatgtacttagagaatccgatctttagaaaactttttctatttttacgagaaaataataatattgtatatttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="48531" stop="49570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48831" g_stop="49269" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="456"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E230526" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48831" e_stop="49269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTATGTACTTAGAGAATCCGATCTTTAGAAAACTTTTTCTATTTTTACGAGAAAATAATAATATTGTATATTTAT</genome_strand>
        <mrna_strand>GTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAAAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTATGTACTTAGAGAATCCGATCTTTAGAAAACTTTTTCTATTTTTACGAGAAAATAATAATATTGTATATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230739" ref_strand="+" ref_description="SGN-E230739 [cLEL-35-C21](-)">
      <seq>agctcatgaagcttatatgaagagtaaagctaaagctgaagatcgccggcgatcgtatcttccttatcggccggagctcgtcggatttttcacaaatgtgaacggtggattaacgaagaatgtgcacccattctaagtcaatttttttaaatttaattaattttaatattatagtaatgtaatttgcttagtcaataattagatttgcttgatttagatcatggcctaagggattatgaggtataagttggccttttttccccttgtatgatatgtaaaatctttaattcatcatataattatgtacttagagaatccgatctttagaaaactttttctatttttacgagaaaataataatattgtatatttataaaccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="48596" stop="49570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48896" g_stop="49269" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="391"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E230739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48896" e_stop="49269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTATGTACTTAGAGAATCCGATCTTTAGAAAACTTTTTCTATTTTTACGAGAAAATAATAATATTGTATATTTAT</genome_strand>
        <mrna_strand>AGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTATGTACTTAGAGAATCCGATCTTTAGAAAACTTTTTCTATTTTTACGAGAAAATAATAATATTGTATATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350760" ref_strand="+" ref_description="SGN-E350760 [cTOS-7-N5]">
      <seq>tcaaataacatcggacagattgcatacttgaatgctcttcgttttgggctcaagcggatctttttgggaggattcttcatccgcgaccatgcttatacaatggacacaatctccgttgcagttgatttctggtcgaagggtgaggccaaagcaatgttcttgcggcatgagggatttcttggagccctaggagctttcatgaactacaaagatggaagtacagattccatgccccctcagttagttgagcaacaagccgccaagaggagttcaagttgcatagtcgataggattcataactctacgcatgtgcaggaaaatgaaaatggcgccacagactgtagattgcgagttagtagctcatttaaaatttatgatgaggtcaaaaggtgttgacctatgaaacaactagcatatgtacaaaaattaacgaggatgtcaaaagaatctgttgtttctattcctagttaagtaagcaacaaaatttcagatttatatgtatatgtatttgtcctgcaatagatttgtagaaccttgacatgtgatgaagtgagaaatgttattaacactagttcagcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="55963" stop="53609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55663" g_stop="55646" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55645" i_stop="54905" i_length="741">
            <donor d_prob="0.832" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54904" g_stop="54792" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="131" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54791" i_stop="54357" i_length="435">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54356" g_stop="53902" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="586" r_length="455" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E350760" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55663" e_stop="55646"/>
          <exon e_start="54904" e_stop="54792"/>
          <exon e_start="54356" e_stop="53902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATAACATCGGACAGGTAATTATGCGGGTCAAGATGTTTCTCTCAGCAGTATCTGTAGCCTTTCCTAACTGAGAATATTTCATTTCTCTCCATATGATGAATAATACTGTTCCGATTAGATTTGTTTTGCATACTACTCTCCTCTCACAAGGATACAAAGAGGGATTGAAAGAAAACTCAGGAGAAGAGCAGATAGATAATCCACCGGATACTAATTGGATACCTCGTATTGCACGTTTTCATTTCATGCTGACAGTAACTCTGTATATTCTTGGACATTTGATTGTAACATGGGATATTGTTGTTAAAATGACATCATATGTTGGAAGATACTAAAACCTAATACAACTTCTGCATTAGTCTTTAGTCTTTTCATTGCTAGAAACTGTCCGGTGGTGTTATAGACATGAATCTGCTACTTTGGTTCCTGAATGAATTTACATTTCCTATTTGAAACATTTCATTATAGTAGTCTTCATTAAATGAATTGATTTTTATATAAGTGGCACCAAGTTGGTCTATGGTTTAGTATGTTAGATATTCTGTTCCGAAGTGATGCTTTGACTGAACAAGAATGGCAAACATGAACACCTGAATAACTTGAGAAGTATGACTTTGCAACCAGCGCTCACGAAATGGAAGAAATATAGGGCCTCTCCTTCCATTCTTTTGCTATAATTTATTTGTTAAAATTGTTAAGAAGTCATTTTCTTATTGTTGCTGACTTTTTTTCTTCTATTGGTTTTGCTTTGTTAGATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTGGTAATTGCTATATCCACTTATTGTCAGATAATTGGTATTTTCCTTATTACCAAGTTACTTACAATCATAGCTCCCATAATTTTTCTTCTGAATATAAGCCTTGGTTAGTAGAGCTACCCGGCACCCATGCTAGTGGGAAGTAGTGAGGTATGCACAAGCTGGTCTGGACACCATCCTTACAAAAGGAGATCTTTTGAATAACATTAGTTTCTTTAGTGATGAATTAGTGTGAAATTCGTACGATATATTAATCGATTGGCACACTCTTTTAACGCAAGGGATAAATAGTTCTCACTAGCTATGAGTACTATTCTAAAAAAAGAAAGAGCACTCACCTCACTAGCTAGTTCTGAAACATGGTTTCACAATTTATCACTGTTGACTCCTCTAGGTAATTTCTCCTGAATTCAAGTTAACAGAATGCACTACGTGCAGGTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAGGTCAAAAGGTGTTGACCTATGAAACAACTAGCATATGTACAAAAATTAACGAGGATGTCAAAAGAATCTGTTGTTTCTATTCCTAGTTAAGTAAGCAACAAAATTTCAGATTTATATGTATATGTATTTGTCCTGCAATAGATTTGTAGAACCTTGACATGTGATGAAGTGAGAAATGTTATTAACACTAGTTCAGCACCTCTTG</genome_strand>
        <mrna_strand>TCAAATAACATCGGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAGGTCAAAAGGTGTTGACCTATGAAACAACTAGCATATGTACAAAAATTAACGAGGATGTCAAAAGAATCTGTTGTTTCTATTCCTAGTTAAGTAAGCAACAAAATTTCAGATTTATATGTATATGTATTTGTCCTGCAATAGATTTGTAGAACCTTGACATGTGATGAAGTGAGAAATGTTATTAACACTAGTTCAGCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272971" ref_strand="-" ref_description="SGN-E272971 [cLEM-25-M21]">
      <seq>agctttcatgaactacaaagatggaagtacagattccatgccccctcagttagttgagcaacaagccgccaagaggagttcaagttgcatagtcgataggattcataactctacgcatgtgcaggaaaatgaaaatggcgccacagactgtagattgcgagttagtagctcatttaaaatttatgatgaggtcaaaaggtgttgacctatgaaacaactagcatatgtacaaaaattaacgaggatgtcaaaagaatctgttgtttctattcctagttaagtaagcaacaaaatttcagatttatatgtatatgtatttgtcctgcaatagatttgtagaaccttgacatgtgatgaagtgagaaatgttattaacactagttcagcaaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="54596" stop="53609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54296" g_stop="53912" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="410"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E272971" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272971" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54296" e_stop="53912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAGGTCAAAAGGTGTTGACCTATGAAACAACTAGCATATGTACAAAAATTAACGAGGATGTCAAAAGAATCTGTTGTTTCTATTCCTAGTTAAGTAAGCAACAAAATTTCAGATTTATATGTATATGTATTTGTCCTGCAATAGATTTGTAGAACCTTGACATGTGATGAAGTGAGAAATGTTATTAACACTAGTTCA</genome_strand>
        <mrna_strand>AGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAGGTCAAAAGGTGTTGACCTATGAAACAACTAGCATATGTACAAAAATTAACGAGGATGTCAAAAGAATCTGTTGTTTCTATTCCTAGTTAAGTAAGCAACAAAATTTCAGATTTATATGTATATGTATTTGTCCTGCAATAGATTTGTAGAACCTTGACATGTGATGAAGTGAGAAATGTTATTAACACTAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227544" ref_strand="+" ref_description="SGN-E227544 [cLEL-30-G6](-)">
      <seq>gctttcatgacctacaaagatggaagtacagattccatgccccctcagttagttgagcaacaagccgccaagaggagttcaagttgcatagtcgataggattcataactctacgcatgtgcaggaaaatgaaaatggcgccacagactgtagattgcgagttagtagctcatttaaaatttatgatgaggtcaaaaggtgttgacctatgaaacaactagcatatgtacaaaaattaacgaggatgtcaaaagaatctgttgtttctattcctagttaagtaagcaacaaaatttcagatttatatgtatatgtatttgtcctgcaatagatttgtagaaccttgacatgtgatcaagtgagaaatgttattaacactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="54595" stop="53617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54295" g_stop="53917" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="395"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E227544" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54295" e_stop="53917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAGGTCAAAAGGTGTTGACCTATGAAACAACTAGCATATGTACAAAAATTAACGAGGATGTCAAAAGAATCTGTTGTTTCTATTCCTAGTTAAGTAAGCAACAAAATTTCAGATTTATATGTATATGTATTTGTCCTGCAATAGATTTGTAGAACCTTGACATGTGATGAAGTGAGAAATGTTATTAACACTA</genome_strand>
        <mrna_strand>GCTTTCATGACCTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAGGTCAAAAGGTGTTGACCTATGAAACAACTAGCATATGTACAAAAATTAACGAGGATGTCAAAAGAATCTGTTGTTTCTATTCCTAGTTAAGTAAGCAACAAAATTTCAGATTTATATGTATATGTATTTGTCCTGCAATAGATTTGTAGAACCTTGACATGTGATCAAGTGAGAAATGTTATTAACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747674" ref_strand="+" ref_description="SGN-E747674 [GI|62751100]">
      <seq>cccatggggatccgatgagtagctcttttttgaacaaaattctatatattcttcgccgatcgtgattttgtttattcatgacagttagaaaattctatttttccacttaattgagtgttcaatttgaagaagaagtggaggaggatccgatatggaggtgaagggaattgatgggaaattagaaaagagtgattccacttctgctgatgaaatttcacatttgtctatcgacattggaggctccctcatcaagattgtatacttttcaaccaacagtaagtgcagcacaaatgatgaggcaccaacgttatcaaaagaaagacaggaagttcccaatggagaccttaaccatcacattctcagtggcaggctttatttcattaaattcgagactagcaagattgaggactgcataaagtttttgtcttccaagaaacttcaaaaatgcggtgctcaatgtcatcattctcacgctgttgacaagatcaagattaaggcaacaggtggtggagctttcaagtttgccgatctattcaaagaaaaacttggcctaactctggacaaggtagaggaaatggagtctcttgttaccggagcaaattttctgcttaaggctgccaatcatgaagtttatacatatattggaggtcaaaaggagtatgtgcagatagatcagaatgatttatatccctacctccttgtcaacattgggtctggggttagcatgataaaggtagatggagatgggaaatttcagagagttagtggaactagcgtcggtggtggcactttcttgggactagggaaacttttgactaaatgccaaagttttgatgagttgctggaactgagccatctgggaaataacagagtgatagacatgctcgttggagatatttacgggggattggactattcaaagattggccttgcatcaacagccatagcgtctagcttcggtaaggcgatctcagaaaacaaagagctcgaagactacaaaccagaagacattgcccggtccctcttaaggatgatctcaaataacatcggacagattgcatacttgaatgctcttcgttttgggctcaagcggatctttttgggaggattcttcatccgcgaccatgcttatacaatggacacaatctccgttgcagttgatttctggtcgaagggtgaggccaaagcaatgttcttgcggcatgagggatttcttggagccctaggagctttcatgaactacaaagatggaagtacagattccatgccccctcagttagttgagcaacaagccgccaagaggagttcaagttgcatagtcgataggattcataactctacgcatgtgcaggaaaatgaaaatggcgccacagactgtagattgcgagttagtagctcatttaaaatttatgatgaggtcaaaaggtgttgacctatgaaacaactagcatatgtacaaaaattaacgaggatgtcaaaagaatctgttgtttctattcctagttaagtaagcaacaaaatttcagatttatatgtatatgtatttgtcctgcaatagatttgtagaaccttgacatgtgatgaagtgagaaatgttattaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62956" stop="53618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62675" g_stop="62433" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62432" i_stop="61039" i_length="1394">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61038" g_stop="60829" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="449" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60828" i_stop="59762" i_length="1067">
            <donor d_prob="0.548" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59761" g_stop="59715" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="496" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59714" i_stop="58751" i_length="964">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58750" g_stop="58634" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="613" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58633" i_stop="57937" i_length="697">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.705" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57936" g_stop="57817" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="733" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57816" i_stop="57253" i_length="564">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57252" g_stop="57158" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="828" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="57157" i_stop="57067" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57066" g_stop="56973" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="922" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="56972" i_stop="55778" i_length="1195">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55777" g_stop="55646" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="923" r_stop="1054" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="55645" i_stop="54905" i_length="741">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54904" g_stop="54792" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1055" r_stop="1167" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="54791" i_stop="54357" i_length="435">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="54356" g_stop="53918" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1168" r_stop="1606" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E747674" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1610</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62675" e_stop="62433"/>
          <exon e_start="61038" e_stop="60829"/>
          <exon e_start="59761" e_stop="59715"/>
          <exon e_start="58750" e_stop="58634"/>
          <exon e_start="57936" e_stop="57817"/>
          <exon e_start="57252" e_stop="57158"/>
          <exon e_start="57066" e_stop="56973"/>
          <exon e_start="55777" e_stop="55646"/>
          <exon e_start="54904" e_stop="54792"/>
          <exon e_start="54356" e_stop="53918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATGACTAATGAAGTACTCAGTAGCTCTTTTTTGAACAAAATTCTATATATTCTTCGCCGATCGTGATTTTGTTTATTCATGACAGTTAGAAAATTCTATTTTTCCACTTAATTGAGTGTTCAATTTGAAGAAGAAGTGGAGGAGGATCCGATATGGAGGTGAAGGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATCGACATTGGAGGTAATTTTTTGTTCGAATCGTACATTTCTGGGGTTTTTTTTTTGTTGGTGTGTGAGATCTTGAGATTCTTATTTGTTAAAGTGAAACGTGCATTTTTAATTTTAATGTGATTTTGGAGAGTTGTTTGTTTTCTGTTTCTTATTAGTTTGACGATAGAGTTTAAGGAAAAAGAAAAAGAAAAGATCTTTTTTTTTGTATTGAGACTCATAATTCAGTTATGTTAACTGAGGAACTAAGAAAGAGAAATTTAGAAACTTCTGGAATTGCTATGTGCTTGATGGTTTATACTGGACTACATGTTTCAATATGTGTTGCTCCAACTCTTCAAAAATATTATTGGGTTAGTGTTGGATGGAGTAGTGCATTTTTGGAGTATACGACACGGGTGTGGATTTTCTTTTTTGGAGAGTCTGAGCAATATAGGTTTCAATGAGGGTTAAAGGGGGATGAATGAGATGGCGGAGTAATTGATTCATAGAAATGAAAATGTGGAAAAAATGATATTCATATATGGCTGTATTGCACTAGTTCACTAGTTCTACTTAATTGAGTGATGATCCAACTTCCTTTTTTCATTTCGCAATCCTATGTAGTGATATATCATTGTATCATGTTTTTTTCTCTGAGCTCGAAAGGTTGAAGTTGTTCATTTTAATCTTAAATAAGAGGGAGTCTTGAGCGAAGAGGCGGACATTTGAATGGCAAAACATGGGCATATCCAACAGGAAGTGGTAAACGTGGTTGGACAAGTGTAAAAGAAGACTGGATTAAAACCATTTATATGAGATTGTCGACAATCGGAACGTATCAATCTTGAAGAAATGATTCCCTAGTTTGGAATAACAATTGTTGGAATTGACTGGTCAAAATTAACAAAAAGACTCTTGTTGGAATTGGTAGTTGTTCAAAGTCTAATCTAGCTGAAACCACTCTTTGAAAACACAGAAATATCATCAACTGAGAGTGATCTCCAGAAGTCAACCAGTTTCTTCTGTGCTACTTAACTTAAGCATTTTTGTAGATTATCAACTTTTAGATAGATGGTTTATGACCTCAAGATACATCTGAATGCGTCTTAGTGAAAATTCTTGTTTTTCTTTGCAACAGAACTTCTGTCTTAGTTTAAAATTGTCATTTCCTGCCCTACTTTGGAATTTGGAAGTCCTTCCGTTCCATAAAGGGATATAGAATCTCACTAATTTTTTCATAAGTGGAACAGAAATTAACTGTTTTACAATATATTGATAAGCATCTCCTATGTACACAGTCAGATATTAAAGAAGCTTTATGCAACTTGGCTAGCTTTAAAGATCCTCCTACTAACTACCTATTAAAGAATATTTTGAGGACCAAAATAGGAAAAATGCTAAATGAAAGGAACTTTTCTTTTGCAGGCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTCAGTGGCAGGCTTTATTTCATTAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAAAAATGCGGTAGGTATTCTTTGTGGTGCTTACACCTTAGATGTAATTGTTTTTCCTATGCTGACTTAATTGGTTATGAACTGGCAGCTAGGTAAACATTTAGGGAGCTTGATTATGAACATGAACTTAATATATTTTGATAAGTGAAGAAGAATTTATTGTTTCACCTTTGATTATACGCAAATCTAACTCATTGGAGCTGTCAGCATCATTTGGAATATGTACATGTGTGGCTGAGCTTGATCCTGATTGTCACTCTTTCTTTTGTTTTTAAAAAAGAAACGGATTTCCTTTTTTATTTAGTTCACCCAGATTTTGTAATGCAGCTCATAATTCACAGTATACACATGAACAAAATTTTCAATTTTAGCCACGGAGTTTTAAATTTTTTATCTTATGTCTGCTCATTTGTGTTTCTTTCTGTCCGGTTATTCATCTTTACAAAGTGAAGTAATAGAGGCACAGGGAAAGGATTCTTTTCCTAGTATAGCTCTTCTCCAGGTGTAGTAGAGTTAAGAGAATGAGAACAAAGATGGCCTCTCAATGGTCAAAAAGCTAGAATAGAGAGGACATGAAATAAACTCTTGCTCGTAAGTAGCAGTGAGAGAATTCAGGAGTTGCAGGAAATTGGAAAGAAAAAGAAAACAGATCAGCTGGATCTACACTTGAGCGGTTGCTTTAACACTAGCATAGACTTTAAGATGTTAATTTACTTAAATATTTTATTAGTGATAGTGGAAGAACAATATTAAATTATCACTAAGTTAACGTGGCACAAGAAACATCTGTACAAACTTTAAAGTGTGGATGATTGAAAGAATTTGAATTCTTGCAAGTGAAGTGTACAGAATAGCACCTTTTTCATTACCTTGGCGTATTTAAAGTGTACAAACAGTCTAGTACGGACAGAAATATGGTTTATATGTAGTTTCAGTTAAGCTTTTAGGTACTCTGGTCACCGTAGGAATCATATGCTCAGTTTAATTAAAGTTTATACTCACAGTTTGTTGTACTTCTTTTGAATAAGTTGTATTATATCATGACCTTCCTAAATCTTACATATTACAATGTTACAGGTGCTCAATGTCATCATTCTCACGCTGTTGACAAGATCAAGATTAAGGTAAAGGAGTTATTTCAAAAGATGTTGGTTCTGTTTCCCACCTCTTTTTCTTTTTCTTTGCTCAATTAGGTGATTATAGGAGGTTTTCCTCAAGACATAGTTTTTTGAGGAATTTATATCCTAAAAAACTTCATCAGAAAGAAACAATATTTGTATCCATTGCGGGATGAAACAAGCTCCTAGAAGTCCAGCAGATCAATTCTGGTTTGCTGGAGAAGCTACTCAATGATAAGTACTGAGGAAGCTACACACTGCAGTCTTCTTGTTGTTTGTACTTTCAAAGTTTAATACTTCTTGAAAATTAAGTTTTTATAAAGTGGAATAAGTAGTGTATGCATTTCTCCTTCTAGAATAAATAAATGCATAACAAAATAAATAAATAAGTGCTCTCTCTTATAATTTAAACTGTAAGATAAGGTGCTTTAGGTCAATTGATATGGTAGTAAGTAGAGTTCTTCAATTTGAGTCTCACGCAGATTAACAAAATAATGCGCATGCTTTGCTAACCCAAAAGAAGAAGGAAGAGGCTACATGGGGACGTGGTAATGACCTGAAATAAATAAATAAAATGTACTCTGTAGTTCAACTTTTAATTGGAATGTCCACAATTCAATGAATTGTAATTAGACTAATGTGCCGGAGTTAATAGTGTATGCATTAGTGTGTGATCGGTAAAACGTTCTAAATACACTAGAGACAGTATTCATAAAAGATTTCAAGCTTAGAGCTAAAGCATTGCACAGAAACCTTTGCATGTAGTACAATTTTCTGAAAACACATTATCAGGTCTTGTAGATGTCCTCTGCCAATGGCTGGAGTATATCTTTTTGGGGGTCAAAGCACCCATGGTCACCGAAGAGCTGTAGTAGAATTTTTCCTCATAATATTTGTAACTAATTTATATGGTGAAATGCTAAATTTATATGACCCATGGAACCTTTTGATGAGTTTTATGCTTGAACAGGCAACAGGTGGTGGAGCTTTCAAGTTTGCCGATCTATTCAAAGAAAAACTTGGCCTAACTCTGGACAAGGTAGAGGAAATGGAGTCTCTTGTTACCGGAGCAAATTTTCTGCTTAAGGTGGGTTTTCTTTTATAGCAGAAAGCAGTATTTGGTTTGTACTATTTTCTTCAGATATTGAAGTCCAGGCACATGAAATCCTTTTAAAATAATTTATATTTCTTTTGTCCGCCAATCTTCAGCTTGGTTTGCTTAAACTGAATAAGTACCTGGAAGGTATTTGTGGTCTCAGGAATACATATGTGTTTTCTCTAAATTAGATTCTTGCTTAGGGAAATGATTGTGTGTGTATAGCCTAATTTACTGGGTTTATTGTTTTATTAATTTATCATGATTATGTGTTACTTTCTTGATTGAATGCTGCACCCTCAAGATCGGTAAAAGATTGATAAAGGCACATTTCCCATGGAAGTGGTTTCTCTTTTCTCTCCTCCGTCCAGTATTTAGCTGAATTGAGTAGAAGTAACATATGGAGTAATTTTCCCTTTCTTGGTATGGTACATTTCGATAATTTCTGGTAAATGAAGTACTCTTTTTAAGGCCAGAAAATCTGTTAATTTTTTTACTCTTTTCCACGAGACCAAGAAGTCTCCAGGATTCAAGCCTAACTAGTGAGGCTAAGACCACATTGGCAACAGAAACCCTTCTCAACTGGATAAATTTCGTGCTCTTTTCTAATTTCAGTACAAAATATTTTATTTTATTTTTAAAAGAAAGAGGTTTGTTTGACCCCATTCCTCTCTTTTTCTCTGAGCAGGCTGCCAATCATGAAGTTTATACATATATTGGAGGTCAAAAGGAGTATGTGCAGATAGATCAGAATGATTTATATCCCTACCTCCTTGTCAACATTGGGTCTGGGGTTAGCATGATAAAGGTAAGCTTCACAGCCTAGATTCCTTCAATTCGATGTGAACACTTGTTCACACTGATCTTCAAGGGTTAGGACCTGCAAGGAGTTGACCAAAGCTCTCCTTATCCTATTTCACGCATGATTTAGATGAAATTCCATAAGCTTCATACTGTTGTGCTATTTTCTAACATACAGCTTTCTTCTCACTGTTTTCAACGTGTGGGTGCATTCTTATTGCTTATATTATCTCGTGCAGGACAAGCAGTTAATCTTCTGCATAGTGTTAGCATCCAATCTATAAATTCAAAAAGTTAATACCTACAACCACTATGTTATTTTTCATGTGTTAATGAGGAAAATATTTCCTTTGAATTATATTTCTGATGATGTTTTCATTAACACATTTTTTTAGAACTAAAAACTCGATCAAAACTGTTCTAGTAATATAGGTCTTCGATTTGTTCATTTTTCGCTTCTTTAAATGCTGACACTGCTCACAAATAATTCTGCATACGCCACCGTGATTTTTAGTACTTCATAGCTGACTCGCTGTTTGTTATATCAATATTTTATTTTTATTCCTTTTAGGTAGATGGAGATGGGAAATTTCAGAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGACTAGGGAAACTTTTGACTAAATGCCAAAGGTTACTTTCATTTCAATTATAAGTAACGATTTTCAATATCATTAATTGTTTTCTCTTTCTGCTGAATTTTCTTATGTGTTCGTTATTACAGTTTTGATGAGTTGCTGGAACTGAGCCATCTGGGAAATAACAGAGTGATAGACATGCTCGTTGGAGATATTTACGGGGGATTGGACTATTCAAAGGTATAAACTTTGATGTGTACTTTGTTTTTCTTTATGCTCTTTTACACCTTTTCTTTCTTTTGGATCTGTTGTAGTTTAAACTATCTCAGGTCCACTATGTCACATCTTGGATATAGAAAGTCTAAATGAATAATGGAAATGGTCTACAAAGTCCAAACTTTAGTCCAAGTTGAGCAATTTCTTTCCCAACTCCCAATTTGTGTCCCATCACATCCTCAATCCACTATGTTTTGGCTGTAAAGGTTCTCTTATCAAGATAGGTGAAAGTAAATTCATTTTTGATCATAAGCAAAAAGGGGATGACACTAGTAGAGTGAACTTTGCTTGTGCCTTTCATCACTTGGAATTGTGAATATTAAAGAAATGATAAGTTGAGTCAACCGCCCTCTTAAACCTTTTTTTCTCTTCTTTCTGCATCTCCCTTTTGTTCACATTCCTCCAATCTACTTTCTGTTTTTCTCCGGATGTGCTCTGCCAATGCAAGACCTTTATGCAGGAGAATTTTAAGGCTAGCTTGTTACAATTTACAAGTTCATGTCTTCTTGTGTTACCTTCTCTGAATCGATAAATTGCACCCCCCCTGAGTGGATTTGTTTGTCTTATTTTGTCTTGCTAATTCTCTAAACACTTACTGGGCCTCTTGTGTACAGAAATTCTCATTTCATCCCAAAAGTATGGATGGGGTCACAAACTTGTTTCCAATTGTCTAAATTTTCGCAATTCCTTGTCGACACCAGGACCCAGAAAGAAATGTTCCCAGTCATGATGTTCACTTTGAAAAGGTGCTGCAAACAATGCCAGACCGAAATTGGGACTAATTCTCTTCTATTGCTTGAGATATGCATCGCCCCTTTAGTTGGTGAGAATTTGGAGAAAAGTCATTAAAATTAGGGAAAAGGCTCTAAAATATTCCTCTACTATACAAAATGTCTTAATTTCATCCTCCCTCCATTATACTTAGAGGTTATCCATACCCCATTAGCAAATCCTTTTAGTTGTCAGTTGTTATAGATGAACTCATTAACTCCACCAAGCAGTTCCCTATTGTACCTATGTTTCTGCTGTTGGAAGTTGGCCGAGTAATTGAAATCTATCATAATAGGAGTTGATGAATTTTGCAAATCGAGTTCCCATATTTTCAGTTTTTCTAAATCTTCATATTCAGGGTGATTAAGAATTTAGTGATTTATGACAGATTGGCCTTGCATCAACAGCCATAGCGTCTAGCTTCGGTAAGGCGATCTCAGAAAACAAAGAGCTCGAAGACTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAGGTAATTATGCGGGTCAAGATGTTTCTCTCAGCAGTATCTGTAGCCTTTCCTAACTGAGAATATTTCATTTCTCTCCATATGATGAATAATACTGTTCCGATTAGATTTGTTTTGCATACTACTCTCCTCTCACAAGGATACAAAGAGGGATTGAAAGAAAACTCAGGAGAAGAGCAGATAGATAATCCACCGGATACTAATTGGATACCTCGTATTGCACGTTTTCATTTCATGCTGACAGTAACTCTGTATATTCTTGGACATTTGATTGTAACATGGGATATTGTTGTTAAAATGACATCATATGTTGGAAGATACTAAAACCTAATACAACTTCTGCATTAGTCTTTAGTCTTTTCATTGCTAGAAACTGTCCGGTGGTGTTATAGACATGAATCTGCTACTTTGGTTCCTGAATGAATTTACATTTCCTATTTGAAACATTTCATTATAGTAGTCTTCATTAAATGAATTGATTTTTATATAAGTGGCACCAAGTTGGTCTATGGTTTAGTATGTTAGATATTCTGTTCCGAAGTGATGCTTTGACTGAACAAGAATGGCAAACATGAACACCTGAATAACTTGAGAAGTATGACTTTGCAACCAGCGCTCACGAAATGGAAGAAATATAGGGCCTCTCCTTCCATTCTTTTGCTATAATTTATTTGTTAAAATTGTTAAGAAGTCATTTTCTTATTGTTGCTGACTTTTTTTCTTCTATTGGTTTTGCTTTGTTAGATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTGGTAATTGCTATATCCACTTATTGTCAGATAATTGGTATTTTCCTTATTACCAAGTTACTTACAATCATAGCTCCCATAATTTTTCTTCTGAATATAAGCCTTGGTTAGTAGAGCTACCCGGCACCCATGCTAGTGGGAAGTAGTGAGGTATGCACAAGCTGGTCTGGACACCATCCTTACAAAAGGAGATCTTTTGAATAACATTAGTTTCTTTAGTGATGAATTAGTGTGAAATTCGTACGATATATTAATCGATTGGCACACTCTTTTAACGCAAGGGATAAATAGTTCTCACTAGCTATGAGTACTATTCTAAAAAAAGAAAGAGCACTCACCTCACTAGCTAGTTCTGAAACATGGTTTCACAATTTATCACTGTTGACTCCTCTAGGTAATTTCTCCTGAATTCAAGTTAACAGAATGCACTACGTGCAGGTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAGGTCAAAAGGTGTTGACCTATGAAACAACTAGCATATGTACAAAAATTAACGAGGATGTCAAAAGAATCTGTTGTTTCTATTCCTAGTTAAGTAAGCAACAAAATTTCAGATTTATATGTATATGTATTTGTCCTGCAATAGATTTGTAGAACCTTGACATGTGATGAAGTGAGAAATGTTATTAACACT</genome_strand>
        <mrna_strand>CCCATGGGGA-T-CCG-A-TGAGTAGCTCTTTTTTGAACAAAATTCTATATATTCTTCGCCGATCGTGATTTTGTTTATTCATGACAGTTAGAAAATTCTATTTTTCCACTTAATTGAGTGTTCAATTTGAAGAAGAAGTGGAGGAGGATCCGATATGGAGGTGAAGGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATCGACATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTCAGTGGCAGGCTTTATTTCATTAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAAAAATGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCAATGTCATCATTCTCACGCTGTTGACAAGATCAAGATTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGGTGGTGGAGCTTTCAAGTTTGCCGATCTATTCAAAGAAAAACTTGGCCTAACTCTGGACAAGGTAGAGGAAATGGAGTCTCTTGTTACCGGAGCAAATTTTCTGCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAATCATGAAGTTTATACATATATTGGAGGTCAAAAGGAGTATGTGCAGATAGATCAGAATGATTTATATCCCTACCTCCTTGTCAACATTGGGTCTGGGGTTAGCATGATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGGAGATGGGAAATTTCAGAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGACTAGGGAAACTTTTGACTAAATGCCAAAG...........................................................................................TTTTGATGAGTTGCTGGAACTGAGCCATCTGGGAAATAACAGAGTGATAGACATGCTCGTTGGAGATATTTACGGGGGATTGGACTATTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCTTGCATCAACAGCCATAGCGTCTAGCTTCGGTAAGGCGATCTCAGAAAACAAAGAGCTCGAAGACTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAGGTCAAAAGGTGTTGACCTATGAAACAACTAGCATATGTACAAAAATTAACGAGGATGTCAAAAGAATCTGTTGTTTCTATTCCTAGTTAAGTAAGCAACAAAATTTCAGATTTATATGTATATGTATTTGTCCTGCAATAGATTTGTAGAACCTTGACATGTGATGAAGTGAGAAATGTTATTAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554569" ref_strand="-" ref_description="SGN-E554569 [cTSC-4-L2]">
      <seq>gattggccttgcatcaacagccatagcgtctagcttcggtaaggcgatctcagaaaaccaaagagctcgaagacttacaaaccagaagacattgcccggtccctcttaaggatgatctcaaataacatcggacagaattgcatacttgaatgctcttcgttttgggctcaagcggatctttttgggaggattcttcatccgcgaccatgcttatacaatggacacaatctccgttgcagttgatttctggtcgaagggtgaggccaaagcaatgttcttgcggcatgagggatttcttggagccctaggagctttcatgaactacaaagatggaagtacagattccatgccccctcagttagttgagcaacaagccgccaagaggagttcaagttgcatagtcgataggattcataactctacgcatgtgcaggaaaatgaaaatggcgccacagactgtagattgcgagttagtagctcatttaaaatttatgatgaggtcaaaaggtgttgacctatgaaacaactagcatatgtacaaaaattaacgaggatgtcaaaagaatctgttgtttctattcctagttaagtaagcaacaaaatttcagatttatatgtatatgtatttgtcctgcaatagatttgtagaaccttgacatgtgatgaagtgagaaatgttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="56078" stop="53623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55778" g_stop="55646" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55645" i_stop="54905" i_length="741">
            <donor d_prob="0.832" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54904" g_stop="54792" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="249" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54791" i_stop="54357" i_length="435">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54356" g_stop="53923" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="683" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E554569" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554569" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55778" e_stop="55646"/>
          <exon e_start="54904" e_stop="54792"/>
          <exon e_start="54356" e_stop="53923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGGCCTTGCATCAACAGCCATAGCGTCTAGCTTCGGTAAGGCGATCTCAGAAAA-CAAAGAGCTCGAAGACT-ACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAG-GTAATTATGCGGGTCAAGATGTTTCTCTCAGCAGTATCTGTAGCCTTTCCTAACTGAGAATATTTCATTTCTCTCCATATGATGAATAATACTGTTCCGATTAGATTTGTTTTGCATACTACTCTCCTCTCACAAGGATACAAAGAGGGATTGAAAGAAAACTCAGGAGAAGAGCAGATAGATAATCCACCGGATACTAATTGGATACCTCGTATTGCACGTTTTCATTTCATGCTGACAGTAACTCTGTATATTCTTGGACATTTGATTGTAACATGGGATATTGTTGTTAAAATGACATCATATGTTGGAAGATACTAAAACCTAATACAACTTCTGCATTAGTCTTTAGTCTTTTCATTGCTAGAAACTGTCCGGTGGTGTTATAGACATGAATCTGCTACTTTGGTTCCTGAATGAATTTACATTTCCTATTTGAAACATTTCATTATAGTAGTCTTCATTAAATGAATTGATTTTTATATAAGTGGCACCAAGTTGGTCTATGGTTTAGTATGTTAGATATTCTGTTCCGAAGTGATGCTTTGACTGAACAAGAATGGCAAACATGAACACCTGAATAACTTGAGAAGTATGACTTTGCAACCAGCGCTCACGAAATGGAAGAAATATAGGGCCTCTCCTTCCATTCTTTTGCTATAATTTATTTGTTAAAATTGTTAAGAAGTCATTTTCTTATTGTTGCTGACTTTTTTTCTTCTATTGGTTTTGCTTTGTTAGATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTGGTAATTGCTATATCCACTTATTGTCAGATAATTGGTATTTTCCTTATTACCAAGTTACTTACAATCATAGCTCCCATAATTTTTCTTCTGAATATAAGCCTTGGTTAGTAGAGCTACCCGGCACCCATGCTAGTGGGAAGTAGTGAGGTATGCACAAGCTGGTCTGGACACCATCCTTACAAAAGGAGATCTTTTGAATAACATTAGTTTCTTTAGTGATGAATTAGTGTGAAATTCGTACGATATATTAATCGATTGGCACACTCTTTTAACGCAAGGGATAAATAGTTCTCACTAGCTATGAGTACTATTCTAAAAAAAGAAAGAGCACTCACCTCACTAGCTAGTTCTGAAACATGGTTTCACAATTTATCACTGTTGACTCCTCTAGGTAATTTCTCCTGAATTCAAGTTAACAGAATGCACTACGTGCAGGTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAGGTCAAAAGGTGTTGACCTATGAAACAACTAGCATATGTACAAAAATTAACGAGGATGTCAAAAGAATCTGTTGTTTCTATTCCTAGTTAAGTAAGCAACAAAATTTCAGATTTATATGTATATGTATTTGTCCTGCAATAGATTTGTAGAACCTTGACATGTGATGAAGTGAGAAATGTTATTA</genome_strand>
        <mrna_strand>GATTGGCCTTGCATCAACAGCCATAGCGTCTAGCTTCGGTAAGGCGATCTCAGAAAACCAAAGAGCTCGAAGACTTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAGGTCAAAAGGTGTTGACCTATGAAACAACTAGCATATGTACAAAAATTAACGAGGATGTCAAAAGAATCTGTTGTTTCTATTCCTAGTTAAGTAAGCAACAAAATTTCAGATTTATATGTATATGTATTTGTCCTGCAATAGATTTGTAGAACCTTGACATGTGATGAAGTGAGAAATGTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349247" ref_strand="+" ref_description="SGN-E349247 [cTOS-2-J7]">
      <seq>aacagccatagcgtctagcttcggtaaggcgatctcagaaaacaaagagctcgaagactacaaaccagaagacattgcccggtccctcttaaggatgatctcaaataacatcggacagattgcatacttgaatgctcttcgttttgggctcaagcggatctttttgggaggattcttcatccgcgaccatgcttatacaatggacacaatctccgttgcagttgatttctggtcgaagggtgaggccaaagcaatgttcttgcggcatgagggatttcttggagccctaggagctttcatgaactacaaagatggaagtacagattccatgccccctcagttagttgagcaacaagccgccaagaggagttcaagttgcatagtcgataggattcataactctacgcatgtgcaggaaaatgaaaatggcgccacagactgtagattgcgagttagtagctcatttaaaatttatgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="56063" stop="53807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55763" g_stop="55646" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55645" i_stop="54905" i_length="741">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54904" g_stop="54792" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="231" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54791" i_stop="54357" i_length="435">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54356" g_stop="54107" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="481" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E349247" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55763" e_stop="55646"/>
          <exon e_start="54904" e_stop="54792"/>
          <exon e_start="54356" e_stop="54107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCCATAGCGTCTAGCTTCGGTAAGGCGATCTCAGAAAACAAAGAGCTCGAAGACTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAGGTAATTATGCGGGTCAAGATGTTTCTCTCAGCAGTATCTGTAGCCTTTCCTAACTGAGAATATTTCATTTCTCTCCATATGATGAATAATACTGTTCCGATTAGATTTGTTTTGCATACTACTCTCCTCTCACAAGGATACAAAGAGGGATTGAAAGAAAACTCAGGAGAAGAGCAGATAGATAATCCACCGGATACTAATTGGATACCTCGTATTGCACGTTTTCATTTCATGCTGACAGTAACTCTGTATATTCTTGGACATTTGATTGTAACATGGGATATTGTTGTTAAAATGACATCATATGTTGGAAGATACTAAAACCTAATACAACTTCTGCATTAGTCTTTAGTCTTTTCATTGCTAGAAACTGTCCGGTGGTGTTATAGACATGAATCTGCTACTTTGGTTCCTGAATGAATTTACATTTCCTATTTGAAACATTTCATTATAGTAGTCTTCATTAAATGAATTGATTTTTATATAAGTGGCACCAAGTTGGTCTATGGTTTAGTATGTTAGATATTCTGTTCCGAAGTGATGCTTTGACTGAACAAGAATGGCAAACATGAACACCTGAATAACTTGAGAAGTATGACTTTGCAACCAGCGCTCACGAAATGGAAGAAATATAGGGCCTCTCCTTCCATTCTTTTGCTATAATTTATTTGTTAAAATTGTTAAGAAGTCATTTTCTTATTGTTGCTGACTTTTTTTCTTCTATTGGTTTTGCTTTGTTAGATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTGGTAATTGCTATATCCACTTATTGTCAGATAATTGGTATTTTCCTTATTACCAAGTTACTTACAATCATAGCTCCCATAATTTTTCTTCTGAATATAAGCCTTGGTTAGTAGAGCTACCCGGCACCCATGCTAGTGGGAAGTAGTGAGGTATGCACAAGCTGGTCTGGACACCATCCTTACAAAAGGAGATCTTTTGAATAACATTAGTTTCTTTAGTGATGAATTAGTGTGAAATTCGTACGATATATTAATCGATTGGCACACTCTTTTAACGCAAGGGATAAATAGTTCTCACTAGCTATGAGTACTATTCTAAAAAAAGAAAGAGCACTCACCTCACTAGCTAGTTCTGAAACATGGTTTCACAATTTATCACTGTTGACTCCTCTAGGTAATTTCTCCTGAATTCAAGTTAACAGAATGCACTACGTGCAGGTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAG</genome_strand>
        <mrna_strand>AACAGCCATAGCGTCTAGCTTCGGTAAGGCGATCTCAGAAAACAAAGAGCTCGAAGACTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448009" ref_strand="+" ref_description="SGN-E448009 [cSTS-1-O22]">
      <seq>cagatagatcagaatgatttgtatccctacctccttgtcaacattgggtctggggttagcatgataaaggtagatggagatgggaaatttcagagagttagtggaactagcgtcggtggtggcactttcttgggactagggaaacttttgaccaaatgccaaagttttgatgagttactggaattgagccatcagggaaacaacagagtgatagacatgctcgttggagatatttatgggggattggactattcaaagattggccttgcatcaacagccatagcgtctagcttcggcaaggcaatctcagaaaacaaagagctcgaagactacaaaccagaagacattgcccggtccctcttaaggatgatctcaaataacatcggacagattgcatacttaaatgctcttcgttttgggctcaagcgcatctttttgggaggattcttcattcgtgaccatgcttatacaatggacacaatctccgttgcagttgatttctggtcgaagggtgaggccaaagcaatgttcttgcggcatgaggggtttcttggagccctaggagctttcatgaactacaaagatgaaagtacagattccatgccccctcagttagttgagcaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58185" stop="53933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57885" g_stop="57817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57816" i_stop="57253" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57252" g_stop="57158" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="164" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57157" i_stop="57067" i_length="91">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57066" g_stop="56973" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="258" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56972" i_stop="55778" i_length="1195">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.867" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55777" g_stop="55646" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="390" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55645" i_stop="54905" i_length="741">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54904" g_stop="54792" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="503" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54791" i_stop="54357" i_length="435">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54356" g_stop="54232" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="628" r_length="125" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E448009" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57885" e_stop="57817"/>
          <exon e_start="57252" e_stop="57158"/>
          <exon e_start="57066" e_stop="56973"/>
          <exon e_start="55777" e_stop="55646"/>
          <exon e_start="54904" e_stop="54792"/>
          <exon e_start="54356" e_stop="54232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATAGATCAGAATGATTTATATCCCTACCTCCTTGTCAACATTGGGTCTGGGGTTAGCATGATAAAGGTAAGCTTCACAGCCTAGATTCCTTCAATTCGATGTGAACACTTGTTCACACTGATCTTCAAGGGTTAGGACCTGCAAGGAGTTGACCAAAGCTCTCCTTATCCTATTTCACGCATGATTTAGATGAAATTCCATAAGCTTCATACTGTTGTGCTATTTTCTAACATACAGCTTTCTTCTCACTGTTTTCAACGTGTGGGTGCATTCTTATTGCTTATATTATCTCGTGCAGGACAAGCAGTTAATCTTCTGCATAGTGTTAGCATCCAATCTATAAATTCAAAAAGTTAATACCTACAACCACTATGTTATTTTTCATGTGTTAATGAGGAAAATATTTCCTTTGAATTATATTTCTGATGATGTTTTCATTAACACATTTTTTTAGAACTAAAAACTCGATCAAAACTGTTCTAGTAATATAGGTCTTCGATTTGTTCATTTTTCGCTTCTTTAAATGCTGACACTGCTCACAAATAATTCTGCATACGCCACCGTGATTTTTAGTACTTCATAGCTGACTCGCTGTTTGTTATATCAATATTTTATTTTTATTCCTTTTAGGTAGATGGAGATGGGAAATTTCAGAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGACTAGGGAAACTTTTGACTAAATGCCAAAGGTTACTTTCATTTCAATTATAAGTAACGATTTTCAATATCATTAATTGTTTTCTCTTTCTGCTGAATTTTCTTATGTGTTCGTTATTACAGTTTTGATGAGTTGCTGGAACTGAGCCATCTGGGAAATAACAGAGTGATAGACATGCTCGTTGGAGATATTTACGGGGGATTGGACTATTCAAAGGTATAAACTTTGATGTGTACTTTGTTTTTCTTTATGCTCTTTTACACCTTTTCTTTCTTTTGGATCTGTTGTAGTTTAAACTATCTCAGGTCCACTATGTCACATCTTGGATATAGAAAGTCTAAATGAATAATGGAAATGGTCTACAAAGTCCAAACTTTAGTCCAAGTTGAGCAATTTCTTTCCCAACTCCCAATTTGTGTCCCATCACATCCTCAATCCACTATGTTTTGGCTGTAAAGGTTCTCTTATCAAGATAGGTGAAAGTAAATTCATTTTTGATCATAAGCAAAAAGGGGATGACACTAGTAGAGTGAACTTTGCTTGTGCCTTTCATCACTTGGAATTGTGAATATTAAAGAAATGATAAGTTGAGTCAACCGCCCTCTTAAACCTTTTTTTCTCTTCTTTCTGCATCTCCCTTTTGTTCACATTCCTCCAATCTACTTTCTGTTTTTCTCCGGATGTGCTCTGCCAATGCAAGACCTTTATGCAGGAGAATTTTAAGGCTAGCTTGTTACAATTTACAAGTTCATGTCTTCTTGTGTTACCTTCTCTGAATCGATAAATTGCACCCCCCCTGAGTGGATTTGTTTGTCTTATTTTGTCTTGCTAATTCTCTAAACACTTACTGGGCCTCTTGTGTACAGAAATTCTCATTTCATCCCAAAAGTATGGATGGGGTCACAAACTTGTTTCCAATTGTCTAAATTTTCGCAATTCCTTGTCGACACCAGGACCCAGAAAGAAATGTTCCCAGTCATGATGTTCACTTTGAAAAGGTGCTGCAAACAATGCCAGACCGAAATTGGGACTAATTCTCTTCTATTGCTTGAGATATGCATCGCCCCTTTAGTTGGTGAGAATTTGGAGAAAAGTCATTAAAATTAGGGAAAAGGCTCTAAAATATTCCTCTACTATACAAAATGTCTTAATTTCATCCTCCCTCCATTATACTTAGAGGTTATCCATACCCCATTAGCAAATCCTTTTAGTTGTCAGTTGTTATAGATGAACTCATTAACTCCACCAAGCAGTTCCCTATTGTACCTATGTTTCTGCTGTTGGAAGTTGGCCGAGTAATTGAAATCTATCATAATAGGAGTTGATGAATTTTGCAAATCGAGTTCCCATATTTTCAGTTTTTCTAAATCTTCATATTCAGGGTGATTAAGAATTTAGTGATTTATGACAGATTGGCCTTGCATCAACAGCCATAGCGTCTAGCTTCGGTAAGGCGATCTCAGAAAACAAAGAGCTCGAAGACTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAGGTAATTATGCGGGTCAAGATGTTTCTCTCAGCAGTATCTGTAGCCTTTCCTAACTGAGAATATTTCATTTCTCTCCATATGATGAATAATACTGTTCCGATTAGATTTGTTTTGCATACTACTCTCCTCTCACAAGGATACAAAGAGGGATTGAAAGAAAACTCAGGAGAAGAGCAGATAGATAATCCACCGGATACTAATTGGATACCTCGTATTGCACGTTTTCATTTCATGCTGACAGTAACTCTGTATATTCTTGGACATTTGATTGTAACATGGGATATTGTTGTTAAAATGACATCATATGTTGGAAGATACTAAAACCTAATACAACTTCTGCATTAGTCTTTAGTCTTTTCATTGCTAGAAACTGTCCGGTGGTGTTATAGACATGAATCTGCTACTTTGGTTCCTGAATGAATTTACATTTCCTATTTGAAACATTTCATTATAGTAGTCTTCATTAAATGAATTGATTTTTATATAAGTGGCACCAAGTTGGTCTATGGTTTAGTATGTTAGATATTCTGTTCCGAAGTGATGCTTTGACTGAACAAGAATGGCAAACATGAACACCTGAATAACTTGAGAAGTATGACTTTGCAACCAGCGCTCACGAAATGGAAGAAATATAGGGCCTCTCCTTCCATTCTTTTGCTATAATTTATTTGTTAAAATTGTTAAGAAGTCATTTTCTTATTGTTGCTGACTTTTTTTCTTCTATTGGTTTTGCTTTGTTAGATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTGGTAATTGCTATATCCACTTATTGTCAGATAATTGGTATTTTCCTTATTACCAAGTTACTTACAATCATAGCTCCCATAATTTTTCTTCTGAATATAAGCCTTGGTTAGTAGAGCTACCCGGCACCCATGCTAGTGGGAAGTAGTGAGGTATGCACAAGCTGGTCTGGACACCATCCTTACAAAAGGAGATCTTTTGAATAACATTAGTTTCTTTAGTGATGAATTAGTGTGAAATTCGTACGATATATTAATCGATTGGCACACTCTTTTAACGCAAGGGATAAATAGTTCTCACTAGCTATGAGTACTATTCTAAAAAAAGAAAGAGCACTCACCTCACTAGCTAGTTCTGAAACATGGTTTCACAATTTATCACTGTTGACTCCTCTAGGTAATTTCTCCTGAATTCAAGTTAACAGAATGCACTACGTGCAGGTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAG</genome_strand>
        <mrna_strand>CAGATAGATCAGAATGATTTGTATCCCTACCTCCTTGTCAACATTGGGTCTGGGGTTAGCATGATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGGAGATGGGAAATTTCAGAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGACTAGGGAAACTTTTGACCAAATGCCAAAG...........................................................................................TTTTGATGAGTTACTGGAATTGAGCCATCAGGGAAACAACAGAGTGATAGACATGCTCGTTGGAGATATTTATGGGGGATTGGACTATTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCTTGCATCAACAGCCATAGCGTCTAGCTTCGGCAAGGCAATCTCAGAAAACAAAGAGCTCGAAGACTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCATACTTAAATGCTCTTCGTTTTGGGCTCAAGCGCATCTTTTTGGGAGGATTCTTCATTCGTGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGGTTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGAAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585379" ref_strand="+" ref_description="SGN-E585379 [67838]">
      <seq>ggagcaaattttctgcttaaggctgtcaaccatgaagtttatacatatattggaggtcaaaaggagtatgtgcagatagatcagaatgatttatatccctacctccttgtcaacattgggtctggggttggcatgataaaggtagatggagatgggaaatttcagagagttagtggaactagcgtcggtggtggcactttcttgggactagggaaacttttgaccaaatgccaaagttttgatgagttactggaattgagccatcagggaaacaacagagtgatagacatgctcgttggagatatttatgggggattggactattcaaagattggccttgcatcaacagccatagcgtctagcttcggcaaggcaatctcagaaaacaaagagctcgaagactacaaaccagaagacattgcccggtccctcttaaggatgatctcaaataacatcggacagattgcatacttaaatgctcttcgttttgggctcaagcgcatctttttgggaggattcttcattcgtgaccatgcttatacaatggacacaatctccgttgcagttgatttctggtcgaagggtgaggccaaagcaatgttcttgcggcatgaggggtttcttggagccctaggagctttcatgaactacaaagatgaaagtacagattccatgcccccctcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58954" stop="53946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58654" g_stop="58634" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58633" i_stop="57937" i_length="697">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.705" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57936" g_stop="57817" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="141" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57816" i_stop="57253" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57252" g_stop="57158" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="236" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57157" i_stop="57067" i_length="91">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57066" g_stop="56973" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="330" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56972" i_stop="55778" i_length="1195">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.867" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55777" g_stop="55646" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="462" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55645" i_stop="54905" i_length="741">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54904" g_stop="54792" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="575" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54791" i_stop="54357" i_length="435">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54356" g_stop="54246" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="687" r_length="112" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E585379" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58654" e_stop="58634"/>
          <exon e_start="57936" e_stop="57817"/>
          <exon e_start="57252" e_stop="57158"/>
          <exon e_start="57066" e_stop="56973"/>
          <exon e_start="55777" e_stop="55646"/>
          <exon e_start="54904" e_stop="54792"/>
          <exon e_start="54356" e_stop="54246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCAAATTTTCTGCTTAAGGTGGGTTTTCTTTTATAGCAGAAAGCAGTATTTGGTTTGTACTATTTTCTTCAGATATTGAAGTCCAGGCACATGAAATCCTTTTAAAATAATTTATATTTCTTTTGTCCGCCAATCTTCAGCTTGGTTTGCTTAAACTGAATAAGTACCTGGAAGGTATTTGTGGTCTCAGGAATACATATGTGTTTTCTCTAAATTAGATTCTTGCTTAGGGAAATGATTGTGTGTGTATAGCCTAATTTACTGGGTTTATTGTTTTATTAATTTATCATGATTATGTGTTACTTTCTTGATTGAATGCTGCACCCTCAAGATCGGTAAAAGATTGATAAAGGCACATTTCCCATGGAAGTGGTTTCTCTTTTCTCTCCTCCGTCCAGTATTTAGCTGAATTGAGTAGAAGTAACATATGGAGTAATTTTCCCTTTCTTGGTATGGTACATTTCGATAATTTCTGGTAAATGAAGTACTCTTTTTAAGGCCAGAAAATCTGTTAATTTTTTTACTCTTTTCCACGAGACCAAGAAGTCTCCAGGATTCAAGCCTAACTAGTGAGGCTAAGACCACATTGGCAACAGAAACCCTTCTCAACTGGATAAATTTCGTGCTCTTTTCTAATTTCAGTACAAAATATTTTATTTTATTTTTAAAAGAAAGAGGTTTGTTTGACCCCATTCCTCTCTTTTTCTCTGAGCAGGCTGCCAATCATGAAGTTTATACATATATTGGAGGTCAAAAGGAGTATGTGCAGATAGATCAGAATGATTTATATCCCTACCTCCTTGTCAACATTGGGTCTGGGGTTAGCATGATAAAGGTAAGCTTCACAGCCTAGATTCCTTCAATTCGATGTGAACACTTGTTCACACTGATCTTCAAGGGTTAGGACCTGCAAGGAGTTGACCAAAGCTCTCCTTATCCTATTTCACGCATGATTTAGATGAAATTCCATAAGCTTCATACTGTTGTGCTATTTTCTAACATACAGCTTTCTTCTCACTGTTTTCAACGTGTGGGTGCATTCTTATTGCTTATATTATCTCGTGCAGGACAAGCAGTTAATCTTCTGCATAGTGTTAGCATCCAATCTATAAATTCAAAAAGTTAATACCTACAACCACTATGTTATTTTTCATGTGTTAATGAGGAAAATATTTCCTTTGAATTATATTTCTGATGATGTTTTCATTAACACATTTTTTTAGAACTAAAAACTCGATCAAAACTGTTCTAGTAATATAGGTCTTCGATTTGTTCATTTTTCGCTTCTTTAAATGCTGACACTGCTCACAAATAATTCTGCATACGCCACCGTGATTTTTAGTACTTCATAGCTGACTCGCTGTTTGTTATATCAATATTTTATTTTTATTCCTTTTAGGTAGATGGAGATGGGAAATTTCAGAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGACTAGGGAAACTTTTGACTAAATGCCAAAGGTTACTTTCATTTCAATTATAAGTAACGATTTTCAATATCATTAATTGTTTTCTCTTTCTGCTGAATTTTCTTATGTGTTCGTTATTACAGTTTTGATGAGTTGCTGGAACTGAGCCATCTGGGAAATAACAGAGTGATAGACATGCTCGTTGGAGATATTTACGGGGGATTGGACTATTCAAAGGTATAAACTTTGATGTGTACTTTGTTTTTCTTTATGCTCTTTTACACCTTTTCTTTCTTTTGGATCTGTTGTAGTTTAAACTATCTCAGGTCCACTATGTCACATCTTGGATATAGAAAGTCTAAATGAATAATGGAAATGGTCTACAAAGTCCAAACTTTAGTCCAAGTTGAGCAATTTCTTTCCCAACTCCCAATTTGTGTCCCATCACATCCTCAATCCACTATGTTTTGGCTGTAAAGGTTCTCTTATCAAGATAGGTGAAAGTAAATTCATTTTTGATCATAAGCAAAAAGGGGATGACACTAGTAGAGTGAACTTTGCTTGTGCCTTTCATCACTTGGAATTGTGAATATTAAAGAAATGATAAGTTGAGTCAACCGCCCTCTTAAACCTTTTTTTCTCTTCTTTCTGCATCTCCCTTTTGTTCACATTCCTCCAATCTACTTTCTGTTTTTCTCCGGATGTGCTCTGCCAATGCAAGACCTTTATGCAGGAGAATTTTAAGGCTAGCTTGTTACAATTTACAAGTTCATGTCTTCTTGTGTTACCTTCTCTGAATCGATAAATTGCACCCCCCCTGAGTGGATTTGTTTGTCTTATTTTGTCTTGCTAATTCTCTAAACACTTACTGGGCCTCTTGTGTACAGAAATTCTCATTTCATCCCAAAAGTATGGATGGGGTCACAAACTTGTTTCCAATTGTCTAAATTTTCGCAATTCCTTGTCGACACCAGGACCCAGAAAGAAATGTTCCCAGTCATGATGTTCACTTTGAAAAGGTGCTGCAAACAATGCCAGACCGAAATTGGGACTAATTCTCTTCTATTGCTTGAGATATGCATCGCCCCTTTAGTTGGTGAGAATTTGGAGAAAAGTCATTAAAATTAGGGAAAAGGCTCTAAAATATTCCTCTACTATACAAAATGTCTTAATTTCATCCTCCCTCCATTATACTTAGAGGTTATCCATACCCCATTAGCAAATCCTTTTAGTTGTCAGTTGTTATAGATGAACTCATTAACTCCACCAAGCAGTTCCCTATTGTACCTATGTTTCTGCTGTTGGAAGTTGGCCGAGTAATTGAAATCTATCATAATAGGAGTTGATGAATTTTGCAAATCGAGTTCCCATATTTTCAGTTTTTCTAAATCTTCATATTCAGGGTGATTAAGAATTTAGTGATTTATGACAGATTGGCCTTGCATCAACAGCCATAGCGTCTAGCTTCGGTAAGGCGATCTCAGAAAACAAAGAGCTCGAAGACTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAGGTAATTATGCGGGTCAAGATGTTTCTCTCAGCAGTATCTGTAGCCTTTCCTAACTGAGAATATTTCATTTCTCTCCATATGATGAATAATACTGTTCCGATTAGATTTGTTTTGCATACTACTCTCCTCTCACAAGGATACAAAGAGGGATTGAAAGAAAACTCAGGAGAAGAGCAGATAGATAATCCACCGGATACTAATTGGATACCTCGTATTGCACGTTTTCATTTCATGCTGACAGTAACTCTGTATATTCTTGGACATTTGATTGTAACATGGGATATTGTTGTTAAAATGACATCATATGTTGGAAGATACTAAAACCTAATACAACTTCTGCATTAGTCTTTAGTCTTTTCATTGCTAGAAACTGTCCGGTGGTGTTATAGACATGAATCTGCTACTTTGGTTCCTGAATGAATTTACATTTCCTATTTGAAACATTTCATTATAGTAGTCTTCATTAAATGAATTGATTTTTATATAAGTGGCACCAAGTTGGTCTATGGTTTAGTATGTTAGATATTCTGTTCCGAAGTGATGCTTTGACTGAACAAGAATGGCAAACATGAACACCTGAATAACTTGAGAAGTATGACTTTGCAACCAGCGCTCACGAAATGGAAGAAATATAGGGCCTCTCCTTCCATTCTTTTGCTATAATTTATTTGTTAAAATTGTTAAGAAGTCATTTTCTTATTGTTGCTGACTTTTTTTCTTCTATTGGTTTTGCTTTGTTAGATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTGGTAATTGCTATATCCACTTATTGTCAGATAATTGGTATTTTCCTTATTACCAAGTTACTTACAATCATAGCTCCCATAATTTTTCTTCTGAATATAAGCCTTGGTTAGTAGAGCTACCCGGCACCCATGCTAGTGGGAAGTAGTGAGGTATGCACAAGCTGGTCTGGACACCATCCTTACAAAAGGAGATCTTTTGAATAACATTAGTTTCTTTAGTGATGAATTAGTGTGAAATTCGTACGATATATTAATCGATTGGCACACTCTTTTAACGCAAGGGATAAATAGTTCTCACTAGCTATGAGTACTATTCTAAAAAAAGAAAGAGCACTCACCTCACTAGCTAGTTCTGAAACATGGTTTCACAATTTATCACTGTTGACTCCTCTAGGTAATTTCTCCTGAATTCAAGTTAACAGAATGCACTACGTGCAGGTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATG-CCCCCTCAGTT</genome_strand>
        <mrna_strand>GGAGCAAATTTTCTGCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAACCATGAAGTTTATACATATATTGGAGGTCAAAAGGAGTATGTGCAGATAGATCAGAATGATTTATATCCCTACCTCCTTGTCAACATTGGGTCTGGGGTTGGCATGATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGGAGATGGGAAATTTCAGAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGACTAGGGAAACTTTTGACCAAATGCCAAAG...........................................................................................TTTTGATGAGTTACTGGAATTGAGCCATCAGGGAAACAACAGAGTGATAGACATGCTCGTTGGAGATATTTATGGGGGATTGGACTATTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCTTGCATCAACAGCCATAGCGTCTAGCTTCGGCAAGGCAATCTCAGAAAACAAAGAGCTCGAAGACTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCATACTTAAATGCTCTTCGTTTTGGGCTCAAGCGCATCTTTTTGGGAGGATTCTTCATTCGTGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGGTTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGAAAGTACAGATTCCATGCCCCCCTCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405735" ref_strand="+" ref_description="SGN-E405735 [PPI-1-O10]">
      <seq>aaaggaattgatgggaaattagaaaagagtgattccacttctgctgatgaaatttcacatttgtctattgacattggaggctccctcatcaagattgtatacttttcaaccaacagtaagtgcagcacaaatgatgaggcaccaacgttatcaaaagaaagacaggaagttcccaatggagaccttaaccatcacattcttagtggcaggctttatttcgttaaattcgagactagcaagattgaggactgcataaagtttttgtcttccaagaaacttcaacaatgcggtgctcaatgtcatcattctcatgctgttgacaagatcaagattaaggcaacaggtggaggagctttcaagtttgccgatctattcaaagaaaaacttggcctaactctggacaaggtagaggaaatggagtctgttgttactggagcaaattttctgcttaaggctgtcaaccatgaagtttatacgtatattggaggtcaaaaggagtatgtgcagatagatcagaatgatttgtatccctacctccttgtcaacattgggtctggggttagcatgataaaggtagatggagatgggaaatttcagagagttagtggaactagcgtcggtggtggcactttcttgggactagggaaacttttgaccaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62811" stop="56864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62511" g_stop="62433" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62432" i_stop="61039" i_length="1394">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61038" g_stop="60829" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="289" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60828" i_stop="59762" i_length="1067">
            <donor d_prob="0.548" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59761" g_stop="59715" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="336" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59714" i_stop="58751" i_length="964">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58750" g_stop="58634" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="453" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58633" i_stop="57937" i_length="697">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.705" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57936" g_stop="57817" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="573" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57816" i_stop="57253" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57252" g_stop="57164" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="662" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E405735" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62511" e_stop="62433"/>
          <exon e_start="61038" e_stop="60829"/>
          <exon e_start="59761" e_stop="59715"/>
          <exon e_start="58750" e_stop="58634"/>
          <exon e_start="57936" e_stop="57817"/>
          <exon e_start="57252" e_stop="57164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATCGACATTGGAGGTAATTTTTTGTTCGAATCGTACATTTCTGGGGTTTTTTTTTTGTTGGTGTGTGAGATCTTGAGATTCTTATTTGTTAAAGTGAAACGTGCATTTTTAATTTTAATGTGATTTTGGAGAGTTGTTTGTTTTCTGTTTCTTATTAGTTTGACGATAGAGTTTAAGGAAAAAGAAAAAGAAAAGATCTTTTTTTTTGTATTGAGACTCATAATTCAGTTATGTTAACTGAGGAACTAAGAAAGAGAAATTTAGAAACTTCTGGAATTGCTATGTGCTTGATGGTTTATACTGGACTACATGTTTCAATATGTGTTGCTCCAACTCTTCAAAAATATTATTGGGTTAGTGTTGGATGGAGTAGTGCATTTTTGGAGTATACGACACGGGTGTGGATTTTCTTTTTTGGAGAGTCTGAGCAATATAGGTTTCAATGAGGGTTAAAGGGGGATGAATGAGATGGCGGAGTAATTGATTCATAGAAATGAAAATGTGGAAAAAATGATATTCATATATGGCTGTATTGCACTAGTTCACTAGTTCTACTTAATTGAGTGATGATCCAACTTCCTTTTTTCATTTCGCAATCCTATGTAGTGATATATCATTGTATCATGTTTTTTTCTCTGAGCTCGAAAGGTTGAAGTTGTTCATTTTAATCTTAAATAAGAGGGAGTCTTGAGCGAAGAGGCGGACATTTGAATGGCAAAACATGGGCATATCCAACAGGAAGTGGTAAACGTGGTTGGACAAGTGTAAAAGAAGACTGGATTAAAACCATTTATATGAGATTGTCGACAATCGGAACGTATCAATCTTGAAGAAATGATTCCCTAGTTTGGAATAACAATTGTTGGAATTGACTGGTCAAAATTAACAAAAAGACTCTTGTTGGAATTGGTAGTTGTTCAAAGTCTAATCTAGCTGAAACCACTCTTTGAAAACACAGAAATATCATCAACTGAGAGTGATCTCCAGAAGTCAACCAGTTTCTTCTGTGCTACTTAACTTAAGCATTTTTGTAGATTATCAACTTTTAGATAGATGGTTTATGACCTCAAGATACATCTGAATGCGTCTTAGTGAAAATTCTTGTTTTTCTTTGCAACAGAACTTCTGTCTTAGTTTAAAATTGTCATTTCCTGCCCTACTTTGGAATTTGGAAGTCCTTCCGTTCCATAAAGGGATATAGAATCTCACTAATTTTTTCATAAGTGGAACAGAAATTAACTGTTTTACAATATATTGATAAGCATCTCCTATGTACACAGTCAGATATTAAAGAAGCTTTATGCAACTTGGCTAGCTTTAAAGATCCTCCTACTAACTACCTATTAAAGAATATTTTGAGGACCAAAATAGGAAAAATGCTAAATGAAAGGAACTTTTCTTTTGCAGGCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTCAGTGGCAGGCTTTATTTCATTAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAAAAATGCGGTAGGTATTCTTTGTGGTGCTTACACCTTAGATGTAATTGTTTTTCCTATGCTGACTTAATTGGTTATGAACTGGCAGCTAGGTAAACATTTAGGGAGCTTGATTATGAACATGAACTTAATATATTTTGATAAGTGAAGAAGAATTTATTGTTTCACCTTTGATTATACGCAAATCTAACTCATTGGAGCTGTCAGCATCATTTGGAATATGTACATGTGTGGCTGAGCTTGATCCTGATTGTCACTCTTTCTTTTGTTTTTAAAAAAGAAACGGATTTCCTTTTTTATTTAGTTCACCCAGATTTTGTAATGCAGCTCATAATTCACAGTATACACATGAACAAAATTTTCAATTTTAGCCACGGAGTTTTAAATTTTTTATCTTATGTCTGCTCATTTGTGTTTCTTTCTGTCCGGTTATTCATCTTTACAAAGTGAAGTAATAGAGGCACAGGGAAAGGATTCTTTTCCTAGTATAGCTCTTCTCCAGGTGTAGTAGAGTTAAGAGAATGAGAACAAAGATGGCCTCTCAATGGTCAAAAAGCTAGAATAGAGAGGACATGAAATAAACTCTTGCTCGTAAGTAGCAGTGAGAGAATTCAGGAGTTGCAGGAAATTGGAAAGAAAAAGAAAACAGATCAGCTGGATCTACACTTGAGCGGTTGCTTTAACACTAGCATAGACTTTAAGATGTTAATTTACTTAAATATTTTATTAGTGATAGTGGAAGAACAATATTAAATTATCACTAAGTTAACGTGGCACAAGAAACATCTGTACAAACTTTAAAGTGTGGATGATTGAAAGAATTTGAATTCTTGCAAGTGAAGTGTACAGAATAGCACCTTTTTCATTACCTTGGCGTATTTAAAGTGTACAAACAGTCTAGTACGGACAGAAATATGGTTTATATGTAGTTTCAGTTAAGCTTTTAGGTACTCTGGTCACCGTAGGAATCATATGCTCAGTTTAATTAAAGTTTATACTCACAGTTTGTTGTACTTCTTTTGAATAAGTTGTATTATATCATGACCTTCCTAAATCTTACATATTACAATGTTACAGGTGCTCAATGTCATCATTCTCACGCTGTTGACAAGATCAAGATTAAGGTAAAGGAGTTATTTCAAAAGATGTTGGTTCTGTTTCCCACCTCTTTTTCTTTTTCTTTGCTCAATTAGGTGATTATAGGAGGTTTTCCTCAAGACATAGTTTTTTGAGGAATTTATATCCTAAAAAACTTCATCAGAAAGAAACAATATTTGTATCCATTGCGGGATGAAACAAGCTCCTAGAAGTCCAGCAGATCAATTCTGGTTTGCTGGAGAAGCTACTCAATGATAAGTACTGAGGAAGCTACACACTGCAGTCTTCTTGTTGTTTGTACTTTCAAAGTTTAATACTTCTTGAAAATTAAGTTTTTATAAAGTGGAATAAGTAGTGTATGCATTTCTCCTTCTAGAATAAATAAATGCATAACAAAATAAATAAATAAGTGCTCTCTCTTATAATTTAAACTGTAAGATAAGGTGCTTTAGGTCAATTGATATGGTAGTAAGTAGAGTTCTTCAATTTGAGTCTCACGCAGATTAACAAAATAATGCGCATGCTTTGCTAACCCAAAAGAAGAAGGAAGAGGCTACATGGGGACGTGGTAATGACCTGAAATAAATAAATAAAATGTACTCTGTAGTTCAACTTTTAATTGGAATGTCCACAATTCAATGAATTGTAATTAGACTAATGTGCCGGAGTTAATAGTGTATGCATTAGTGTGTGATCGGTAAAACGTTCTAAATACACTAGAGACAGTATTCATAAAAGATTTCAAGCTTAGAGCTAAAGCATTGCACAGAAACCTTTGCATGTAGTACAATTTTCTGAAAACACATTATCAGGTCTTGTAGATGTCCTCTGCCAATGGCTGGAGTATATCTTTTTGGGGGTCAAAGCACCCATGGTCACCGAAGAGCTGTAGTAGAATTTTTCCTCATAATATTTGTAACTAATTTATATGGTGAAATGCTAAATTTATATGACCCATGGAACCTTTTGATGAGTTTTATGCTTGAACAGGCAACAGGTGGTGGAGCTTTCAAGTTTGCCGATCTATTCAAAGAAAAACTTGGCCTAACTCTGGACAAGGTAGAGGAAATGGAGTCTCTTGTTACCGGAGCAAATTTTCTGCTTAAGGTGGGTTTTCTTTTATAGCAGAAAGCAGTATTTGGTTTGTACTATTTTCTTCAGATATTGAAGTCCAGGCACATGAAATCCTTTTAAAATAATTTATATTTCTTTTGTCCGCCAATCTTCAGCTTGGTTTGCTTAAACTGAATAAGTACCTGGAAGGTATTTGTGGTCTCAGGAATACATATGTGTTTTCTCTAAATTAGATTCTTGCTTAGGGAAATGATTGTGTGTGTATAGCCTAATTTACTGGGTTTATTGTTTTATTAATTTATCATGATTATGTGTTACTTTCTTGATTGAATGCTGCACCCTCAAGATCGGTAAAAGATTGATAAAGGCACATTTCCCATGGAAGTGGTTTCTCTTTTCTCTCCTCCGTCCAGTATTTAGCTGAATTGAGTAGAAGTAACATATGGAGTAATTTTCCCTTTCTTGGTATGGTACATTTCGATAATTTCTGGTAAATGAAGTACTCTTTTTAAGGCCAGAAAATCTGTTAATTTTTTTACTCTTTTCCACGAGACCAAGAAGTCTCCAGGATTCAAGCCTAACTAGTGAGGCTAAGACCACATTGGCAACAGAAACCCTTCTCAACTGGATAAATTTCGTGCTCTTTTCTAATTTCAGTACAAAATATTTTATTTTATTTTTAAAAGAAAGAGGTTTGTTTGACCCCATTCCTCTCTTTTTCTCTGAGCAGGCTGCCAATCATGAAGTTTATACATATATTGGAGGTCAAAAGGAGTATGTGCAGATAGATCAGAATGATTTATATCCCTACCTCCTTGTCAACATTGGGTCTGGGGTTAGCATGATAAAGGTAAGCTTCACAGCCTAGATTCCTTCAATTCGATGTGAACACTTGTTCACACTGATCTTCAAGGGTTAGGACCTGCAAGGAGTTGACCAAAGCTCTCCTTATCCTATTTCACGCATGATTTAGATGAAATTCCATAAGCTTCATACTGTTGTGCTATTTTCTAACATACAGCTTTCTTCTCACTGTTTTCAACGTGTGGGTGCATTCTTATTGCTTATATTATCTCGTGCAGGACAAGCAGTTAATCTTCTGCATAGTGTTAGCATCCAATCTATAAATTCAAAAAGTTAATACCTACAACCACTATGTTATTTTTCATGTGTTAATGAGGAAAATATTTCCTTTGAATTATATTTCTGATGATGTTTTCATTAACACATTTTTTTAGAACTAAAAACTCGATCAAAACTGTTCTAGTAATATAGGTCTTCGATTTGTTCATTTTTCGCTTCTTTAAATGCTGACACTGCTCACAAATAATTCTGCATACGCCACCGTGATTTTTAGTACTTCATAGCTGACTCGCTGTTTGTTATATCAATATTTTATTTTTATTCCTTTTAGGTAGATGGAGATGGGAAATTTCAGAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGACTAGGGAAACTTTTGACTAAATG</genome_strand>
        <mrna_strand>AAAGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATTGACATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTTAGTGGCAGGCTTTATTTCGTTAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAACAATGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCAATGTCATCATTCTCATGCTGTTGACAAGATCAAGATTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGGTGGAGGAGCTTTCAAGTTTGCCGATCTATTCAAAGAAAAACTTGGCCTAACTCTGGACAAGGTAGAGGAAATGGAGTCTGTTGTTACTGGAGCAAATTTTCTGCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAACCATGAAGTTTATACGTATATTGGAGGTCAAAAGGAGTATGTGCAGATAGATCAGAATGATTTGTATCCCTACCTCCTTGTCAACATTGGGTCTGGGGTTAGCATGATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGGAGATGGGAAATTTCAGAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGACTAGGGAAACTTTTGACCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698132" ref_strand="+" ref_description="SGN-E698132 [FA05BD11]">
      <seq>cccttttgtgaacaaaattctatatattcttcgccgatcgtgattttgtttattcatgacagttacaaaattctatttttccacttaattgagtgctcaatttgaagaagaagtggaggaggatccgatatggaggtgaagggaattgatgggaaattagaaaagagtgattccacttctgctgatgaaatttcacatttgtctatcgacattggaggctccctcatcaagattgtatacttttcaaccaacagtaagtgcagcacaaatgatgaggcaccaacgttatcaaaagaaagacaggaagttcccaatggagaccttaaccatcacattctcagcggcaggctttatttcattaaattccacactagcaagattgaggactgcataaagtttttgtcttccaagaaacttcaaaaatgcggtgctcaatgtcatcattctcccgctgttgacaagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62949" stop="59423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62649" g_stop="62433" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62432" i_stop="61039" i_length="1394">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61038" g_stop="60829" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="427" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60828" i_stop="59762" i_length="1067">
            <donor d_prob="0.548" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59761" g_stop="59723" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="466" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E698132" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62649" e_stop="62433"/>
          <exon e_start="61038" e_stop="60829"/>
          <exon e_start="59761" e_stop="59723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTTTGAACAAAATTCTATATATTCTTCGCCGATCGTGATTTTGTTTATTCATGACAGTTAGAAAATTCTATTTTTCCACTTAATTGAGTGTTCAATTTGAAGAAGAAGTGGAGGAGGATCCGATATGGAGGTGAAGGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATCGACATTGGAGGTAATTTTTTGTTCGAATCGTACATTTCTGGGGTTTTTTTTTTGTTGGTGTGTGAGATCTTGAGATTCTTATTTGTTAAAGTGAAACGTGCATTTTTAATTTTAATGTGATTTTGGAGAGTTGTTTGTTTTCTGTTTCTTATTAGTTTGACGATAGAGTTTAAGGAAAAAGAAAAAGAAAAGATCTTTTTTTTTGTATTGAGACTCATAATTCAGTTATGTTAACTGAGGAACTAAGAAAGAGAAATTTAGAAACTTCTGGAATTGCTATGTGCTTGATGGTTTATACTGGACTACATGTTTCAATATGTGTTGCTCCAACTCTTCAAAAATATTATTGGGTTAGTGTTGGATGGAGTAGTGCATTTTTGGAGTATACGACACGGGTGTGGATTTTCTTTTTTGGAGAGTCTGAGCAATATAGGTTTCAATGAGGGTTAAAGGGGGATGAATGAGATGGCGGAGTAATTGATTCATAGAAATGAAAATGTGGAAAAAATGATATTCATATATGGCTGTATTGCACTAGTTCACTAGTTCTACTTAATTGAGTGATGATCCAACTTCCTTTTTTCATTTCGCAATCCTATGTAGTGATATATCATTGTATCATGTTTTTTTCTCTGAGCTCGAAAGGTTGAAGTTGTTCATTTTAATCTTAAATAAGAGGGAGTCTTGAGCGAAGAGGCGGACATTTGAATGGCAAAACATGGGCATATCCAACAGGAAGTGGTAAACGTGGTTGGACAAGTGTAAAAGAAGACTGGATTAAAACCATTTATATGAGATTGTCGACAATCGGAACGTATCAATCTTGAAGAAATGATTCCCTAGTTTGGAATAACAATTGTTGGAATTGACTGGTCAAAATTAACAAAAAGACTCTTGTTGGAATTGGTAGTTGTTCAAAGTCTAATCTAGCTGAAACCACTCTTTGAAAACACAGAAATATCATCAACTGAGAGTGATCTCCAGAAGTCAACCAGTTTCTTCTGTGCTACTTAACTTAAGCATTTTTGTAGATTATCAACTTTTAGATAGATGGTTTATGACCTCAAGATACATCTGAATGCGTCTTAGTGAAAATTCTTGTTTTTCTTTGCAACAGAACTTCTGTCTTAGTTTAAAATTGTCATTTCCTGCCCTACTTTGGAATTTGGAAGTCCTTCCGTTCCATAAAGGGATATAGAATCTCACTAATTTTTTCATAAGTGGAACAGAAATTAACTGTTTTACAATATATTGATAAGCATCTCCTATGTACACAGTCAGATATTAAAGAAGCTTTATGCAACTTGGCTAGCTTTAAAGATCCTCCTACTAACTACCTATTAAAGAATATTTTGAGGACCAAAATAGGAAAAATGCTAAATGAAAGGAACTTTTCTTTTGCAGGCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTCAGTGGCAGGCTTTATTTCATTAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAAAAATGCGGTAGGTATTCTTTGTGGTGCTTACACCTTAGATGTAATTGTTTTTCCTATGCTGACTTAATTGGTTATGAACTGGCAGCTAGGTAAACATTTAGGGAGCTTGATTATGAACATGAACTTAATATATTTTGATAAGTGAAGAAGAATTTATTGTTTCACCTTTGATTATACGCAAATCTAACTCATTGGAGCTGTCAGCATCATTTGGAATATGTACATGTGTGGCTGAGCTTGATCCTGATTGTCACTCTTTCTTTTGTTTTTAAAAAAGAAACGGATTTCCTTTTTTATTTAGTTCACCCAGATTTTGTAATGCAGCTCATAATTCACAGTATACACATGAACAAAATTTTCAATTTTAGCCACGGAGTTTTAAATTTTTTATCTTATGTCTGCTCATTTGTGTTTCTTTCTGTCCGGTTATTCATCTTTACAAAGTGAAGTAATAGAGGCACAGGGAAAGGATTCTTTTCCTAGTATAGCTCTTCTCCAGGTGTAGTAGAGTTAAGAGAATGAGAACAAAGATGGCCTCTCAATGGTCAAAAAGCTAGAATAGAGAGGACATGAAATAAACTCTTGCTCGTAAGTAGCAGTGAGAGAATTCAGGAGTTGCAGGAAATTGGAAAGAAAAAGAAAACAGATCAGCTGGATCTACACTTGAGCGGTTGCTTTAACACTAGCATAGACTTTAAGATGTTAATTTACTTAAATATTTTATTAGTGATAGTGGAAGAACAATATTAAATTATCACTAAGTTAACGTGGCACAAGAAACATCTGTACAAACTTTAAAGTGTGGATGATTGAAAGAATTTGAATTCTTGCAAGTGAAGTGTACAGAATAGCACCTTTTTCATTACCTTGGCGTATTTAAAGTGTACAAACAGTCTAGTACGGACAGAAATATGGTTTATATGTAGTTTCAGTTAAGCTTTTAGGTACTCTGGTCACCGTAGGAATCATATGCTCAGTTTAATTAAAGTTTATACTCACAGTTTGTTGTACTTCTTTTGAATAAGTTGTATTATATCATGACCTTCCTAAATCTTACATATTACAATGTTACAGGTGCTCAATGTCATCATTCTCACGCTGTTGACAAGATCA</genome_strand>
        <mrna_strand>CCCTTTTGTGAACAAAATTCTATATATTCTTCGCCGATCGTGATTTTGTTTATTCATGACAGTTACAAAATTCTATTTTTCCACTTAATTGAGTGCTCAATTTGAAGAAGAAGTGGAGGAGGATCCGATATGGAGGTGAAGGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATCGACATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTCAGCGGCAGGCTTTATTTCATTAAATTCCACACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAAAAATGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCAATGTCATCATTCTCCCGCTGTTGACAAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442478" ref_strand="+" ref_description="SGN-E442478 [cSTA-33-N15]">
      <seq>ggcacgaggctcttttttgaacaaaatgctatatattcttcgccgatcgtgatttttttttccaatcagaattgtattttccacttaactgagtgttctttgaagaagaagaagcggcagaaggatcggatatggaggttaaaggaattgatgggaaattagaaaagagtgattccacttctgctgatgaaatttcacatttgtctattgacattggaggctccctcatcaagattgtatacttttcaaccaacagtaagtgcagcacaaatgatgaggcaccaacgctatcaaaagaaagacaggaagttcccaatggagaccttaaccatcacattcttagtggcaggctttatttcgttaatttcgagactagcaagattgaggattgcataaagtttttgtcttccaagaaacttcaacaatgcggtgctcaatgtcatcattctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62955" stop="60507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62659" g_stop="62433" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62432" i_stop="61039" i_length="1394">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61038" g_stop="60829" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="429" r_length="210" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E442478" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62659" e_stop="62433"/>
          <exon e_start="61038" e_stop="60829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCAGTAGCTCTTTTTTGAACAAAATTCTATATATTCTTCGCCGATCGTGATTTTGTTTATTCATGACAGTTAGAAAATTCTATTTTTCCACTTAATTGAGTGTTCAAT-TTGAAGAAGAAGTGG-AGGAGGATCCGATATGGAGGTGAAGGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATCGACATTGGAGGTAATTTTTTGTTCGAATCGTACATTTCTGGGGTTTTTTTTTTGTTGGTGTGTGAGATCTTGAGATTCTTATTTGTTAAAGTGAAACGTGCATTTTTAATTTTAATGTGATTTTGGAGAGTTGTTTGTTTTCTGTTTCTTATTAGTTTGACGATAGAGTTTAAGGAAAAAGAAAAAGAAAAGATCTTTTTTTTTGTATTGAGACTCATAATTCAGTTATGTTAACTGAGGAACTAAGAAAGAGAAATTTAGAAACTTCTGGAATTGCTATGTGCTTGATGGTTTATACTGGACTACATGTTTCAATATGTGTTGCTCCAACTCTTCAAAAATATTATTGGGTTAGTGTTGGATGGAGTAGTGCATTTTTGGAGTATACGACACGGGTGTGGATTTTCTTTTTTGGAGAGTCTGAGCAATATAGGTTTCAATGAGGGTTAAAGGGGGATGAATGAGATGGCGGAGTAATTGATTCATAGAAATGAAAATGTGGAAAAAATGATATTCATATATGGCTGTATTGCACTAGTTCACTAGTTCTACTTAATTGAGTGATGATCCAACTTCCTTTTTTCATTTCGCAATCCTATGTAGTGATATATCATTGTATCATGTTTTTTTCTCTGAGCTCGAAAGGTTGAAGTTGTTCATTTTAATCTTAAATAAGAGGGAGTCTTGAGCGAAGAGGCGGACATTTGAATGGCAAAACATGGGCATATCCAACAGGAAGTGGTAAACGTGGTTGGACAAGTGTAAAAGAAGACTGGATTAAAACCATTTATATGAGATTGTCGACAATCGGAACGTATCAATCTTGAAGAAATGATTCCCTAGTTTGGAATAACAATTGTTGGAATTGACTGGTCAAAATTAACAAAAAGACTCTTGTTGGAATTGGTAGTTGTTCAAAGTCTAATCTAGCTGAAACCACTCTTTGAAAACACAGAAATATCATCAACTGAGAGTGATCTCCAGAAGTCAACCAGTTTCTTCTGTGCTACTTAACTTAAGCATTTTTGTAGATTATCAACTTTTAGATAGATGGTTTATGACCTCAAGATACATCTGAATGCGTCTTAGTGAAAATTCTTGTTTTTCTTTGCAACAGAACTTCTGTCTTAGTTTAAAATTGTCATTTCCTGCCCTACTTTGGAATTTGGAAGTCCTTCCGTTCCATAAAGGGATATAGAATCTCACTAATTTTTTCATAAGTGGAACAGAAATTAACTGTTTTACAATATATTGATAAGCATCTCCTATGTACACAGTCAGATATTAAAGAAGCTTTATGCAACTTGGCTAGCTTTAAAGATCCTCCTACTAACTACCTATTAAAGAATATTTTGAGGACCAAAATAGGAAAAATGCTAAATGAAAGGAACTTTTCTTTTGCAGGCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTCAGTGGCAGGCTTTATTTCATTAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAAAAATGCG</genome_strand>
        <mrna_strand>GGCAC-GAGGCTCTTTTTTGAACAAAATGCTATATATTCTTCGCCGATCGTGATTTT-TTT-TTC----CAATCAG--AATTGTA-TTTTCCACTTAACTGAGTGTTCTTTGAAGAAGAAGAAGCGGCAGAAGGATCGGATATGGAGGTTAAAGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATTGACATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGCTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTTAGTGGCAGGCTTTATTTCGTTAATTTCGAGACTAGCAAGATTGAGGATTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAACAATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723871" ref_strand="+" ref_description="SGN-E723871 [FC22BB07]">
      <seq>ggcgaattggcggccaatcggccgaattccctggggatccgatgattagctcttttttgacaaaattctatatattcttcgccgatcgtgattttgtttattcatgacagttaaaaaattctatttttccacttaattgagtgttcaatttgaagaaaaagtggaggaggatccgatatggaggtgaagggaattgatgggaaattagaaaagagtgattccacttctgctgatgaaatttcacatttgtctatcgacattggaggctccctcatcaagattgtatacttttcaaccaacagtaagtgcagcacaaatgatgaggcaccaacgttatcaaaagaaagacaggaagttcccaatggagaccttaaccatcacattctcagtggcaggctttatttcattaaattcgagactagcaagattgaggactgcataaagtttttgtcttccaagaaacttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62956" stop="60534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62652" g_stop="62433" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="265" r_length="219" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62432" i_stop="61039" i_length="1394">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61038" g_stop="60834" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="470" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E723871" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62652" e_stop="62433"/>
          <exon e_start="61038" e_stop="60834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTCTTTTTTGAACAAAATTCTATATATTCTTCGCCGATCGTGATTTTGTTTATTCATGACAGTTAGAAAATTCTATTTTTCCACTTAATTGAGTGTTCAATTTGAAGAAGAAGTGGAGGAGGATCCGATATGGAGGTGAAGGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATCGACATTGGAGGTAATTTTTTGTTCGAATCGTACATTTCTGGGGTTTTTTTTTTGTTGGTGTGTGAGATCTTGAGATTCTTATTTGTTAAAGTGAAACGTGCATTTTTAATTTTAATGTGATTTTGGAGAGTTGTTTGTTTTCTGTTTCTTATTAGTTTGACGATAGAGTTTAAGGAAAAAGAAAAAGAAAAGATCTTTTTTTTTGTATTGAGACTCATAATTCAGTTATGTTAACTGAGGAACTAAGAAAGAGAAATTTAGAAACTTCTGGAATTGCTATGTGCTTGATGGTTTATACTGGACTACATGTTTCAATATGTGTTGCTCCAACTCTTCAAAAATATTATTGGGTTAGTGTTGGATGGAGTAGTGCATTTTTGGAGTATACGACACGGGTGTGGATTTTCTTTTTTGGAGAGTCTGAGCAATATAGGTTTCAATGAGGGTTAAAGGGGGATGAATGAGATGGCGGAGTAATTGATTCATAGAAATGAAAATGTGGAAAAAATGATATTCATATATGGCTGTATTGCACTAGTTCACTAGTTCTACTTAATTGAGTGATGATCCAACTTCCTTTTTTCATTTCGCAATCCTATGTAGTGATATATCATTGTATCATGTTTTTTTCTCTGAGCTCGAAAGGTTGAAGTTGTTCATTTTAATCTTAAATAAGAGGGAGTCTTGAGCGAAGAGGCGGACATTTGAATGGCAAAACATGGGCATATCCAACAGGAAGTGGTAAACGTGGTTGGACAAGTGTAAAAGAAGACTGGATTAAAACCATTTATATGAGATTGTCGACAATCGGAACGTATCAATCTTGAAGAAATGATTCCCTAGTTTGGAATAACAATTGTTGGAATTGACTGGTCAAAATTAACAAAAAGACTCTTGTTGGAATTGGTAGTTGTTCAAAGTCTAATCTAGCTGAAACCACTCTTTGAAAACACAGAAATATCATCAACTGAGAGTGATCTCCAGAAGTCAACCAGTTTCTTCTGTGCTACTTAACTTAAGCATTTTTGTAGATTATCAACTTTTAGATAGATGGTTTATGACCTCAAGATACATCTGAATGCGTCTTAGTGAAAATTCTTGTTTTTCTTTGCAACAGAACTTCTGTCTTAGTTTAAAATTGTCATTTCCTGCCCTACTTTGGAATTTGGAAGTCCTTCCGTTCCATAAAGGGATATAGAATCTCACTAATTTTTTCATAAGTGGAACAGAAATTAACTGTTTTACAATATATTGATAAGCATCTCCTATGTACACAGTCAGATATTAAAGAAGCTTTATGCAACTTGGCTAGCTTTAAAGATCCTCCTACTAACTACCTATTAAAGAATATTTTGAGGACCAAAATAGGAAAAATGCTAAATGAAAGGAACTTTTCTTTTGCAGGCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTCAGTGGCAGGCTTTATTTCATTAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAAAA</genome_strand>
        <mrna_strand>TAGCTCTTTTTTG-ACAAAATTCTATATATTCTTCGCCGATCGTGATTTTGTTTATTCATGACAGTTAAAAAATTCTATTTTTCCACTTAATTGAGTGTTCAATTTGAAGAAAAAGTGGAGGAGGATCCGATATGGAGGTGAAGGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATCGACATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTCAGTGGCAGGCTTTATTTCATTAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340375" ref_strand="+" ref_description="SGN-E340375 [cTOF-2-B20]">
      <seq>tgaagtactcagtagctcttttttgaacaaaattctatatattcttcgccgatcgtgattttgtttattcatgacagttagaaaattctatttttccacttaattgagtgttcaatttgaagaagaagtggaggaggatccgatatggaggtgaagggaattgatgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62964" stop="62194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62664" g_stop="62494" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E340375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62664" e_stop="62494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTACTCAGTAGCTCTTTTTTGAACAAAATTCTATATATTCTTCGCCGATCGTGATTTTGTTTATTCATGACAGTTAGAAAATTCTATTTTTCCACTTAATTGAGTGTTCAATTTGAAGAAGAAGTGGAGGAGGATCCGATATGGAGGTGAAGGGAATTGATGGGAAA</genome_strand>
        <mrna_strand>TGAAGTACTCAGTAGCTCTTTTTTGAACAAAATTCTATATATTCTTCGCCGATCGTGATTTTGTTTATTCATGACAGTTAGAAAATTCTATTTTTCCACTTAATTGAGTGTTCAATTTGAAGAAGAAGTGGAGGAGGATCCGATATGGAGGTGAAGGGAATTGATGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347394" ref_strand="+" ref_description="SGN-E347394 [cTOF-33-P14]">
      <seq>tattttcctcttcttcttgagtaaaataaaatattatcctatttgttttgtccatttccttcaaaagttactaaaatatgtatcaacaaaaccaggagtactaccattttccttgtttgtgttgcaaccctcatacttacattagaatggtacaaaatatgatcgagaggtgcttagtggttgggatggatagagatgaatgcattaagacactagctatacatgccagaatccgcccactcgtaacactaacagtgtggagagagcttataaaggagaacaaggacttctttcaagcatatttcacaaacatatcaacaccattaccctccttaggctttcaaagagaaccaagatttgggagaaggaaactatattattggcagtaattgaagaatgaagaacaaaatttctagccaggatgtaatatatttatgcgttttgaatcataatcttttttatttactagattctgaatatattgcatatatacatatttatatatatatcaaacaaatctttgtatgttttggagctcaaaatcgtactttaagaatgtatatgagttccaatataagaagggataatgcataaccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="69011" stop="67368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68711" g_stop="68563" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68562" i_stop="68380" i_length="183">
            <donor d_prob="0.423" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68379" g_stop="68274" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="255" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68273" i_stop="68101" i_length="173">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68100" g_stop="68020" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="336" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68019" i_stop="67930" i_length="90">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67929" g_stop="67656" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="610" r_length="274" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E347394" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68711" e_stop="68563"/>
          <exon e_start="68379" e_stop="68274"/>
          <exon e_start="68100" e_stop="68020"/>
          <exon e_start="67929" e_stop="67656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCCTCTTCTTCTTGAGTAAAATAAAATATTATCCTATTTGTTTTGTCCATTTCCTTCAAAAGTTACTAAAATATGTATCAACAAAACCAGGAGTACTACCATTTTCCTTGTTTGTGTTGCAACCCTCATACTTACATTAGAATGGTATGTGCATTTCGAAAGCAGAATCGAACCCAGAATTTTAGTCTGATAGATTTATTTTTTTAGGATTAACGAGTTATTTTATCTGTATACATGATCCACCCTACTTTTTAAATATGAGAATCAATATACTCATTTGCATGATTTTTCTAATCTTAGCTTATACTAATTATATTACTATGGCAGGTACAAAATATGATCGAGAGGTGCTTAGTGGTTGGGATGGATAGAGATGAATGCATTAAGACACTAGCTATACATGCCAGAATCCGCCCACTCGTAACACTAACAGGTCATTATTGATTAACTATAGTATATAATAAGATTAAGAAGCTAATAATAAGTTAGAAATTTTATCTTCGTCTCTGAATACAACGTATTTATTTTCTTTAGGATTTTTTTATTTGTTTATGGTTGGATTATGACCAACATATATATTCTTTGATGTTAATTTAAATTTTGCAGTGTGGAGAGAGCTTATAAAGGAGAACAAGGACTTCTTTCAAGCATATTTCACAAACATATCAACACCATTACCCTCCTTAGGTAATTAATTTGTATTATGAATTGCTTAATTAACATTAAATAATTAACTATATAGTATTAATTATTATGTTAACATTTTTAATTTGTTAGGCTTTCAAAGAGAACCAAGATTTGGGAGAAGGAAACTATATTATTGGCAGTAATTGAAGAATGAAGAACAAAATTTCTAGCCAGGATGTAATATATTTATGCGTTTTGAATCATAATCTTTTTTATTTACTAGATTCTGAATATATTGCATATATACATATTTATATATATATCAAACAAATCTTTGTATGTTTTGGAGCTCAAAATCGTACTTTAAGAATGTATATGAGTTCCAATATAAGAAGGGATAATGCATAACCAATTCATAAATTTA</genome_strand>
        <mrna_strand>TATTTTCCTCTTCTTCTTGAGTAAAATAAAATATTATCCTATTTGTTTTGTCCATTTCCTTCAAAAGTTACTAAAATATGTATCAACAAAACCAGGAGTACTACCATTTTCCTTGTTTGTGTTGCAACCCTCATACTTACATTAGAATG.......................................................................................................................................................................................GTACAAAATATGATCGAGAGGTGCTTAGTGGTTGGGATGGATAGAGATGAATGCATTAAGACACTAGCTATACATGCCAGAATCCGCCCACTCGTAACACTAACAG.............................................................................................................................................................................TGTGGAGAGAGCTTATAAAGGAGAACAAGGACTTCTTTCAAGCATATTTCACAAACATATCAACACCATTACCCTCCTTAG..........................................................................................GCTTTCAAAGAGAACCAAGATTTGGGAGAAGGAAACTATATTATTGGCAGTAATTGAAGAATGAAGAACAAAATTTCTAGCCAGGATGTAATATATTTATGCGTTTTGAATCATAATCTTTTTTATTTACTAGATTCTGAATATATTGCATATATACATATTTATATATATATCAAACAAATCTTTGTATGTTTTGGAGCTCAAAATCGTACTTTAAGAATGTATATGAGTTCCAATATAAGAAGGGATAATGCATAACCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318939" ref_strand="+" ref_description="SGN-E318939 [cTOB-11-J6]">
      <seq>aaaagtcctgcaaaatccataagaggagagcgtgattccagccatttttgcttttacaatccttcaatatcttgttttgtgggtcccaccccccacccccaacaacatttttgtcactattcttttttcaattttcatctttctgcagtttcttgatcaagatgggttcattttgttgaagaagttcaagttaaaaaagctatctttacacccctttttaagttattggttttgggtgaacttgctcagtatctgagtagattttccttggaaaatgtatagaggcaatggcaatggcactaacactcaacttccaattttcgtggatgcgaatggtttccagtatcctcctagtgcaccaaatcaacttcaattattcggaagcttgccacttggatcctctgctgatcctgtaaattattttgtaaatgagcatgctacgcctatgattcggcataatcgaggaagcgaagcatgtgtttccaggcagcaaaagcttcaattttccttgaatcataatttggttcatgatgacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73663" stop="77496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73963" g_stop="74115" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74116" i_stop="74195" i_length="80">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74196" g_stop="74276" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="235" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74277" i_stop="75547" i_length="1271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75548" g_stop="75698" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="386" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75699" i_stop="77043" i_length="1345">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77044" g_stop="77196" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="539" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E318939" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73963" e_stop="74115"/>
          <exon e_start="74196" e_stop="74276"/>
          <exon e_start="75548" e_stop="75698"/>
          <exon e_start="77044" e_stop="77196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTCCTGCAAAATCCAGAAG-GGAGAGCGTGATTCCAGCCATTTTTGCTTTTACAATCCTTCAATATCTTGTTTTGTGGGTCCCACCCCCCACCCCCAACAACATTTTTGTCACTATTCTTTTTTCAATTTTCATCTTTCTGCAGTTTCTTGTATGTAAGCATTCCCAAGATTGGATTTTTTTTGAAGAAAAATTGTGGGGTTTTGGTTTGACTTGCATAGGGATTTGCAGGATCAAGATGGGTTCATTTTGTTGAAGAAGTTCAAGTTAAAAAAGCTATCTTTACACCCCTTTTTAAGTTATTGGTTTTGGGTAAGCTTTATTTTTTAGTATTTGTTATTGCAGATTCAGATTCAGATGAAAAGCTTTATCCTTTGCTCGTGTTAGTATATAGTTCTAGGAAGATCAAGATTTGGTATGTAATTTGTGTTGTGGAGTTCTATATATCAGATTGATTGAATTTAGGAGTCAAAATCCCATTTTTTTTGTTTTATGGAATGGATTTCTTAGACTTTATTGTTTGATCAAAGTATTTTCTAGTTTCCTAAGTTTCTAGATGTATTGTAGATTTAGAGATAGTGTTTCCTCTTTGTGTGTTTAAGTTGGTCTGTTGTCTCTATGCTTTTACAGATTTGCAGGCTTATCTTTGCTTGAACTTTGGGAGAACTTCCTATGGTGACTTTACAATTGAAATTTGTATACCACATTGCATTTGTTATATTAATTTTTAAGTGTGGAGGAGTGACCTTCTAAATTTGTAGAGATAATGGAGTAGTTTTGTTTGGAACCAGAAAAAAGGTTGCTCGTTTCGACCAATCGTGTCCTGAAATTAGTAGCTTTGCCTAGACAAAGGAAAGATGGTATTTTTCTTTTCAACAATGGAAAGAAAAGGGCGGGCGGTGTGGGGGGTTGGATGTAGTAAGCTTTCCATCCAAGTTTGTTTTGGAATCCTTAGGTTTATTATGGTATTGTTATTTCCTTGCATTCGAGGTTCCATCAGAAAAATGATTGGTTTGATTTTGGATTTTGAACACCGCAACATTGTTTTCAGATTGTGTATCATTTTTATATAAAATGAAATACATAGATATTCTGGCAGATATGGATGGATTAGAAGGGGGTTTGGTTCTTCATCACCAGGAGGAGATGAATGGAGATTTGTATACAGTGAGTCTTATGGATCTAAATCTTGTAAAGGGTGAAGTGGAACTTTAAAGCTTCACACAGTTGTTTTTTCAAAGCAATAAAAGAGGAAACATCACAACTACTATGGTGGATGCACTTGTCGATCTGTCTTTGTGGTTAGTAGAAAATGATCAGAGCACATTATCGCGAGCCGTGAGGTGGCTTAAGATGACTCCTTTAATTTTTTAAGATAATATTTCTCAAACAACTTTATTTCTACAATTAGCCATGCATTTCAGTTTAAATAGAGAGTATGATGAGTAAATGTGGTTACTAAACTTTGATTGGTGTTAAATGACCTTTTTATTGCTTATATCCATGTCTTTTGATTATTGCTGTTGACCTTTGATCCAATAATTCTGGGTTTAAAAGGTGTATATCGTGTCCTTAATCTGCAGGTGAACTTGCTCAGTATCTGAGTAGATTTTCCTTGGAAAATGTATAGAGGCAATGGCAATGGCACTAACACTCAACTTCCAATTTTCGTGGATGCGAATGGTTTCCAGTATCCTCCTAGTGCACCAAATCAACTTCAATTATTCGGAAGCTGTGAGTTTCTCTTCTATTAACATATGTAAATTGGATTGTGAGCTGTTCAGTATTTGTATATCATTCTCAACAGCATGGCAAGTATATGTATCTGTTTTTTTTTTTTCGCTTTTCAATCTATTGAACACTTGCTGCTATATCTTTATTTGTTCACGAAGATGCTTCTAGCTGTAAAGCTCTGTAAAATTATTGTAAATGGGTTTTGAACATTGTTTATTGTTATCGATTCTATGAACTTTCTGAATCACTATAGCTATTGTGAACCTTCAATGGGCATACCAAGTTGCAGGTGTACAGTTAATAGTGGCCGACCAAATTTGATAGAACAGCATTGAATTTTGTTTCAGAATTCTTCTCTTATTTCCAGTGTTGCAGTTTAGCTACCTCTTGCTAAGCCTGTAGTCTAGATTTCGCTTACTATTAGGGGTCTTTCATGTACTTATCAGTACAAAAAGATGACGAAAATTTGAAACATATAAGCTAAGGGAACCTCAAATGCTCTTATATATTTATCAGCATTTCATGTTTTTTTTTAAAAAATTGAGTGACTTCATCTGTATTAACTATTTGGTAAGTCTTATCTTGTCTTTCTACTACTGATGCTGCAATTCTGACATTTCTCATGGGATCTTTTTAATCTTTTCGAAAAGGTCTCATGAACACCTTTTTGGTGTCTTTTAGAAGTGTATCTCAAGTTCTTCTTGGTATTTGTACTAAACCTTGGGTTGTGGTCATGAACACATTTCTCTTAGTTTTATCTTACAGCCATTATTGTGCTGTAATGTTGTATTTGTACTAACAAGCCTTGGGTTGTGCTCGGTAAGTCAAGATTTACAGGAAAGGCCAAAGGTATTAGCAGGCATATCTCAGCTATTCAATGTTTTAAGCAGGGTGGGTAAAAATGCGGGAAGAGGAACTGAAAATAGAGTTGAGTTTGTTGGGAAGTCTATGCCTTAAATATAGCTTTAGCCTAACTTCAATAATATGGTTTATGAATTGGAGTTAAAAGTTGCCCTGTATTAACTGACATAGCAAATACTGGAACATTTTGTGTACTATAAAAAAAATTGAGGAGCATACCAAGTTACCAACTCTTATTAGAAGAGGTAAACTTCATTATTATATTTTCACACCTAAGTTTATGCTCGAGGATATCAATAGTCTTTGGGATCTTGCAACAAAATTCTAGAGGCAAAGGCATCACTCAATTTCTAGTTTGATGTTTCCGTGAATTTGTTCTCGGCATGGTAGTCTTTCTTCACCACTAGTAAACTCATACTGATATGTAGTTTGCTATATAGAAGAAGTATTTACTATTTACAATGTGCTCTTTCTTTTGCTACAGTGCCACTTGGATCCTCTGCTGATCCTGTAAATTATTTTGTAAATGAGCATGCTACGCCTATGATTCGGCATAATCGAGGAAGCGAAGCAGGTGTTTCCAGGCAGCAAAAGCTTCAATTTTCCTTGAATCATAATTTGGTTCATGATGACACTG</genome_strand>
        <mrna_strand>AAAAGTCCTGCAAAATCCATAAGAGGAGAGCGTGATTCCAGCCATTTTTGCTTTTACAATCCTTCAATATCTTGTTTTGTGGGTCCCACCCCCCACCCCCAACAACATTTTTGTCACTATTCTTTTTTCAATTTTCATCTTTCTGCAGTTTCTT................................................................................GATCAAGATGGGTTCATTTTGTTGAAGAAGTTCAAGTTAAAAAAGCTATCTTTACACCCCTTTTTAAGTTATTGGTTTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTTGCTCAGTATCTGAGTAGATTTTCCTTGGAAAATGTATAGAGGCAATGGCAATGGCACTAACACTCAACTTCCAATTTTCGTGGATGCGAATGGTTTCCAGTATCCTCCTAGTGCACCAAATCAACTTCAATTATTCGGAAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACTTGGATCCTCTGCTGATCCTGTAAATTATTTTGTAAATGAGCATGCTACGCCTATGATTCGGCATAATCGAGGAAGCGAAGCATGTGTTTCCAGGCAGCAAAAGCTTCAATTTTCCTTGAATCATAATTTGGTTCATGATGACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330479" ref_strand="+" ref_description="SGN-E330479 [cTOD-4-D20]">
      <seq>ccccccacccccaacaacatttttgtcactattcttttttcaattttcatctttctgcagtttcttgtatgtaagcattcccaagattggattttttttgaagaaaaattgtggggttttggtttgacttgcatagggatttgcaggatcaagatgggttcattttgttgaagaagttcaagttaaaaaagctatctttacacccctttttaagttattggttttgggtgaacttgctcagtatctgagtagattttccttggaaaatgtatagaggcaatggcaatggcactaacactcaacttccaattttcgtggatgcgaatggtttccagtatcctcctagtgcaccaaatcaacttcaattattcggaagctgtgagtttctcttctattaacatatgtaaattggattgtgagctgttcagtatttgtatatcattctcaacagcatggcaagtatatgtatctgtttttttttttttcgcttttcaatctattgaacacttgctgctatatctttatttgttcacgaagatgcttctagctgtaaagctctgtaaaattattgtaaatgggttttgaacattgtttattgttatcgattctatgaactttctgaatcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73750" stop="76248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74050" g_stop="74276" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74277" i_stop="75547" i_length="1271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75548" g_stop="75948" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="629" r_length="402" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E330479" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74050" e_stop="74276"/>
          <exon e_start="75548" e_stop="75948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCACCCCCAACAACATTTTTGTCACTATTCTTTTTTCAATTTTCATCTTTCTGCAGTTTCTTGTATGTAAGCATTCCCAAGATTGGATTTTTTTTGAAGAAAAATTGTGGGGTTTTGGTTTGACTTGCATAGGGATTTGCAGGATCAAGATGGGTTCATTTTGTTGAAGAAGTTCAAGTTAAAAAAGCTATCTTTACACCCCTTTTTAAGTTATTGGTTTTGGGTAAGCTTTATTTTTTAGTATTTGTTATTGCAGATTCAGATTCAGATGAAAAGCTTTATCCTTTGCTCGTGTTAGTATATAGTTCTAGGAAGATCAAGATTTGGTATGTAATTTGTGTTGTGGAGTTCTATATATCAGATTGATTGAATTTAGGAGTCAAAATCCCATTTTTTTTGTTTTATGGAATGGATTTCTTAGACTTTATTGTTTGATCAAAGTATTTTCTAGTTTCCTAAGTTTCTAGATGTATTGTAGATTTAGAGATAGTGTTTCCTCTTTGTGTGTTTAAGTTGGTCTGTTGTCTCTATGCTTTTACAGATTTGCAGGCTTATCTTTGCTTGAACTTTGGGAGAACTTCCTATGGTGACTTTACAATTGAAATTTGTATACCACATTGCATTTGTTATATTAATTTTTAAGTGTGGAGGAGTGACCTTCTAAATTTGTAGAGATAATGGAGTAGTTTTGTTTGGAACCAGAAAAAAGGTTGCTCGTTTCGACCAATCGTGTCCTGAAATTAGTAGCTTTGCCTAGACAAAGGAAAGATGGTATTTTTCTTTTCAACAATGGAAAGAAAAGGGCGGGCGGTGTGGGGGGTTGGATGTAGTAAGCTTTCCATCCAAGTTTGTTTTGGAATCCTTAGGTTTATTATGGTATTGTTATTTCCTTGCATTCGAGGTTCCATCAGAAAAATGATTGGTTTGATTTTGGATTTTGAACACCGCAACATTGTTTTCAGATTGTGTATCATTTTTATATAAAATGAAATACATAGATATTCTGGCAGATATGGATGGATTAGAAGGGGGTTTGGTTCTTCATCACCAGGAGGAGATGAATGGAGATTTGTATACAGTGAGTCTTATGGATCTAAATCTTGTAAAGGGTGAAGTGGAACTTTAAAGCTTCACACAGTTGTTTTTTCAAAGCAATAAAAGAGGAAACATCACAACTACTATGGTGGATGCACTTGTCGATCTGTCTTTGTGGTTAGTAGAAAATGATCAGAGCACATTATCGCGAGCCGTGAGGTGGCTTAAGATGACTCCTTTAATTTTTTAAGATAATATTTCTCAAACAACTTTATTTCTACAATTAGCCATGCATTTCAGTTTAAATAGAGAGTATGATGAGTAAATGTGGTTACTAAACTTTGATTGGTGTTAAATGACCTTTTTATTGCTTATATCCATGTCTTTTGATTATTGCTGTTGACCTTTGATCCAATAATTCTGGGTTTAAAAGGTGTATATCGTGTCCTTAATCTGCAGGTGAACTTGCTCAGTATCTGAGTAGATTTTCCTTGGAAAATGTATAGAGGCAATGGCAATGGCACTAACACTCAACTTCCAATTTTCGTGGATGCGAATGGTTTCCAGTATCCTCCTAGTGCACCAAATCAACTTCAATTATTCGGAAGCTGTGAGTTTCTCTTCTATTAACATATGTAAATTGGATTGTGAGCTGTTCAGTATTTGTATATCATTCTCAACAGCATGGCAAGTATATGTATCTG-TTTTTTTTTTTTCGCTTTTCAATCTATTGAACACTTGCTGCTATATCTTTATTTGTTCACGAAGATGCTTCTAGCTGTAAAGCTCTGTAAAATTATTGTAAATGGGTTTTGAACATTGTTTATTGTTATCGATTCTATGAACTTTCTGAATCACTA</genome_strand>
        <mrna_strand>CCCCCCACCCCCAACAACATTTTTGTCACTATTCTTTTTTCAATTTTCATCTTTCTGCAGTTTCTTGTATGTAAGCATTCCCAAGATTGGATTTTTTTTGAAGAAAAATTGTGGGGTTTTGGTTTGACTTGCATAGGGATTTGCAGGATCAAGATGGGTTCATTTTGTTGAAGAAGTTCAAGTTAAAAAAGCTATCTTTACACCCCTTTTTAAGTTATTGGTTTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTTGCTCAGTATCTGAGTAGATTTTCCTTGGAAAATGTATAGAGGCAATGGCAATGGCACTAACACTCAACTTCCAATTTTCGTGGATGCGAATGGTTTCCAGTATCCTCCTAGTGCACCAAATCAACTTCAATTATTCGGAAGCTGTGAGTTTCTCTTCTATTAACATATGTAAATTGGATTGTGAGCTGTTCAGTATTTGTATATCATTCTCAACAGCATGGCAAGTATATGTATCTGTTTTTTTTTTTTTCGCTTTTCAATCTATTGAACACTTGCTGCTATATCTTTATTTGTTCACGAAGATGCTTCTAGCTGTAAAGCTCTGTAAAATTATTGTAAATGGGTTTTGAACATTGTTTATTGTTATCGATTCTATGAACTTTCTGAATCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200104" ref_strand="+" ref_description="SGN-E200104 [cLEC-8-O6]">
      <seq>attcccaagattggattttttttgaagaaaaattgtggggttttggtttgacttgcatagggatttgcaggatcaagatgggttcattttgttgaagaagttcaagttaaaaaagctatctttacacccctttttaagttattggttttgggtgaacttgctcagtatctgagtagattttccttggaaaatgtatagaggcaatggcaatggcactaacactcaacttccaattttcgtggatgcgaatggtttccagtatcctcctagtgcaccaaatcaacttcaattattcggaagcttgccacttggatcctctgctgatcctgtaaattattttgtaaatgagcatgctacgcctatgattcggcataatcgaggaagcgaagcaggtgtttccaggcagcaaaagcttcaattttccttgaatcataatttggttcatgatgacactgaacggccagcaaatgttcctgcccaaaatcctgtatctactggtttaaagctatcatatgatgacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73826" stop="77565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74126" g_stop="74276" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74277" i_stop="75547" i_length="1271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75548" g_stop="75698" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="302" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75699" i_stop="77043" i_length="1345">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77044" g_stop="77265" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="524" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E200104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74126" e_stop="74276"/>
          <exon e_start="75548" e_stop="75698"/>
          <exon e_start="77044" e_stop="77265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCCAAGATTGGATTTTTTTTGAAGAAAAATTGTGGGGTTTTGGTTTGACTTGCATAGGGATTTGCAGGATCAAGATGGGTTCATTTTGTTGAAGAAGTTCAAGTTAAAAAAGCTATCTTTACACCCCTTTTTAAGTTATTGGTTTTGGGTAAGCTTTATTTTTTAGTATTTGTTATTGCAGATTCAGATTCAGATGAAAAGCTTTATCCTTTGCTCGTGTTAGTATATAGTTCTAGGAAGATCAAGATTTGGTATGTAATTTGTGTTGTGGAGTTCTATATATCAGATTGATTGAATTTAGGAGTCAAAATCCCATTTTTTTTGTTTTATGGAATGGATTTCTTAGACTTTATTGTTTGATCAAAGTATTTTCTAGTTTCCTAAGTTTCTAGATGTATTGTAGATTTAGAGATAGTGTTTCCTCTTTGTGTGTTTAAGTTGGTCTGTTGTCTCTATGCTTTTACAGATTTGCAGGCTTATCTTTGCTTGAACTTTGGGAGAACTTCCTATGGTGACTTTACAATTGAAATTTGTATACCACATTGCATTTGTTATATTAATTTTTAAGTGTGGAGGAGTGACCTTCTAAATTTGTAGAGATAATGGAGTAGTTTTGTTTGGAACCAGAAAAAAGGTTGCTCGTTTCGACCAATCGTGTCCTGAAATTAGTAGCTTTGCCTAGACAAAGGAAAGATGGTATTTTTCTTTTCAACAATGGAAAGAAAAGGGCGGGCGGTGTGGGGGGTTGGATGTAGTAAGCTTTCCATCCAAGTTTGTTTTGGAATCCTTAGGTTTATTATGGTATTGTTATTTCCTTGCATTCGAGGTTCCATCAGAAAAATGATTGGTTTGATTTTGGATTTTGAACACCGCAACATTGTTTTCAGATTGTGTATCATTTTTATATAAAATGAAATACATAGATATTCTGGCAGATATGGATGGATTAGAAGGGGGTTTGGTTCTTCATCACCAGGAGGAGATGAATGGAGATTTGTATACAGTGAGTCTTATGGATCTAAATCTTGTAAAGGGTGAAGTGGAACTTTAAAGCTTCACACAGTTGTTTTTTCAAAGCAATAAAAGAGGAAACATCACAACTACTATGGTGGATGCACTTGTCGATCTGTCTTTGTGGTTAGTAGAAAATGATCAGAGCACATTATCGCGAGCCGTGAGGTGGCTTAAGATGACTCCTTTAATTTTTTAAGATAATATTTCTCAAACAACTTTATTTCTACAATTAGCCATGCATTTCAGTTTAAATAGAGAGTATGATGAGTAAATGTGGTTACTAAACTTTGATTGGTGTTAAATGACCTTTTTATTGCTTATATCCATGTCTTTTGATTATTGCTGTTGACCTTTGATCCAATAATTCTGGGTTTAAAAGGTGTATATCGTGTCCTTAATCTGCAGGTGAACTTGCTCAGTATCTGAGTAGATTTTCCTTGGAAAATGTATAGAGGCAATGGCAATGGCACTAACACTCAACTTCCAATTTTCGTGGATGCGAATGGTTTCCAGTATCCTCCTAGTGCACCAAATCAACTTCAATTATTCGGAAGCTGTGAGTTTCTCTTCTATTAACATATGTAAATTGGATTGTGAGCTGTTCAGTATTTGTATATCATTCTCAACAGCATGGCAAGTATATGTATCTGTTTTTTTTTTTTCGCTTTTCAATCTATTGAACACTTGCTGCTATATCTTTATTTGTTCACGAAGATGCTTCTAGCTGTAAAGCTCTGTAAAATTATTGTAAATGGGTTTTGAACATTGTTTATTGTTATCGATTCTATGAACTTTCTGAATCACTATAGCTATTGTGAACCTTCAATGGGCATACCAAGTTGCAGGTGTACAGTTAATAGTGGCCGACCAAATTTGATAGAACAGCATTGAATTTTGTTTCAGAATTCTTCTCTTATTTCCAGTGTTGCAGTTTAGCTACCTCTTGCTAAGCCTGTAGTCTAGATTTCGCTTACTATTAGGGGTCTTTCATGTACTTATCAGTACAAAAAGATGACGAAAATTTGAAACATATAAGCTAAGGGAACCTCAAATGCTCTTATATATTTATCAGCATTTCATGTTTTTTTTTAAAAAATTGAGTGACTTCATCTGTATTAACTATTTGGTAAGTCTTATCTTGTCTTTCTACTACTGATGCTGCAATTCTGACATTTCTCATGGGATCTTTTTAATCTTTTCGAAAAGGTCTCATGAACACCTTTTTGGTGTCTTTTAGAAGTGTATCTCAAGTTCTTCTTGGTATTTGTACTAAACCTTGGGTTGTGGTCATGAACACATTTCTCTTAGTTTTATCTTACAGCCATTATTGTGCTGTAATGTTGTATTTGTACTAACAAGCCTTGGGTTGTGCTCGGTAAGTCAAGATTTACAGGAAAGGCCAAAGGTATTAGCAGGCATATCTCAGCTATTCAATGTTTTAAGCAGGGTGGGTAAAAATGCGGGAAGAGGAACTGAAAATAGAGTTGAGTTTGTTGGGAAGTCTATGCCTTAAATATAGCTTTAGCCTAACTTCAATAATATGGTTTATGAATTGGAGTTAAAAGTTGCCCTGTATTAACTGACATAGCAAATACTGGAACATTTTGTGTACTATAAAAAAAATTGAGGAGCATACCAAGTTACCAACTCTTATTAGAAGAGGTAAACTTCATTATTATATTTTCACACCTAAGTTTATGCTCGAGGATATCAATAGTCTTTGGGATCTTGCAACAAAATTCTAGAGGCAAAGGCATCACTCAATTTCTAGTTTGATGTTTCCGTGAATTTGTTCTCGGCATGGTAGTCTTTCTTCACCACTAGTAAACTCATACTGATATGTAGTTTGCTATATAGAAGAAGTATTTACTATTTACAATGTGCTCTTTCTTTTGCTACAGTGCCACTTGGATCCTCTGCTGATCCTGTAAATTATTTTGTAAATGAGCATGCTACGCCTATGATTCGGCATAATCGAGGAAGCGAAGCAGGTGTTTCCAGGCAGCAAAAGCTTCAATTTTCCTTGAATCATAATTTGGTTCATGATGACACTGAACGGCCAGCAAATGTTCCTGCCCAAAATCCTGTATCTACTGGTTTAAAGCTATCATATGATGACGATG</genome_strand>
        <mrna_strand>ATTCCCAAGATTGGATTTTTTTTGAAGAAAAATTGTGGGGTTTTGGTTTGACTTGCATAGGGATTTGCAGGATCAAGATGGGTTCATTTTGTTGAAGAAGTTCAAGTTAAAAAAGCTATCTTTACACCCCTTTTTAAGTTATTGGTTTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTTGCTCAGTATCTGAGTAGATTTTCCTTGGAAAATGTATAGAGGCAATGGCAATGGCACTAACACTCAACTTCCAATTTTCGTGGATGCGAATGGTTTCCAGTATCCTCCTAGTGCACCAAATCAACTTCAATTATTCGGAAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACTTGGATCCTCTGCTGATCCTGTAAATTATTTTGTAAATGAGCATGCTACGCCTATGATTCGGCATAATCGAGGAAGCGAAGCAGGTGTTTCCAGGCAGCAAAAGCTTCAATTTTCCTTGAATCATAATTTGGTTCATGATGACACTGAACGGCCAGCAAATGTTCCTGCCCAAAATCCTGTATCTACTGGTTTAAAGCTATCATATGATGACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341100" ref_strand="+" ref_description="SGN-E341100 [cTOE-22-K14]">
      <seq>tttgaagaaaaattgtggggttttggtttgacttgcatagggatttgcaggatcaagatgggttcattttgttgaagaagttcaagttaaaaaagctatctttacacccctttttaagttattggttttgggtgaacttgctcagtatctgagtagattttccttggaaaatgtatagaggcaatggcaatggcactaacactcaacttccaattttcgtggatgcgaatggtttccagtatcctcctagtgcaccaaatcaacttcaattattcggaagcttgccacttggatcctctgctgatcctgtaaattattttgtaaatgagcatgctacgcctatgattcggcataatcgaggaagcgaagcaggtgtttccaggcagcaaaagcttcaattttccttgaatcataatttggttcatgatgacactgaacggccagcaaatgttcctgcccaaaatcctgtatctactggtttaaagctatcatatgatgacgatgaacccaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73846" stop="77575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74146" g_stop="74276" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74277" i_stop="75547" i_length="1271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75548" g_stop="75698" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="282" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75699" i_stop="77043" i_length="1345">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77044" g_stop="77275" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="514" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E341100" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74146" e_stop="74276"/>
          <exon e_start="75548" e_stop="75698"/>
          <exon e_start="77044" e_stop="77275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGAAAAATTGTGGGGTTTTGGTTTGACTTGCATAGGGATTTGCAGGATCAAGATGGGTTCATTTTGTTGAAGAAGTTCAAGTTAAAAAAGCTATCTTTACACCCCTTTTTAAGTTATTGGTTTTGGGTAAGCTTTATTTTTTAGTATTTGTTATTGCAGATTCAGATTCAGATGAAAAGCTTTATCCTTTGCTCGTGTTAGTATATAGTTCTAGGAAGATCAAGATTTGGTATGTAATTTGTGTTGTGGAGTTCTATATATCAGATTGATTGAATTTAGGAGTCAAAATCCCATTTTTTTTGTTTTATGGAATGGATTTCTTAGACTTTATTGTTTGATCAAAGTATTTTCTAGTTTCCTAAGTTTCTAGATGTATTGTAGATTTAGAGATAGTGTTTCCTCTTTGTGTGTTTAAGTTGGTCTGTTGTCTCTATGCTTTTACAGATTTGCAGGCTTATCTTTGCTTGAACTTTGGGAGAACTTCCTATGGTGACTTTACAATTGAAATTTGTATACCACATTGCATTTGTTATATTAATTTTTAAGTGTGGAGGAGTGACCTTCTAAATTTGTAGAGATAATGGAGTAGTTTTGTTTGGAACCAGAAAAAAGGTTGCTCGTTTCGACCAATCGTGTCCTGAAATTAGTAGCTTTGCCTAGACAAAGGAAAGATGGTATTTTTCTTTTCAACAATGGAAAGAAAAGGGCGGGCGGTGTGGGGGGTTGGATGTAGTAAGCTTTCCATCCAAGTTTGTTTTGGAATCCTTAGGTTTATTATGGTATTGTTATTTCCTTGCATTCGAGGTTCCATCAGAAAAATGATTGGTTTGATTTTGGATTTTGAACACCGCAACATTGTTTTCAGATTGTGTATCATTTTTATATAAAATGAAATACATAGATATTCTGGCAGATATGGATGGATTAGAAGGGGGTTTGGTTCTTCATCACCAGGAGGAGATGAATGGAGATTTGTATACAGTGAGTCTTATGGATCTAAATCTTGTAAAGGGTGAAGTGGAACTTTAAAGCTTCACACAGTTGTTTTTTCAAAGCAATAAAAGAGGAAACATCACAACTACTATGGTGGATGCACTTGTCGATCTGTCTTTGTGGTTAGTAGAAAATGATCAGAGCACATTATCGCGAGCCGTGAGGTGGCTTAAGATGACTCCTTTAATTTTTTAAGATAATATTTCTCAAACAACTTTATTTCTACAATTAGCCATGCATTTCAGTTTAAATAGAGAGTATGATGAGTAAATGTGGTTACTAAACTTTGATTGGTGTTAAATGACCTTTTTATTGCTTATATCCATGTCTTTTGATTATTGCTGTTGACCTTTGATCCAATAATTCTGGGTTTAAAAGGTGTATATCGTGTCCTTAATCTGCAGGTGAACTTGCTCAGTATCTGAGTAGATTTTCCTTGGAAAATGTATAGAGGCAATGGCAATGGCACTAACACTCAACTTCCAATTTTCGTGGATGCGAATGGTTTCCAGTATCCTCCTAGTGCACCAAATCAACTTCAATTATTCGGAAGCTGTGAGTTTCTCTTCTATTAACATATGTAAATTGGATTGTGAGCTGTTCAGTATTTGTATATCATTCTCAACAGCATGGCAAGTATATGTATCTGTTTTTTTTTTTTCGCTTTTCAATCTATTGAACACTTGCTGCTATATCTTTATTTGTTCACGAAGATGCTTCTAGCTGTAAAGCTCTGTAAAATTATTGTAAATGGGTTTTGAACATTGTTTATTGTTATCGATTCTATGAACTTTCTGAATCACTATAGCTATTGTGAACCTTCAATGGGCATACCAAGTTGCAGGTGTACAGTTAATAGTGGCCGACCAAATTTGATAGAACAGCATTGAATTTTGTTTCAGAATTCTTCTCTTATTTCCAGTGTTGCAGTTTAGCTACCTCTTGCTAAGCCTGTAGTCTAGATTTCGCTTACTATTAGGGGTCTTTCATGTACTTATCAGTACAAAAAGATGACGAAAATTTGAAACATATAAGCTAAGGGAACCTCAAATGCTCTTATATATTTATCAGCATTTCATGTTTTTTTTTAAAAAATTGAGTGACTTCATCTGTATTAACTATTTGGTAAGTCTTATCTTGTCTTTCTACTACTGATGCTGCAATTCTGACATTTCTCATGGGATCTTTTTAATCTTTTCGAAAAGGTCTCATGAACACCTTTTTGGTGTCTTTTAGAAGTGTATCTCAAGTTCTTCTTGGTATTTGTACTAAACCTTGGGTTGTGGTCATGAACACATTTCTCTTAGTTTTATCTTACAGCCATTATTGTGCTGTAATGTTGTATTTGTACTAACAAGCCTTGGGTTGTGCTCGGTAAGTCAAGATTTACAGGAAAGGCCAAAGGTATTAGCAGGCATATCTCAGCTATTCAATGTTTTAAGCAGGGTGGGTAAAAATGCGGGAAGAGGAACTGAAAATAGAGTTGAGTTTGTTGGGAAGTCTATGCCTTAAATATAGCTTTAGCCTAACTTCAATAATATGGTTTATGAATTGGAGTTAAAAGTTGCCCTGTATTAACTGACATAGCAAATACTGGAACATTTTGTGTACTATAAAAAAAATTGAGGAGCATACCAAGTTACCAACTCTTATTAGAAGAGGTAAACTTCATTATTATATTTTCACACCTAAGTTTATGCTCGAGGATATCAATAGTCTTTGGGATCTTGCAACAAAATTCTAGAGGCAAAGGCATCACTCAATTTCTAGTTTGATGTTTCCGTGAATTTGTTCTCGGCATGGTAGTCTTTCTTCACCACTAGTAAACTCATACTGATATGTAGTTTGCTATATAGAAGAAGTATTTACTATTTACAATGTGCTCTTTCTTTTGCTACAGTGCCACTTGGATCCTCTGCTGATCCTGTAAATTATTTTGTAAATGAGCATGCTACGCCTATGATTCGGCATAATCGAGGAAGCGAAGCAGGTGTTTCCAGGCAGCAAAAGCTTCAATTTTCCTTGAATCATAATTTGGTTCATGATGACACTGAACGGCCAGCAAATGTTCCTGCCCAAAATCCTGTATCTACTGGTTTAAAGCTATCATATGATGACGATGAACCCAACTC</genome_strand>
        <mrna_strand>TTTGAAGAAAAATTGTGGGGTTTTGGTTTGACTTGCATAGGGATTTGCAGGATCAAGATGGGTTCATTTTGTTGAAGAAGTTCAAGTTAAAAAAGCTATCTTTACACCCCTTTTTAAGTTATTGGTTTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTTGCTCAGTATCTGAGTAGATTTTCCTTGGAAAATGTATAGAGGCAATGGCAATGGCACTAACACTCAACTTCCAATTTTCGTGGATGCGAATGGTTTCCAGTATCCTCCTAGTGCACCAAATCAACTTCAATTATTCGGAAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACTTGGATCCTCTGCTGATCCTGTAAATTATTTTGTAAATGAGCATGCTACGCCTATGATTCGGCATAATCGAGGAAGCGAAGCAGGTGTTTCCAGGCAGCAAAAGCTTCAATTTTCCTTGAATCATAATTTGGTTCATGATGACACTGAACGGCCAGCAAATGTTCCTGCCCAAAATCCTGTATCTACTGGTTTAAAGCTATCATATGATGACGATGAACCCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462109" ref_strand="+" ref_description="SGN-E462109 [cPRO-10-L11]">
      <seq>agcagagacatatggcttcgttactgagtgcagtcgagaagaatgttggcactaagttgcaagagaaggatattgagttagagaacataaatcgaaagaacagagaactagttgaacggatgaagcaagttacagctgaggcgcaaaattggtgttacagagccaagtgtaacgaatctttagtcaacacattaaaaacgaaccttcagcaagcgatgcaatctgctgaacaaggaaaagaagggatgggagacaatgagctagatgatgctgcatcctacattgatccaaacaataggctcagcaatatccctagtggttctggtaagtgtacatcgacgaaaaaggggattatctgcaaggtatgcaaattaaaggaggtatccgtcttattgatgccttgtagacacttgtgtttgtgtaaagattgtgaaggattagttagtgtatgtcctatctgccagttgatgacaactgctagtgttgaagtgttcttgtcttgaaatatgaacaaaaataagactaaggcacaaaaaataatctcatacagattttagataattgttgtggatttattgtatagaagcaacttcttgaaattggagtttaactgtcatggttcttcttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="77807" stop="79006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78107" g_stop="78706" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="640"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E462109" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78107" e_stop="78706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAGACATATGGCTTCGTTACTGAGTGCAGTCGAGAAGAATGTTGGCACTAAGTTGCAAGAGAAGGATATTGAGTTAGAGAACATAAATCAGAAGAACAGAGAACTAGTTGAACGGATGAAGCAAGTTACAGCTGAGGCGCAAAATTGGTGTTACAGAGCCAAGTGTAACGAATCTTTAGTCAACACTTTAAAAACGAACCTTCAGCAAGCGATGCAATCTGCTGAACAAGGAAAAGAAGGGATGGGAGACAATGAGCTAGATGATGCTGCATCCTACATTGATCGAAACAATAGGCTCAGCAATATTCCTAGTGGTTCTGGTAAGTGTGCATCGACGAAAAAAGGCATTATCTGCAAGGTATGCAAATTAAAGGAGGTATGCATCTTATTGATGCCTTGTAGACACTTGTGTTTGTGTAAAGATTGTGAAGGATTAGTTAGTGTATGTCCTATCTGCCAGTTGATGACAACTGCTAGTGTTGAAGTGTTCTTGTCTTGAAATATGAACAGAAATAAGACTAAGGCACAAGAAATAATCTCATACACATTTTAGATAATTGTTGTGGATTTAATGTACAGAAGCAACTTCTTTAACT</genome_strand>
        <mrna_strand>AGCAGAGACATATGGCTTCGTTACTGAGTGCAGTCGAGAAGAATGTTGGCACTAAGTTGCAAGAGAAGGATATTGAGTTAGAGAACATAAATCGAAAGAACAGAGAACTAGTTGAACGGATGAAGCAAGTTACAGCTGAGGCGCAAAATTGGTGTTACAGAGCCAAGTGTAACGAATCTTTAGTCAACACATTAAAAACGAACCTTCAGCAAGCGATGCAATCTGCTGAACAAGGAAAAGAAGGGATGGGAGACAATGAGCTAGATGATGCTGCATCCTACATTGATCCAAACAATAGGCTCAGCAATATCCCTAGTGGTTCTGGTAAGTGTACATCGACGAAAAAGGGGATTATCTGCAAGGTATGCAAATTAAAGGAGGTATCCGTCTTATTGATGCCTTGTAGACACTTGTGTTTGTGTAAAGATTGTGAAGGATTAGTTAGTGTATGTCCTATCTGCCAGTTGATGACAACTGCTAGTGTTGAAGTGTTCTTGTCTTGAAATATGAACAAAAATAAGACTAAGGCACAAAAAATAATCTCATACAGATTTTAGATAATTGTTGTGGATTTATTGTATAGAAGCAACTTCTTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430590" ref_strand="+" ref_description="SGN-E430590 [STM-53-N4]">
      <seq>agcagagacatatggcttcgttactgagtgcagtcgagaagaatgttggcactaagttgcaagagaaggatattgagttagagaacataaatcgaaagaacagagaactagttgaacggatgaagcaagttacagctgaggcgcaaaattggtgttacagagccaagtgtaacgaatctttagtcaacacattaaaaacgaaccttcagcaagcgatgcaatctgctgaacaaggaaaagaagggatgggagacaatgagctagatgatgctgcatcctacattgatccaaacaataggctcagcaatatccctagtggttctgggaagtgtacatcgacgaaaaaggggattatctgcaaggtatgcaaattaaagggaggtatcccgtctattgatgccttgtagacacttgtgttctgtgtaaagatttgtgaaggatagntagtgtatgtcctatctgccagttgatgacaactgctagtggtgaagtgttcttggtcttgaatatgaacaaaataagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="77807" stop="78930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78107" g_stop="78630" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E430590" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78107" e_stop="78630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAGACATATGGCTTCGTTACTGAGTGCAGTCGAGAAGAATGTTGGCACTAAGTTGCAAGAGAAGGATATTGAGTTAGAGAACATAAATCAGAAGAACAGAGAACTAGTTGAACGGATGAAGCAAGTTACAGCTGAGGCGCAAAATTGGTGTTACAGAGCCAAGTGTAACGAATCTTTAGTCAACACTTTAAAAACGAACCTTCAGCAAGCGATGCAATCTGCTGAACAAGGAAAAGAAGGGATGGGAGACAATGAGCTAGATGATGCTGCATCCTACATTGATCGAAACAATAGGCTCAGCAATATTCCTAGTGGTTCTGGTAAGTGTGCATCGACGAAAAAAGGCATTATCTGCAAGGTATGCAAATTAAA-GGAGGTATGCATCTTATTGATGCCTTGTAGACACTTGTGTT-TGTGTAAAGA-TTGTGAAGGATTAGTTAGTGTATGTCCTATCTGCCAGTTGATGACAACTGCTAGTGTTGAAGTGTTCTT-GTCTTGAAATATGAACAGAAATAAGACT</genome_strand>
        <mrna_strand>AGCAGAGACATATGGCTTCGTTACTGAGTGCAGTCGAGAAGAATGTTGGCACTAAGTTGCAAGAGAAGGATATTGAGTTAGAGAACATAAATCGAAAGAACAGAGAACTAGTTGAACGGATGAAGCAAGTTACAGCTGAGGCGCAAAATTGGTGTTACAGAGCCAAGTGTAACGAATCTTTAGTCAACACATTAAAAACGAACCTTCAGCAAGCGATGCAATCTGCTGAACAAGGAAAAGAAGGGATGGGAGACAATGAGCTAGATGATGCTGCATCCTACATTGATCCAAACAATAGGCTCAGCAATATCCCTAGTGGTTCTGGGAAGTGTACATCGACGAAAAAGGGGATTATCTGCAAGGTATGCAAATTAAAGGGAGGTATCCCGTCTATTGATGCCTTGTAGACACTTGTGTTCTGTGTAAAGATTTGTGAAGGA-TAGNTAGTGTATGTCCTATCTGCCAGTTGATGACAACTGCTAGTGGTGAAGTGTTCTTGGTCTTG-AATATGAACA-AAATAAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430653" ref_strand="+" ref_description="SGN-E430653 [STM-54-C15]">
      <seq>ggaagaaccatgactgacaaactccaatttcaagaagttgcttctatacaataaatccgcaacaattatcttaaatctgtatgagattattttttgtgccttagtcttatttttgttcatatttcaagacaagaacacttcaacactagcagttgtcttcaactggcagataggacatacactaactaatccttcacaatctttacacaaacacaagtgtctacaaggcatcaataagacggatacctcctttaatttgcataccttgcagataatcccctttttcgtcgatgtacacttaccagaaccactagggatattgctgagcctattgtttggatcaatgtaggatgcagcatcatctagctcattgtctcccatcccttcttttccttgttcagcagattgcatcgcttgctgaaggttcgtttttaatgtgttgactaaagattcgttacacttggctctgtaacaccaattttgcgcctcagctgtaacttgcttcatccgttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="79006" stop="77917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78704" g_stop="78217" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="516" r_length="488" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E430653" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78704" e_stop="78217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAAGTTGCTTCTGTACATTAAATCCACAACAATTATCTAAAATGTGTATGAGATTATTTCTTGTGCCTTAGTCTTATTTCTGTTCATATTTCAAGACAAGAACACTTCAACACTAGCAGTTGTCATCAACTGGCAGATAGGACATACACTAACTAATCCTTCACAATCTTTACACAAACACAAGTGTCTACAAGGCATCAATAAGATGCATACCTCCTTTAATTTGCATACCTTGCAGATAATGCCTTTTTTCGTCGATGCACACTTACCAGAACCACTAGGAATATTGCTGAGCCTATTGTTTCGATCAATGTAGGATGCAGCATCATCTAGCTCATTGTCTCCCATCCCTTCTTTTCCTTGTTCAGCAGATTGCATCGCTTGCTGAAGGTTCGTTTTTAAAGTGTTGACTAAAGATTCGTTACACTTGGCTCTGTAACACCAATTTTGCGCCTCAGCTGTAACTTGCTTCATCCGTTCAAC</genome_strand>
        <mrna_strand>TTCAAGAAGTTGCTTCTATACAATAAATCCGCAACAATTATCTTAAATCTGTATGAGATTATTTTTTGTGCCTTAGTCTTATTTTTGTTCATATTTCAAGACAAGAACACTTCAACACTAGCAGTTGTCTTCAACTGGCAGATAGGACATACACTAACTAATCCTTCACAATCTTTACACAAACACAAGTGTCTACAAGGCATCAATAAGACGGATACCTCCTTTAATTTGCATACCTTGCAGATAATCCCCTTTTTCGTCGATGTACACTTACCAGAACCACTAGGGATATTGCTGAGCCTATTGTTTGGATCAATGTAGGATGCAGCATCATCTAGCTCATTGTCTCCCATCCCTTCTTTTCCTTGTTCAGCAGATTGCATCGCTTGCTGAAGGTTCGTTTTTAATGTGTTGACTAAAGATTCGTTACACTTGGCTCTGTAACACCAATTTTGCGCCTCAGCTGTAACTTGCTTCATCCGTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430591" ref_strand="+" ref_description="SGN-E430591 [STM-53-N4]">
      <seq>aagaagaaccatgactgtctaaactccaatttcaagaagttgcttctatacaataaatccacaacaattatctaaaatctgtatgagattattttttgtgccttagtcttatttttgttcatatttcaagacaagaacacttcaacactagcagttgtcatcaactggcagataggacatacactaactaatccttcacaatctttacacaaacacaagtgtctacaaggcatcaataagacggatacctcctttaatttgcataccttgcagataatcccctttttcgtcgatgtacacttaccagaaccactagggatattgctgagcctattgtttggatcaatgtaggatgcagcatcatctagctcattgtctcccatcccttcttttccttggtcagcaaattgcatcgcttgctgaaggttcgtttttaatgtgttgactaaagattcgttacacttggctctgtaacaccaattttgcgcctcagctgtaacttgcttcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="79006" stop="77924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78704" g_stop="78224" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="511" r_length="481" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E430591" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78704" e_stop="78224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAAGTTGCTTCTGTACATTAAATCCACAACAATTATCTAAAATGTGTATGAGATTATTTCTTGTGCCTTAGTCTTATTTCTGTTCATATTTCAAGACAAGAACACTTCAACACTAGCAGTTGTCATCAACTGGCAGATAGGACATACACTAACTAATCCTTCACAATCTTTACACAAACACAAGTGTCTACAAGGCATCAATAAGATGCATACCTCCTTTAATTTGCATACCTTGCAGATAATGCCTTTTTTCGTCGATGCACACTTACCAGAACCACTAGGAATATTGCTGAGCCTATTGTTTCGATCAATGTAGGATGCAGCATCATCTAGCTCATTGTCTCCCATCCCTTCTTTTCCTTGTTCAGCAGATTGCATCGCTTGCTGAAGGTTCGTTTTTAAAGTGTTGACTAAAGATTCGTTACACTTGGCTCTGTAACACCAATTTTGCGCCTCAGCTGTAACTTGCTTCATCC</genome_strand>
        <mrna_strand>TTCAAGAAGTTGCTTCTATACAATAAATCCACAACAATTATCTAAAATCTGTATGAGATTATTTTTTGTGCCTTAGTCTTATTTTTGTTCATATTTCAAGACAAGAACACTTCAACACTAGCAGTTGTCATCAACTGGCAGATAGGACATACACTAACTAATCCTTCACAATCTTTACACAAACACAAGTGTCTACAAGGCATCAATAAGACGGATACCTCCTTTAATTTGCATACCTTGCAGATAATCCCCTTTTTCGTCGATGTACACTTACCAGAACCACTAGGGATATTGCTGAGCCTATTGTTTGGATCAATGTAGGATGCAGCATCATCTAGCTCATTGTCTCCCATCCCTTCTTTTCCTTGGTCAGCAAATTGCATCGCTTGCTGAAGGTTCGTTTTTAATGTGTTGACTAAAGATTCGTTACACTTGGCTCTGTAACACCAATTTTGCGCCTCAGCTGTAACTTGCTTCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719920" ref_strand="+" ref_description="SGN-E719920 [FC09BA07]">
      <seq>gctctctggcctttctcttccattttcataatcccaaggatcaaagaacttcatttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcaaaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagctgtactgttcttgaaacagctggagagggtggacttccaacattgttgaaggttatagaggcgtcctctgctagtaacagttcaaataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacaaagtttgcaattgagaggctggcagttaatgaagccacatttcgttgtgcagatgagcttggttggcaacctcagcgagtgcctattgttccagaagatggaggaataaatcaaataagaaagacatgttgccctaccgagtcaatcctggagttgttaaagaagaaagggtttgatgtgacgttgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactatcattctctccgatttgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttccatagagttcatcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagttggctccaaatggaattcttagtttcaaaactttatgttgtttaattatgtaattctcatttacttgtaaatagattccccatgtccaatgaacatcttgttcacgtttccttgaaactccgttgatttataattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80339" stop="84782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80638" g_stop="80695" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="344" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="449" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83901" g_stop="83948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="497" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84092" g_stop="84482" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="888" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E719920" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80638" e_stop="80695"/>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83948"/>
          <exon e_start="84092" e_stop="84482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTGGCCTTTCTCTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGTTGATTTATAATTGAA</genome_strand>
        <mrna_strand>GCTCTCTGGCCTTTCTCTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAAAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG..............................................................................CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGTTGATTTATAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717763" ref_strand="+" ref_description="SGN-E717763 [FC02CF12]">
      <seq>gctggcctttctcttcccttttcataatcccaaggatcaaagaacttcatttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcaaaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagctgtactgttcttgaaacagctggagagggtggacttccaacattgttgaaggttatagaggcgtcctctgctagtaacagttcaaataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacaaagtttgcaattgagaggctggcagttaatgaagccacatttcgttgtgcagatgagcttggttggcaacctcagcgagtgcctattgttccagaagatggaggaataaatcaaataagaaaggtctcttctatgatactgaatctgctcatgtatactagatgaagaaacatgttgccctaccgagtcaatcctggagttgttaaagaagaaagggtttgatgtgacgttgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactatcattctctccgatttgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttccatagagttcatcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagttggctccaaatggaattcttagtttcaaaactttatgttgtttaattatgtaattctcatttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80343" stop="84711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80642" g_stop="80695" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="340" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="445" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83901" g_stop="83994" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="539" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83995" i_stop="84091" i_length="97">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84092" g_stop="84411" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="859" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E717763" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80642" e_stop="80695"/>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83994"/>
          <exon e_start="84092" e_stop="84411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGCCTTTCTCTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTG</genome_strand>
        <mrna_strand>GCTGGCCTTTCTCTTCCCTTTTCATAATCCCAAGGATCAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAAAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG..............................................................................CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAA.................................................................................................ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722773" ref_strand="+" ref_description="SGN-E722773 [FC18BB08]">
      <seq>aatcggccgaattgctggcctttctcttccattttcataatcccaaggatcaaagaacttcatttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcaaaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagctgtactgttcttgaaacagctggagagggtggacttccaacattgttgaaggttatagaggcgtcctctgctagtaacagttcaaataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacaaagtttgcaattgagaggctggcagttaatgaagccacatttcgttgtgcagatgagcttggttggcaacctcagcgagtgcctattgttccagaagatggaggaataaatcaaataagaaagacatgttgccctaccgagtcaatcctggagttgttaaagaagaaagggtttgatgtgacgttgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactatcattctctccgatttgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttccatagagttcatcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagttggctccaaatggaattcttagtttcaaaactttatgttgtttaattatgtaattctcatttacttgtaaatagattccccatgtccaatgaacatcttgttcacgtttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80343" stop="84757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80643" g_stop="80695" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="67" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="353" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="458" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83901" g_stop="83948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="506" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84092" g_stop="84457" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="872" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E722773" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80643" e_stop="80695"/>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83948"/>
          <exon e_start="84092" e_stop="84457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCCTTTCTCTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTT</genome_strand>
        <mrna_strand>CTGGCCTTTCTCTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAAAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG..............................................................................CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724548" ref_strand="+" ref_description="SGN-E724548 [FC24BG10]">
      <seq>aatcggccgaattgctggcctttctcttcctttttcataatcccaaggatcaaagaacttcatttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcaaaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagctgtactgttcttgaaacagctggagagggtggacttccaacattgttgaaggttatagaggcgtcctctgctagtaacagttcaaataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacaaagtttgcaattgagaggctggcagttaatgaagccacatttcgttgtgcaaatgagcttggttggcaacctcagcgagtgcctattgttccagaagatggaggaataaatcaaataagaaagacatgttgccctaccgagtcaatcctggagttgttaaagaagaaagggtttgatgtgacgttgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactatcattctctccgatttgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttccatagagttcatcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagttggctccaaatggaattcttagtttcaaaactttatgttgtttaattatgtaattctcatttacttgtaaatagattccccatgtccaatgaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80343" stop="84741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80643" g_stop="80695" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="67" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="353" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="458" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83901" g_stop="83948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="506" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84092" g_stop="84441" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="856" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E724548" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80643" e_stop="80695"/>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83948"/>
          <exon e_start="84092" e_stop="84441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCCTTTCTCTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATC</genome_strand>
        <mrna_strand>CTGGCCTTTCTCTTCCTTTTTCATAATCCCAAGGATCAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAAAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAAATGAGCTTGGTTGGCAACCTCAG..............................................................................CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723360" ref_strand="+" ref_description="SGN-E723360 [FC20BA10]">
      <seq>gggcgattggcggcaaatcggccgaattgggcctttctcttccattttcataatcccaaggatcaaagaacttcatttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcaaaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagctgtactgttcttgaaacagctggagagggtggacttccaacattgttgaaggttatagaggcgtcctctgctagtaacagttcaaataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacaaagtttgcaattgagaggctggcagttaatgaagccacatttcgttgtgcagatgagcttggttggcaacctcagcgagtgcctattgttccagaagatggaggaataaatcaaataagaaagacatgttgccctaccgagtcaatcctggagttgttaaagaagaaagggtttgatgtgacgttgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactatcattctctccgatttgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttccatagagttcatcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagttggctccaaatggaattcttagtttcaaaactttatgttgtttaattatgtaattctcatttacttgtaaatagattccccatgtccaatgaacatcttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80345" stop="84746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80645" g_stop="80695" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="80" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="366" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="471" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83901" g_stop="83948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="519" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84092" g_stop="84446" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="874" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E723360" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80645" e_stop="80695"/>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83948"/>
          <exon e_start="84092" e_stop="84446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTTTCTCTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTT</genome_strand>
        <mrna_strand>GGCCTTTCTCTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAAAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG..............................................................................CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718049" ref_strand="+" ref_description="SGN-E718049 [FC03CA09]">
      <seq>gcctttctcttccattttcataatcccaaggatcaaagaacttcatttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcagaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagctgtactgttcttgaaacagctggagagggtggacttccaacattgttgaaggttatagaggcgtcctctgctagtaacagttcaaataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacaaagtttgcaattgagaggctggcagttaatgaagccacatttcgttgtgcagatgagcttggttggcaacctcagcgagtgcctattgttccagaagatggaggaataaatcaaataagaaagacatgttgccctaccgagtcaatcctggagttgttaaagaaaaaagggtttgatgtgacgttgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactatcattctctccgatttgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttccatagagttcatcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagttggctccaaatggaattcttagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80346" stop="84670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80646" g_stop="80695" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="336" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="441" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83901" g_stop="83948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="489" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84092" g_stop="84370" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="768" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E718049" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80646" e_stop="80695"/>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83948"/>
          <exon e_start="84092" e_stop="84370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTCTCTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTC</genome_strand>
        <mrna_strand>GCCTTTCTCTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG..............................................................................CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAAAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553795" ref_strand="+" ref_description="SGN-E553795 [cTSC-2-E11]">
      <seq>cttccattttcataatcccaaggatcaaagaacttcatttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcagaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagctgtactgttcttgaaacagctggagagggtggacttccaacattgttgaaggttatagaggcgtcctctgctagtaacagttcaaataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacaaagtttgcaattgagaggctggcagttaatgaagccacatttcgttgtgcagatgagcttggttggcaacctcagcgagtgcctattgttccagaagatggaggaataaatcaaataagaaagacatgttgccctaccgagtcaatcctggagttgttaaagaagaaagggtttgatgtgacgttgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactatcattctctccgatttgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttccatagagttcatcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagttggctccaaatggaattcttagtttcaaaactttatgttgtttaattatgtaattctcatttacttgtaaatagattccccatgtccaatgaacatcttgttcacgtttccttgaaactccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80354" stop="84767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80654" g_stop="80695" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="328" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="433" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83901" g_stop="83948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="481" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84092" g_stop="84467" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="857" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E553795" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80654" e_stop="80695"/>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83948"/>
          <exon e_start="84092" e_stop="84467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGT</genome_strand>
        <mrna_strand>CTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG..............................................................................CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200427" ref_strand="+" ref_description="SGN-E200427 [cLEC-1-O5]">
      <seq>ttccattttcataatcccaaggatcaaagaacttcatttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcagaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagctgtactgttcttgaaacagctggagagggtggacttccaacattgttgaaggttatagaggcgtcctctgctagtaacagttcaaataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacaaagtttgcaattgagaggctggcagttaatgaagccacatttcgttgtgcagatgagcttggttggcaacctcagcgagtgccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80355" stop="84130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80655" g_stop="80695" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="327" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="432" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83901" g_stop="83910" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="442" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E200427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80655" e_stop="80695"/>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTA</genome_strand>
        <mrna_strand>TTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG..............................................................................CGAGTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200361" ref_strand="+" ref_description="SGN-E200361 [cLEC-1-O17]">
      <seq>ttccattttcattatcccaaggatcaaagaacttcatttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcagaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagctgtactgttcttgaaacagctggagagggtggacttccaacattgttgaaggttatagaggcgtcctctgctagtaacagttcatataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacatagtttgcaattgagaggctggcagttaatgaagccacattttgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80355" stop="84095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80655" g_stop="80695" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="327" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83718" g_stop="83795" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="405" r_length="78" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E200361" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80655" e_stop="80695"/>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGT</genome_strand>
        <mrna_strand>TTCCATTTTCATTATCCCAAGGATCAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCATATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACATAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204061" ref_strand="+" ref_description="SGN-E204061 [cLEC-22-O6]">
      <seq>ttccattttcataatcccaaggatcaaagaacttcatttaggatccctattcctattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgttacggggttcaagaaatttcacggcgtagctcagaatcctacagagacggcatttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagctagcctgttcttgaaactactggagagggtggactttcaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80355" stop="82471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80655" g_stop="80695" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.736" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82171" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="266" r_length="225" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E204061" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80655" e_stop="80695"/>
          <exon e_start="81947" e_stop="82171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATT</genome_strand>
        <mrna_strand>TTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTATTCCTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTTACGGGGTTCAAGAAATTTCACGGCGTAGCTCAGAATCCTACAGAGACGGCATTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTAGCCTGTTCTTGAAACTACTGGAGAGGGTGGACTTTCAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582781" ref_strand="+" ref_description="SGN-E582781 [8414]">
      <seq>cattttcataatcccaagactcaaaagaacttcatttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcagaatcctacggagacagctgttagcaacttgaaatattatgttgaaatgaaaggattacctgctggtgtgaccttgggcagctgtactgttcttgaaacagctggagagggtggacttccggcattgttgaaggttatagaggagtcctctgctggaaacagttcaaataatggacaagtcatatggcttcaccttggggtaaatagtggagcaacaaagtttgcaattgagaggctggcagtaaatgaagccacatttcgttgtgcagatgagcttggttggcaacctcagcgagtgcctattgttccagaagatggaggaataaatcaacataagcaaagacatcttgccctaccgagtcaatcctgngagttcttaaagaagaaagggtttgatgtgacaatgtcggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80358" stop="84461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80658" g_stop="80695" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="325" r_length="286" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="430" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83901" g_stop="83948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="480" r_length="50" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84092" g_stop="84161" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="551" r_length="71" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E582781" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80658" e_stop="80695"/>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83948"/>
          <exon e_start="84092" e_stop="84161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCATAATCCCAAGGATC-AAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAA-ATAAG-AAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTG-GAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACG</genome_strand>
        <mrna_strand>CATTTTCATAATCCCAAGACTCAAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACAGCTGTTAGCAACTTGAAATATTATGTTGAAATGAAAGGATTACCTGCTGGTGTGACCTTGGGCAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCGGCATTGTTGAAGGTTATAGAGGAGTCCTCTGCTGGAAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAATAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTAAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG..............................................................................CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAACATAAGCAAAG...............................................................................................................................................ACATCTTGCCCTACCGAGTCAATCCTGNGAGTTCTTAAAGAAGAAAGGGTTTGATGTGACAATGTCGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284615" ref_strand="+" ref_description="SGN-E284615 [cLES-3-F13]">
      <seq>ttcataatcccaaggatcaaagaacttcatttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcagaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagctgtactgttcttgaaacagctggagagggtggacttccaacattgttgaaggttatagaggcgtcctctgctagtaacagttcaaataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacaaagtttgcaattgagaggctggcagttaatgaagccacatttcgttgtgcagatgagcttggttggcaacctcagcgagtgcctattgttccagaagatggaggaataaatcaaataagaaagacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80362" stop="84248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80662" g_stop="80695" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="320" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="425" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83901" g_stop="83948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="473" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84092" g_stop="84096" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="478" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E284615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80662" e_stop="80695"/>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83948"/>
          <exon e_start="84092" e_stop="84096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAATCCCAAGGATCAAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATG</genome_strand>
        <mrna_strand>TTCATAATCCCAAGGATCAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG..............................................................................CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601050" ref_strand="+" ref_description="SGN-E601050 [54076]">
      <seq>aatcggcacgaggctcaaaagaacttcatttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcagaatcctacggagacagcagttagcaacttgaaatattatgttgaaatgaaaggattacctgctggtgtgaccttgggcagctgtactgttcttgaaacagctggagagggtggacttccggcattgttgaaggttatagaggagtcctctgctggaaacagttcaaataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacaaaatttgcaattgagaggctggcagtaaatgaagccacatttcgttgtgcagatgagcttggttggcaacctcagcgagtgcctattgttccagaagatggaggaataaatcaaataagaaagacatcttgcccaaccgagtcaatcctggagttcttaaagaagaaagggtttgatgtgacaatgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactaccattctctccgatttgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttcaatagagtgaatcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80370" stop="84644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80664" g_stop="80695" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.719"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.736" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="319" r_length="286" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="424" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83901" g_stop="83948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="472" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84092" g_stop="84344" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="725" r_length="253" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E601050" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80664" e_stop="80695"/>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83948"/>
          <exon e_start="84092" e_stop="84344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATCCCAAGGATCAA-AGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGT</genome_strand>
        <mrna_strand>AATCGGCACGAGGCTCAAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACAGCAGTTAGCAACTTGAAATATTATGTTGAAATGAAAGGATTACCTGCTGGTGTGACCTTGGGCAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCGGCATTGTTGAAGGTTATAGAGGAGTCCTCTGCTGGAAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACAAAATTTGCAATTGAGAGGCTGGCAGTAAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG..............................................................................CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATCTTGCCCAACCGAGTCAATCCTGGAGTTCTTAAAGAAGAAAGGGTTTGATGTGACAATGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTACCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCAATAGAGTGAATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279922" ref_strand="+" ref_description="SGN-E279922 [cLER-8-I10]">
      <seq>taatcccaaggatcaaagaacttcatttaggattcctattcgtattttgcacgaagaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggggtagctcaaaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80366" stop="82428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80666" g_stop="80695" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.736" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82128" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="212" r_length="182" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E279922" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80666" e_stop="80695"/>
          <exon e_start="81947" e_stop="82128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAGGATCAAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCT</genome_strand>
        <mrna_strand>TAATCCCAAGGATCAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTATTCGTATTTTGCACGAAGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGGGTAGCTCAAAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719251" ref_strand="+" ref_description="SGN-E719251 [FC07AH10]">
      <seq>atcccaaggatcaaagaacttcatttaggatccctaaaagtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcagaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagctgtactgttcttgaaacagctggagagggtggacttccaacattgttgaaggttatagaggcgtcctctgctagtaacagttcaaataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacaaagtttgcaattgagaggctggcagttaatgaagccacatttcgttgtgcagatgagcttggttggcaacctcagcgagtgcctattgttccagaagatggaggaataaatcaaataagaaagacatgttgccctaccgagtcaatcctggagttgttaaagaagaaagggtttgatgtgacgttgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactatcattctctccgatttgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttccatagagttcatcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagttggctccaaatggaattcttagtttcaaaactttatgttgtttaattatgtaattctcatttacttgtaaatagattccccatgtccaatgaacatcttgttcacgtttccttgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80368" stop="84762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80668" g_stop="80695" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.736" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="314" r_length="286" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="419" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83901" g_stop="83948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="467" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84092" g_stop="84462" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="838" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E719251" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80668" e_stop="80695"/>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83948"/>
          <exon e_start="84092" e_stop="84462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAGGATCAAAGAACTTCATTTAGGTAAATCTCATCTCTCTAGTTTTGGAAATTCTGGACCTTTGGGTTTTGTTATGAAGTTGATTCTTTTTTAAAAGTTGTGATCTTTTGTGTTATCATATTTTCTTCAGTAGTTGCTTTTGCCTTTTATATCTCTATGATCTTTATTTTTCAATTCGGATAGTTCTTTTTGTTTTTATTGTATACGAGTGCAACGTTGGAAATTATGAACCTTTATGTGTTGTTATGAAGTGGATTCTTTGTTTAAAGTTTTGATCTTTGTTCAATAGGATTATCATCTGATGGTGTTTGATTTTAGCAGTTATCTTTGCCTCTATGCTCGTGATTTTACTTGAATTGCAAAATTTTCTAGTCGGTGGTGGTCTTTTTGTTTTTATGTTTTGAACCTTTCTTTTTGAAGATTCTGTGTAGTTATAAAATTGAGGATAGGGAAGGGGAAATGGAAGAAGGTGGATAATCGAATTTTCACGAACAAGGTGAAAGTTCATGTAGATTATGAATATTCACTTCTTAATCTGCTTCCAAAGTATGGATTGATGGGTATTTTGTTTAGGGGTTGACTTTGCCTTTAGACTTGTACGTTACTCCTGGTTTTTTATTGAATTGTGAATGTGTAATGAATCACCTTGTCTAGATAAGCAAGCTTTAGATCAGAGGTGGAGTCAAGATTTAAATTTTATGGATTCAAGCTCAAAGGGCATTGGACCTATTATATTTTTAAAGTTATGGGTTCATATCTTGAATTTTAGTAAATTTATGCTCCGCATTGAAAGTATATCTCCAAGGTTTAGTTTTTGATTTCCATTGGAACTGAAAGATGGGTTGGTCTTGGTAGCAAAAGATGGTCCTCGGTAAATCAAGGGGGGGTTACGAATAAAAAGGTGAATACAAGTTTAATCATGTAGCTATCATGGTTTTGTCTTTTTACCTTTTTGTCAATTGTTTGTTTAAGCACTAAGAATTTTTTTTAACTTTTGCTTGGTTTGTTGAATTGAAATGTTGCGATGTTGCCTTGCTCATTTTGATTGTTTATCAAAATCCAAGAGGTAATATACCTGGCACAACTCCTCAGTAATTGCTTTGCCCAGTTTTTACTAATGTACTTGTCATGTATGCTGAAATGTCAATTGTTATCTTTTGAATACTTTGAATGTTTAATCAAGATTACCATTTCAAAAATGTGTGATGAATATTAAAGACGGTGTTGTAAGTGGCATGAGCTGGTAACTAATTGTGGAAGCTATCAATTATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAAC</genome_strand>
        <mrna_strand>ATCCCAAGGATCAAAGAACTTCATTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTAAAAGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG..............................................................................CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358772" ref_strand="+" ref_description="SGN-E358772 [cLHT-24-E12]">
      <seq>atttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcagaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="81643" stop="82428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81941" g_stop="82128" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E358772" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81941" e_stop="82128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCT</genome_strand>
        <mrna_strand>ATTTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335431" ref_strand="+" ref_description="SGN-E335431 [cTOE-2-D2]">
      <seq>aaagaacttcatttaggattcctattcgtattttgcacgaggaaatgggatcggaggggccaaaatctgtgaccattcatgtcacggggttcaagaaatttcacggtgtagctcaaaatcctacggagacggcagttagcaacttgaaatattatgttgaaaagaaaggattacctgctggtgtgaccttgggtagctgtactgttcttgaaacagctggagagggtggacttccaacattgttgaaggttatagaggcgtcctctgctagtaacagttcaaataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacaaagtttgcaattgagaggctggcagttaatgaagccacatttcgttgtgcagatgagcttggttggcaacctcaacgagtgccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="81626" stop="84121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81947" g_stop="82232" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="302" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="407" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83901" g_stop="83910" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="417" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E335431" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81947" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTA</genome_strand>
        <mrna_strand>GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAAAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAA..............................................................................CGAGTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261778" ref_strand="-" ref_description="SGN-E261778 [cLEG-61-C23]">
      <seq>gggtagctgtactgttcttgaaacagctggagagggtggacttccaacattgttgaaggttatagaggcgtcctctgctagtaacagttcaaataatggacaagtcatatggcttcaccttggggtaaacagtggagcaacaaagtttgcaattgagaggctggcagttaatgaagccacatttcgttgtgcagatgagcttggttggcaacctcagcgagtgcctattgttccagaagatggaggaataaatcaaataagaaagacatgttgccctaccgagtcaatcctggagttgttaaagaagaaagggtttgatgtgacgttgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactatcattctctccgatttgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttccatagagttcatcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagttggctccaaatggaattcttagtttcaaaactttatgttgtttaattatgtaattctcatttacttgtaaatagattccccatgtccaatgaacatcttgttcacgtttccttgaaactccgttgatttataattgaagtggcttttaagcaaaaaaaaaaaaaaaaaacgcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="81821" stop="84799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82121" g_stop="82232" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83718" g_stop="83822" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="217" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83901" g_stop="83948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="265" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84092" g_stop="84485" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="659" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="688"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E261778" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261778" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82121" e_stop="82232"/>
          <exon e_start="83718" e_stop="83822"/>
          <exon e_start="83901" e_stop="83948"/>
          <exon e_start="84092" e_stop="84485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGGGTTAGTTCTGCTAAGACAAATATTCTCCTTTAACTAATTTGTGTGGATTCATGTTTGCTCTTTAAACTGTCTTGTGCAGCAAATTGCCGGAATAATATGCGAATTATGCACATTTATGTTACATGAATAGCTAGATGTGTGGTTCTTCTTTTTCTGATTGTTTCTTTTTTATTTACTTCCTCTGATTTTTTGATACTTTGATGGGTAAATGTATTGTAGTGAGCTAATGATCATACTCCTATAGTCCAACAGAGACAGAAACACACCAACTGATTTCTTCCCATGTGTTACCTGGTACCTATTGCTGGTGGGAGGTAGCAGGTATTCCGTGGAATTAGTCGAGGTGTGCGCAAGCTGGACTGGACACCATGGTTATAAAGATCATACTCCTATAGTGCCAGATTGAGAGCTTTTTGTCCCGTCCTGGTTGCAGCCCAGAGCATTCTTCAGCTAGTCTAATATCAAACTCCACATATGCCAATATAAAATGAATAGAGTACTATGATAGGGTACATGCCTACAGGGGGAAAAGACATAATGAACTCAATAATCATCCGCATTAATTTTTCTGAGAGACTGATATGAGTTGGTAATTAGCTGCAAAACCATTTCTTAGGGGAAGTTGATTGGAGGAGTGTCCATTTTCTTTTGTTGACCCTTATGGATGAACTTGACTACAAAAACACATGCATCAGACTGTTCAAACTATGTCCTAACTTGTGGCTATCAAGTTTGGAGGTTGTAGATTGGATAAATGAAAGATGAGCTATCTATCCTTGTGAAAGACCAAATTTATAGGCGATACTAAAACCCAATATTATTAGCAAAAAATTTTTCCAAGTTATACCATTTTTGTTGAACTTTTAGTCTCCCAGTTTGGGATTCCCAAAGGGTAACTAGTTAGGACTATAACCATCTCATACAAAATAGTAAAACATACAAAACTGATGCCAATTTGTGGCCACGAGACTAGCAATTGAGTATTTGGATTGGGAGTGCATGACTGAAGAAAAGAAAAGGCTAAAACATGACCAATGTTGCCCCTTGTGTTTGTATCTAATTGCATTTTTCTCAATAGTTAGTTAGCTGCCAATCTATGTGGGCTGTCAGGATAAATAGCCATTACCTGGAATTTTAGCATGCCAACTTAAATCCAAAGAAGTATGGCAGTACATATCAGGTCTTTCGTATGCAAACAACAGGAGGAGATACTCTATGCGTCAGTGTTTGTGAAGACACTTGAATAGATTTCTCTTTGGAAATTCTAGCGATATAGCTACTTACATAGATAAATATTGAAAGGTTTTGAGGTCGATGATTATAGATGTAGAACACAGTTTATCCTACTTAAGTCTTGTTTGGCAGCCTTGCATTCTGTGGGTGCTCCTGTTCTCCTTCACTCTCTCACACACACACACACACTTGGAATGCTTGAAGAAAAATAAAATGTGCTGCTGATATAGAAGTCCTGTGTTATCTGTTCAGCTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGTTGATTTATAATTGAAGTG</genome_strand>
        <mrna_strand>GGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG..............................................................................CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGTTGATTTATAATTGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261957" ref_strand="-" ref_description="SGN-E261957 [cLEG-58-E6]">
      <seq>agatgagcttggttggcaccctcagcgagtgcctattgttccagaagatggaggaataaatcaaataagaaagacatgttgccctaccgagtcaatcctggagttgttaaagaagaaagggtttgatgtgacgttgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactatcattctctccgatttgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttccatagagttcatcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagttggctccaaatggaattcttagtttcaaaactttatgttgtttaattatgtaattctcatttacttgtaaatagattccccatgtccaatgaacatcttgttcacgtttccttgaaactccgttgatttataattgaagtggcttttaagcaaaaaaaaaaaaaaaaaacgcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="83593" stop="84799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83798" g_stop="83822" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83901" g_stop="83948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="73" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84092" g_stop="84485" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="467" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="496"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E261957" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261957" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83798" e_stop="83822"/>
          <exon e_start="83901" e_stop="83948"/>
          <exon e_start="84092" e_stop="84485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAGCTTGGTTGGCAACCTCAGGTAAGGTGTTTCATCTGTTCACCGAGATGAGCTAACCTGATATTTTGTTGTGCTAATATTCTTATTGATTATCCACAGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGTTGATTTATAATTGAAGTG</genome_strand>
        <mrna_strand>AGATGAGCTTGGTTGGCACCCTCAG..............................................................................CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGTTGATTTATAATTGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595096" ref_strand="+" ref_description="SGN-E595096 [38362]">
      <seq>agcgagtgctattgtcccagaagatggaggaataaatcaaataagaaagacatcttgccctaccgagtcaatcctggagttcttaaagaagaaagggtttgatgtgacaatgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactaccattctctccgattcgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttcaatagagtgagtcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagttggcttcaaatggaattcatagtttcaaaactttctgttgtttaattatgtaattctgatttacttgtaaatagattccccagtgcaatgaacatcaattgttcatgtttcctttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="83599" stop="84741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83899" g_stop="83948" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84092" g_stop="84462" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="422" r_length="373" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E595096" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83899" e_stop="83948"/>
          <exon e_start="84092" e_stop="84462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATC--TTGTTCACGTTTCC-TTGAAAC</genome_strand>
        <mrna_strand>AGCGAGTG-CTATTGTCCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATCTTGCCCTACCGAGTCAATCCTGGAGTTCTTAAAGAAGAAAGGGTTTGATGTGACAATGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTACCATTCTCTCCGATTCGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCAATAGAGTGAGTCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTTCAAATGGAATTCATAGTTTCAAAACTTTCTGTTGTTTAATTATGTAATTCTGATTTACTTGTAAATAGATTCCCCA-GTGCAATGAACATCAATTGTTCATGTTTCCTTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254974" ref_strand="-" ref_description="SGN-E254974 [cLEG-33-N5]">
      <seq>tgttccagaagatggaggaataaatcaaataagaaagacatgttgccctaccgagtcaatcctggagttgttaaagaagaaagggtttgatgtgacgttgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactatcattctctccgatttgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttccatagagttcatcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagttggctccaaatggaattcttagtttcaaaactttatgttgtttaattatgtaattctcatttacttgtaaatagattccccatgtccaatgaacatcttgttcacgtttccttgaaactccgtcgatttataattgaagtggcttttaagcaaaaaaaaaaaaaaaaaacgcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="83612" stop="84799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83912" g_stop="83948" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84092" g_stop="84485" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="431" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="460"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E254974" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254974" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83912" e_stop="83948"/>
          <exon e_start="84092" e_stop="84485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGTTGATTTATAATTGAAGTG</genome_strand>
        <mrna_strand>TGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGTCGATTTATAATTGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255709" ref_strand="-" ref_description="SGN-E255709 [cLEG-36-B11]">
      <seq>tgttccagaagatggaggaataaatcaaataagaaagacatgttgccctaccgagtcaatcctggagttgttaaagaagaaagggtttgatgtgacgttgtcggacgatgcaggtcgttttgtgtgcaattatgtgtactatcattctctccgatttgcagaggaaaaaggtcacaagtgtctgtttgtccatgttcctaccttccatagagttcatcaagagaaacaaatggaatttgttgctgctctgctggaggctattgcatcaacttgttgaatatcagtacagttggctccaaatggaattcttagtttcaaaactttatgttgtttaattatgtaattctcatttacttgtaaatagattccccatgtccaatgaacatcttgttcacgtttccttgaaactccgttgatttataattgaagtggcttttaagcaaaaaaaaaaaaaaaaaacgcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="83612" stop="84799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83912" g_stop="83948" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143">
            <donor d_prob="0.843" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84092" g_stop="84485" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="431" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="460"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-E255709" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255709" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83912" e_stop="83948"/>
          <exon e_start="84092" e_stop="84485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAAGTAGAGTGCTTTTTTTAATCTTTTGTTTACTAATCAGTTAAGTTCTTTGTCTCCGTTTTCCTTGTGTCGTAATCTATTTTTTTCTTGGTTGTTGAAGACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGTTGATTTATAATTGAAGTG</genome_strand>
        <mrna_strand>TGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG...............................................................................................................................................ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGTTGATTTATAATTGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541091" ref_strand="+" ref_description="SGN-E541091 [TUS-61-L8](-)">
      <seq>gatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaantatatgtaattgctgtttgattaggtatatcatcattatcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87840" stop="84881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87540" g_stop="87468" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="144" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="264" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="383" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="465" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85390" g_stop="85173" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="684" r_length="219" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E541091" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87540" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAA-TATATGTAATTGCTGTTTGATTAGGTATATCATCATTATCATATATTATTATT</genome_strand>
        <mrna_strand>GATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAANTATATGTAATTGCTGTTTGATTAGGTATATCATCATTATCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341449" ref_strand="+" ref_description="SGN-E341449 [cTOE-23-K5]">
      <seq>caagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaggtatatcatcattaaaaagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87811" stop="84881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87511" g_stop="87468" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="115" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="235" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="354" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="436" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85390" g_stop="85189" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="638" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="639" polyA_stop="653"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E341449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87511" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAGGTATATCATCATT</genome_strand>
        <mrna_strand>CAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAGGTATATCATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725233" ref_strand="+" ref_description="SGN-E725233 [FC26BH11]">
      <seq>gatatttcagcgttaatctcaggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88768" stop="84903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88469" g_stop="88405" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="235" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="306" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="426" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="545" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="627" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="816" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="817" polyA_stop="833"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E725233" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88469" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTTCAGCGTTAATCTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>GATATTTCAGCGTTAATCTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539800" ref_strand="+" ref_description="SGN-E539800 [TUS-59-L24](-)">
      <seq>ctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaggtaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88739" stop="84881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88439" g_stop="88405" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="205" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="276" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="396" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="515" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="597" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="786" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="789" polyA_stop="808"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E539800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88439" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>CTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552314" ref_strand="+" ref_description="SGN-E552314 [cTSB-3-I18]">
      <seq>attcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgggtgtctatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggaaaaatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaggtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87904" stop="84897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87604" g_stop="87468" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="208" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="328" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="447" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="529" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="718" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="734"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E552314" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87604" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>ATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGGGTGTCTATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAAAAATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551604" ref_strand="+" ref_description="SGN-E551604 [cTSB-1-E13]">
      <seq>attcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaggtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87904" stop="84897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87604" g_stop="87468" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="208" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="328" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="447" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="529" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="718" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="734"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E551604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87604" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>ATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553019" ref_strand="+" ref_description="SGN-E553019 [cTSB-5-M16]">
      <seq>attcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaggtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87904" stop="84897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87604" g_stop="87468" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="208" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="328" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="447" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="529" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="718" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="735"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E553019" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87604" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>ATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556377" ref_strand="+" ref_description="SGN-E556377 [cTSD-3-E3]">
      <seq>attcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaggtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87904" stop="84897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87604" g_stop="87468" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="208" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="328" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="447" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="529" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="718" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="734"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E556377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87604" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>ATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371223" ref_strand="+" ref_description="SGN-E371223 [TUS-28-L11](-)">
      <seq>atgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttttagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaggtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87864" stop="84881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87564" g_stop="87468" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="168" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="288" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="407" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="489" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="678" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="699"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E371223" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87564" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>ATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTTTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539145" ref_strand="+" ref_description="SGN-E539145 [TUS-58-M3](-)">
      <seq>tggtttcaatgtggagactgttgagtacaagatcatcagcttcattgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaggtataaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86948" stop="84897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="73" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="193" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="312" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="394" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="583" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E539145" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>GTTTCAATGTGGAGACTGTTGAGTACAAGATCATCAGCTTCATTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714756" ref_strand="+" ref_description="SGN-E714756 [FB12BD08]">
      <seq>gtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86939" stop="84903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86639" g_stop="86577" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="183" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="302" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="384" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="573" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="583"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E714756" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86639" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>GTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732142" ref_strand="+" ref_description="SGN-E732142 [LB01BE11]">
      <seq>ccaataacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaggtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86922" stop="84883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86623" g_stop="86577" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="167" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="286" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="368" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="557" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="577"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E732142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86623" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>CCAATAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339092" ref_strand="+" ref_description="SGN-E339092 [cTOF-6-K7]">
      <seq>ggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgnggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaggtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86723" stop="84881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86591" g_stop="86577" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="135" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="254" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="336" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="526" r_length="190" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="529" polyA_stop="553"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E339092" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86591" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTG-GGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>GGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGNGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291028" ref_strand="-" ref_description="SGN-E291028 [cLET-8-N18]">
      <seq>catttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86674" stop="84903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86374" g_stop="86299" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="195" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="277" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="466" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="467" polyA_stop="485"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E291028" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291028" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86374" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>CATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288033" ref_strand="-" ref_description="SGN-E288033 [cLES-7-P9]">
      <seq>gatgctgtgcttctagtatctgctagcaaccaagatcttcctaacgcaatgaatgctgctgcaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaccaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctgaatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatgactgtgtaacacaatggtcgaatatatgtaattgctgtttagtaggtcccaaaaaaaaaaataactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86029" stop="84900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85729" g_stop="85623" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="189" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="377" r_length="188" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="383" polyA_stop="396"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E288033" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288033" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85729" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>GATGCTGTGCTTCTAGTATCTGCTAGCAACCAAGATCTTCCTAACGCAATGAATGCTGCTGCAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTACCAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGAATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGACTGTGTAACACAATGGTCGAATATATGTAATTGCTGTTT-AGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230615" ref_strand="+" ref_description="SGN-E230615 [cLEL-35-I6](-)">
      <seq>gctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgctgtttgattaggtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86026" stop="84897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85726" g_stop="85623" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="186" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="375" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="392"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E230615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85726" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>GCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230687" ref_strand="+" ref_description="SGN-E230687 [cLEL-35-I6](-)">
      <seq>ctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaatagctgataagcttgggctgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcagacggagttttatctagtattttttacttctcatgtcagtgtggttatgaagctcatgttgaaagcattttgtgttgccgtagggctttttgtaatggctgtgtaagacaatggtcatatatatgtaattgctgtttgattaggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86025" stop="84883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85725" g_stop="85623" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="185" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85390" g_stop="85202" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="374" r_length="189" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="393"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E230687" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85725" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAG</genome_strand>
        <mrna_strand>CTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAGCTGATAAGCTTGGGCTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGACGGAGTTTTATCTAGTATTTTTTACTTCTCATGTCAGTGTGGTTATGAAGCTCATGTTGAAAGCATTTTGTGTTGCCGTAGGGCTTTTTGTAATGGCTGTGTAAGACAATGGTCATATATATGTAATTGCTGTTTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347917" ref_strand="+" ref_description="SGN-E347917 [cTOF-31-M22]">
      <seq>aggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtggggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtncagtgtggttatgaatatcatgttgaaagcatttttgtgtttccttaaggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88749" stop="84912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88449" g_stop="88405" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="215" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="286" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="406" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="525" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="607" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85212" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="789" r_length="182" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E347917" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88449" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGT-GGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGT-CAGTGTGGTTATGAATATCATGTTGAAAGCA-TTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCT</genome_strand>
        <mrna_strand>AGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTNCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTTGTGTTTCCTTAAGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354170" ref_strand="+" ref_description="SGN-E354170 [cTOS-16-C21]">
      <seq>acatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86917" stop="84912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86617" g_stop="86577" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="280" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="362" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85390" g_stop="85212" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="541" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E354170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86617" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCT</genome_strand>
        <mrna_strand>ACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539750" ref_strand="+" ref_description="SGN-E539750 [TUS-59-K19](-)">
      <seq>ggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatataaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88748" stop="84922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88448" g_stop="88405" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="214" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="285" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="405" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="524" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="606" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85213" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="784" r_length="178" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E539750" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88448" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGC</genome_strand>
        <mrna_strand>GGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571907" ref_strand="+" ref_description="SGN-E571907 [30977]">
      <seq>cagcgttaatctcaggtttctctctcaatagatccctccttcaaaaagctcttttcagggatcatcatcaaggaagcgtaatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtttttgctaacaagcaagatcttcctaatgcaatgaatgctgccgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagaggggctttacgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatctggatgcaggggagttttatctagttgtattttctttctcatgtcagtgtggttatgaatatccatgttgaacagcattgtggtgttccnttagaggctttttgtaatgggtgtgtaatacaatggtcgaatatatgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88762" stop="84916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88462" g_stop="88405" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="228" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="299" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="419" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="538" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="620" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85216" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="798" r_length="178" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E571907" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88462" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGTTAATCTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTT-TTTTTTACTTCTCATGTCAGTGTGGTTATGAATAT-CATGTTGAA-AGCATT-TTGTGTTTCCTTAG-GGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAAT</genome_strand>
        <mrna_strand>CAGCGTTAATCTCAGGTTTCTCTCTCAATAGATCCCTCCTTCAAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTAATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGGCTTTACGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGAT-CTGGATGCAGG-GGAGTTTTATCTAGTTGTATTTTCTTTCTCATGTCAGTGTGGTTATGAATATCCATGTTGAACAGCATTGTGGTGTTCCNTTAGAGGCTTTTTGTAATGGGTGTGTAATACAATGGTCGAATATATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596014" ref_strand="-" ref_description="SGN-E596014 [39299]">
      <seq>gttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtttttgctaacaagcaagatcttcctaatgcaatgaatgctgccgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagaggggctttacgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatctggatgcaggcggagttttatctagttgttttttcttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86930" stop="84916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86630" g_stop="86577" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="174" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="293" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="375" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85390" g_stop="85216" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="549" r_length="174" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E596014" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596014" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86630" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAAT</genome_strand>
        <mrna_strand>GTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGGCTTTACGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGAT-CTGGATGCAGGCGGAGTTTTATCTAGTTGTTTTTTCTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746313" ref_strand="+" ref_description="SGN-E746313 [GI|47104741]">
      <seq>tttcagcgttaatctcaggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatatgtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88765" stop="84917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88465" g_stop="88405" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="231" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="302" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="422" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="541" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="623" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85218" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="796" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="797" polyA_stop="818"/>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E746313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88465" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGCGTTAATCTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTA</genome_strand>
        <mrna_strand>TTTCAGCGTTAATCTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700330" ref_strand="+" ref_description="SGN-E700330 [FA12DC06]">
      <seq>ctcatgtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagttttttttacttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttagggctttttgtaatggctgtgtaatacaatggtcgaatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88752" stop="84921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88452" g_stop="88405" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="218" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="289" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="409" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="528" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="610" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85221" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="780" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E700330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88452" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATAT</genome_strand>
        <mrna_strand>CTCATGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620617" ref_strand="-" ref_description="SGN-E620617 [71320]">
      <seq>gggatgctgtgcttctagtttttgctaacaagcaagatcttcctaatgcaatgaatgctgccgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagaggggctttacgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatctggatgcaggcggagttttatctagttgttttttcttctcatgtcagtgtggttatgaatatcatgttgaaagcattttgtgtttccttaggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86031" stop="84958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85731" g_stop="85623" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="191" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85390" g_stop="85257" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="323" r_length="132" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E620617" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620617" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85731" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTT</genome_strand>
        <mrna_strand>GGGATGCTGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGGCTTTACGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGAT-CTGGATGCAGGCGGAGTTTTATCTAGTTGTTTTTTCTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTA-GGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588830" ref_strand="+" ref_description="SGN-E588830 [42392]">
      <seq>caggtttctctctcaatagatccctccttcaaaaagctcttttcagggatcatcatcaaggaagcgtaatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatatcgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtttttgctaacaagcaagatcttcctaatgcaatgaatgctgccgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagaggggctttacgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtcgggttgatctggatgcaggcggagtcttatctagtcgtttagtcttctcatgtcagtgtggttatgaatatcatgttgcaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88750" stop="84978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88450" g_stop="88405" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="216" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="287" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="407" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="526" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="608" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85278" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="722" r_length="114" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E588830" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88450" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGT-GGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTG-AAAGCA</genome_strand>
        <mrna_strand>CAGGTTTCTCTCTCAATAGATCCCTCCTTCAAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTAATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATCGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGGCTTTACGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTCGGGTTGAT-CTGGATGCAGGCGGAGTCTTATCTAGTCGTTTAGTCTTCTCATGTCAGTGTGGTTATGAATATCATGTTGCAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344994" ref_strand="+" ref_description="SGN-E344994 [cTOF-22-D21]">
      <seq>caggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattggtgggttgatcctggatgcaggcggagttttatctagttttttttacttctatgtcagtgtggttatgaatatcatgttgaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88750" stop="84979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88450" g_stop="88405" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="216" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="287" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="407" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="526" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="608" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85279" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="720" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E344994" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88450" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATT-GTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGC</genome_strand>
        <mrna_strand>CAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCT-ATGTCAGTGTGGTTATGAATATCATGTTGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467483" ref_strand="+" ref_description="SGN-E467483 [cSTB-49-I13]">
      <seq>gtttctctctcaatagatccctccttcaaaaagctcttttcagggatcatcatcaaggaagcgtaatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtttttgctaacaagcaagatcttcctaatgcaatgaatgctgccgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagaggggctttacgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgggggttgatctggatgcaagcggagttttatctagttgttttttcttctcatgtcagtgtggttatgaatatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88747" stop="84988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88447" g_stop="88405" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="213" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="284" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="404" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="523" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="605" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85288" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="707" r_length="102" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E467483" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88447" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCAT</genome_strand>
        <mrna_strand>GTTTCTCTCTCAATAGATCCCTCCTTCAAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTAATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGGCTTTACGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGGGGGTTGAT-CTGGATGCAAGCGGAGTTTTATCTAGTTGTTTTTTCTTCTCATGTCAGTGTGGTTATGAATATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454411" ref_strand="+" ref_description="SGN-E454411 [cSTS-23-O19]">
      <seq>gtttctctctcaatagatccctccttcaaaaagctcttttcaggggatcatcatcaaggaagcgtaatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagaagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtttttgctaacaagcaagatcttcctaatgcaatgaatgctgccgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagaggggctttacgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatctggatgcanngcggagtttatctagttgttttttcttctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88747" stop="85045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88447" g_stop="88405" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="215" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="286" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="406" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="525" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="607" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85311" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="686" r_length="79" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E454411" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88447" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGG-GATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAG-AGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCA-GGCGGAGTTTTATCTAGTTTTTTTTACTTCTCAT</genome_strand>
        <mrna_strand>GTTTCTCTCTCAATAGATCCCTCCTTCAAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCATCATCAAGGAAGCGTAATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGGCTTTACGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGAT-CTGGATGCANNGCGGAG-TTTATCTAGTTGTTTTTTCTTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345884" ref_strand="+" ref_description="SGN-E345884 [cTOF-24-I24]">
      <seq>ctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcctacgatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtggggttgatcctggatgcatgcggagttttatctagttntttttacttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88727" stop="85011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88427" g_stop="88405" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="193" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="264" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="384" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="503" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="585" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85314" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="663" r_length="78" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E345884" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88427" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGT-GGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCT</genome_strand>
        <mrna_strand>CTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCCTACGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGGTTGATCCTGGATGCATGCGGAGTTTTATCTAGTTNTTTTTACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371224" ref_strand="+" ref_description="SGN-E371224 [TUS-28-L11]">
      <seq>aggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatcctggatgcaggcggagttttatctagtttttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88749" stop="85019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88449" g_stop="88405" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="215" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="286" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="406" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="525" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="606" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85319" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="678" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E371224" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88449" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTA</genome_strand>
        <mrna_strand>AGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAAC-ACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589906" ref_strand="+" ref_description="SGN-E589906 [43490]">
      <seq>gtttggctctcaatagatccctccttcaaaaagctcttttcagggatcatcatcaaggaagcgtaatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtttttgctaacaagcaagatcttcctaatgcaatgaatgctgccgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagaggggctttacgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatctggatgcaggcggagttttatctagttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88747" stop="85024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88447" g_stop="88405" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.91"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="213" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="284" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="404" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="523" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="605" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85323" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="672" r_length="67" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E589906" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88447" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTT</genome_strand>
        <mrna_strand>GTTTGGCTCTCAATAGATCCCTCCTTCAAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTAATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGGCTTTACGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGAT-CTGGATGCAGGCGGAGTTTTATCTAGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456492" ref_strand="+" ref_description="SGN-E456492 [cSTS-29-N21]">
      <seq>ctctcgttctttcttcattagatccctcttccataatcatctttcagttctcttttagcatagggacaccaacaaggagaaatggggttgacattcaccaagcttttcagccggcttttcgccaagaaagaaatgcgaattctcatggttggacttgatgcagctggtaagaccaccatattgtacaagctcaagctgggcgagatcgttactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagattcgtccattatggagacactatttccagaacactcagggtctcattttcgtggttgatagcaatgacagagatcgtgttgtggaggcaagagatgagttgcataggatgttaaatgaggatgagcttcgggacgcagtgcttcttgtttttgctaacaaacaagatcttcccaatgcaatgaatgctgccgaaataactgataagcttggactgcactctctcaggcagcgtcactggtacattcagagcacctgtgcaacatctggagagggactttatgagggtcttgattggctttccaacaacattgctaacaagtcctaaggcactggaagagttcttgcgggttgatactggatgcaggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87930" stop="85157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="229" r_length="166" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="300" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="420" r_length="120" r_score="0.900"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="539" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="621" r_length="82" r_score="0.915"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85390" g_stop="85344" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="666" r_length="45" r_score="0.702"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E456492" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAG</genome_strand>
        <mrna_strand>GGA-CACCAACAAGG-A--GAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTTTTCGCCAAGAAAGAAATGCGAATTCTCATGGTTGGACTTGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGCGAGATCGTTACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATTCGTCCATTATGGAGACACTATTTCCAGAACACTCAGGGTCTCATTTTCGTGGTTGATAGCAATGACAGAGATCGTGTTGTGGAGGCAAGAGATGAGTTGCATAGGATGTTAAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGACGCAGTGCTTCTTGTTTTTGCTAACAAACAAGATCTTCCCAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCTCTCAGGCAGCGTCACTG..............................................................................GTACATTCAGAGCACCTGTGCAACATCTGGAGAGGGACTTTATGAGGGTCTTGATTGGCTTTCCAACAACATTGCTAACAAG........................................................................TCCTAAGGCACTG--GAAGAGTTCTTGCGGGTTGATACTGGATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362954" ref_strand="+" ref_description="SGN-E362954 [cLPP-2-C2]">
      <seq>agaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcatctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87915" stop="85026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87619" g_stop="87468" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="223" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="343" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="462" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="544" r_length="82" r_score="0.915"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.986" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85390" g_stop="85344" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="588" r_length="44" r_score="0.702"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E362954" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87619" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAG</genome_strand>
        <mrna_strand>AGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCATCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG........................................................................GCCTAAGTCGAAATAGA---GTTGTTGCGGATTCATCCTGGATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486973" ref_strand="+" ref_description="SGN-E486973 [cSTE-23-H6]">
      <seq>ctcaatagatccctccttcaaaaagctcttttcagggatcatcatcaaggaagcgtaatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactactttcagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtttttgctaacaagcaagatcttcctaatgcaatgaatgctgccgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagaggggctttacgagggacttgattggctttctacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatctggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88739" stop="85046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88439" g_stop="88405" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="205" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="276" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="396" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="515" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="596" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85346" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="640" r_length="44" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E486973" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88439" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGC</genome_strand>
        <mrna_strand>CTCAATAGATCCCTCCTTCAAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTAATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTTCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGGCTTTACGAGGGACTTGATTGGCTTTCT-ACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGAT-CTGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456765" ref_strand="+" ref_description="SGN-E456765 [cSTS-30-B3]">
      <seq>aggaatcgtaatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtttttgctaacaagcaagatcttcctaatgcaatgaatgctgccgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagaggggctttacgagggacttgattggctttctaacacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatctggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87925" stop="85046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87625" g_stop="87468" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="229" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="349" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="468" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="549" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85390" g_stop="85346" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="593" r_length="44" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E456765" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87625" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGC</genome_strand>
        <mrna_strand>AGGAATCGTAATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGGCTTTACGAGGGACTTGATTGGCTTTCTAAC-ACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGAT-CTGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456332" ref_strand="+" ref_description="SGN-E456332 [cSTS-29-O23]">
      <seq>ttcagccggcttttcgcccagagagaaatgccgaattctcatggttggaccttgatgccagctggtaagaccaccatattgtacaagctcaagctgggcgagatcgttactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagattcgtccattatggagacactatttccagaacactcagggtctcattttcgtggttgatagcaatgacagagatcgtgttgtggaggcaagagatgagttgcatacgatgttaaatgaggatgagcttcgggacgcagtgcttcttgtttttgctaacaaacaagatcttcccaatgcaatgaatgctgccgaaataactgataagcttggactgcactctctcaggcagcgtcactggtacattcagagcacctgtgcaacatctggagagggactttatgagggtcttgattggctttccaacaacattgctaacaagtcctaacgcactggaagagttctngcgggttgatactggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87891" stop="85146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87591" g_stop="87468" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.863"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="198" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="318" r_length="120" r_score="0.892"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.86"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="437" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="519" r_length="82" r_score="0.915"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85390" g_stop="85346" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="562" r_length="43" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E456332" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87591" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTCGGCTTTTCGCCAAGAAGGAAATG-CGCATTCTAATGGTTGG-TCTTGATG-CAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGC</genome_strand>
        <mrna_strand>TTCAGCCGGCTTTTCGCCCAGAGAGAAATGCCGAATTCTCATGGTTGGACCTTGATGCCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGCGAGATCGTTACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATTCGTCCATTATGGAGACACTATTTCCAGAACACTCAGGGTCTCATTTTCGTGGTTGATAGCAATGACAGAGATCGTGTTGTGGAGGCAAGAGATGAGTTGCATACGATGTTAAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGACGCAGTGCTTCTTGTTTTTGCTAACAAACAAGATCTTCCCAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCTCTCAGGCAGCGTCACTG..............................................................................GTACATTCAGAGCACCTGTGCAACATCTGGAGAGGGACTTTATGAGGGTCTTGATTGGCTTTCCAACAACATTGCTAACAAG........................................................................TCCTAACGCACTG--GAAGAGTTCTNGCGGGTTGATACTGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454502" ref_strand="+" ref_description="SGN-E454502 [cSTS-23-D19]">
      <seq>aatagatccctccttcaaaagctcttttcagggatcatcatcaaggaagcgtaatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtttttgctaacaagcaagatcttcctaatgcaatgaatgctgctgaaataactgataagcttggactgcactctctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagaggggctttacgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88736" stop="85048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88436" g_stop="88405" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="201" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="272" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="392" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="511" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="593" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85348" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="635" r_length="42" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E454502" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88436" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGAT</genome_strand>
        <mrna_strand>AATAGATCCCTCCTTC-AAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTAATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCTCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGGCTTTACGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGAT-CTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485675" ref_strand="+" ref_description="SGN-E485675 [cSTE-19-E13]">
      <seq>atagatccctccttcaaaaagctcttttcagggatcatcatcaaggaagcgtaatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactactttcagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtttttgctaacaagcaagatcttcctaatgcaatgaatgctgccgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagaggggctttacgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatgcagatttgttattgtgggttgatctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88735" stop="85048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88435" g_stop="88405" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="201" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="272" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="392" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="511" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="593" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85348" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="635" r_length="42" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E485675" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88435" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGAT</genome_strand>
        <mrna_strand>ATAGATCCCTCCTTCAAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTAATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTTCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGGCTTTACGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGAT-CTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483267" ref_strand="+" ref_description="SGN-E483267 [cSTE-8-N7]">
      <seq>ctcactagatccctctttcccaaactgttcttcagggatcattaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatccttatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaattgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtagtggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgctgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgataagcttggactccactccctcaggcagcgtcactggtacatccagagcgcttgtgcaacttctggcgagggactctacgaggggcttgattggctttctaacaacattgccaataaggcctaantccaagtagagttgttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87947" stop="85162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="205" r_length="170" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.82"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="276" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="396" r_length="120" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="515" r_length="119" r_score="0.941"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="597" r_length="82" r_score="0.915"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85390" g_stop="85365" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="623" r_length="26" r_score="0.577"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E483267" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGCAGATTTGTTATT</genome_strand>
        <mrna_strand>GGATCATTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTTATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATTGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGTGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGCTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGATAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCGCTTGTGCAACTTCTGGCGAGGGACTCTACGAGGGGCTTGATTGGCTTTCTAACAACATTGCCAATAAG........................................................................GCCTAANTCCAAGTAGAGTTGTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348425" ref_strand="+" ref_description="SGN-E348425 [cTOF-30-A9]">
      <seq>aggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcagncagcgtcactggtaggcactttgctagtgcttgtgagaatgatttgcttacttttgaggagtttctaagttggtttttttctgtatcaggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaggctttaaagtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88749" stop="85162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88449" g_stop="88405" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="215" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="286" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="406" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85463" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="685" r_length="279" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85390" g_stop="85377" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="699" r_length="14" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E348425" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88449" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85463"/>
          <exon e_start="85390" e_stop="85377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATGC</genome_strand>
        <mrna_strand>AGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGNCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAGG........................................................................CTTTAAAGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447816" ref_strand="+" ref_description="SGN-E447816 [cSTS-3-C9]">
      <seq>aggctctctcaatagctccctccttcaaaaagctcttttcagggatcctcctcaaggaagcataatggggctcaccttcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcatctggtaagaccaccatattgtacaagttgaagctgggagagaacgtgactacctattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcacttgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtttttgctaacaaacaagatcttcctaatgcaatgaatgctgccgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagaggggctttacgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88743" stop="85154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88446" g_stop="88405" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="213" r_length="171" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="285" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="405" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="524" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="606" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85378" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="619" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E447816" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88446" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTA-CTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCAC-TGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATG</genome_strand>
        <mrna_strand>AGGCTCTCTCAATAGCTCCCTCCTTCAAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCCTCCTCAAGGAAGCATAATGGGGCTCACCTTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCATCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGAACGTGACTACCTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGGCTTTACGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344699" ref_strand="+" ref_description="SGN-E344699 [cTOF-14-P6]">
      <seq>cctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88728" stop="85154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88428" g_stop="88405" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="194" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="265" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="385" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="504" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="586" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85390" g_stop="85378" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="599" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E344699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88428" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
          <exon e_start="85390" e_stop="85378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAGGTAATATAACAAAGCTGTGTTGTTGGAATATGTGCTGTCGTTGCCTCTAATTTTCTCAACCTCTTTTTACAGGCTTAAAGTGATG</genome_strand>
        <mrna_strand>CCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG........................................................................GCTTAAAGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255701" ref_strand="+" ref_description="SGN-E255701 [cLEG-36-K10]">
      <seq>ctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87947" stop="85162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="208" r_length="170" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="279" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="399" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="518" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="600" r_length="82" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E255701" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408321" ref_strand="+" ref_description="SGN-E408321 [PPI-10-D18]">
      <seq>gctttctctcactagatccctctttcccaaactgttcttcagggatcattaagaagaaagagaaatggggctgacattcaccaagcttttcagccggctgtttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaattgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtagtggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgctgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgataagcttggactccactccctcaggcagcgtcactggtacatccagagcgcttgtgcaacttctggcgagggactctacgaggggcttgattggctttctacaacattgccaataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87947" stop="85163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="212" r_length="170" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.82"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="283" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="403" r_length="120" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="522" r_length="119" r_score="0.941"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85463" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="603" r_length="81" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E408321" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG</genome_strand>
        <mrna_strand>GGATCATTAAGAAGAAAGAGAAATGGGGCTGACATTCACCAAGCTTTTCAGCCGGCTGTTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATTGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGTGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGCTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGATAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCGCTTGTGCAACTTCTGGCGAGGGACTCTACGAGGGGCTTGATTGGCTTTCT-ACAACATTGCCAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463037" ref_strand="+" ref_description="SGN-E463037 [cPRO-13-M12]">
      <seq>ctttctctcactagatccctctttcccaaactgttcttcagggatcattaagaagaaagagaaatggggctgacattcaccaagcttttcagccggctgtttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaattgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtagtggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgctgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgataagcttggactccactccctcaggcagcgtcactggtacatccagagcgcttgtgcaacttctggcgagggactctacgaggggcttgattggcttttctacaacatttgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87947" stop="85168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="211" r_length="170" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.82"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="282" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="402" r_length="120" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="521" r_length="119" r_score="0.941"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85467" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="600" r_length="79" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E463037" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACA-TTGCTAA</genome_strand>
        <mrna_strand>GGATCATTAAGAAGAAAGAGAAATGGGGCTGACATTCACCAAGCTTTTCAGCCGGCTGTTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATTGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGTGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGCTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGATAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCGCTTGTGCAACTTCTGGCGAGGGACTCTACGAGGGGCTTGATTGGCTTTTCTACAACATTTGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450511" ref_strand="+" ref_description="SGN-E450511 [cSTS-9-F23]">
      <seq>atcagcttcaccgtttgggatgtcgggggtcaggaccaagatccgtccattgtggaggcacctatttccagaacactcagggtctcatttttgtggttgatagcaatgaccagagaccgtgtaggggaggcaagaaatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgctgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgataagcttggactccactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagagggactctacgagggactagattggctttctaacaacattgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86720" stop="85167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86615" g_stop="86577" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="162" r_length="122" r_score="0.892"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.86"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="281" r_length="119" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85544" g_stop="85467" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="359" r_length="78" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E450511" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86615" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGA-CAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCA-CTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGA-TAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAA</genome_strand>
        <mrna_strand>ATCAGCTTCACCGTTTGGGATGTCGGGGGTCAGGACCAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACCTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACCAGAGACCGTGTAGGGGAGGCAAGAAATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGCTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGATAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGACTCTACGAGGGACTAGATTGGCTTTCTAACAACATTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297999" ref_strand="+" ref_description="SGN-E297999 [cLET-38-L12]">
      <seq>ctcaggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88752" stop="85169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88452" g_stop="88405" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="218" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="289" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="409" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="528" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85469" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="604" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E297999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88452" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCT</genome_strand>
        <mrna_strand>CTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353182" ref_strand="+" ref_description="SGN-E353182 [cTOS-14-E16]">
      <seq>aggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggactttgattggcttctaacaacattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88749" stop="85169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88449" g_stop="88405" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="215" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="286" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="406" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="525" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85469" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="601" r_length="76" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E353182" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88449" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGAC-TTGATTGGCTTTCTAACAACATTGCT</genome_strand>
        <mrna_strand>AGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTTGATTGGC-TTCTAACAACATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575290" ref_strand="+" ref_description="SGN-E575290 [34890]">
      <seq>ctctcggtgctttctctcactagatccctctttcccaaactgttcttcagggatcattaagaagaaagagaaatggggttgacattcaccaagcttttcagtcggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaattgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgctgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgataagcttggactccactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagagggactctacgagggactagattggctttctaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87947" stop="85174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="220" r_length="170" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.82"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="291" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="411" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="530" r_length="119" r_score="0.941"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85474" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="601" r_length="71" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E575290" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACA</genome_strand>
        <mrna_strand>GGATCATTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGTCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATTGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGCTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGATAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGACTCTACGAGGGACTAGATTGGCTTTCTAACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600530" ref_strand="+" ref_description="SGN-E600530 [53544]">
      <seq>gtcctctcgtgctttctctcactagatccctctttcccaaactgttcttcagggatcattaagaagaaagagaaatggggttgacattcaccaagcttttcagtcggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaattgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgctgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgataagcttggactccagtccctcaggcagcgtcactggtaaatccagagcacttgtgcaacttctggagagggactctacgagggactagattggctttctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87947" stop="85179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="222" r_length="170" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.82"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="293" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="413" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="532" r_length="119" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85479" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="598" r_length="66" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E600530" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAA</genome_strand>
        <mrna_strand>GGATCATTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGTCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATTGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGCTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGATAAGCTTGGACTCCAGTCCCTCAGGCAGCGTCACTG..............................................................................GTAAATCCAGAGCACTTGTGCAACTTCTGGAGAGGGACTCTACGAGGGACTAGATTGGCTTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260558" ref_strand="+" ref_description="SGN-E260558 [cLEG-54-H5]">
      <seq>ctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87947" stop="85181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="208" r_length="170" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="279" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="399" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="518" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85481" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="582" r_length="64" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E260558" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCT</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337638" ref_strand="+" ref_description="SGN-E337638 [cTOE-11-H18]">
      <seq>gaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87924" stop="85184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87624" g_stop="87468" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="228" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="348" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="467" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85484" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="528" r_length="61" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E337638" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87624" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTT</genome_strand>
        <mrna_strand>GAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272682" ref_strand="+" ref_description="SGN-E272682 [cLEM-21-K21]">
      <seq>ggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87937" stop="85188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="241" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="361" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="480" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85488" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="537" r_length="57" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E272682" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTG</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303478" ref_strand="+" ref_description="SGN-E303478 [cLEX-2-O1]">
      <seq>tagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcaaggggctttatgagggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88734" stop="85195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88434" g_stop="88405" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="200" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="271" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="391" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="510" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85495" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="560" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E303478" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88434" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGAC</genome_strand>
        <mrna_strand>TAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCAAGGGGCTTTATGAGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367162" ref_strand="+" ref_description="SGN-E367162 [cLPT-5-H14]">
      <seq>tcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattatacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaagcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggtgaggggcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88726" stop="85203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88426" g_stop="88405" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="192" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="263" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="383" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="502" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85503" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="544" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E367162" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88426" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTA</genome_strand>
        <mrna_strand>TCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTATACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAAGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGTGAGGGGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561189" ref_strand="+" ref_description="SGN-E561189 [17142]">
      <seq>gtttctttctttcttttagagccctcttccataatcatctttcagggnatcaccaacaaggagaaatggggctgacattcaccaagcttttcagccggcttttcgccaagaaagaaatgcgaattctcatggttggacttgatgcagctggtaagaccaccatattgtacaagctcaagctgggcgagatcgttactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagattcgtccattatggagacactatttccagaacactcagggtctcattttcgtggttgatagcaatgacagagatcgtgttgtggaggcaagagatgagttgcataggatgttaaatgaggatgagcttcgggacgcagtgcttcttgtttttgctaacaaacaagatcttcccaatgcaatgaatgctgccgaaataactgataagcttggactgcactctctcaggcagcgtcactggtacattcagagcacctgtgcaacatctggagagggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87932" stop="85320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="213" r_length="167" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="284" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="404" r_length="120" r_score="0.900"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="523" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85506" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="562" r_length="39" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E561189" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCT</genome_strand>
        <mrna_strand>GNATCACCAACAAGGA---GAAATGGGGCTGACATTCACCAAGCTTTTCAGCCGGCTTTTCGCCAAGAAAGAAATGCGAATTCTCATGGTTGGACTTGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGCGAGATCGTTACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATTCGTCCATTATGGAGACACTATTTCCAGAACACTCAGGGTCTCATTTTCGTGGTTGATAGCAATGACAGAGATCGTGTTGTGGAGGCAAGAGATGAGTTGCATAGGATGTTAAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGACGCAGTGCTTCTTGTTTTTGCTAACAAACAAGATCTTCCCAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCTCTCAGGCAGCGTCACTG..............................................................................GTACATTCAGAGCACCTGTGCAACATCTGGAGAGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459679" ref_strand="+" ref_description="SGN-E459679 [cPRO-28-J7]">
      <seq>ctcaggtttctctctcaatagatccctccttcaaaaagctcttttcagggatcatcatcaaggaagcgtaatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtttttgctaacaagcaagatcttcctaatgcaatgaatgctgccgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88752" stop="85215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88452" g_stop="88405" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="218" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="289" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="409" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="528" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85544" g_stop="85515" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="558" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E459679" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88452" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGG</genome_strand>
        <mrna_strand>CTCAGGTTTCTCTCTCAATAGATCCCTCCTTCAAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTAATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290015" ref_strand="+" ref_description="SGN-E290015 [cLET-5-E23]">
      <seq>gctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87947" stop="85216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="213" r_length="170" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="284" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="404" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="523" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85516" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="552" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E290015" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTG</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAAAGCACTTGTGCAACTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484207" ref_strand="+" ref_description="SGN-E484207 [cSTE-12-B5]">
      <seq>ttggtttcaatgtggaaactgttgaaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaggaacaagatccgtccattgtggaggcactatttccagaaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgctgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgataagcttggactccactccctcagcagcgtcactggtacatccagagcacttgtgcaacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86948" stop="85217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="76" r_length="73" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="197" r_length="121" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="315" r_length="118" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85544" g_stop="85517" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="343" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E484207" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAATGTGGAGACTGTTG-AGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGG-ACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAG-AACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCT</genome_strand>
        <mrna_strand>GTTTCAATGTGGAAACTGTTGAAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAGGAACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGCTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGATAAGCTTGGACTCCACTCCCTCA-GCAGCGTCACTG..............................................................................GTACATCCAGAGCACTTGTGCAACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208966" ref_strand="+" ref_description="SGN-E208966 [cLEC-38-C22]">
      <seq>tcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87947" stop="85320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="217" r_length="170" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="288" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="408" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="527" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85525" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="547" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E208966" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTG</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAAAGCACTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206440" ref_strand="+" ref_description="SGN-E206440 [cLEC-23-K21]">
      <seq>tttctctcactagatccctctttgcccaagctgttcttcggggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87938" stop="85320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="211" r_length="170" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="282" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="402" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="521" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85528" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="538" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E206440" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTT</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAAAGCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266002" ref_strand="+" ref_description="SGN-E266002 [cLEI-6-D8]">
      <seq>ctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87947" stop="85320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="192" r_length="170" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="263" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="383" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="502" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78">
            <donor d_prob="0.281" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85544" g_stop="85528" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="519" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E266002" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
          <exon e_start="85544" e_stop="85528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTT</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG..............................................................................GTACATCCAAAGCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442217" ref_strand="+" ref_description="SGN-E442217 [cSTA-32-I10]">
      <seq>cccgggctgcacgaattcggcccgaggaaaagctcttttcagggatcatcatcaaggaagcataatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagttgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcaggggctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtttttgctaacaaacaagatcttcctaatgcaatgaatgctgccgaaataactgataagcttggactgcactccctcaggcagcgtcactggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88719" stop="85320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="212" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="283" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="403" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85620" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="525" r_length="122" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E442217" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTA</genome_strand>
        <mrna_strand>GGATCATCATCAAGGAAGCATAATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGTTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGGCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCCGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271764" ref_strand="+" ref_description="SGN-E271764 [cLEM-8-E9]">
      <seq>gcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87920" stop="85323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87620" g_stop="87468" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="224" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="344" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="463" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E271764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87620" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG</genome_strand>
        <mrna_strand>GCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247878" ref_strand="+" ref_description="SGN-E247878 [cLEF-47-I18]">
      <seq>tcaggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88751" stop="85339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88451" g_stop="88405" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="217" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="288" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="408" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85639" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="511" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E247878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88451" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCC</genome_strand>
        <mrna_strand>TCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293397" ref_strand="+" ref_description="SGN-E293397 [cLET-18-N7]">
      <seq>aggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgggcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88749" stop="85339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88449" g_stop="88405" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="215" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="286" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="406" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85639" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="509" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E293397" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88449" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCC</genome_strand>
        <mrna_strand>AGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGGGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239933" ref_strand="+" ref_description="SGN-E239933 [cLED-29-K8]">
      <seq>caagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttccggatgctgcgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccaactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87874" stop="85339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87574" g_stop="87468" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="178" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="298" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85639" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="402" r_length="104" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E239933" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87574" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGC-ACTCCC</genome_strand>
        <mrna_strand>CAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCCGGATGCTGCGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCAACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204728" ref_strand="+" ref_description="SGN-E204728 [cLEC-14-F12]">
      <seq>ggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttnctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87868" stop="85339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87568" g_stop="87468" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="172" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="292" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85639" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="395" r_length="103" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E204728" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87568" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCC</genome_strand>
        <mrna_strand>GGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTNCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231291" ref_strand="+" ref_description="SGN-E231291 [cLED-5-L14]">
      <seq>ggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87884" stop="85341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87584" g_stop="87468" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="188" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="308" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85641" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="409" r_length="101" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E231291" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87584" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTC</genome_strand>
        <mrna_strand>GGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401222" ref_strand="+" ref_description="SGN-E401222 [PPC-3-O14]">
      <seq>gtgctttctctcactagatccctctttcccaaactgttcttcagggatcattaagaagaaagagaaatggggttgacattcaccaagcttttcagtcggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaattgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgctgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgataagcttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87947" stop="85348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="214" r_length="170" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.82"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="285" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="405" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85648" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="499" r_length="94" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E401222" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGAC</genome_strand>
        <mrna_strand>GGATCATTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGTCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATTGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGCTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGATAAGCTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471419" ref_strand="+" ref_description="SGN-E471419 [cSTB-23-P22]">
      <seq>agatccctctttcccaaactgttcttcagggatcattaagaagaaagagaaatggggctgacattcaccaagcttttcagccggctgtttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaattgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtagtggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgctgcttgtttttgctaacaaacaagatcttnctaatgcaatgaatgctgctgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87947" stop="85364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="199" r_length="170" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.82"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="270" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="390" r_length="120" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="468" r_length="78" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E471419" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATA</genome_strand>
        <mrna_strand>GGATCATTAAGAAGAAAGAGAAATGGGGCTGACATTCACCAAGCTTTTCAGCCGGCTGTTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATTGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGTGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGCTGCTTGTTTTTGCTAACAAACAAGATCTTNCTAATGCAATGAATGCTGCTGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296153" ref_strand="+" ref_description="SGN-E296153 [cLET-24-F12]">
      <seq>ttcagcgttaatctcaggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88764" stop="85374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88464" g_stop="88405" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="230" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="301" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="421" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85674" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="489" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E296153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88464" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCGTTAATCTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGC</genome_strand>
        <mrna_strand>TTCAGCGTTAATCTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571586" ref_strand="+" ref_description="SGN-E571586 [14824]">
      <seq>ctcaggtttctctctcaatagatccctccttcaaaaagctcttttcagggatcatcatcaaggaagcgtaatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagttttttgctaacaaggcaagatcttcctaatgcaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88752" stop="85401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88452" g_stop="88405" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="218" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="289" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="409" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85676" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="477" r_length="68" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E571586" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88452" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAG-TATTTGCTAACAA-ACAAGATCTTCCTAACGCAATGAAT</genome_strand>
        <mrna_strand>CTCAGGTTTCTCTCTCAATAGATCCCTCCTTCAAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTAATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTTTTTTGCTAACAAGGCAAGATCTTCCTAATGCAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291250" ref_strand="+" ref_description="SGN-E291250 [cLET-2-B12]">
      <seq>ctcaggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgcgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgcggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcacgacaagatccgtccattgcggaggcactacttacagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88752" stop="85393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88452" g_stop="88405" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="218" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="289" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="409" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85693" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="458" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E291250" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88452" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATC</genome_strand>
        <mrna_strand>CTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGCGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGCGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCACGACAAG..............................................................................................................................................................ATCCGTCCATTGCGGAGGCACTACTTACAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335575" ref_strand="+" ref_description="SGN-E335575 [cTOE-2-J12]">
      <seq>tcaggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88751" stop="85406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88451" g_stop="88405" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="217" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="288" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="408" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85706" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="444" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E335575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88451" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
          <exon e_start="85741" e_stop="85706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAGGTAATGATCCTTCTCCACACTTTATGCAGGGCTACTATTGTGTCCAGAGGTAGCATCTTAAACATTTGAGCTGTATAGCTTTGAATGTATGTGCTTATTTTGGGTTCAAGTAGAGATGCTCGATTGTAGATGACAAAATTTTCCTGAAACATCATTTTTTTGTTCAACAAATAATGGACTAATATAAGTTGAACTGATTTATCAACTTGTTTCCTTCTAGTATTTCAGTTTCAGCATTAATAAGTTGGTAATATATCTAGAGCCTAGAGGTCATTCTGAATAGTTGAATTTTTTCACTGTACTTGCATCACTACATTGCATGTTGTATAAGAACACAGCAAAGTAGGCCAGGGGCAGTAGGGAAGGTAGCAATCTATGAGAAAACCACCTACTTTGCTACTTACAGATCATACCTGCCATTATTCTCTATGTTGTGATTTTGTAGCCACATCCATTTATCATTATTTATTAGATGGCAAGTGCAAGATAAACTTAGGGATCTTTCAATTAAACTTTCTGGAGTGACCTGTGGACTTATTTATTTTTGTGTGGCCCAGGATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCT</genome_strand>
        <mrna_strand>TCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257870" ref_strand="+" ref_description="SGN-E257870 [cLEG-39-L21]">
      <seq>tttcagccggctatttgccaagaaggaaatgcgcatcctcatgggtggactctatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87891" stop="85999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87592" g_stop="87468" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="196" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86299" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="316" r_length="120" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E257870" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87592" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG</genome_strand>
        <mrna_strand>TTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGGTGGACTCTATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359985" ref_strand="+" ref_description="SGN-E359985 [cLPP-9-I12]">
      <seq>tcttctttcagtgctctttaacaaagggatcaccaacaagaaggagaaatggggctgtcattcaccaagcttttcagccggcttttcgccaagaaagaaatgcgaattctcatggttggacttgatgcagctggtaagaccaccatattgtacaagctcaagctgggcgagatcgttactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagattcgtccattatggaggcactatttccagaacactcagggtctcattttcgtggttgatagcaatgacagagatcgtgttgtggaggcaagagatgagttgcataggatgttaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87939" stop="86000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="196" r_length="170" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="267" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86418" g_stop="86300" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="386" r_length="119" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E359985" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGA</genome_strand>
        <mrna_strand>GGATCACCAACAAGAAGGAGAAATGGGGCTGTCATTCACCAAGCTTTTCAGCCGGCTTTTCGCCAAGAAAGAAATGCGAATTCTCATGGTTGGACTTGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGCGAGATCGTTACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG..............................................................................................................................................................ATTCGTCCATTATGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTCGTGGTTGATAGCAATGACAGAGATCGTGTTGTGGAGGCAAGAGATGAGTTGCATAGGATGTTAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364458" ref_strand="+" ref_description="SGN-E364458 [cLPP-18-C13]">
      <seq>tctctcaatatatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattatacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88742" stop="86067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88442" g_stop="88405" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="208" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="279" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86418" g_stop="86367" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="331" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E364458" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88442" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
          <exon e_start="86418" e_stop="86367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAGGTATAACCTTTTTCCCCCTAAGGCTGTATGTTCTGCATTGGTCTGGCCCTTGTGTATATATACTACATTTGCCGAAAATAAGGCTGACCACTCCGCATGGAATGAAGCTTTTGAACAATTATCTGGTAGTTCTAACTTCATTTATTCACTTTTGGCAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTG</genome_strand>
        <mrna_strand>TCTCTCAATATATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTATACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG..............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203474" ref_strand="+" ref_description="SGN-E203474 [cLEC-15-D17]">
      <seq>tctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88742" stop="86275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88442" g_stop="88405" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="208" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86577" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="279" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E203474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88442" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG</genome_strand>
        <mrna_strand>TCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541094" ref_strand="+" ref_description="SGN-E541094 [TUS-61-L8]">
      <seq>caggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccnattggtttcaatgtggagactgttgagtacaagaacatcagcnttcactgggtttgggaatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88750" stop="86303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88450" g_stop="88405" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="217" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820">
            <donor d_prob="0.477" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86647" g_stop="86592" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="277" r_length="60" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E541094" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88450" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
          <exon e_start="86647" e_stop="86592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACC-ATTGGTATGTAGATTGTTGCATACAGCAGCAAAGTTCTTGCCATAATGATCTCTGCATTTACAATTTGGTTGTAAGGCATGAAACATGCCTTTTGCCTGTTCCCTCCCAATATGCACTGATTAGGCATAGCATTTATACTTTATTATTTTGACTTGGTCTCTGGTTGTGTTTGTTTGGTATGTTGCATGATATGTATTAGTGCCAGACCTTTATGGTGAGGGTTGACTTATGTTGTACAGTTTCTTTTTTTTATTGGTAAACCACATCTACCCACCCTCGATCCCTCTCCCTAGGGTCCCCACTTTCTTGTGATGACTTGAACCCCCAACTGCCGCTGGAGGTGGAGCAAGCTTTTCACTTGAACTGCCCTGTCCTTGCGCTATGTGCATTTCATCACTCAAAAGATTACCTACTTGTTATTTTGATAAATAAAGAATGTGAATGGTGGTAGGCAGTATTATAAATCCTTCTTCCTGGTGTCGGTTGCTGCAAATGCTTATTTGGTTATATCCTGTCCCTCCTACTGTCTGTCTCTCCCTGCTTTGGTTCTTTACTGTGAGTAAGCTTAGCAAAGTGGTGGTCTTAAACTTCTCAAGGTTTATCTGTGACTGTTTGTCATGCAAATTATAATGTTCTGTATGATAATTTATATGATACTTATTATTAGCTAATGGCATTTGCTATATCACTGTATTTTCTTGGTGACTATTGAAAAGCTAATTTGTTCCAAGAGAGTCTTGTCAGCTTTTGGAAAATGTTCACTGATATGCGAATAATACCTTACTGCTTCAGTGAGCTATTATTAATAATCGACAATTTTCAGGTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGC-TTCACT--GTTTGGG-ATGTC</genome_strand>
        <mrna_strand>CAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCNATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCNTTCACTGGGTTTGGGAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239976" ref_strand="+" ref_description="SGN-E239976 [cLED-29-L21]">
      <seq>ttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88745" stop="87156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88445" g_stop="88405" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="211" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E239976" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88445" e_stop="88405"/>
          <exon e_start="87637" e_stop="87468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG</genome_strand>
        <mrna_strand>TTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293838" ref_strand="+" ref_description="SGN-E293838 [cLET-37-E10]">
      <seq>aggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88749" stop="87224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88449" g_stop="88405" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87524" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="159" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E293838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88449" e_stop="88405"/>
          <exon e_start="87637" e_stop="87524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAGGTATATCTTTATATTTTCGTTCATTTTTCTCTTCAATTTCATGCATCTATAGTAACATTTTCGAGAATTTTCTCTATTGAAATAGTTTTTTGTATGGATTTGAGGTTGATTTTAGGCTAGGATGTGTTTTGTGCTTGATTAATGTTGAAATTCAGCTTCTGTGGAGGATTTTTAGCTGCATTTACGGTGCGCGGCTGGTATCTGTGTGATTTGTGGTTTTCCTTATTAGATTTATGGATTTGTAGCGGCTGATGCGTTTTTTTGTGTGTAAATTTGTGTTTTTATGCTATGATCTGAAGAATGAGTTGTTGTACTGCTTCCGTATATAGAGAATTGTTTTGTGTGGATTTGAGAATGTCTCCAGTTGATTTTATGCCAGAATTTATTCAATGTCATGTTGAAATTCAATTTTGTGGAGATGTTTTGCTACATTTGATTTGAGGTTATGTATCTCAGATTAAGCGGTTGGTAGCTGCAGATGTGTTCCTTCTTTCCTTTTTGGTGTTCTCTTTGTGTTTCTTTAGCTGAGAGACATTGTACTGCTTCGATCTCTGTGAAAATTGTAATGTATAGTGGTTTGTATCATGAAAATTTTGAATTTTAGCTTTAAAAAGTTGATTTAGCTAGTCAATGTGATCGTTTTGCTTTGTCATTCAGATCCATGTTAGAATAGCTGCAACTTGGTATGAATCAGCATATGGATCTGAATTTTGAAGGCAATTATGGATTTCAGCTGTATGATTTAATCGTGTAATTTTGTGGTGTAGGGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGAC</genome_strand>
        <mrna_strand>AGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622561" ref_strand="+" ref_description="SGN-E622561 [72929]">
      <seq>atgtcaagaatgtcagagaaggacctcaacactatgaggaggagagtggcatcagttgcaaatcatttattgccaattcctttactcaaaatgttgtttcttcaattgggtcttccaattgtagctcctcttctatgaatgataattaccataaaattcatggtgaagtcccaaatcatgaacctgtttggagacttattccttctgatgatgaatctggcaaagagtttactgatattatttatgagaaagctgttggtgaacccattgctaagataaccatcaatagaccggatagaagaaatgctttccgacctcataccatcaaggagcttattcgcgcatttaatgatgccagggatgatggttcagtgggagtcatcatcctcacaggaaagggtacaaaggcgttttgtagtggtggtgatcaggcattgagaagtaaggatggttatgctgattttgaaagttttggtcgcctcaatgttttagatttacaggtgcaaattcgtcgtctaccaaaaccagtaattgcaatggttgcaggttatgctgttggtggaggacacattttgcatatggtttgtgatctaacgattgcagcagacaatgctatatttggtcagactggcccaaaggtaggaagtttcgatgctggttatggaagttcaattatgtcccgtttggttggaccgaaaaaagctcgtgaaatgtggtttttgacaaggttctacacaggctctgaaagcagagaaaatggggacttgtgaatactgttgttccattagataagttggaggcagaaaacactaaaaggtggttgcagagaagatctttaaagaacatagtcctaacaaggaaaacgagtggttaaaaattccagtctcccaaagcagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93265" stop="89902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92969" g_stop="92694" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92693" i_stop="91895" i_length="799">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91894" g_stop="91772" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="398" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91771" i_stop="91351" i_length="421">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91350" g_stop="91249" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="500" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91248" i_stop="91085" i_length="164">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91084" g_stop="91046" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="539" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91045" i_stop="90942" i_length="104">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.878" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90941" g_stop="90843" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="638" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90842" i_stop="90534" i_length="309">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90533" g_stop="90486" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="686" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90485" i_stop="90307" i_length="179">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90306" g_stop="90211" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="784" r_length="98" r_score="0.906"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="90210" i_stop="90011" i_length="200">
            <donor d_prob="0.937" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="90010" g_stop="89982" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="814" r_length="30" r_score="0.828"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E622561" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92969" e_stop="92694"/>
          <exon e_start="91894" e_stop="91772"/>
          <exon e_start="91350" e_stop="91249"/>
          <exon e_start="91084" e_stop="91046"/>
          <exon e_start="90941" e_stop="90843"/>
          <exon e_start="90533" e_stop="90486"/>
          <exon e_start="90306" e_stop="90211"/>
          <exon e_start="90010" e_stop="89982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAGGTTTTCTTCTTACAATTCTTTACCCTCTTATGTGGAATTCTTCAAAAAAAATTCCAACTTAGTAGTACCTCTGTTCTAATTCATGTGCTTCATTGTTCCAATTTTTGTGGCCTTGTTTGAATTTGAAGAGACTTTGAGAAAGGAAGAAAGACTTTTGGAAACTTGTTGACTTAACACTTCATAATAATTGAGTGGCTATTTAAGTTTCTCATTAGTGGTAAAAGAGGAAGTTTAAGCTAAATTGTTTTTAAATTTAGAAAGTTGTCATTCTTTTTTGAACAAACTAAAACGTAAATGTTGTTGGAACAAAGGGAGTATTACTTTTAGATGCCTGGCCGTTACTCAAAGCTTGAGTTTAGTCTAGTGAAAAAACCATGTCTTGAGCTCCATGGAGTTTATGTGATGAATCACAATTTGCCTATAACAAAGACTTCAAGGATGAATGTTTGCATTTATAACATGATAATGGATAACAAATTGCTAAATGGTAGATGATACTGTATTTCTCTGCTATATGTAAAGCATATTGCATTAGATCGATGACCCTTTAAAAAAAATTCCAATGACTTGCAATGCCAGTGACTGTAGAAGGAAAAATCAAATATGATTAAAGCACACGCGTTTCTCAATGATTATCAGCAACCTTAGGTTCTTGCTTAGCAGCTACTAGTAACACGGTTTGAAGCTTCTTTCTTGCTGTTAGTACTTACAGGTGACCTGAATTAATAATGTCAGGAACTCAGAAGCTGGAAATCTGGAGCTTTAGTTTTAAGTCATATTGTTTTCTTTCCTCTTGCAGATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGGAAGGTAAGTTCCCAACAGAAATATCAGATCATGTACAAAGTAGAGAAGTTATGGAATTCAATGTAGGTGTTGTGAACATTAGGCCATGTTATAAGTTTCTCTTACTAGCAAATATTCACTTAAAGCACCATGTCTTAATACTTGATGAAGGAATTGAATGACTGAATTTTAATGCACGCCTTTCCTTTTGTACTAACACCGAACCAGCTTGTTATTGAGCTCGTATTGGTCCTGTTCCATTGAAGAGTATCTCTAAGAAAAATGAGATGTCGTAGGAGTATAAATGTAGTTGGAATTTGTTGTAGATTAGAACTGAGCTCTTGTGGAGATGGTTTCTAGATATCTTTGTATAGTGAGTTAACTTCAGTAGATTGTATCATTTGGCTGTATTGCATGCATTGTTCTCAAGTATGACTTGATGCAGGGTACAAAGGCGTTTTGTAGTGGTGGTGATCAGGCATTGAGAAGTAAGGATGGTTATGCTGATTTTGAAAGTTTTGGTCGCCTTAATGTTTTAGATTTACAGGTACGTAGAGTAATCTGTCATGTTCTTTGAAGTCGTTTCAGACGACTTTTTGCCTTAAGATAGGTAGTTCCTTCAAACTGATATAACATTTTGATGTGTCTAGTTCTTAGCTATAGTTTGGTGTACTCATTAACTTTACCTTGTTCTTCTTCTTTTATACATAGGTGCAAATTCGTCGTCTACCAAAACCAGTAATTGCAATGGTAAGACTCTTTTCTTCCTTTTGTTAAGTGCTTTAAGTAGGCATCCCAGTATATCACGTAATTCAATTATCTGAAATATCTCTTTTCCTTTTGTTGCAACTAAGGTTGCAGGTTACGCTGTTGGTGGAGGACACATTTTACATATGGTTTGCGATCTAACGATTGCAGCAGACAATGCTATATTTGGTCAGACTGGCCCAAAGGTGCTTTCATCAGTGACATCTTTTTACACGTGTACTCAAAAACAACGTTTTTATTAGTATATTAGTAAATGAGCATATATTTCAAGTACCTGTAGAGCATGTCTTTAGGTACTGTTACGGAATAAAGTGATGTTCTATGTTGATCGAATATCTCATCTTATTTACATAGTCTATTATTGTTCTTATTCTATAGCCTTCTTGACTATACAATTATTCTTGTTCCTTTGTGTCTGGACAAAGAATCTGAGTAAAAGTTAAATTTGATGCCATACAAGGATTCATGAAATCTGATTCTTTTGCAAATTGCAGGTAGGAAGTTTCGATGCTGGTTATGGAAGTTCAATTATGTCCCGTCTGGTGAGTGTCTTGTCTTGTTTCTTTTCGTTAAAATAGAAACTCATTTGTGGTTCTCTTTTCATGTTTAATTGAACTTGTTGATCAAATATTGGTGTAAAAACAAGCAATGTACATCTGATTTATAATTAAGTACTATAAATCTCCGAATATATTGGTTCAATCTTCTGCTGACTGAACAGGTTGGACCAAAGAAAGCTCGTGAAATGTGGTTTTTAACAAGGTTCTACACAGCTTCTG-AAGCAGAGAAAAT-GGGACTTGTGAATACTGTTGTTCCAGTGAGTATATCGACTCACTCTACTTCCCTATAAGAGCTAATGTTCGTGTAACAACCAAATAGAATCAAGAAAAAAATTAGCATTCCAATTTCATATACTTTCTGGTTTACAAGAATGCTCATTAGTTAACCTTAGGAAACGGTTTTAATCCCTCAGCTATATGAAATGTTTCTAATGTAATGTGTTGTTTCATCTTTTAGGTAGATAAGTTGGAAGCAG-AAACAATAAA</genome_strand>
        <mrna_strand>ATGTCAAGAATGTCAGAGAAGGACCTCAACACTATGAGGAGGAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATTCCTTTA-CTCAAAATGTTGTTTCTTCAATTGGGTCTTCCAATTGTAGCTCCTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAAGAGTTTACTGATATTATTTATGAGAAAGCTGTTGGTGAACCCATTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCATACCATCAAGGAGCTTATTCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAAAGGCGTTTTGTAGTGGTGGTGATCAGGCATTGAGAAGTAAGGATGGTTATGCTGATTTTGAAAGTTTTGGTCGCCTCAATGTTTTAGATTTACAG....................................................................................................................................................................GTGCAAATTCGTCGTCTACCAAAACCAGTAATTGCAATG........................................................................................................GTTGCAGGTTATGCTGTTGGTGGAGGACACATTTTGCATATGGTTTGTGATCTAACGATTGCAGCAGACAATGCTATATTTGGTCAGACTGGCCCAAAG.....................................................................................................................................................................................................................................................................................................................GTAGGAAGTTTCGATGCTGGTTATGGAAGTTCAATTATGTCCCGTTTG...................................................................................................................................................................................GTTGGACCGAAAAAAGCTCGTGAAATGTGGTTTTTGACAAGGTTCTACACAGGCTCTGAAAGCAGAGAAAATGGGGACTTGTGAATACTGTTGTTCCA........................................................................................................................................................................................................TTAGATAAGTTGGAGGCAGAAAACACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731267" ref_strand="+" ref_description="SGN-E731267 [LA26CE08]">
      <seq>ggagaagagtggcatcagttgcaaatcatttattgccaatccctttagctcaaaatgttttttcttcaattggcttttccaattgtagctcttcttctatgaatgataattaccataaaattcatggtgaagtcccaaatcatgaacctgtttggagacttattccttctgatgatgaatctggcaaggacttcactgatatcatatatgagaaagctgttggtgaacccattgctaagataaccatcaatagaccggatagaagaaatgctttccgacctcacaccatcaaggagcttatccgcgcatttaatgatgccagggatgatggttcagtgggagtcatcatcctcacagggaagggtacaaaggcgttttgtagtggtggtgatcaggcattgagaagtaaggatggttatgctgattttgaaagttttggtcgccttaatgttttagatttacaggtgcaaattcgtcgtctaccaaaaccagtaattgcaatggttgcaggttacgctgttggtggaggacacattttacatatggtttgcgatctaacgattgcagcagacaatgctatatttggtcagactggcccaaaggtaggaagtttcgatgctggttatggaagttcaattatgtcccgtctggttggaccaaagaaagctcgtgaaatgtggtttttaacaaggttctacacagcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93232" stop="89949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92932" g_stop="92694" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92693" i_stop="91895" i_length="799">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91894" g_stop="91772" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="362" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91771" i_stop="91351" i_length="421">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91350" g_stop="91249" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="464" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91248" i_stop="91085" i_length="164">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91084" g_stop="91046" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="503" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91045" i_stop="90942" i_length="104">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90941" g_stop="90843" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="602" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90842" i_stop="90534" i_length="309">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90533" g_stop="90486" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="650" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90485" i_stop="90307" i_length="179">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90306" g_stop="90249" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="708" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E731267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92932" e_stop="92694"/>
          <exon e_start="91894" e_stop="91772"/>
          <exon e_start="91350" e_stop="91249"/>
          <exon e_start="91084" e_stop="91046"/>
          <exon e_start="90941" e_stop="90843"/>
          <exon e_start="90533" e_stop="90486"/>
          <exon e_start="90306" e_stop="90249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAGGTTTTCTTCTTACAATTCTTTACCCTCTTATGTGGAATTCTTCAAAAAAAATTCCAACTTAGTAGTACCTCTGTTCTAATTCATGTGCTTCATTGTTCCAATTTTTGTGGCCTTGTTTGAATTTGAAGAGACTTTGAGAAAGGAAGAAAGACTTTTGGAAACTTGTTGACTTAACACTTCATAATAATTGAGTGGCTATTTAAGTTTCTCATTAGTGGTAAAAGAGGAAGTTTAAGCTAAATTGTTTTTAAATTTAGAAAGTTGTCATTCTTTTTTGAACAAACTAAAACGTAAATGTTGTTGGAACAAAGGGAGTATTACTTTTAGATGCCTGGCCGTTACTCAAAGCTTGAGTTTAGTCTAGTGAAAAAACCATGTCTTGAGCTCCATGGAGTTTATGTGATGAATCACAATTTGCCTATAACAAAGACTTCAAGGATGAATGTTTGCATTTATAACATGATAATGGATAACAAATTGCTAAATGGTAGATGATACTGTATTTCTCTGCTATATGTAAAGCATATTGCATTAGATCGATGACCCTTTAAAAAAAATTCCAATGACTTGCAATGCCAGTGACTGTAGAAGGAAAAATCAAATATGATTAAAGCACACGCGTTTCTCAATGATTATCAGCAACCTTAGGTTCTTGCTTAGCAGCTACTAGTAACACGGTTTGAAGCTTCTTTCTTGCTGTTAGTACTTACAGGTGACCTGAATTAATAATGTCAGGAACTCAGAAGCTGGAAATCTGGAGCTTTAGTTTTAAGTCATATTGTTTTCTTTCCTCTTGCAGATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGGAAGGTAAGTTCCCAACAGAAATATCAGATCATGTACAAAGTAGAGAAGTTATGGAATTCAATGTAGGTGTTGTGAACATTAGGCCATGTTATAAGTTTCTCTTACTAGCAAATATTCACTTAAAGCACCATGTCTTAATACTTGATGAAGGAATTGAATGACTGAATTTTAATGCACGCCTTTCCTTTTGTACTAACACCGAACCAGCTTGTTATTGAGCTCGTATTGGTCCTGTTCCATTGAAGAGTATCTCTAAGAAAAATGAGATGTCGTAGGAGTATAAATGTAGTTGGAATTTGTTGTAGATTAGAACTGAGCTCTTGTGGAGATGGTTTCTAGATATCTTTGTATAGTGAGTTAACTTCAGTAGATTGTATCATTTGGCTGTATTGCATGCATTGTTCTCAAGTATGACTTGATGCAGGGTACAAAGGCGTTTTGTAGTGGTGGTGATCAGGCATTGAGAAGTAAGGATGGTTATGCTGATTTTGAAAGTTTTGGTCGCCTTAATGTTTTAGATTTACAGGTACGTAGAGTAATCTGTCATGTTCTTTGAAGTCGTTTCAGACGACTTTTTGCCTTAAGATAGGTAGTTCCTTCAAACTGATATAACATTTTGATGTGTCTAGTTCTTAGCTATAGTTTGGTGTACTCATTAACTTTACCTTGTTCTTCTTCTTTTATACATAGGTGCAAATTCGTCGTCTACCAAAACCAGTAATTGCAATGGTAAGACTCTTTTCTTCCTTTTGTTAAGTGCTTTAAGTAGGCATCCCAGTATATCACGTAATTCAATTATCTGAAATATCTCTTTTCCTTTTGTTGCAACTAAGGTTGCAGGTTACGCTGTTGGTGGAGGACACATTTTACATATGGTTTGCGATCTAACGATTGCAGCAGACAATGCTATATTTGGTCAGACTGGCCCAAAGGTGCTTTCATCAGTGACATCTTTTTACACGTGTACTCAAAAACAACGTTTTTATTAGTATATTAGTAAATGAGCATATATTTCAAGTACCTGTAGAGCATGTCTTTAGGTACTGTTACGGAATAAAGTGATGTTCTATGTTGATCGAATATCTCATCTTATTTACATAGTCTATTATTGTTCTTATTCTATAGCCTTCTTGACTATACAATTATTCTTGTTCCTTTGTGTCTGGACAAAGAATCTGAGTAAAAGTTAAATTTGATGCCATACAAGGATTCATGAAATCTGATTCTTTTGCAAATTGCAGGTAGGAAGTTTCGATGCTGGTTATGGAAGTTCAATTATGTCCCGTCTGGTGAGTGTCTTGTCTTGTTTCTTTTCGTTAAAATAGAAACTCATTTGTGGTTCTCTTTTCATGTTTAATTGAACTTGTTGATCAAATATTGGTGTAAAAACAAGCAATGTACATCTGATTTATAATTAAGTACTATAAATCTCCGAATATATTGGTTCAATCTTCTGCTGACTGAACAGGTTGGACCAAAGAAAGCTCGTGAAATGTGGTTTTTAACAAGGTTCTACACAGCTTCTG</genome_strand>
        <mrna_strand>GGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAAAGGCGTTTTGTAGTGGTGGTGATCAGGCATTGAGAAGTAAGGATGGTTATGCTGATTTTGAAAGTTTTGGTCGCCTTAATGTTTTAGATTTACAG....................................................................................................................................................................GTGCAAATTCGTCGTCTACCAAAACCAGTAATTGCAATG........................................................................................................GTTGCAGGTTACGCTGTTGGTGGAGGACACATTTTACATATGGTTTGCGATCTAACGATTGCAGCAGACAATGCTATATTTGGTCAGACTGGCCCAAAG.....................................................................................................................................................................................................................................................................................................................GTAGGAAGTTTCGATGCTGGTTATGGAAGTTCAATTATGTCCCGTCTG...................................................................................................................................................................................GTTGGACCAAAGAAAGCTCGTGAAATGTGGTTTTTAACAAGGTTCTACACAGCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688861" ref_strand="+" ref_description="SGN-E688861 [t3_tus_55_B21]">
      <seq>caccaaattactctctttgaaaaataacaacattttttccaattaccaagaatgatagaggaggatcttaacactatgaggagaagagtggcatcagttgccaatcatttattgcccatccctttagctcaaaatgttttttcttccattggcttttccaattgtagctcttcttctatgaatgataattaccataaaattcatggtgaagtcccaaatcatgaacctgtttggagacttattccttctgatgatgaatctggcaaggacttcactgatatcatatatgagaaagctgttggtgaacccattgctaagataaccatcaatagaccggatagaagaaatgctttccgacctcacaccatcaaggagcttatccgcgcatttaatgatgccagggatgatggttcagtgggagtcatcatcctcacagggaagggtacaaaggcgttttgtagtggtggtgatcaggcattgagaagtaaggatggttatgctgattttgaaagttttggtcgccttaatgttttagattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93311" stop="90952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93011" g_stop="92694" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92693" i_stop="91895" i_length="799">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91894" g_stop="91772" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="441" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91771" i_stop="91351" i_length="421">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91350" g_stop="91252" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="540" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E688861" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93011" e_stop="92694"/>
          <exon e_start="91894" e_stop="91772"/>
          <exon e_start="91350" e_stop="91252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAATTACTCTCTTTGAAAAATAACAACATTTTTTCAAATTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAGGTTTTCTTCTTACAATTCTTTACCCTCTTATGTGGAATTCTTCAAAAAAAATTCCAACTTAGTAGTACCTCTGTTCTAATTCATGTGCTTCATTGTTCCAATTTTTGTGGCCTTGTTTGAATTTGAAGAGACTTTGAGAAAGGAAGAAAGACTTTTGGAAACTTGTTGACTTAACACTTCATAATAATTGAGTGGCTATTTAAGTTTCTCATTAGTGGTAAAAGAGGAAGTTTAAGCTAAATTGTTTTTAAATTTAGAAAGTTGTCATTCTTTTTTGAACAAACTAAAACGTAAATGTTGTTGGAACAAAGGGAGTATTACTTTTAGATGCCTGGCCGTTACTCAAAGCTTGAGTTTAGTCTAGTGAAAAAACCATGTCTTGAGCTCCATGGAGTTTATGTGATGAATCACAATTTGCCTATAACAAAGACTTCAAGGATGAATGTTTGCATTTATAACATGATAATGGATAACAAATTGCTAAATGGTAGATGATACTGTATTTCTCTGCTATATGTAAAGCATATTGCATTAGATCGATGACCCTTTAAAAAAAATTCCAATGACTTGCAATGCCAGTGACTGTAGAAGGAAAAATCAAATATGATTAAAGCACACGCGTTTCTCAATGATTATCAGCAACCTTAGGTTCTTGCTTAGCAGCTACTAGTAACACGGTTTGAAGCTTCTTTCTTGCTGTTAGTACTTACAGGTGACCTGAATTAATAATGTCAGGAACTCAGAAGCTGGAAATCTGGAGCTTTAGTTTTAAGTCATATTGTTTTCTTTCCTCTTGCAGATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGGAAGGTAAGTTCCCAACAGAAATATCAGATCATGTACAAAGTAGAGAAGTTATGGAATTCAATGTAGGTGTTGTGAACATTAGGCCATGTTATAAGTTTCTCTTACTAGCAAATATTCACTTAAAGCACCATGTCTTAATACTTGATGAAGGAATTGAATGACTGAATTTTAATGCACGCCTTTCCTTTTGTACTAACACCGAACCAGCTTGTTATTGAGCTCGTATTGGTCCTGTTCCATTGAAGAGTATCTCTAAGAAAAATGAGATGTCGTAGGAGTATAAATGTAGTTGGAATTTGTTGTAGATTAGAACTGAGCTCTTGTGGAGATGGTTTCTAGATATCTTTGTATAGTGAGTTAACTTCAGTAGATTGTATCATTTGGCTGTATTGCATGCATTGTTCTCAAGTATGACTTGATGCAGGGTACAAAGGCGTTTTGTAGTGGTGGTGATCAGGCATTGAGAAGTAAGGATGGTTATGCTGATTTTGAAAGTTTTGGTCGCCTTAATGTTTTAGATTTA</genome_strand>
        <mrna_strand>CACCAAATTACTCTCTTTGAAAAATAACAACATTTTTTCCAATTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCCAATCATTTATTGCCCATCCCTTTAGCTCAAAATGTTTTTTCTTCCATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAAAGGCGTTTTGTAGTGGTGGTGATCAGGCATTGAGAAGTAAGGATGGTTATGCTGATTTTGAAAGTTTTGGTCGCCTTAATGTTTTAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551472" ref_strand="+" ref_description="SGN-E551472 [TUS-55-B21]">
      <seq>cacaaaattactctctttgaaaaataacaacattttttccaattaccaagaatgatagaggaggatcttaacactatgaggagaagagtggcatcagttgcaaatcatttattgcccatccctttagctcaaaatgttttttcttcaattggcttttccaattgtagctcttcttctatgaatgataattaccataaaattcatggtgaagtcccaaatcatgaacctgtttggagacttattccttctgatgatgaatctggcaaggacttcactgatatcatatatgagaaagctgttggtgaacccattgctaagataaccatcaatagaccggatagaagaaatgctttccgacctcacaccatcaaggagcttatccgcgcatttaatgatgccagggatgatggttcagtgggagtcatcatcctcacagggaagggtacaaaggcgttttgtagtggtggtgatcaggcattgagaagtaaggatggttatgctgattttgaaagttttggtcgccttaatgttttagattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93311" stop="90952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93011" g_stop="92694" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92693" i_stop="91895" i_length="799">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91894" g_stop="91772" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="441" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91771" i_stop="91351" i_length="421">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91350" g_stop="91252" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="540" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E551472" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93011" e_stop="92694"/>
          <exon e_start="91894" e_stop="91772"/>
          <exon e_start="91350" e_stop="91252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAATTACTCTCTTTGAAAAATAACAACATTTTTTCAAATTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAGGTTTTCTTCTTACAATTCTTTACCCTCTTATGTGGAATTCTTCAAAAAAAATTCCAACTTAGTAGTACCTCTGTTCTAATTCATGTGCTTCATTGTTCCAATTTTTGTGGCCTTGTTTGAATTTGAAGAGACTTTGAGAAAGGAAGAAAGACTTTTGGAAACTTGTTGACTTAACACTTCATAATAATTGAGTGGCTATTTAAGTTTCTCATTAGTGGTAAAAGAGGAAGTTTAAGCTAAATTGTTTTTAAATTTAGAAAGTTGTCATTCTTTTTTGAACAAACTAAAACGTAAATGTTGTTGGAACAAAGGGAGTATTACTTTTAGATGCCTGGCCGTTACTCAAAGCTTGAGTTTAGTCTAGTGAAAAAACCATGTCTTGAGCTCCATGGAGTTTATGTGATGAATCACAATTTGCCTATAACAAAGACTTCAAGGATGAATGTTTGCATTTATAACATGATAATGGATAACAAATTGCTAAATGGTAGATGATACTGTATTTCTCTGCTATATGTAAAGCATATTGCATTAGATCGATGACCCTTTAAAAAAAATTCCAATGACTTGCAATGCCAGTGACTGTAGAAGGAAAAATCAAATATGATTAAAGCACACGCGTTTCTCAATGATTATCAGCAACCTTAGGTTCTTGCTTAGCAGCTACTAGTAACACGGTTTGAAGCTTCTTTCTTGCTGTTAGTACTTACAGGTGACCTGAATTAATAATGTCAGGAACTCAGAAGCTGGAAATCTGGAGCTTTAGTTTTAAGTCATATTGTTTTCTTTCCTCTTGCAGATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGGAAGGTAAGTTCCCAACAGAAATATCAGATCATGTACAAAGTAGAGAAGTTATGGAATTCAATGTAGGTGTTGTGAACATTAGGCCATGTTATAAGTTTCTCTTACTAGCAAATATTCACTTAAAGCACCATGTCTTAATACTTGATGAAGGAATTGAATGACTGAATTTTAATGCACGCCTTTCCTTTTGTACTAACACCGAACCAGCTTGTTATTGAGCTCGTATTGGTCCTGTTCCATTGAAGAGTATCTCTAAGAAAAATGAGATGTCGTAGGAGTATAAATGTAGTTGGAATTTGTTGTAGATTAGAACTGAGCTCTTGTGGAGATGGTTTCTAGATATCTTTGTATAGTGAGTTAACTTCAGTAGATTGTATCATTTGGCTGTATTGCATGCATTGTTCTCAAGTATGACTTGATGCAGGGTACAAAGGCGTTTTGTAGTGGTGGTGATCAGGCATTGAGAAGTAAGGATGGTTATGCTGATTTTGAAAGTTTTGGTCGCCTTAATGTTTTAGATTTA</genome_strand>
        <mrna_strand>CACAAAATTACTCTCTTTGAAAAATAACAACATTTTTTCCAATTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCCATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAAAGGCGTTTTGTAGTGGTGGTGATCAGGCATTGAGAAGTAAGGATGGTTATGCTGATTTTGAAAGTTTTGGTCGCCTTAATGTTTTAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260154" ref_strand="+" ref_description="SGN-E260154 [cLEG-52-K16]">
      <seq>acaaaattactctctttgaaaaataacaacattttttcaaattaccaagaatgatagaggaggatcttaacactatgaggagaagagtggcatcagttgcaaatcatttattgccaatccctttagctcaaaatgttttttcttcaattggcttttccaattgtagctcttcttctatgaatgataattaccataaaattcatggtgaagtcccaaatcatgaacctgtttggagacttattccttctgatgatgaatctggcaaggacttcactgatatcatatatgagaaagctgttggtgaacccattgctaagataaccatcaatagaccggatagaagaaatgctttccgacctcacaccatcaaggagcttatccgcgcatttaatgatgccagggatgatggttcagtgggagtcatcatcctcacagggaagggtacaaaggcgttttgtagtggtggtgatccggcattgagaaataaagatgggtatgctgattttgaaagttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93310" stop="90974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93010" g_stop="92694" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92693" i_stop="91895" i_length="799">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91894" g_stop="91772" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="440" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91771" i_stop="91351" i_length="421">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91350" g_stop="91274" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="517" r_length="77" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E260154" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93010" e_stop="92694"/>
          <exon e_start="91894" e_stop="91772"/>
          <exon e_start="91350" e_stop="91274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATTACTCTCTTTGAAAAATAACAACATTTTTTCAAATTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAGGTTTTCTTCTTACAATTCTTTACCCTCTTATGTGGAATTCTTCAAAAAAAATTCCAACTTAGTAGTACCTCTGTTCTAATTCATGTGCTTCATTGTTCCAATTTTTGTGGCCTTGTTTGAATTTGAAGAGACTTTGAGAAAGGAAGAAAGACTTTTGGAAACTTGTTGACTTAACACTTCATAATAATTGAGTGGCTATTTAAGTTTCTCATTAGTGGTAAAAGAGGAAGTTTAAGCTAAATTGTTTTTAAATTTAGAAAGTTGTCATTCTTTTTTGAACAAACTAAAACGTAAATGTTGTTGGAACAAAGGGAGTATTACTTTTAGATGCCTGGCCGTTACTCAAAGCTTGAGTTTAGTCTAGTGAAAAAACCATGTCTTGAGCTCCATGGAGTTTATGTGATGAATCACAATTTGCCTATAACAAAGACTTCAAGGATGAATGTTTGCATTTATAACATGATAATGGATAACAAATTGCTAAATGGTAGATGATACTGTATTTCTCTGCTATATGTAAAGCATATTGCATTAGATCGATGACCCTTTAAAAAAAATTCCAATGACTTGCAATGCCAGTGACTGTAGAAGGAAAAATCAAATATGATTAAAGCACACGCGTTTCTCAATGATTATCAGCAACCTTAGGTTCTTGCTTAGCAGCTACTAGTAACACGGTTTGAAGCTTCTTTCTTGCTGTTAGTACTTACAGGTGACCTGAATTAATAATGTCAGGAACTCAGAAGCTGGAAATCTGGAGCTTTAGTTTTAAGTCATATTGTTTTCTTTCCTCTTGCAGATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGGAAGGTAAGTTCCCAACAGAAATATCAGATCATGTACAAAGTAGAGAAGTTATGGAATTCAATGTAGGTGTTGTGAACATTAGGCCATGTTATAAGTTTCTCTTACTAGCAAATATTCACTTAAAGCACCATGTCTTAATACTTGATGAAGGAATTGAATGACTGAATTTTAATGCACGCCTTTCCTTTTGTACTAACACCGAACCAGCTTGTTATTGAGCTCGTATTGGTCCTGTTCCATTGAAGAGTATCTCTAAGAAAAATGAGATGTCGTAGGAGTATAAATGTAGTTGGAATTTGTTGTAGATTAGAACTGAGCTCTTGTGGAGATGGTTTCTAGATATCTTTGTATAGTGAGTTAACTTCAGTAGATTGTATCATTTGGCTGTATTGCATGCATTGTTCTCAAGTATGACTTGATGCAGGGTACAAAGGCGTTTTGTAGTGGTGGTGATCAGGCATTGAGAAGTAAGGATGGTTATGCTGATTTTGAAAGTTTTGG</genome_strand>
        <mrna_strand>ACAAAATTACTCTCTTTGAAAAATAACAACATTTTTTCAAATTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAAAGGCGTTTTGTAGTGGTGGTGATCCGGCATTGAGAAATAAAGATGGGTATGCTGATTTTGAAAGTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478112" ref_strand="+" ref_description="SGN-E478112 [cSTD-3-O1]">
      <seq>taacaacattttttcattaattaccaagaatgtcagagaaggacctcaacactatgaggaggagagtggcatcagttgctaatcatttattgccaattcctttagctcaaaatgttgtttcttcaattgggtcttccaattgtagctcctcttctatgaatgataattaccataaaattcatggtgaagtcccaaatcatgaacctgtttggagacttattccttctgatgatgaatctggcaaagagtttactgatattatttatgagaaagctgttggtgaacccattgctaagataaccatcaatagaccggatagaagaaatgctttccgacctcacaccatcaaggagcttattcgcgcatttaatgatgcccgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93271" stop="91508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92987" g_stop="92694" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92693" i_stop="91895" i_length="799">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91894" g_stop="91808" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="383" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E478112" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92987" e_stop="92694"/>
          <exon e_start="91894" e_stop="91808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAACATTTTTTCA--AATTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAGGTTTTCTTCTTACAATTCTTTACCCTCTTATGTGGAATTCTTCAAAAAAAATTCCAACTTAGTAGTACCTCTGTTCTAATTCATGTGCTTCATTGTTCCAATTTTTGTGGCCTTGTTTGAATTTGAAGAGACTTTGAGAAAGGAAGAAAGACTTTTGGAAACTTGTTGACTTAACACTTCATAATAATTGAGTGGCTATTTAAGTTTCTCATTAGTGGTAAAAGAGGAAGTTTAAGCTAAATTGTTTTTAAATTTAGAAAGTTGTCATTCTTTTTTGAACAAACTAAAACGTAAATGTTGTTGGAACAAAGGGAGTATTACTTTTAGATGCCTGGCCGTTACTCAAAGCTTGAGTTTAGTCTAGTGAAAAAACCATGTCTTGAGCTCCATGGAGTTTATGTGATGAATCACAATTTGCCTATAACAAAGACTTCAAGGATGAATGTTTGCATTTATAACATGATAATGGATAACAAATTGCTAAATGGTAGATGATACTGTATTTCTCTGCTATATGTAAAGCATATTGCATTAGATCGATGACCCTTTAAAAAAAATTCCAATGACTTGCAATGCCAGTGACTGTAGAAGGAAAAATCAAATATGATTAAAGCACACGCGTTTCTCAATGATTATCAGCAACCTTAGGTTCTTGCTTAGCAGCTACTAGTAACACGGTTTGAAGCTTCTTTCTTGCTGTTAGTACTTACAGGTGACCTGAATTAATAATGTCAGGAACTCAGAAGCTGGAAATCTGGAGCTTTAGTTTTAAGTCATATTGTTTTCTTTCCTCTTGCAGATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGAT</genome_strand>
        <mrna_strand>TAACAACATTTTTTCATTAATTACCAAGAATGTCAGAGAAGGACCTCAACACTATGAGGAGGAGAGTGGCATCAGTTGCTAATCATTTATTGCCAATTCCTTTAGCTCAAAATGTTGTTTCTTCAATTGGGTCTTCCAATTGTAGCTCCTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAAGAGTTTACTGATATTATTTATGAGAAAGCTGTTGGTGAACCCATTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATTCGCGCATTTAATGATGCCCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476004" ref_strand="+" ref_description="SGN-E476004 [cSTB-43-C9]">
      <seq>taaatacacataggatttctagcatctttttagctccctaaaattccaatgccaaaacccaataatatagcatctatcttatccatcttatcccaataaaatcaaaaacacacacatcaaaatatcatatattattgtcactccataacacaatacaaaattactcacttcgaaaaataacaacattttttcattaattaccaagaatgtcagagaaggacctcaacactatgaggaggagagtggcatcagttgctaatcatttattgccaattcctttagctcaaaatgttgtttcttcaattgggtcttccaattgtagctcctcttctatgaatgataattaccataaaattcatggtgaagtcccaaatcatgaacctgtttggagacttattccttctgatgatgaatctggcaaagagtttactgatattatttatgagaaagctgttggtgaacccattgctaagataaccatcaatagaccggatagaagaaatgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93464" stop="91559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93164" g_stop="92694" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92693" i_stop="91895" i_length="799">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91894" g_stop="91859" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="509" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-E476004" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93164" e_stop="92694"/>
          <exon e_start="91894" e_stop="91859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATACACATATGATTTCTAGCATCTTTTTGGCTCCAT-AAGTCCCAATGTCAAAACCTCATAATATGGCATCCATCTTATCTCATCTTATCCAAATAA-ATCAAAAACACACACATCAAGATATCACATATTATTGTCACTCCATAACACAAACACAAAATTACTCTCTTTGAAAAATAACAACATTTTTTCA--AATTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAGGTTTTCTTCTTACAATTCTTTACCCTCTTATGTGGAATTCTTCAAAAAAAATTCCAACTTAGTAGTACCTCTGTTCTAATTCATGTGCTTCATTGTTCCAATTTTTGTGGCCTTGTTTGAATTTGAAGAGACTTTGAGAAAGGAAGAAAGACTTTTGGAAACTTGTTGACTTAACACTTCATAATAATTGAGTGGCTATTTAAGTTTCTCATTAGTGGTAAAAGAGGAAGTTTAAGCTAAATTGTTTTTAAATTTAGAAAGTTGTCATTCTTTTTTGAACAAACTAAAACGTAAATGTTGTTGGAACAAAGGGAGTATTACTTTTAGATGCCTGGCCGTTACTCAAAGCTTGAGTTTAGTCTAGTGAAAAAACCATGTCTTGAGCTCCATGGAGTTTATGTGATGAATCACAATTTGCCTATAACAAAGACTTCAAGGATGAATGTTTGCATTTATAACATGATAATGGATAACAAATTGCTAAATGGTAGATGATACTGTATTTCTCTGCTATATGTAAAGCATATTGCATTAGATCGATGACCCTTTAAAAAAAATTCCAATGACTTGCAATGCCAGTGACTGTAGAAGGAAAAATCAAATATGATTAAAGCACACGCGTTTCTCAATGATTATCAGCAACCTTAGGTTCTTGCTTAGCAGCTACTAGTAACACGGTTTGAAGCTTCTTTCTTGCTGTTAGTACTTACAGGTGACCTGAATTAATAATGTCAGGAACTCAGAAGCTGGAAATCTGGAGCTTTAGTTTTAAGTCATATTGTTTTCTTTCCTCTTGCAGATAACCATCAATAGACCGGATAGAAGAAATGCTTTC</genome_strand>
        <mrna_strand>TAAATACACATAGGATTTCTAGCATCTTTTTAGCTCCCTAAAATTCCAATGCCAAAACCCAATAATATAGCATCTATCTTATC-CATCTTATCCCAATAAAATCAAAAACACACACATCAAAATATCATATATTATTGTCACTCCATAACAC-AATACAAAATTACTCACTTCGAAAAATAACAACATTTTTTCATTAATTACCAAGAATGTCAGAGAAGGACCTCAACACTATGAGGAGGAGAGTGGCATCAGTTGCTAATCATTTATTGCCAATTCCTTTAGCTCAAAATGTTGTTTCTTCAATTGGGTCTTCCAATTGTAGCTCCTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAAGAGTTTACTGATATTATTTATGAGAAAGCTGTTGGTGAACCCATTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCATCAATAGACCGGATAGAAGAAATGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>176</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="150" PGL_stop="957"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="150" e_stop="957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="150" e_stop="957" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150" stop="957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGCGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCGTTCATCTATCTGGTGCTTTATGTAGACGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAGGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTGCCAATATCCACCTCACTGCCATGTTCGCTCCACAGTCAGAAGAACAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGTTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGATACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  R  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  R  M  I  R  S  S  I  W  C  F  M  *  T  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  G  V  Y  L  V  L  S  L  R  *  R  I  W  E  L  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  L  L  I  P  P  V  L  P  I  S  T  S  L  P  C  S  L  H  S  Q  K  N  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  D  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  G  *  F  V  H  L  S  G  A  L  C  R  R  Y  A  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  C  S  E  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  Y  P  Q  C  C  Q  Y  P  P  H  C  H  V  R  S  T  V  R  R  T  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  I  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  A  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  R  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  Q  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  V  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="152" stop="955"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMAKLGYTRSSYDCCVYYNRLKDDSFIYLVLYVDDMLIAAKKKYDIQKLRGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEQKEYMSRVPYASAVGSLMYVMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6907" PGL_stop="7600"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6907" e_stop="7600"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6907" e_stop="7600" e_length="694"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6907" stop="7600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAGTCGAACTACTGAACTCAATCACTTGTTATTTACTCTACAATTTTCTATCAAGGCTCGTCCTACGTCCTACCTACCCTAACATAATCGTCACGACCCAAAATTATCAAGAAAATGGATCAATTGCAACCACAACAACCAGTTCAAGTTTATCCTAACAATCCAAACAATTTCCCTAACCAACCAAACAATATGCCAATGACTCAATCCTCTTCTTCTCATAACTCATCCAATGGTTCATTTGTGAGTGTTTTTGTTGTCCTAGCTATTGTTTTTGTCATATCTGTTATTGCTTGTGTTGTGGGACGTTTATGTAGCAAGAAAAGCAATGGAGCTAATAAGGTGAAGAAAAGTAGTCATGGTCAACCACAAAAACAAAAAGAGGGAAAACATAATAATAATAATAAGCACAATGAGTTTCACAATAAAAGAGGAGGAGGGGATATAGAATTTGGATTTGATAAGAAAATTGCAAGTTCTAAAGTGGCTGCAGCACATGGAGATAATCATTATAAGGGGTCTAAGCCTCATAAGAATACTAATGGAGGAGTTAGATTTTCTGATAATCATATTGATTTCAAGCTTGGTCCATGAAAACTAGTTGTGTTCATAGAGGAACTCTCTCTATGTACTAATTACTTTGGTAGTAGTTTTAATTTTATTTTGTTAAATTTTTAAGTTTTTATTAACAT</gDNA_template>
            <first_frame> F  S  R  T  T  E  L  N  H  L  L  F  T  L  Q  F  S  I  K  A  R  P  T  S  Y  L  P  *  H  N  R  H  D  P  K  L  S  R  K  W  I  N  C  N  H  N  N  Q  F  K  F  I  L  T  I  Q  T  I  S  L  T  N  Q  T  I  C  Q  *  L  N  P  L  L  L  I  T  H  P  M  V  H  L  *  V  F  L  L  S  *  L  L  F  L  S  Y  L  L  L  L  V  L  W  D  V  Y  V  A  R  K  A  M  E  L  I  R  *  R  K  V  V  M  V  N  H  K  N  K  K  R  E  N  I  I  I  I  I  S  T  M  S  F  T  I  K  E  E  E  G  I  *  N  L  D  L  I  R  K  L  Q  V  L  K  W  L  Q  H  M  E  I  I  I  I  R  G  L  S  L  I  R  I  L  M  E  E  L  D  F  L  I  I  I  L  I  S  S  L  V  H  E  N  *  L  C  S  *  R  N  S  L  Y  V  L  I  T  L  V  V  V  L  I  L  F  C  *  I  F  K  F  L  L  T  </first_frame>
            <second_frame>  L  V  E  L  L  N  S  I  T  C  Y  L  L  Y  N  F  L  S  R  L  V  L  R  P  T  Y  P  N  I  I  V  T  T  Q  N  Y  Q  E  N  G  S  I  A  T  T  T  T  S  S  S  L  S  *  Q  S  K  Q  F  P  *  P  T  K  Q  Y  A  N  D  S  I  L  F  F  S  *  L  I  Q  W  F  I  C  E  C  F  C  C  P  S  Y  C  F  C  H  I  C  Y  C  L  C  C  G  T  F  M  *  Q  E  K  Q  W  S  *  *  G  E  E  K  *  S  W  S  T  T  K  T  K  R  G  K  T  *  *  *  *  *  A  Q  *  V  S  Q  *  K  R  R  R  G  Y  R  I  W  I  *  *  E  N  C  K  F  *  S  G  C  S  T  W  R  *  S  L  *  G  V  *  A  S  *  E  Y  *  W  R  S  *  I  F  *  *  S  Y  *  F  Q  A  W  S  M  K  T  S  C  V  H  R  G  T  L  S  M  Y  *  L  L  W  *  *  F  *  F  Y  F  V  K  F  L  S  F  Y  *  H </second_frame>
            <third_frame>   *  S  N  Y  *  T  Q  S  L  V  I  Y  S  T  I  F  Y  Q  G  S  S  Y  V  L  P  T  L  T  *  S  S  R  P  K  I  I  K  K  M  D  Q  L  Q  P  Q  Q  P  V  Q  V  Y  P  N  N  P  N  N  F  P  N  Q  P  N  N  M  P  M  T  Q  S  S  S  S  H  N  S  S  N  G  S  F  V  S  V  F  V  V  L  A  I  V  F  V  I  S  V  I  A  C  V  V  G  R  L  C  S  K  K  S  N  G  A  N  K  V  K  K  S  S  H  G  Q  P  Q  K  Q  K  E  G  K  H  N  N  N  N  K  H  N  E  F  H  N  K  R  G  G  G  D  I  E  F  G  F  D  K  K  I  A  S  S  K  V  A  A  A  H  G  D  N  H  Y  K  G  S  K  P  H  K  N  T  N  G  G  V  R  F  S  D  N  H  I  D  F  K  L  G  P  *  K  L  V  V  F  I  E  E  L  S  L  C  T  N  Y  F  G  S  S  F  N  F  I  L  L  N  F  *  V  F  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6996" stop="7502"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRPKIIKKMDQLQPQQPVQVYPNNPNNFPNQPNNMPMTQSSSSHNSSNGSFVSVFVVLAIVFVISVIACVVGRLCSKKSNGANKVKKSSHGQPQKQKEGKHNNNNKHNEFHNKRGGGDIEFGFDKKIASSKVAAAHGDNHYKGSKPHKNTNGGVRFSDNHIDFKLGP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="9220" PGL_stop="12132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9220" e_stop="9349"/>
            <exon e_start="11528" e_stop="12132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.498" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9220" e_stop="9349" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.498" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9350" i_stop="11527" i_length="2178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11528" e_stop="12132" e_length="605"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9220" stop="9349"/>
              <exon start="11528" stop="12132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9223" stop="9349"/>
              <exon start="11528" stop="11781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9247" stop="9349"/>
              <exon start="11528" stop="11855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9248" stop="9349"/>
              <exon start="11528" stop="12080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11587" stop="11792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGAAAAATTGAAAGCGCCTGAAATCGGAGTGCCACCGGGAATCATAACAACGTTTCCGGTTCAAGCAGTTTGAGAAATCAGTTGCCGGAGAACGAACGGAGAGATTCATCGGAACCCTATACCGAAACA : ATTTGCAGTGGCACCATGGCTAAATCCGGAGCAGATGAGAAGATTCTCAGCTACAACGATGTCGTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACTTCATCTTTCTCGAAGGAAGTTGATTCTCTTACCTATAAACGATAATTCTGACGTGTGCATGGCTGAAGGTGGGAGTCATTGGAGCTTACTGGTTTTTGATAGAAACTCCAATGTATTTGTACATCATGACAGCAGTTCCGGGTGCATGAATGAGTATCATGCCAAACAAGTATACAAGGCTACTCTTCCCTATACATCATCCAATGCCACTTATAAAGAGTGTCCAAACATGCCAAAGCAAGTTAATGGTTATGATTGTGGCGTGTATGTCTTAGCTATTGCAAGAGTCATCTGTCAGTGGTATGCAAGCAGTGGAACTCAAGATGCAGATACTCTGTGGTTCTCCCATTT</gDNA_template>
            <first_frame> G  K  N  *  K  R  L  K  S  E  C  H  R  E  S  *  Q  R  F  R  F  K  Q  F  E  K  S  V  A  G  E  R  T  E  R  F  I  G  T  L  Y  R  N   : N  L  Q  W  H  H  G  *  I  R  S  R  *  E  D  S  Q  L  Q  R  C  R  S  S  A  I  R  F  G  H  S  Q  W  S  L  L  S  Q  *  P  H  H  *  V  L  F  *  L  S  Q  L  T  L  S  I  *  R  H  I  T  G  T  T  F  Y  C  F  L  D  *  R  V  S  *  S  *  K  P  E  G  F  H  G  T  T  S  S  F  S  K  E  V  D  S  L  T  Y  K  R  *  F  *  R  V  H  G  *  R  W  E  S  L  E  L  T  G  F  *  *  K  L  Q  C  I  C  T  S  *  Q  Q  F  R  V  H  E  *  V  S  C  Q  T  S  I  Q  G  Y  S  S  L  Y  I  I  Q  C  H  L  *  R  V  S  K  H  A  K  A  S  *  W  L  *  L  W  R  V  C  L  S  Y  C  K  S  H  L  S  V  V  C  K  Q  W  N  S  R  C  R  Y  S  V  V  L  P  F </first_frame>
            <second_frame>  G  K  I  E  S  A  *  N  R  S  A  T  G  N  H  N  N  V  S  G  S  S  S  L  R  N  Q  L  P  E  N  E  R  R  D  S  S  E  P  Y  T  E  T  :  I  C  S  G  T  M  A  K  S  G  A  D  E  K  I  L  S  Y  N  D  V  V  L  R  R  S  D  L  D  I  L  N  G  P  Y  Y  L  N  D  R  I  I  E  F  Y  F  S  Y  L  S  S  L  F  P  S  D  D  I  L  L  V  P  P  S  I  A  F  W  I  K  E  C  P  D  P  E  S  L  K  D  F  M  E  P  L  H  L  S  R  R  K  L  I  L  L  P  I  N  D  N  S  D  V  C  M  A  E  G  G  S  H  W  S  L  L  V  F  D  R  N  S  N  V  F  V  H  H  D  S  S  S  G  C  M  N  E  Y  H  A  K  Q  V  Y  K  A  T  L  P  Y  T  S  S  N  A  T  Y  K  E  C  P  N  M  P  K  Q  V  N  G  Y  D  C  G  V  Y  V  L  A  I  A  R  V  I  C  Q  W  Y  A  S  S  G  T  Q  D  A  D  T  L  W  F  S  H   </second_frame>
            <third_frame>   E  K  L  K  A  P  E  I  G  V  P  P  G  I  I  T  T  F  P  V  Q  A  V  *  E  I  S  C  R  R  T  N  G  E  I  H  R  N  P  I  P  K  Q :   F  A  V  A  P  W  L  N  P  E  Q  M  R  R  F  S  A  T  T  M  S  F  F  G  D  Q  I  W  T  F  S  M  V  L  I  I  S  M  T  A  S  L  S  S  I  L  A  I  S  A  H  S  F  H  L  T  T  Y  Y  W  Y  H  L  L  L  L  S  G  L  K  S  V  L  I  L  K  A  *  R  I  S  W  N  H  F  I  F  L  E  G  S  *  F  S  Y  L  *  T  I  I  L  T  C  A  W  L  K  V  G  V  I  G  A  Y  W  F  L  I  E  T  P  M  Y  L  Y  I  M  T  A  V  P  G  A  *  M  S  I  M  P  N  K  Y  T  R  L  L  F  P  I  H  H  P  M  P  L  I  K  S  V  Q  T  C  Q  S  K  L  M  V  M  I  V  A  C  M  S  *  L  L  Q  E  S  S  V  S  G  M  Q  A  V  E  L  K  M  Q  I  L  C  G  S  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9242" stop="9349"/>
                    <exon start="11528" stop="12130"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRSATGNHNNVSGSSSLRNQLPENERRDSSEPYTETICSGTMAKSGADEKILSYNDVVLRRSDLDILNGPYYLNDRIIEFYFSYLSSLFPSDDILLVPPSIAFWIKECPDPESLKDFMEPLHLSRRKLILLPINDNSDVCMAEGGSHWSLLVFDRNSNVFVHHDSSSGCMNEYHAKQVYKATLPYTSSNATYKECPNMPKQVNGYDCGVYVLAIARVICQWYASSGTQDADTLWFSH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="13613" PGL_stop="12729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13613" e_stop="12729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="13613" e_stop="12729" e_length="885"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13613" stop="13052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13461" stop="12729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13461" stop="12731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13460" stop="12961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13438" stop="12837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13421" stop="12771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13274" stop="12801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATTGAGAAATTTCATCTTATCCATCACATTAAAACTAATAATGAACGAGAGAATTTATCTCTTGACCATCCAAAACAATCTCTTTTAGCCCCATCAAAAATCTTTTTTTCTCTTTATCAAATTTAGTTTTCATTTCCATCAACATCAAAAACAAAACTCCCATCCTCCTTGCTTCTTGCCCTCACTCCCTTCCCCCTCCATAAAGAAATTGAAAAAAGAAAACTCACAAGAGGGAAAAGAGGGCATTATATTATCAACCTACAAAAAAAAAAATGGAAAAAATTGGTGATAATATGCAAGTAGAGGAAATGGAAGAAATAAAAGATGTACAAGCAAGAAAAGCCACAATGGTTGGCATAATTGTTGTAGCATGGGCAATTCCTACTTTACATGTCACACATAGGACATGGCATCATTTTTGGTTAGATAGGATAATATTTTTTCTTCCATCTATATTTTTTCAAGTTATACATATCTTGATTACTTGGAAATTTTACAAAGAGATGATGAAACTTATACAACAAGAACAAGAACAGGAACAGGACAGGAAGCAACATAGAGAAATAGATCATAAAAAACCATCGTATACGTTCGTATGCGCGTATTTGTTTTTGATGATAATCATGAGTTGGATGACAGTATCCTAATGAAGATGATCAAGCTTTAGAGTGTGATTTTACAAGTTGTTCAATTCTTGGGAATGATTTGTAGTATTTGCTATTGTTTCCTTTTCTTTTAAGTAGAGTTTTTGATTGAATCAGTTTGTATATGAATTGTTTGAATTCAAGTAGGAATTCTTGATCATCAATCATACAGTATTTTGTCTCTTTATGTATGTAAATGTTTACCTTAAAACTTTTATTTTGAGAGAAACATCATGTG</gDNA_template>
            <first_frame> E  I  E  K  F  H  L  I  H  H  I  K  T  N  N  E  R  E  N  L  S  L  D  H  P  K  Q  S  L  L  A  P  S  K  I  F  F  S  L  Y  Q  I  *  F  S  F  P  S  T  S  K  T  K  L  P  S  S  L  L  L  A  L  T  P  F  P  L  H  K  E  I  E  K  R  K  L  T  R  G  K  R  G  H  Y  I  I  N  L  Q  K  K  K  W  K  K  L  V  I  I  C  K  *  R  K  W  K  K  *  K  M  Y  K  Q  E  K  P  Q  W  L  A  *  L  L  *  H  G  Q  F  L  L  Y  M  S  H  I  G  H  G  I  I  F  G  *  I  G  *  Y  F  F  F  H  L  Y  F  F  K  L  Y  I  S  *  L  L  G  N  F  T  K  R  *  *  N  L  Y  N  K  N  K  N  R  N  R  T  G  S  N  I  E  K  *  I  I  K  N  H  R  I  R  S  Y  A  R  I  C  F  *  *  *  S  *  V  G  *  Q  Y  P  N  E  D  D  Q  A  L  E  C  D  F  T  S  C  S  I  L  G  N  D  L  *  Y  L  L  L  F  P  F  L  L  S  R  V  F  D  *  I  S  L  Y  M  N  C  L  N  S  S  R  N  S  *  S  S  I  I  Q  Y  F  V  S  L  C  M  *  M  F  T  L  K  L  L  F  *  E  K  H  H  V </first_frame>
            <second_frame>  K  L  R  N  F  I  L  S  I  T  L  K  L  I  M  N  E  R  I  Y  L  L  T  I  Q  N  N  L  F  *  P  H  Q  K  S  F  F  L  F  I  K  F  S  F  H  F  H  Q  H  Q  K  Q  N  S  H  P  P  C  F  L  P  S  L  P  S  P  S  I  K  K  L  K  K  E  N  S  Q  E  G  K  E  G  I  I  L  S  T  Y  K  K  K  N  G  K  N  W  *  *  Y  A  S  R  G  N  G  R  N  K  R  C  T  S  K  K  S  H  N  G  W  H  N  C  C  S  M  G  N  S  Y  F  T  C  H  T  *  D  M  A  S  F  L  V  R  *  D  N  I  F  S  S  I  Y  I  F  S  S  Y  T  Y  L  D  Y  L  E  I  L  Q  R  D  D  E  T  Y  T  T  R  T  R  T  G  T  G  Q  E  A  T  *  R  N  R  S  *  K  T  I  V  Y  V  R  M  R  V  F  V  F  D  D  N  H  E  L  D  D  S  I  L  M  K  M  I  K  L  *  S  V  I  L  Q  V  V  Q  F  L  G  M  I  C  S  I  C  Y  C  F  L  F  F  *  V  E  F  L  I  E  S  V  C  I  *  I  V  *  I  Q  V  G  I  L  D  H  Q  S  Y  S  I  L  S  L  Y  V  C  K  C  L  P  *  N  F  Y  F  E  R  N  I  M   </second_frame>
            <third_frame>   N  *  E  I  S  S  Y  P  S  H  *  N  *  *  *  T  R  E  F  I  S  *  P  S  K  T  I  S  F  S  P  I  K  N  L  F  F  S  L  S  N  L  V  F  I  S  I  N  I  K  N  K  T  P  I  L  L  A  S  C  P  H  S  L  P  P  P  *  R  N  *  K  K  K  T  H  K  R  E  K  R  A  L  Y  Y  Q  P  T  K  K  K  M  E  K  I  G  D  N  M  Q  V  E  E  M  E  E  I  K  D  V  Q  A  R  K  A  T  M  V  G  I  I  V  V  A  W  A  I  P  T  L  H  V  T  H  R  T  W  H  H  F  W  L  D  R  I  I  F  F  L  P  S  I  F  F  Q  V  I  H  I  L  I  T  W  K  F  Y  K  E  M  M  K  L  I  Q  Q  E  Q  E  Q  E  Q  D  R  K  Q  H  R  E  I  D  H  K  K  P  S  Y  T  F  V  C  A  Y  L  F  L  M  I  I  M  S  W  M  T  V  S  *  *  R  *  S  S  F  R  V  *  F  Y  K  L  F  N  S  W  E  *  F  V  V  F  A  I  V  S  F  S  F  K  *  S  F  *  L  N  Q  F  V  Y  E  L  F  E  F  K  *  E  F  L  I  I  N  H  T  V  F  C  L  F  M  Y  V  N  V  Y  L  K  T  F  I  L  R  E  T  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13398" stop="12964"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKTHKREKRALYYQPTKKKMEKIGDNMQVEEMEEIKDVQARKATMVGIIVVAWAIPTLHVTHRTWHHFWLDRIIFFLPSIFFQVIHILITWKFYKEMMKLIQQEQEQEQDRKQHREIDHKKPSYTFVCAYLFLMIIMSWMTVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="24328" PGL_stop="26128"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24328" e_stop="24425"/>
            <exon e_start="24524" e_stop="24880"/>
            <exon e_start="24962" e_stop="25536"/>
            <exon e_start="25635" e_stop="25740"/>
            <exon e_start="25897" e_stop="25970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.880" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24328" e_stop="24425" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.880" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24426" i_stop="24523" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24524" e_stop="24880" e_length="357"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24881" i_stop="24961" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24962" e_stop="25536" e_length="575"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.968">
            <gDNA_intron_boundary i_start="25537" i_stop="25634" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25635" e_stop="25740" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.984">
            <gDNA_intron_boundary i_start="25741" i_stop="25896" i_length="156"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25897" e_stop="25970" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24328" stop="24425"/>
              <exon start="24524" stop="24880"/>
              <exon start="24962" stop="25084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24328" stop="24425"/>
              <exon start="24524" stop="24880"/>
              <exon start="24962" stop="25025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24338" stop="24425"/>
              <exon start="24524" stop="24660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24353" stop="24425"/>
              <exon start="24524" stop="24867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25027" stop="25536"/>
              <exon start="25635" stop="25740"/>
              <exon start="25897" stop="25970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25210" stop="25536"/>
              <exon start="25635" stop="25740"/>
              <exon start="25897" stop="25970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25212" stop="25536"/>
              <exon start="25635" stop="25740"/>
              <exon start="25897" stop="25946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGATCAAGTTTCCATGACAATAGATGATGAAAAAATGTTACTCTCTTTCGATTCCCAAGTCGAGTCTCCTAGTTCAACATATCATGATTCCTTGAG : GTCGTTCAAGAAAAATGGGATGATCGAATTAGAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAGGTTAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAGAAATGTGGTGGAAATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTGAACCAAAATCAGGAGAATGTTTTGGTATGGGTGTTCATCTTTATCCTGCAAATATCCATGG : GGTATTATCGGCATTGGAAGATGAGAATGGATTAAGGCATATGTTACTTTGTAGAGTAATATTAGGAAATACAGAAATAATTGAGGCTTCATCCAAACAATTTCAGCCAACTTGTCAAGATTTTGACTCTGGGGTTGACAATTATCTGGCTCCTAAAACATACATTATTTGGCCTTCTTATATGAATTCTCATATTTTACCAAATTTTCTAGTAAGTTTTAGCTGTACTCCAAGTTACTTATTAGGTAAGCAATTCAATATTTATGACTTTGTTTTATATCATGTTAAGTAATTTGGGGCTGATTTGAATATAAATTATGCAGATATCAAATATTGCATAATTCTCTAACTAATCATGTATCAAATGATAGATCCCACATTTAATTAGTATATGAGAATATTCAAGAATGTAATATTATTATTTTGTTTATTTTTTAGGTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTACATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAG : AAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAG : TTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATTAAGTTGCTAGCGATATGATGATGA</gDNA_template>
            <first_frame> N  D  Q  V  S  M  T  I  D  D  E  K  M  L  L  S  F  D  S  Q  V  E  S  P  S  S  T  Y  H  D  S  L  R :   S  F  K  K  N  G  M  I  E  L  E  E  R  N  K  E  H  D  L  I  K  A  G  F  L  S  G  M  G  Q  L  G  K  E  V  E  V  V  A  I  H  K  N  S  C  S  T  I  L  G  Q  A  R  L  E  S  F  R  I  Y  S  E  A  M  R  K  K  C  G  G  N  A  N  I  K  Y  A  W  F  G  S  S  K  D  E  I  C  N  I  I  S  H  G  F  S  T  I  T  E  P  K  S  G  E  C  F  G  M  G  V  H  L  Y  P  A  N  I  H  G :   V  L  S  A  L  E  D  E  N  G  L  R  H  M  L  L  C  R  V  I  L  G  N  T  E  I  I  E  A  S  S  K  Q  F  Q  P  T  C  Q  D  F  D  S  G  V  D  N  Y  L  A  P  K  T  Y  I  I  W  P  S  Y  M  N  S  H  I  L  P  N  F  L  V  S  F  S  C  T  P  S  Y  L  L  G  K  Q  F  N  I  Y  D  F  V  L  Y  H  V  K  *  F  G  A  D  L  N  I  N  Y  A  D  I  K  Y  C  I  I  L  *  L  I  M  Y  Q  M  I  D  P  T  F  N  *  Y  M  R  I  F  K  N  V  I  L  L  F  C  L  F  F  R  C  F  F  E  N  Q  E  G  F  S  K  I  E  F  S  Y  K  V  S  *  F  I  A  C  A  F  Q  I  F  T  S  I  E  N  G  F  D  L  K  I  L  *  R  F  S   : E  K  *  D  H  K  I  S  T  R  S  K  I  E  A  N  S  W  R  Y  I  V  K  S  C  H  E  I  V  S  K  Y  Y  Y  L  S :   C  E  S  E  K  R  A  C  K  F  R  E  N  E  G  D  *  V  A  S  D  M  M  M  </first_frame>
            <second_frame>  M  I  K  F  P  *  Q  *  M  M  K  K  C  Y  S  L  S  I  P  K  S  S  L  L  V  Q  H  I  M  I  P  *   : G  R  S  R  K  M  G  *  S  N  *  R  N  V  T  K  N  M  I  *  S  R  Q  V  F  L  V  E  W  G  N  *  E  R  K  L  K  L  W  L  Y  I  R  I  H  V  Q  L  Y  *  G  K  R  G  *  K  V  F  V  F  I  P  K  Q  C  G  R  N  V  V  E  M  L  I  L  N  M  L  G  L  V  L  P  K  M  K  F  V  T  *  F  H  M  D  F  L  Q  L  L  N  Q  N  Q  E  N  V  L  V  W  V  F  I  F  I  L  Q  I  S  M   : G  Y  Y  R  H  W  K  M  R  M  D  *  G  I  C  Y  F  V  E  *  Y  *  E  I  Q  K  *  L  R  L  H  P  N  N  F  S  Q  L  V  K  I  L  T  L  G  L  T  I  I  W  L  L  K  H  T  L  F  G  L  L  I  *  I  L  I  F  Y  Q  I  F  *  *  V  L  A  V  L  Q  V  T  Y  *  V  S  N  S  I  F  M  T  L  F  Y  I  M  L  S  N  L  G  L  I  *  I  *  I  M  Q  I  S  N  I  A  *  F  S  N  *  S  C  I  K  *  *  I  P  H  L  I  S  I  *  E  Y  S  R  M  *  Y  Y  Y  F  V  Y  F  L  G  A  S  S  K  I  K  K  V  S  P  K  S  N  S  R  I  K  F  H  D  L  L  R  V  L  S  K  Y  L  H  P  S  R  M  V  L  I  S  K  Y  Y  E  D  F  Q  :  K  N  K  I  T  K  L  V  L  V  R  K  L  R  R  I  A  G  D  T  S  L  R  A  V  M  K  L  Y  P  N  T  T  I  *   : V  V  N  Q  R  K  E  L  V  N  S  V  R  T  K  V  I  K  L  L  A  I  *  *  * </second_frame>
            <third_frame>   *  S  S  F  H  D  N  R  *  *  K  N  V  T  L  F  R  F  P  S  R  V  S  *  F  N  I  S  *  F  L  E  :  V  V  Q  E  K  W  D  D  R  I  R  G  T  *  Q  R  T  *  F  N  Q  G  R  F  S  *  W  N  G  A  I  R  K  G  S  *  S  C  G  Y  T  *  E  F  M  F  N  Y  I  R  A  S  E  V  R  K  F  S  Y  L  F  R  S  N  A  E  E  M  W  W  K  C  *  Y  *  I  C  L  V  W  F  F  Q  R  *  N  L  *  H  N  F  T  W  I  F  Y  N  Y  *  T  K  I  R  R  M  F  W  Y  G  C  S  S  L  S  C  K  Y  P  W  :  G  I  I  G  I  G  R  *  E  W  I  K  A  Y  V  T  L  *  S  N  I  R  K  Y  R  N  N  *  G  F  I  Q  T  I  S  A  N  L  S  R  F  *  L  W  G  *  Q  L  S  G  S  *  N  I  H  Y  L  A  F  L  Y  E  F  S  Y  F  T  K  F  S  S  K  F  *  L  Y  S  K  L  L  I  R  *  A  I  Q  Y  L  *  L  C  F  I  S  C  *  V  I  W  G  *  F  E  Y  K  L  C  R  Y  Q  I  L  H  N  S  L  T  N  H  V  S  N  D  R  S  H  I  *  L  V  Y  E  N  I  Q  E  C  N  I  I  I  L  F  I  F  *  V  L  L  R  K  S  R  R  F  L  Q  N  R  I  L  V  *  S  F  M  I  Y  C  V  C  F  P  N  I  Y  I  H  R  E  W  F  *  S  Q  N  T  M  K  I  F  R :   K  I  R  S  Q  N  *  Y  S  F  E  N  *  G  E  *  L  E  I  H  R  *  E  L  S  *  N  C  I  Q  I  L  L  F  K  :  L  *  I  R  E  K  S  L  *  I  P  *  E  R  R  *  L  S  C  *  R  Y  D  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24328" stop="24425"/>
                    <exon start="24524" stop="24880"/>
                    <exon start="24962" stop="25253"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDQVSMTIDDEKMLLSFDSQVESPSSTYHDSLRSFKKNGMIELEERNKEHDLIKAGFLSGMGQLGKEVEVVAIHKNSCSTILGQARLESFRIYSEAMRKKCGGNANIKYAWFGSSKDEICNIISHGFSTITEPKSGECFGMGVHLYPANIHGVLSALEDENGLRHMLLCRVILGNTEIIEASSKQFQPTCQDFDSGVDNYLAPKTYIIWPSYMNSHILPNFLVSFSCTPSYLLGKQFNIYDFVLYHVK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25375" stop="25536"/>
                    <exon start="25635" stop="25739"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYYFVYFLGASSKIKKVSPKSNSRIKFHDLLRVLSKYLHPSRMVLISKYYEDFQKNKITKLVLVRKLRRIAGDTSLRAVMKLYPNTTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24328" e_stop="24425"/>
            <exon e_start="24524" e_stop="24880"/>
            <exon e_start="24962" e_stop="25206"/>
            <exon e_start="25400" e_stop="25536"/>
            <exon e_start="25635" e_stop="25740"/>
            <exon e_start="25897" e_stop="26128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.880" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.795" acc_prob="0.998" e_score="0.994"/>
          <exon-intron don_prob="0.993" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24328" e_stop="24425" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.880" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24426" i_stop="24523" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24524" e_stop="24880" e_length="357"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24881" i_stop="24961" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="24962" e_stop="25206" e_length="245"/>
          </exon>
          <intron i_serial="3" don_prob="0.795" acc_prob="0.998">
            <gDNA_intron_boundary i_start="25207" i_stop="25399" i_length="193"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25400" e_stop="25536" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.968">
            <gDNA_intron_boundary i_start="25537" i_stop="25634" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25635" e_stop="25740" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.984">
            <gDNA_intron_boundary i_start="25741" i_stop="25896" i_length="156"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="25897" e_stop="26128" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24328" stop="24425"/>
              <exon start="24524" stop="24880"/>
              <exon start="24962" stop="25084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24328" stop="24425"/>
              <exon start="24524" stop="24880"/>
              <exon start="24962" stop="25025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24338" stop="24425"/>
              <exon start="24524" stop="24660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24353" stop="24425"/>
              <exon start="24524" stop="24867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25037" stop="25206"/>
              <exon start="25400" stop="25536"/>
              <exon start="25635" stop="25740"/>
              <exon start="25897" stop="26103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25100" stop="25206"/>
              <exon start="25400" stop="25536"/>
              <exon start="25635" stop="25740"/>
              <exon start="25897" stop="26103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25129" stop="25206"/>
              <exon start="25400" stop="25536"/>
              <exon start="25635" stop="25740"/>
              <exon start="25897" stop="26128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGATCAAGTTTCCATGACAATAGATGATGAAAAAATGTTACTCTCTTTCGATTCCCAAGTCGAGTCTCCTAGTTCAACATATCATGATTCCTTGAG : GTCGTTCAAGAAAAATGGGATGATCGAATTAGAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAGGTTAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAGAAATGTGGTGGAAATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTGAACCAAAATCAGGAGAATGTTTTGGTATGGGTGTTCATCTTTATCCTGCAAATATCCATGG : GGTATTATCGGCATTGGAAGATGAGAATGGATTAAGGCATATGTTACTTTGTAGAGTAATATTAGGAAATACAGAAATAATTGAGGCTTCATCCAAACAATTTCAGCCAACTTGTCAAGATTTTGACTCTGGGGTTGACAATTATCTGGCTCCTAAAACATACATTATTTGGCCTTCTTATATGAATTCTCATATTTTACCAAATTTTCTAGTAAGTTTTAGCTGTACTCCAAGTTACTTATTAG : GTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTACATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAG : AAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAG : TTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATTAAGTTGCTAGCGATATGATGATGACGGAGTTTATCAAAGTGTGAAAAGAAAATTTTCCCTTTGTTTTTCGACTACAACAAGTTTTTTATTTATGAAGTTGTATAGTATTTAAGTGATGTACCAATTGTATTAAACGAATAATATTATTTAATATTGAATTGTGATGTGACTTATTTGAGAAC</gDNA_template>
            <first_frame> N  D  Q  V  S  M  T  I  D  D  E  K  M  L  L  S  F  D  S  Q  V  E  S  P  S  S  T  Y  H  D  S  L  R :   S  F  K  K  N  G  M  I  E  L  E  E  R  N  K  E  H  D  L  I  K  A  G  F  L  S  G  M  G  Q  L  G  K  E  V  E  V  V  A  I  H  K  N  S  C  S  T  I  L  G  Q  A  R  L  E  S  F  R  I  Y  S  E  A  M  R  K  K  C  G  G  N  A  N  I  K  Y  A  W  F  G  S  S  K  D  E  I  C  N  I  I  S  H  G  F  S  T  I  T  E  P  K  S  G  E  C  F  G  M  G  V  H  L  Y  P  A  N  I  H  G :   V  L  S  A  L  E  D  E  N  G  L  R  H  M  L  L  C  R  V  I  L  G  N  T  E  I  I  E  A  S  S  K  Q  F  Q  P  T  C  Q  D  F  D  S  G  V  D  N  Y  L  A  P  K  T  Y  I  I  W  P  S  Y  M  N  S  H  I  L  P  N  F  L  V  S  F  S  C  T  P  S  Y  L  L   : G  A  S  S  K  I  K  K  V  S  P  K  S  N  S  R  I  K  F  H  D  L  L  R  V  L  S  K  Y  L  H  P  S  R  M  V  L  I  S  K  Y  Y  E  D  F  Q  :  K  N  K  I  T  K  L  V  L  V  R  K  L  R  R  I  A  G  D  T  S  L  R  A  V  M  K  L  Y  P  N  T  T  I  *   : V  V  N  Q  R  K  E  L  V  N  S  V  R  T  K  V  I  K  L  L  A  I  *  *  *  R  S  L  S  K  C  E  K  K  I  F  P  L  F  F  D  Y  N  K  F  F  I  Y  E  V  V  *  Y  L  S  D  V  P  I  V  L  N  E  *  Y  Y  L  I  L  N  C  D  V  T  Y  L  R   </first_frame>
            <second_frame>  M  I  K  F  P  *  Q  *  M  M  K  K  C  Y  S  L  S  I  P  K  S  S  L  L  V  Q  H  I  M  I  P  *   : G  R  S  R  K  M  G  *  S  N  *  R  N  V  T  K  N  M  I  *  S  R  Q  V  F  L  V  E  W  G  N  *  E  R  K  L  K  L  W  L  Y  I  R  I  H  V  Q  L  Y  *  G  K  R  G  *  K  V  F  V  F  I  P  K  Q  C  G  R  N  V  V  E  M  L  I  L  N  M  L  G  L  V  L  P  K  M  K  F  V  T  *  F  H  M  D  F  L  Q  L  L  N  Q  N  Q  E  N  V  L  V  W  V  F  I  F  I  L  Q  I  S  M   : G  Y  Y  R  H  W  K  M  R  M  D  *  G  I  C  Y  F  V  E  *  Y  *  E  I  Q  K  *  L  R  L  H  P  N  N  F  S  Q  L  V  K  I  L  T  L  G  L  T  I  I  W  L  L  K  H  T  L  F  G  L  L  I  *  I  L  I  F  Y  Q  I  F  *  *  V  L  A  V  L  Q  V  T  Y  *  :  V  L  L  R  K  S  R  R  F  L  Q  N  R  I  L  V  *  S  F  M  I  Y  C  V  C  F  P  N  I  Y  I  H  R  E  W  F  *  S  Q  N  T  M  K  I  F  R :   K  I  R  S  Q  N  *  Y  S  F  E  N  *  G  E  *  L  E  I  H  R  *  E  L  S  *  N  C  I  Q  I  L  L  F  K  :  L  *  I  R  E  K  S  L  *  I  P  *  E  R  R  *  L  S  C  *  R  Y  D  D  D  G  V  Y  Q  S  V  K  R  K  F  S  L  C  F  S  T  T  T  S  F  L  F  M  K  L  Y  S  I  *  V  M  Y  Q  L  Y  *  T  N  N  I  I  *  Y  *  I  V  M  *  L  I  *  E  </second_frame>
            <third_frame>   *  S  S  F  H  D  N  R  *  *  K  N  V  T  L  F  R  F  P  S  R  V  S  *  F  N  I  S  *  F  L  E  :  V  V  Q  E  K  W  D  D  R  I  R  G  T  *  Q  R  T  *  F  N  Q  G  R  F  S  *  W  N  G  A  I  R  K  G  S  *  S  C  G  Y  T  *  E  F  M  F  N  Y  I  R  A  S  E  V  R  K  F  S  Y  L  F  R  S  N  A  E  E  M  W  W  K  C  *  Y  *  I  C  L  V  W  F  F  Q  R  *  N  L  *  H  N  F  T  W  I  F  Y  N  Y  *  T  K  I  R  R  M  F  W  Y  G  C  S  S  L  S  C  K  Y  P  W  :  G  I  I  G  I  G  R  *  E  W  I  K  A  Y  V  T  L  *  S  N  I  R  K  Y  R  N  N  *  G  F  I  Q  T  I  S  A  N  L  S  R  F  *  L  W  G  *  Q  L  S  G  S  *  N  I  H  Y  L  A  F  L  Y  E  F  S  Y  F  T  K  F  S  S  K  F  *  L  Y  S  K  L  L  I  R :   C  F  F  E  N  Q  E  G  F  S  K  I  E  F  S  Y  K  V  S  *  F  I  A  C  A  F  Q  I  F  T  S  I  E  N  G  F  D  L  K  I  L  *  R  F  S   : E  K  *  D  H  K  I  S  T  R  S  K  I  E  A  N  S  W  R  Y  I  V  K  S  C  H  E  I  V  S  K  Y  Y  Y  L  S :   C  E  S  E  K  R  A  C  K  F  R  E  N  E  G  D  *  V  A  S  D  M  M  M  T  E  F  I  K  V  *  K  E  N  F  P  F  V  F  R  L  Q  Q  V  F  Y  L  *  S  C  I  V  F  K  *  C  T  N  C  I  K  R  I  I  L  F  N  I  E  L  *  C  D  L  F  E  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24328" stop="24425"/>
                    <exon start="24524" stop="24880"/>
                    <exon start="24962" stop="25206"/>
                    <exon start="25400" stop="25536"/>
                    <exon start="25635" stop="25739"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDQVSMTIDDEKMLLSFDSQVESPSSTYHDSLRSFKKNGMIELEERNKEHDLIKAGFLSGMGQLGKEVEVVAIHKNSCSTILGQARLESFRIYSEAMRKKCGGNANIKYAWFGSSKDEICNIISHGFSTITEPKSGECFGMGVHLYPANIHGVLSALEDENGLRHMLLCRVILGNTEIIEASSKQFQPTCQDFDSGVDNYLAPKTYIIWPSYMNSHILPNFLVSFSCTPSYLLGASSKIKKVSPKSNSRIKFHDLLRVLSKYLHPSRMVLISKYYEDFQKNKITKLVLVRKLRRIAGDTSLRAVMKLYPNTTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="24338" e_stop="24425"/>
            <exon e_start="24524" e_stop="24682"/>
            <exon e_start="24775" e_stop="24880"/>
            <exon e_start="24962" e_stop="25536"/>
            <exon e_start="25635" e_stop="25740"/>
            <exon e_start="25897" e_stop="25970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.880" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.002" e_score="0.993"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24338" e_stop="24425" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.880" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24426" i_stop="24523" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="24524" e_stop="24682" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.002">
            <gDNA_intron_boundary i_start="24683" i_stop="24774" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24775" e_stop="24880" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24881" i_stop="24961" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24962" e_stop="25536" e_length="575"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.968">
            <gDNA_intron_boundary i_start="25537" i_stop="25634" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25635" e_stop="25740" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.984">
            <gDNA_intron_boundary i_start="25741" i_stop="25896" i_length="156"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25897" e_stop="25970" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24338" stop="24425"/>
              <exon start="24524" stop="24660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24641" stop="24682"/>
              <exon start="24775" stop="24880"/>
              <exon start="24962" stop="25396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25027" stop="25536"/>
              <exon start="25635" stop="25740"/>
              <exon start="25897" stop="25970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25210" stop="25536"/>
              <exon start="25635" stop="25740"/>
              <exon start="25897" stop="25970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25212" stop="25536"/>
              <exon start="25635" stop="25740"/>
              <exon start="25897" stop="25946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCATGACAATAGATGATGAAAAAATGTTACTCTCTTTCGATTCCCAAGTCGAGTCTCCTAGTTCAACATATCATGATTCCTTGAG : GTCGTTCAAGAAAAATGGGATGATCGAATTAGAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAG : ATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTGAACCAAAATCAGGAGAATGTTTTGGTATGGGTGTTCATCTTTATCCTGCAAATATCCATGG : GGTATTATCGGCATTGGAAGATGAGAATGGATTAAGGCATATGTTACTTTGTAGAGTAATATTAGGAAATACAGAAATAATTGAGGCTTCATCCAAACAATTTCAGCCAACTTGTCAAGATTTTGACTCTGGGGTTGACAATTATCTGGCTCCTAAAACATACATTATTTGGCCTTCTTATATGAATTCTCATATTTTACCAAATTTTCTAGTAAGTTTTAGCTGTACTCCAAGTTACTTATTAGGTAAGCAATTCAATATTTATGACTTTGTTTTATATCATGTTAAGTAATTTGGGGCTGATTTGAATATAAATTATGCAGATATCAAATATTGCATAATTCTCTAACTAATCATGTATCAAATGATAGATCCCACATTTAATTAGTATATGAGAATATTCAAGAATGTAATATTATTATTTTGTTTATTTTTTAGGTGCTTCTTCGAAAATCAAGAAGGTTTCTCCAAAATCGAATTCTCGTATAAAGTTTCATGATTTATTGCGTGTGCTTTCCAAATATTTACATCCATCGAGAATGGTTTTGATCTCAAAATACTATGAAGATTTTCAG : AAAAATAAGATCACAAAATTAGTACTCGTTCGAAAATTGAGGCGAATAGCTGGAGATACATCGTTAAGAGCTGTCATGAAATTGTATCCAAATACTACTATTTAAG : TTGTGAATCAGAGAAAAGAGCTTGTAAATTCCGTGAGAACGAAGGTGATTAAGTTGCTAGCGATATGATGATGA</gDNA_template>
            <first_frame> F  P  *  Q  *  M  M  K  K  C  Y  S  L  S  I  P  K  S  S  L  L  V  Q  H  I  M  I  P  *   : G  R  S  R  K  M  G  *  S  N  *  R  N  V  T  K  N  M  I  *  S  R  Q  V  F  L  V  E  W  G  N  *  E  R  K  L  K  L  W  L  Y  I  R  I  H  V  Q  L  Y  *  G  K  R   : D  E  I  C  N  I  I  S  H  G  F  S  T  I  T  E  P  K  S  G  E  C  F  G  M  G  V  H  L  Y  P  A  N  I  H  G :   V  L  S  A  L  E  D  E  N  G  L  R  H  M  L  L  C  R  V  I  L  G  N  T  E  I  I  E  A  S  S  K  Q  F  Q  P  T  C  Q  D  F  D  S  G  V  D  N  Y  L  A  P  K  T  Y  I  I  W  P  S  Y  M  N  S  H  I  L  P  N  F  L  V  S  F  S  C  T  P  S  Y  L  L  G  K  Q  F  N  I  Y  D  F  V  L  Y  H  V  K  *  F  G  A  D  L  N  I  N  Y  A  D  I  K  Y  C  I  I  L  *  L  I  M  Y  Q  M  I  D  P  T  F  N  *  Y  M  R  I  F  K  N  V  I  L  L  F  C  L  F  F  R  C  F  F  E  N  Q  E  G  F  S  K  I  E  F  S  Y  K  V  S  *  F  I  A  C  A  F  Q  I  F  T  S  I  E  N  G  F  D  L  K  I  L  *  R  F  S   : E  K  *  D  H  K  I  S  T  R  S  K  I  E  A  N  S  W  R  Y  I  V  K  S  C  H  E  I  V  S  K  Y  Y  Y  L  S :   C  E  S  E  K  R  A  C  K  F  R  E  N  E  G  D  *  V  A  S  D  M  M  M  </first_frame>
            <second_frame>  F  H  D  N  R  *  *  K  N  V  T  L  F  R  F  P  S  R  V  S  *  F  N  I  S  *  F  L  E  :  V  V  Q  E  K  W  D  D  R  I  R  G  T  *  Q  R  T  *  F  N  Q  G  R  F  S  *  W  N  G  A  I  R  K  G  S  *  S  C  G  Y  T  *  E  F  M  F  N  Y  I  R  A  S  E  :  M  K  F  V  T  *  F  H  M  D  F  L  Q  L  L  N  Q  N  Q  E  N  V  L  V  W  V  F  I  F  I  L  Q  I  S  M   : G  Y  Y  R  H  W  K  M  R  M  D  *  G  I  C  Y  F  V  E  *  Y  *  E  I  Q  K  *  L  R  L  H  P  N  N  F  S  Q  L  V  K  I  L  T  L  G  L  T  I  I  W  L  L  K  H  T  L  F  G  L  L  I  *  I  L  I  F  Y  Q  I  F  *  *  V  L  A  V  L  Q  V  T  Y  *  V  S  N  S  I  F  M  T  L  F  Y  I  M  L  S  N  L  G  L  I  *  I  *  I  M  Q  I  S  N  I  A  *  F  S  N  *  S  C  I  K  *  *  I  P  H  L  I  S  I  *  E  Y  S  R  M  *  Y  Y  Y  F  V  Y  F  L  G  A  S  S  K  I  K  K  V  S  P  K  S  N  S  R  I  K  F  H  D  L  L  R  V  L  S  K  Y  L  H  P  S  R  M  V  L  I  S  K  Y  Y  E  D  F  Q  :  K  N  K  I  T  K  L  V  L  V  R  K  L  R  R  I  A  G  D  T  S  L  R  A  V  M  K  L  Y  P  N  T  T  I  *   : V  V  N  Q  R  K  E  L  V  N  S  V  R  T  K  V  I  K  L  L  A  I  *  *  * </second_frame>
            <third_frame>   S  M  T  I  D  D  E  K  M  L  L  S  F  D  S  Q  V  E  S  P  S  S  T  Y  H  D  S  L  R :   S  F  K  K  N  G  M  I  E  L  E  E  R  N  K  E  H  D  L  I  K  A  G  F  L  S  G  M  G  Q  L  G  K  E  V  E  V  V  A  I  H  K  N  S  C  S  T  I  L  G  Q  A  R :   *  N  L  *  H  N  F  T  W  I  F  Y  N  Y  *  T  K  I  R  R  M  F  W  Y  G  C  S  S  L  S  C  K  Y  P  W  :  G  I  I  G  I  G  R  *  E  W  I  K  A  Y  V  T  L  *  S  N  I  R  K  Y  R  N  N  *  G  F  I  Q  T  I  S  A  N  L  S  R  F  *  L  W  G  *  Q  L  S  G  S  *  N  I  H  Y  L  A  F  L  Y  E  F  S  Y  F  T  K  F  S  S  K  F  *  L  Y  S  K  L  L  I  R  *  A  I  Q  Y  L  *  L  C  F  I  S  C  *  V  I  W  G  *  F  E  Y  K  L  C  R  Y  Q  I  L  H  N  S  L  T  N  H  V  S  N  D  R  S  H  I  *  L  V  Y  E  N  I  Q  E  C  N  I  I  I  L  F  I  F  *  V  L  L  R  K  S  R  R  F  L  Q  N  R  I  L  V  *  S  F  M  I  Y  C  V  C  F  P  N  I  Y  I  H  R  E  W  F  *  S  Q  N  T  M  K  I  F  R :   K  I  R  S  Q  N  *  Y  S  F  E  N  *  G  E  *  L  E  I  H  R  *  E  L  S  *  N  C  I  Q  I  L  L  F  K  :  L  *  I  R  E  K  S  L  *  I  P  *  E  R  R  *  L  S  C  *  R  Y  D  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24673" stop="24682"/>
                    <exon start="24775" stop="24880"/>
                    <exon start="24962" stop="25253"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKRDEICNIISHGFSTITEPKSGECFGMGVHLYPANIHGVLSALEDENGLRHMLLCRVILGNTEIIEASSKQFQPTCQDFDSGVDNYLAPKTYIIWPSYMNSHILPNFLVSFSCTPSYLLGKQFNIYDFVLYHVK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25375" stop="25536"/>
                    <exon start="25635" stop="25739"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYYFVYFLGASSKIKKVSPKSNSRIKFHDLLRVLSKYLHPSRMVLISKYYEDFQKNKITKLVLVRKLRRIAGDTSLRAVMKLYPNTTI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24340" stop="24425"/>
                    <exon start="24524" stop="24682"/>
                    <exon start="24775" stop="24778"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMTIDDEKMLLSFDSQVESPSSTYHDSLRSFKKNGMIELEERNKEHDLIKAGFLSGMGQLGKEVEVVAIHKNSCSTILGQAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="24402" e_stop="24819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24402" e_stop="24819" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24402" stop="24819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202675" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAACATATCATGATTCCTTGAGGTCAGAAGCGAATTCAAAATTTCGTTTCGTTAATTTCACTTGTACATTATCATCTGATACTCGATATTATAAATAATATTTTGATTCGATTATATCAGGTCGTTCAAGAAAAATGGGATGATCGAATTAGAGGAACGTAACAAAGAACATGATTTAATCAAGGCAGGTTTTCTTAGTGGAATGGGGCAATTAGGAAAGGAAGTTGAAGTTGTGGCTATACATAAGAATTCATGTTCAACTATATTAGGGCAAGCGAGGTTAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAGAAATGTGGTGGAAATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAACATAATTTCACATGGATTTTCTACAATTACTG</gDNA_template>
            <first_frame> F  N  I  S  *  F  L  E  V  R  S  E  F  K  I  S  F  R  *  F  H  L  Y  I  I  I  *  Y  S  I  L  *  I  I  F  *  F  D  Y  I  R  S  F  K  K  N  G  M  I  E  L  E  E  R  N  K  E  H  D  L  I  K  A  G  F  L  S  G  M  G  Q  L  G  K  E  V  E  V  V  A  I  H  K  N  S  C  S  T  I  L  G  Q  A  R  L  E  S  F  R  I  Y  S  E  A  M  R  K  K  C  G  G  N  A  N  I  K  Y  A  W  F  G  S  S  K  D  E  I  C  N  I  I  S  H  G  F  S  T  I  T  </first_frame>
            <second_frame>  S  T  Y  H  D  S  L  R  S  E  A  N  S  K  F  R  F  V  N  F  T  C  T  L  S  S  D  T  R  Y  Y  K  *  Y  F  D  S  I  I  S  G  R  S  R  K  M  G  *  S  N  *  R  N  V  T  K  N  M  I  *  S  R  Q  V  F  L  V  E  W  G  N  *  E  R  K  L  K  L  W  L  Y  I  R  I  H  V  Q  L  Y  *  G  K  R  G  *  K  V  F  V  F  I  P  K  Q  C  G  R  N  V  V  E  M  L  I  L  N  M  L  G  L  V  L  P  K  M  K  F  V  T  *  F  H  M  D  F  L  Q  L  L </second_frame>
            <third_frame>   Q  H  I  M  I  P  *  G  Q  K  R  I  Q  N  F  V  S  L  I  S  L  V  H  Y  H  L  I  L  D  I  I  N  N  I  L  I  R  L  Y  Q  V  V  Q  E  K  W  D  D  R  I  R  G  T  *  Q  R  T  *  F  N  Q  G  R  F  S  *  W  N  G  A  I  R  K  G  S  *  S  C  G  Y  T  *  E  F  M  F  N  Y  I  R  A  S  E  V  R  K  F  S  Y  L  F  R  S  N  A  E  E  M  W  W  K  C  *  Y  *  I  C  L  V  W  F  F  Q  R  *  N  L  *  H  N  F  T  W  I  F  Y  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24510" stop="24818"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDYIRSFKKNGMIELEERNKEHDLIKAGFLSGMGQLGKEVEVVAIHKNSCSTILGQARLESFRIYSEAMRKKCGGNANIKYAWFGSSKDEICNIISHGFSTIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="28077" PGL_stop="29367"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28077" e_stop="28140"/>
            <exon e_start="28219" e_stop="28575"/>
            <exon e_start="29285" e_stop="29367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28077" e_stop="28140" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28141" i_stop="28218" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28219" e_stop="28575" e_length="357"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="28576" i_stop="29284" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="29285" e_stop="29367" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28077" stop="28140"/>
              <exon start="28219" stop="28575"/>
              <exon start="29285" stop="29367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266042" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGTTGTTCTCTTCTGATTCCGAAGTCGAGTCTCCTAGTCCAAGGACAAATTATCATTTCAG : GTCGTTGAAGAGCAATGAAGTAATGAAACTGGAAGAAGGTGACCAAGATCATGATTTGATTAAGGCAGGTTTTCTTAGTGGAATGGGACAATTGGGAAATGAAATTGAAGTTGTGGCTGTACATAAAAATTCATGTTCCACTATATTAGGGCAAGCGAGGTCAGAAAGTTTTCGTATTTATTCCGAAGCAATGCGGAAAAAATGTAGTGGAGATGCTAATATTAAATATGCTTGGTTTGGTTCTTCCAAAGATGAAATTTGTAATATTATTTCACATGGATTTTCAACAATTATGGAACCTAATTATGGGGATTGTTTTGGCAATGGTGTCCATCTTTATCCTGCAAATATCGATGG : GGTATTTTCGGCAGTGGAAGATGAGAATGGATTAAGACATATGTTACTTTGCAGAGTAATATTAGGAAATACAGAAGTAATTG</gDNA_template>
            <first_frame> K  C  C  S  L  L  I  P  K  S  S  L  L  V  Q  G  Q  I  I  I  S   : G  R  *  R  A  M  K  *  *  N  W  K  K  V  T  K  I  M  I  *  L  R  Q  V  F  L  V  E  W  D  N  W  E  M  K  L  K  L  W  L  Y  I  K  I  H  V  P  L  Y  *  G  K  R  G  Q  K  V  F  V  F  I  P  K  Q  C  G  K  N  V  V  E  M  L  I  L  N  M  L  G  L  V  L  P  K  M  K  F  V  I  L  F  H  M  D  F  Q  Q  L  W  N  L  I  M  G  I  V  L  A  M  V  S  I  F  I  L  Q  I  S  M   : G  Y  F  R  Q  W  K  M  R  M  D  *  D  I  C  Y  F  A  E  *  Y  *  E  I  Q  K  *  L </first_frame>
            <second_frame>  N  V  V  L  F  *  F  R  S  R  V  S  *  S  K  D  K  L  S  F  Q  :  V  V  E  E  Q  *  S  N  E  T  G  R  R  *  P  R  S  *  F  D  *  G  R  F  S  *  W  N  G  T  I  G  K  *  N  *  S  C  G  C  T  *  K  F  M  F  H  Y  I  R  A  S  E  V  R  K  F  S  Y  L  F  R  S  N  A  E  K  M  *  W  R  C  *  Y  *  I  C  L  V  W  F  F  Q  R  *  N  L  *  Y  Y  F  T  W  I  F  N  N  Y  G  T  *  L  W  G  L  F  W  Q  W  C  P  S  L  S  C  K  Y  R  W  :  G  I  F  G  S  G  R  *  E  W  I  K  T  Y  V  T  L  Q  S  N  I  R  K  Y  R  S  N   </second_frame>
            <third_frame>   M  L  F  S  S  D  S  E  V  E  S  P  S  P  R  T  N  Y  H  F  R :   S  L  K  S  N  E  V  M  K  L  E  E  G  D  Q  D  H  D  L  I  K  A  G  F  L  S  G  M  G  Q  L  G  N  E  I  E  V  V  A  V  H  K  N  S  C  S  T  I  L  G  Q  A  R  S  E  S  F  R  I  Y  S  E  A  M  R  K  K  C  S  G  D  A  N  I  K  Y  A  W  F  G  S  S  K  D  E  I  C  N  I  I  S  H  G  F  S  T  I  M  E  P  N  Y  G  D  C  F  G  N  G  V  H  L  Y  P  A  N  I  D  G :   V  F  S  A  V  E  D  E  N  G  L  R  H  M  L  L  C  R  V  I  L  G  N  T  E  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28079" stop="28140"/>
                    <exon start="28219" stop="28575"/>
                    <exon start="29285" stop="29366"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLFSSDSEVESPSPRTNYHFRSLKSNEVMKLEEGDQDHDLIKAGFLSGMGQLGNEIEVVAVHKNSCSTILGQARSESFRIYSEAMRKKCSGDANIKYAWFGSSKDEICNIISHGFSTIMEPNYGDCFGNGVHLYPANIDGVFSAVEDENGLRHMLLCRVILGNTEVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="48012" PGL_stop="49289"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48012" e_stop="49289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="48012" e_stop="49289" e_length="1278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48012" stop="48439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48046" stop="48681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48053" stop="48757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48053" stop="48552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48061" stop="48876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48114" stop="48964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48695" stop="49289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48701" stop="49289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48701" stop="49275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48702" stop="49289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48702" stop="49198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48702" stop="49108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48716" stop="49127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48831" stop="49269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48896" stop="49269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTTATTTCAAACCCCCAATCCTCATCCTTCTTAAAAACTATATACTAAAAATATAAATATTCCTTCAAATTTTCAAAATTCTCTCTTTCTAATTTTCTTCAAAAATATATTATATTCAGATTTCTACAGTAAAATCAAATTTTGGGTTTTGGTTTTTTGAAGAAAATGGATTCTGAAACGTTAACAGATTCGTATAATGAAGAAATGATGGGAACATTAACCGGAGATTTTACAGAGCAGTTGAGTATGAAAGAACAGATAATCGAAGAAGATTATGAGGATGACGAGGAAGAGGAGGTTGAAGATGAAGAAGAAGAGTTCTCTTTCGCGTGTGGGATAGACGCGCCGCCGATAGCCGCGGATGAGGTGTTTTACAATGGTCAAATTCGACCTCTGTTTCCATTGTTTAATCAGAGTCTTCTTTTATCTGACGAAGAATTGGAAGCTTTGAAGGAACAATTACCGATCAGGCCACCGGTGAAGAAGATATTTATACAAACGGAAGACAACCCAATTCCGGCGAGTTCAAATTCGTTAACGGAGAGTGAAGAAATCGTCGGACCCTTTTGTGAATGGTCAAAAAATAAAGCAATTGAAGCAACATCGGACAATCCTGAGGTTTGTAAAAAGAGTAATTCAACCGGATTTTCAAAGTTATGGAGATTTAAAGACTTTCTTCACCGGAGTAACAGTGACGGAAGAGATACCTTTGTATTCTTAAACCCAACAACTCCGGCAGCGAAAGTAGAGGAAAAAATTGTTCGGACAGATGAAACGACAACGTCGGAGAAGAAAAAGAAGGAGATCTCCGGCGAAGTGAAAGTCATCGGAAAAGTAACGAAGAAGATGAAGAAGGTTGTGAAGAAGAGTGAAGGGGTTTTAGCTCATGAAGCTTATATGAAGAGTAAAGCTAAAGCTGAAGATCGCCGGCGATCGTATCTTCCTTATCGGCCGGAGCTCGTCGGATTTTTCACAAATGTGAACGGTGGATTAACGAAGAATGTGCACCCATTCTAAGTCAATTTTTTTAAATTTAATTAATTTTAATATTATAGTAATGTAATTTGCTTAGTCAATAATTAGATTTGCTTGATTTAGATCATGGCCTAAGGGATTATGAGGTATAAGTTGGCCTTTTTTCCCCTTGTATGATATGTAAAATCTTTAATTCATCATATAATTATGTACTTAGAGAATCCGATCTTTAGAAAACTTTTTCTATTTTTACGAGAAAATAATAATATTGTATATTTATATTTTTTTTAATTTTTATTA</gDNA_template>
            <first_frame> S  F  I  S  N  P  Q  S  S  S  F  L  K  T  I  Y  *  K  Y  K  Y  S  F  K  F  S  K  F  S  L  S  N  F  L  Q  K  Y  I  I  F  R  F  L  Q  *  N  Q  I  L  G  F  G  F  L  K  K  M  D  S  E  T  L  T  D  S  Y  N  E  E  M  M  G  T  L  T  G  D  F  T  E  Q  L  S  M  K  E  Q  I  I  E  E  D  Y  E  D  D  E  E  E  E  V  E  D  E  E  E  E  F  S  F  A  C  G  I  D  A  P  P  I  A  A  D  E  V  F  Y  N  G  Q  I  R  P  L  F  P  L  F  N  Q  S  L  L  L  S  D  E  E  L  E  A  L  K  E  Q  L  P  I  R  P  P  V  K  K  I  F  I  Q  T  E  D  N  P  I  P  A  S  S  N  S  L  T  E  S  E  E  I  V  G  P  F  C  E  W  S  K  N  K  A  I  E  A  T  S  D  N  P  E  V  C  K  K  S  N  S  T  G  F  S  K  L  W  R  F  K  D  F  L  H  R  S  N  S  D  G  R  D  T  F  V  F  L  N  P  T  T  P  A  A  K  V  E  E  K  I  V  R  T  D  E  T  T  T  S  E  K  K  K  K  E  I  S  G  E  V  K  V  I  G  K  V  T  K  K  M  K  K  V  V  K  K  S  E  G  V  L  A  H  E  A  Y  M  K  S  K  A  K  A  E  D  R  R  R  S  Y  L  P  Y  R  P  E  L  V  G  F  F  T  N  V  N  G  G  L  T  K  N  V  H  P  F  *  V  N  F  F  K  F  N  *  F  *  Y  Y  S  N  V  I  C  L  V  N  N  *  I  C  L  I  *  I  M  A  *  G  I  M  R  Y  K  L  A  F  F  P  L  V  *  Y  V  K  S  L  I  H  H  I  I  M  Y  L  E  N  P  I  F  R  K  L  F  L  F  L  R  E  N  N  N  I  V  Y  L  Y  F  F  *  F  L  L </first_frame>
            <second_frame>  H  L  F  Q  T  P  N  P  H  P  S  *  K  L  Y  T  K  N  I  N  I  P  S  N  F  Q  N  S  L  F  L  I  F  F  K  N  I  L  Y  S  D  F  Y  S  K  I  K  F  W  V  L  V  F  *  R  K  W  I  L  K  R  *  Q  I  R  I  M  K  K  *  W  E  H  *  P  E  I  L  Q  S  S  *  V  *  K  N  R  *  S  K  K  I  M  R  M  T  R  K  R  R  L  K  M  K  K  K  S  S  L  S  R  V  G  *  T  R  R  R  *  P  R  M  R  C  F  T  M  V  K  F  D  L  C  F  H  C  L  I  R  V  F  F  Y  L  T  K  N  W  K  L  *  R  N  N  Y  R  S  G  H  R  *  R  R  Y  L  Y  K  R  K  T  T  Q  F  R  R  V  Q  I  R  *  R  R  V  K  K  S  S  D  P  F  V  N  G  Q  K  I  K  Q  L  K  Q  H  R  T  I  L  R  F  V  K  R  V  I  Q  P  D  F  Q  S  Y  G  D  L  K  T  F  F  T  G  V  T  V  T  E  E  I  P  L  Y  S  *  T  Q  Q  L  R  Q  R  K  *  R  K  K  L  F  G  Q  M  K  R  Q  R  R  R  R  K  R  R  R  S  P  A  K  *  K  S  S  E  K  *  R  R  R  *  R  R  L  *  R  R  V  K  G  F  *  L  M  K  L  I  *  R  V  K  L  K  L  K  I  A  G  D  R  I  F  L  I  G  R  S  S  S  D  F  S  Q  M  *  T  V  D  *  R  R  M  C  T  H  S  K  S  I  F  L  N  L  I  N  F  N  I  I  V  M  *  F  A  *  S  I  I  R  F  A  *  F  R  S  W  P  K  G  L  *  G  I  S  W  P  F  F  P  L  Y  D  M  *  N  L  *  F  I  I  *  L  C  T  *  R  I  R  S  L  E  N  F  F  Y  F  Y  E  K  I  I  I  L  Y  I  Y  I  F  F  N  F  Y   </second_frame>
            <third_frame>   I  Y  F  K  P  P  I  L  I  L  L  K  N  Y  I  L  K  I  *  I  F  L  Q  I  F  K  I  L  S  F  *  F  S  S  K  I  Y  Y  I  Q  I  S  T  V  K  S  N  F  G  F  W  F  F  E  E  N  G  F  *  N  V  N  R  F  V  *  *  R  N  D  G  N  I  N  R  R  F  Y  R  A  V  E  Y  E  R  T  D  N  R  R  R  L  *  G  *  R  G  R  G  G  *  R  *  R  R  R  V  L  F  R  V  W  D  R  R  A  A  D  S  R  G  *  G  V  L  Q  W  S  N  S  T  S  V  S  I  V  *  S  E  S  S  F  I  *  R  R  I  G  S  F  E  G  T  I  T  D  Q  A  T  G  E  E  D  I  Y  T  N  G  R  Q  P  N  S  G  E  F  K  F  V  N  G  E  *  R  N  R  R  T  L  L  *  M  V  K  K  *  S  N  *  S  N  I  G  Q  S  *  G  L  *  K  E  *  F  N  R  I  F  K  V  M  E  I  *  R  L  S  S  P  E  *  Q  *  R  K  R  Y  L  C  I  L  K  P  N  N  S  G  S  E  S  R  G  K  N  C  S  D  R  *  N  D  N  V  G  E  E  K  E  G  D  L  R  R  S  E  S  H  R  K  S  N  E  E  D  E  E  G  C  E  E  E  *  R  G  F  S  S  *  S  L  Y  E  E  *  S  *  S  *  R  S  P  A  I  V  S  S  L  S  A  G  A  R  R  I  F  H  K  C  E  R  W  I  N  E  E  C  A  P  I  L  S  Q  F  F  *  I  *  L  I  L  I  L  *  *  C  N  L  L  S  Q  *  L  D  L  L  D  L  D  H  G  L  R  D  Y  E  V  *  V  G  L  F  S  P  C  M  I  C  K  I  F  N  S  S  Y  N  Y  V  L  R  E  S  D  L  *  K  T  F  S  I  F  T  R  K  *  *  Y  C  I  F  I  F  F  L  I  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48147" stop="49031"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQILGFGFLKKMDSETLTDSYNEEMMGTLTGDFTEQLSMKEQIIEEDYEDDEEEEVEDEEEEFSFACGIDAPPIAADEVFYNGQIRPLFPLFNQSLLLSDEELEALKEQLPIRPPVKKIFIQTEDNPIPASSNSLTESEEIVGPFCEWSKNKAIEATSDNPEVCKKSNSTGFSKLWRFKDFLHRSNSDGRDTFVFLNPTTPAAKVEEKIVRTDETTTSEKKKKEISGEVKVIGKVTKKMKKVVKKSEGVLAHEAYMKSKAKAEDRRRSYLPYRPELVGFFTNVNGGLTKNVHPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="62675" PGL_stop="53902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62675" e_stop="62433"/>
            <exon e_start="61038" e_stop="60829"/>
            <exon e_start="59761" e_stop="59715"/>
            <exon e_start="58750" e_stop="58634"/>
            <exon e_start="57936" e_stop="57817"/>
            <exon e_start="57252" e_stop="57158"/>
            <exon e_start="57066" e_stop="56973"/>
            <exon e_start="55777" e_stop="55646"/>
            <exon e_start="54904" e_stop="54792"/>
            <exon e_start="54356" e_stop="53902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.978" e_score="0.986"/>
          <exon-intron don_prob="0.548" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.705" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.832" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.833" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="62675" e_stop="62433" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.978">
            <gDNA_intron_boundary i_start="62432" i_stop="61039" i_length="1394"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61038" e_stop="60829" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.548" acc_prob="0.995">
            <gDNA_intron_boundary i_start="60828" i_stop="59762" i_length="1067"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59761" e_stop="59715" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.987">
            <gDNA_intron_boundary i_start="59714" i_stop="58751" i_length="964"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58750" e_stop="58634" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.705">
            <gDNA_intron_boundary i_start="58633" i_stop="57937" i_length="697"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57936" e_stop="57817" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57816" i_stop="57253" i_length="564"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="57252" e_stop="57158" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57157" i_stop="57067" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="57066" e_stop="56973" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.867">
            <gDNA_intron_boundary i_start="56972" i_stop="55778" i_length="1195"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55777" e_stop="55646" e_length="132"/>
          </exon>
          <intron i_serial="8" don_prob="0.832" acc_prob="0.978">
            <gDNA_intron_boundary i_start="55645" i_stop="54905" i_length="741"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54904" e_stop="54792" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.833">
            <gDNA_intron_boundary i_start="54791" i_stop="54357" i_length="435"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="54356" e_stop="53902" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62675" stop="62433"/>
              <exon start="61038" stop="60829"/>
              <exon start="59761" stop="59715"/>
              <exon start="58750" stop="58634"/>
              <exon start="57936" stop="57817"/>
              <exon start="57252" stop="57158"/>
              <exon start="57066" stop="56973"/>
              <exon start="55777" stop="55646"/>
              <exon start="54904" stop="54792"/>
              <exon start="54356" stop="53918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62664" stop="62494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62659" stop="62433"/>
              <exon start="61038" stop="60829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62652" stop="62433"/>
              <exon start="61038" stop="60834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62649" stop="62433"/>
              <exon start="61038" stop="60829"/>
              <exon start="59761" stop="59723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62511" stop="62433"/>
              <exon start="61038" stop="60829"/>
              <exon start="59761" stop="59715"/>
              <exon start="58750" stop="58634"/>
              <exon start="57936" stop="57817"/>
              <exon start="57252" stop="57164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58654" stop="58634"/>
              <exon start="57936" stop="57817"/>
              <exon start="57252" stop="57158"/>
              <exon start="57066" stop="56973"/>
              <exon start="55777" stop="55646"/>
              <exon start="54904" stop="54792"/>
              <exon start="54356" stop="54246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57885" stop="57817"/>
              <exon start="57252" stop="57158"/>
              <exon start="57066" stop="56973"/>
              <exon start="55777" stop="55646"/>
              <exon start="54904" stop="54792"/>
              <exon start="54356" stop="54232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55763" stop="55646"/>
              <exon start="54904" stop="54792"/>
              <exon start="54356" stop="54107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55663" stop="55646"/>
              <exon start="54904" stop="54792"/>
              <exon start="54356" stop="53902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54296" stop="53912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272971" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54295" stop="53917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCATGACTAATGAAGTACTCAGTAGCTCTTTTTTGAACAAAATTCTATATATTCTTCGCCGATCGTGATTTTGTTTATTCATGACAGTTAGAAAATTCTATTTTTCCACTTAATTGAGTGTTCAATTTGAAGAAGAAGTGGAGGAGGATCCGATATGGAGGTGAAGGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATCGACATTGGAG : GCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTCAGTGGCAGGCTTTATTTCATTAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAAAAATGCG : GTGCTCAATGTCATCATTCTCACGCTGTTGACAAGATCAAGATTAAG : GCAACAGGTGGTGGAGCTTTCAAGTTTGCCGATCTATTCAAAGAAAAACTTGGCCTAACTCTGGACAAGGTAGAGGAAATGGAGTCTCTTGTTACCGGAGCAAATTTTCTGCTTAAG : GCTGCCAATCATGAAGTTTATACATATATTGGAGGTCAAAAGGAGTATGTGCAGATAGATCAGAATGATTTATATCCCTACCTCCTTGTCAACATTGGGTCTGGGGTTAGCATGATAAAG : GTAGATGGAGATGGGAAATTTCAGAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGACTAGGGAAACTTTTGACTAAATGCCAAAG : TTTTGATGAGTTGCTGGAACTGAGCCATCTGGGAAATAACAGAGTGATAGACATGCTCGTTGGAGATATTTACGGGGGATTGGACTATTCAAAG : ATTGGCCTTGCATCAACAGCCATAGCGTCTAGCTTCGGTAAGGCGATCTCAGAAAACAAAGAGCTCGAAGACTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAG : ATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTG : GTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAGGTCAAAAGGTGTTGACCTATGAAACAACTAGCATATGTACAAAAATTAACGAGGATGTCAAAAGAATCTGTTGTTTCTATTCCTAGTTAAGTAAGCAACAAAATTTCAGATTTATATGTATATGTATTTGTCCTGCAATAGATTTGTAGAACCTTGACATGTGATGAAGTGAGAAATGTTATTAACACTAGTTCAGCACCTCTTG</gDNA_template>
            <first_frame> P  M  T  N  E  V  L  S  S  S  F  L  N  K  I  L  Y  I  L  R  R  S  *  F  C  L  F  M  T  V  R  K  F  Y  F  S  T  *  L  S  V  Q  F  E  E  E  V  E  E  D  P  I  W  R  *  R  E  L  M  G  N  *  K  R  V  I  P  L  L  L  M  K  F  H  I  C  L  S  T  L  E  :  A  P  S  S  R  L  Y  T  F  Q  P  T  V  S  A  A  Q  M  M  R  H  Q  R  Y  Q  K  K  D  R  K  F  P  M  E  T  L  T  I  T  F  S  V  A  G  F  I  S  L  N  S  R  L  A  R  L  R  T  A  *  S  F  C  L  P  R  N  F  K  N  A  :  V  L  N  V  I  I  L  T  L  L  T  R  S  R  L  R :   Q  Q  V  V  E  L  S  S  L  P  I  Y  S  K  K  N  L  A  *  L  W  T  R  *  R  K  W  S  L  L  L  P  E  Q  I  F  C  L  R :   L  P  I  M  K  F  I  H  I  L  E  V  K  R  S  M  C  R  *  I  R  M  I  Y  I  P  T  S  L  S  T  L  G  L  G  L  A  *  *  R :   *  M  E  M  G  N  F  R  E  L  V  E  L  A  S  V  V  A  L  S  W  D  *  G  N  F  *  L  N  A  K   : V  L  M  S  C  W  N  *  A  I  W  E  I  T  E  *  *  T  C  S  L  E  I  F  T  G  D  W  T  I  Q  R :   L  A  L  H  Q  Q  P  *  R  L  A  S  V  R  R  S  Q  K  T  K  S  S  K  T  T  N  Q  K  T  L  P  G  P  S  *  G  *  S  Q  I  T  S  D  R :   L  H  T  *  M  L  F  V  L  G  S  S  G  S  F  W  E  D  S  S  S  A  T  M  L  I  Q  W  T  Q  S  P  L  Q  L  I  S   : G  R  R  V  R  P  K  Q  C  S  C  G  M  R  D  F  L  E  P  *  E  L  S  *  T  T  K  M  E  V  Q  I  P  C  P  L  S  *  L  S  N  K  P  P  R  G  V  Q  V  A  *  S  I  G  F  I  T  L  R  M  C  R  K  M  K  M  A  P  Q  T  V  D  C  E  L  V  A  H  L  K  F  M  M  R  S  K  G  V  D  L  *  N  N  *  H  M  Y  K  N  *  R  G  C  Q  K  N  L  L  F  L  F  L  V  K  *  A  T  K  F  Q  I  Y  M  Y  M  Y  L  S  C  N  R  F  V  E  P  *  H  V  M  K  *  E  M  L  L  T  L  V  Q  H  L  L </first_frame>
            <second_frame>  P  *  L  M  K  Y  S  V  A  L  F  *  T  K  F  Y  I  F  F  A  D  R  D  F  V  Y  S  *  Q  L  E  N  S  I  F  P  L  N  *  V  F  N  L  K  K  K  W  R  R  I  R  Y  G  G  E  G  N  *  W  E  I  R  K  E  *  F  H  F  C  *  *  N  F  T  F  V  Y  R  H  W  R :   L  P  H  Q  D  C  I  L  F  N  Q  Q  *  V  Q  H  K  *  *  G  T  N  V  I  K  R  K  T  G  S  S  Q  W  R  P  *  P  S  H  S  Q  W  Q  A  L  F  H  *  I  R  D  *  Q  D  *  G  L  H  K  V  F  V  F  Q  E  T  S  K  M  R :   C  S  M  S  S  F  S  R  C  *  Q  D  Q  D  *   : G  N  R  W  W  S  F  Q  V  C  R  S  I  Q  R  K  T  W  P  N  S  G  Q  G  R  G  N  G  V  S  C  Y  R  S  K  F  S  A  *   : G  C  Q  S  *  S  L  Y  I  Y  W  R  S  K  G  V  C  A  D  R  S  E  *  F  I  S  L  P  P  C  Q  H  W  V  W  G  *  H  D  K   : G  R  W  R  W  E  I  S  E  S  *  W  N  *  R  R  W  W  H  F  L  G  T  R  E  T  F  D  *  M  P  K  :  F  *  *  V  A  G  T  E  P  S  G  K  *  Q  S  D  R  H  A  R  W  R  Y  L  R  G  I  G  L  F  K   : D  W  P  C  I  N  S  H  S  V  *  L  R  *  G  D  L  R  K  Q  R  A  R  R  L  Q  T  R  R  H  C  P  V  P  L  K  D  D  L  K  *  H  R  T   : D  C  I  L  E  C  S  S  F  W  A  Q  A  D  L  F  G  R  I  L  H  P  R  P  C  L  Y  N  G  H  N  L  R  C  S  *  F  L  :  V  E  G  *  G  Q  S  N  V  L  A  A  *  G  I  S  W  S  P  R  S  F  H  E  L  Q  R  W  K  Y  R  F  H  A  P  S  V  S  *  A  T  S  R  Q  E  E  F  K  L  H  S  R  *  D  S  *  L  Y  A  C  A  G  K  *  K  W  R  H  R  L  *  I  A  S  *  *  L  I  *  N  L  *  *  G  Q  K  V  L  T  Y  E  T  T  S  I  C  T  K  I  N  E  D  V  K  R  I  C  C  F  Y  S  *  L  S  K  Q  Q  N  F  R  F  I  C  I  C  I  C  P  A  I  D  L  *  N  L  D  M  *  *  S  E  K  C  Y  *  H  *  F  S  T  S   </second_frame>
            <third_frame>   H  D  *  *  S  T  Q  *  L  F  F  E  Q  N  S  I  Y  S  S  P  I  V  I  L  F  I  H  D  S  *  K  I  L  F  F  H  L  I  E  C  S  I  *  R  R  S  G  G  G  S  D  M  E  V  K  G  I  D  G  K  L  E  K  S  D  S  T  S  A  D  E  I  S  H  L  S  I  D  I  G   : G  S  L  I  K  I  V  Y  F  S  T  N  S  K  C  S  T  N  D  E  A  P  T  L  S  K  E  R  Q  E  V  P  N  G  D  L  N  H  H  I  L  S  G  R  L  Y  F  I  K  F  E  T  S  K  I  E  D  C  I  K  F  L  S  S  K  K  L  Q  K  C   : G  A  Q  C  H  H  S  H  A  V  D  K  I  K  I  K  :  A  T  G  G  G  A  F  K  F  A  D  L  F  K  E  K  L  G  L  T  L  D  K  V  E  E  M  E  S  L  V  T  G  A  N  F  L  L  K  :  A  A  N  H  E  V  Y  T  Y  I  G  G  Q  K  E  Y  V  Q  I  D  Q  N  D  L  Y  P  Y  L  L  V  N  I  G  S  G  V  S  M  I  K  :  V  D  G  D  G  K  F  Q  R  V  S  G  T  S  V  G  G  G  T  F  L  G  L  G  K  L  L  T  K  C  Q  S :   F  D  E  L  L  E  L  S  H  L  G  N  N  R  V  I  D  M  L  V  G  D  I  Y  G  G  L  D  Y  S  K  :  I  G  L  A  S  T  A  I  A  S  S  F  G  K  A  I  S  E  N  K  E  L  E  D  Y  K  P  E  D  I  A  R  S  L  L  R  M  I  S  N  N  I  G  Q  :  I  A  Y  L  N  A  L  R  F  G  L  K  R  I  F  L  G  G  F  F  I  R  D  H  A  Y  T  M  D  T  I  S  V  A  V  D  F  W :   S  K  G  E  A  K  A  M  F  L  R  H  E  G  F  L  G  A  L  G  A  F  M  N  Y  K  D  G  S  T  D  S  M  P  P  Q  L  V  E  Q  Q  A  A  K  R  S  S  S  C  I  V  D  R  I  H  N  S  T  H  V  Q  E  N  E  N  G  A  T  D  C  R  L  R  V  S  S  S  F  K  I  Y  D  E  V  K  R  C  *  P  M  K  Q  L  A  Y  V  Q  K  L  T  R  M  S  K  E  S  V  V  S  I  P  S  *  V  S  N  K  I  S  D  L  Y  V  Y  V  F  V  L  Q  *  I  C  R  T  L  T  C  D  E  V  R  N  V  I  N  T  S  S  A  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62544" stop="62433"/>
                    <exon start="61038" stop="60829"/>
                    <exon start="59761" stop="59715"/>
                    <exon start="58750" stop="58634"/>
                    <exon start="57936" stop="57817"/>
                    <exon start="57252" stop="57158"/>
                    <exon start="57066" stop="56973"/>
                    <exon start="55777" stop="55646"/>
                    <exon start="54904" stop="54792"/>
                    <exon start="54356" stop="54092"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1302</number_coding_nucleotides>
                  <number_encoded_amino_acids>434</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRSGGGSDMEVKGIDGKLEKSDSTSADEISHLSIDIGGSLIKIVYFSTNSKCSTNDEAPTLSKERQEVPNGDLNHHILSGRLYFIKFETSKIEDCIKFLSSKKLQKCGAQCHHSHAVDKIKIKATGGGAFKFADLFKEKLGLTLDKVEEMESLVTGANFLLKAANHEVYTYIGGQKEYVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFQRVSGTSVGGGTFLGLGKLLTKCQSFDELLELSHLGNNRVIDMLVGDIYGGLDYSKIGLASTAIASSFGKAISENKELEDYKPEDIARSLLRMISNNIGQIAYLNALRFGLKRIFLGGFFIRDHAYTMDTISVAVDFWSKGEAKAMFLRHEGFLGALGAFMNYKDGSTDSMPPQLVEQQAAKRSSSCIVDRIHNSTHVQENENGATDCRLRVSSSFKIYDEVKRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55778" e_stop="55646"/>
            <exon e_start="54904" e_stop="54792"/>
            <exon e_start="54356" e_stop="53902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.832" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.833" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55778" e_stop="55646" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.832" acc_prob="0.978">
            <gDNA_intron_boundary i_start="55645" i_stop="54905" i_length="741"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54904" e_stop="54792" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.833">
            <gDNA_intron_boundary i_start="54791" i_stop="54357" i_length="435"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54356" e_stop="53902" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55778" stop="55646"/>
              <exon start="54904" stop="54792"/>
              <exon start="54356" stop="53923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554569" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55763" stop="55646"/>
              <exon start="54904" stop="54792"/>
              <exon start="54356" stop="54107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55663" stop="55646"/>
              <exon start="54904" stop="54792"/>
              <exon start="54356" stop="53902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54296" stop="53912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272971" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54295" stop="53917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTGGCCTTGCATCAACAGCCATAGCGTCTAGCTTCGGTAAGGCGATCTCAGAAAACAAAGAGCTCGAAGACTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAG : ATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTG : GTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAGCCGCCAAGAGGAGTTCAAGTTGCATAGTCGATAGGATTCATAACTCTACGCATGTGCAGGAAAATGAAAATGGCGCCACAGACTGTAGATTGCGAGTTAGTAGCTCATTTAAAATTTATGATGAGGTCAAAAGGTGTTGACCTATGAAACAACTAGCATATGTACAAAAATTAACGAGGATGTCAAAAGAATCTGTTGTTTCTATTCCTAGTTAAGTAAGCAACAAAATTTCAGATTTATATGTATATGTATTTGTCCTGCAATAGATTTGTAGAACCTTGACATGTGATGAAGTGAGAAATGTTATTAACACTAGTTCAGCACCTCTTG</gDNA_template>
            <first_frame> D  W  P  C  I  N  S  H  S  V  *  L  R  *  G  D  L  R  K  Q  R  A  R  R  L  Q  T  R  R  H  C  P  V  P  L  K  D  D  L  K  *  H  R  T   : D  C  I  L  E  C  S  S  F  W  A  Q  A  D  L  F  G  R  I  L  H  P  R  P  C  L  Y  N  G  H  N  L  R  C  S  *  F  L  :  V  E  G  *  G  Q  S  N  V  L  A  A  *  G  I  S  W  S  P  R  S  F  H  E  L  Q  R  W  K  Y  R  F  H  A  P  S  V  S  *  A  T  S  R  Q  E  E  F  K  L  H  S  R  *  D  S  *  L  Y  A  C  A  G  K  *  K  W  R  H  R  L  *  I  A  S  *  *  L  I  *  N  L  *  *  G  Q  K  V  L  T  Y  E  T  T  S  I  C  T  K  I  N  E  D  V  K  R  I  C  C  F  Y  S  *  L  S  K  Q  Q  N  F  R  F  I  C  I  C  I  C  P  A  I  D  L  *  N  L  D  M  *  *  S  E  K  C  Y  *  H  *  F  S  T  S   </first_frame>
            <second_frame>  I  G  L  A  S  T  A  I  A  S  S  F  G  K  A  I  S  E  N  K  E  L  E  D  Y  K  P  E  D  I  A  R  S  L  L  R  M  I  S  N  N  I  G  Q  :  I  A  Y  L  N  A  L  R  F  G  L  K  R  I  F  L  G  G  F  F  I  R  D  H  A  Y  T  M  D  T  I  S  V  A  V  D  F  W :   S  K  G  E  A  K  A  M  F  L  R  H  E  G  F  L  G  A  L  G  A  F  M  N  Y  K  D  G  S  T  D  S  M  P  P  Q  L  V  E  Q  Q  A  A  K  R  S  S  S  C  I  V  D  R  I  H  N  S  T  H  V  Q  E  N  E  N  G  A  T  D  C  R  L  R  V  S  S  S  F  K  I  Y  D  E  V  K  R  C  *  P  M  K  Q  L  A  Y  V  Q  K  L  T  R  M  S  K  E  S  V  V  S  I  P  S  *  V  S  N  K  I  S  D  L  Y  V  Y  V  F  V  L  Q  *  I  C  R  T  L  T  C  D  E  V  R  N  V  I  N  T  S  S  A  P  L  </second_frame>
            <third_frame>   L  A  L  H  Q  Q  P  *  R  L  A  S  V  R  R  S  Q  K  T  K  S  S  K  T  T  N  Q  K  T  L  P  G  P  S  *  G  *  S  Q  I  T  S  D  R :   L  H  T  *  M  L  F  V  L  G  S  S  G  S  F  W  E  D  S  S  S  A  T  M  L  I  Q  W  T  Q  S  P  L  Q  L  I  S   : G  R  R  V  R  P  K  Q  C  S  C  G  M  R  D  F  L  E  P  *  E  L  S  *  T  T  K  M  E  V  Q  I  P  C  P  L  S  *  L  S  N  K  P  P  R  G  V  Q  V  A  *  S  I  G  F  I  T  L  R  M  C  R  K  M  K  M  A  P  Q  T  V  D  C  E  L  V  A  H  L  K  F  M  M  R  S  K  G  V  D  L  *  N  N  *  H  M  Y  K  N  *  R  G  C  Q  K  N  L  L  F  L  F  L  V  K  *  A  T  K  F  Q  I  Y  M  Y  M  Y  L  S  C  N  R  F  V  E  P  *  H  V  M  K  *  E  M  L  L  T  L  V  Q  H  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55777" stop="55646"/>
                    <exon start="54904" stop="54792"/>
                    <exon start="54356" stop="54092"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGLASTAIASSFGKAISENKELEDYKPEDIARSLLRMISNNIGQIAYLNALRFGLKRIFLGGFFIRDHAYTMDTISVAVDFWSKGEAKAMFLRHEGFLGALGAFMNYKDGSTDSMPPQLVEQQAAKRSSSCIVDRIHNSTHVQENENGATDCRLRVSSSFKIYDEVKRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="68711" PGL_stop="67656"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68711" e_stop="68563"/>
            <exon e_start="68379" e_stop="68274"/>
            <exon e_start="68100" e_stop="68020"/>
            <exon e_start="67929" e_stop="67656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.423" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68711" e_stop="68563" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.423" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68562" i_stop="68380" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68379" e_stop="68274" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68273" i_stop="68101" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68100" e_stop="68020" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="68019" i_stop="67930" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="67929" e_stop="67656" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68711" stop="68563"/>
              <exon start="68379" stop="68274"/>
              <exon start="68100" stop="68020"/>
              <exon start="67929" stop="67656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTTCCTCTTCTTCTTGAGTAAAATAAAATATTATCCTATTTGTTTTGTCCATTTCCTTCAAAAGTTACTAAAATATGTATCAACAAAACCAGGAGTACTACCATTTTCCTTGTTTGTGTTGCAACCCTCATACTTACATTAGAATG : GTACAAAATATGATCGAGAGGTGCTTAGTGGTTGGGATGGATAGAGATGAATGCATTAAGACACTAGCTATACATGCCAGAATCCGCCCACTCGTAACACTAACAG : TGTGGAGAGAGCTTATAAAGGAGAACAAGGACTTCTTTCAAGCATATTTCACAAACATATCAACACCATTACCCTCCTTAG : GCTTTCAAAGAGAACCAAGATTTGGGAGAAGGAAACTATATTATTGGCAGTAATTGAAGAATGAAGAACAAAATTTCTAGCCAGGATGTAATATATTTATGCGTTTTGAATCATAATCTTTTTTATTTACTAGATTCTGAATATATTGCATATATACATATTTATATATATATCAAACAAATCTTTGTATGTTTTGGAGCTCAAAATCGTACTTTAAGAATGTATATGAGTTCCAATATAAGAAGGGATAATGCATAACCAATTCATAAATTTA</gDNA_template>
            <first_frame> Y  F  P  L  L  L  E  *  N  K  I  L  S  Y  L  F  C  P  F  P  S  K  V  T  K  I  C  I  N  K  T  R  S  T  T  I  F  L  V  C  V  A  T  L  I  L  T  L  E  W :   Y  K  I  *  S  R  G  A  *  W  L  G  W  I  E  M  N  A  L  R  H  *  L  Y  M  P  E  S  A  H  S  *  H  *  Q  :  C  G  E  S  L  *  R  R  T  R  T  S  F  K  H  I  S  Q  T  Y  Q  H  H  Y  P  P  *  :  A  F  K  E  N  Q  D  L  G  E  G  N  Y  I  I  G  S  N  *  R  M  K  N  K  I  S  S  Q  D  V  I  Y  L  C  V  L  N  H  N  L  F  Y  L  L  D  S  E  Y  I  A  Y  I  H  I  Y  I  Y  I  K  Q  I  F  V  C  F  G  A  Q  N  R  T  L  R  M  Y  M  S  S  N  I  R  R  D  N  A  *  P  I  H  K  F  </first_frame>
            <second_frame>  I  F  L  F  F  L  S  K  I  K  Y  Y  P  I  C  F  V  H  F  L  Q  K  L  L  K  Y  V  S  T  K  P  G  V  L  P  F  S  L  F  V  L  Q  P  S  Y  L  H  *  N   : G  T  K  Y  D  R  E  V  L  S  G  W  D  G  *  R  *  M  H  *  D  T  S  Y  T  C  Q  N  P  P  T  R  N  T  N  S :   V  E  R  A  Y  K  G  E  Q  G  L  L  S  S  I  F  H  K  H  I  N  T  I  T  L  L  R :   L  S  K  R  T  K  I  W  E  K  E  T  I  L  L  A  V  I  E  E  *  R  T  K  F  L  A  R  M  *  Y  I  Y  A  F  *  I  I  I  F  F  I  Y  *  I  L  N  I  L  H  I  Y  I  F  I  Y  I  S  N  K  S  L  Y  V  L  E  L  K  I  V  L  *  E  C  I  *  V  P  I  *  E  G  I  M  H  N  Q  F  I  N  L </second_frame>
            <third_frame>   F  S  S  S  S  *  V  K  *  N  I  I  L  F  V  L  S  I  S  F  K  S  Y  *  N  M  Y  Q  Q  N  Q  E  Y  Y  H  F  P  C  L  C  C  N  P  H  T  Y  I  R  M  :  V  Q  N  M  I  E  R  C  L  V  V  G  M  D  R  D  E  C  I  K  T  L  A  I  H  A  R  I  R  P  L  V  T  L  T   : V  W  R  E  L  I  K  E  N  K  D  F  F  Q  A  Y  F  T  N  I  S  T  P  L  P  S  L   : G  F  Q  R  E  P  R  F  G  R  R  K  L  Y  Y  W  Q  *  L  K  N  E  E  Q  N  F  *  P  G  C  N  I  F  M  R  F  E  S  *  S  F  L  F  T  R  F  *  I  Y  C  I  Y  T  Y  L  Y  I  Y  Q  T  N  L  C  M  F  W  S  S  K  S  Y  F  K  N  V  Y  E  F  Q  Y  K  K  G  *  C  I  T  N  S  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68637" stop="68563"/>
                    <exon start="68379" stop="68274"/>
                    <exon start="68100" stop="68020"/>
                    <exon start="67929" stop="67877"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMYQQNQEYYHFPCLCCNPHTYIRMVQNMIERCLVVGMDRDECIKTLAIHARIRPLVTLTVWRELIKENKDFFQAYFTNISTPLPSLGFQREPRFGRRKLYYWQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67872" stop="67672"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMKNKISSQDVIYLCVLNHNLFYLLDSEYIAYIHIYIYIKQIFVCFGAQNRTLRMYMSSNIRRDNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="73963" PGL_stop="77275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74126" e_stop="74276"/>
            <exon e_start="75548" e_stop="75698"/>
            <exon e_start="77044" e_stop="77275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74126" e_stop="74276" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="74277" i_stop="75547" i_length="1271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75548" e_stop="75698" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.984">
            <gDNA_intron_boundary i_start="75699" i_stop="77043" i_length="1345"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77044" e_stop="77275" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74126" stop="74276"/>
              <exon start="75548" stop="75698"/>
              <exon start="77044" stop="77265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74146" stop="74276"/>
              <exon start="75548" stop="75698"/>
              <exon start="77044" stop="77275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCCCAAGATTGGATTTTTTTTGAAGAAAAATTGTGGGGTTTTGGTTTGACTTGCATAGGGATTTGCAGGATCAAGATGGGTTCATTTTGTTGAAGAAGTTCAAGTTAAAAAAGCTATCTTTACACCCCTTTTTAAGTTATTGGTTTTGG : GTGAACTTGCTCAGTATCTGAGTAGATTTTCCTTGGAAAATGTATAGAGGCAATGGCAATGGCACTAACACTCAACTTCCAATTTTCGTGGATGCGAATGGTTTCCAGTATCCTCCTAGTGCACCAAATCAACTTCAATTATTCGGAAGCT : TGCCACTTGGATCCTCTGCTGATCCTGTAAATTATTTTGTAAATGAGCATGCTACGCCTATGATTCGGCATAATCGAGGAAGCGAAGCAGGTGTTTCCAGGCAGCAAAAGCTTCAATTTTCCTTGAATCATAATTTGGTTCATGATGACACTGAACGGCCAGCAAATGTTCCTGCCCAAAATCCTGTATCTACTGGTTTAAAGCTATCATATGATGACGATGAACCCAACTC</gDNA_template>
            <first_frame> I  P  K  I  G  F  F  L  K  K  N  C  G  V  L  V  *  L  A  *  G  F  A  G  S  R  W  V  H  F  V  E  E  V  Q  V  K  K  A  I  F  T  P  L  F  K  L  L  V  L   : G  E  L  A  Q  Y  L  S  R  F  S  L  E  N  V  *  R  Q  W  Q  W  H  *  H  S  T  S  N  F  R  G  C  E  W  F  P  V  S  S  *  C  T  K  S  T  S  I  I  R  K  L :   A  T  W  I  L  C  *  S  C  K  L  F  C  K  *  A  C  Y  A  Y  D  S  A  *  S  R  K  R  S  R  C  F  Q  A  A  K  A  S  I  F  L  E  S  *  F  G  S  *  *  H  *  T  A  S  K  C  S  C  P  K  S  C  I  Y  W  F  K  A  I  I  *  *  R  *  T  Q  L </first_frame>
            <second_frame>  F  P  R  L  D  F  F  *  R  K  I  V  G  F  W  F  D  L  H  R  D  L  Q  D  Q  D  G  F  I  L  L  K  K  F  K  L  K  K  L  S  L  H  P  F  L  S  Y  W  F  W  :  V  N  L  L  S  I  *  V  D  F  P  W  K  M  Y  R  G  N  G  N  G  T  N  T  Q  L  P  I  F  V  D  A  N  G  F  Q  Y  P  P  S  A  P  N  Q  L  Q  L  F  G  S   : L  P  L  G  S  S  A  D  P  V  N  Y  F  V  N  E  H  A  T  P  M  I  R  H  N  R  G  S  E  A  G  V  S  R  Q  Q  K  L  Q  F  S  L  N  H  N  L  V  H  D  D  T  E  R  P  A  N  V  P  A  Q  N  P  V  S  T  G  L  K  L  S  Y  D  D  D  E  P  N   </second_frame>
            <third_frame>   S  Q  D  W  I  F  F  E  E  K  L  W  G  F  G  L  T  C  I  G  I  C  R  I  K  M  G  S  F  C  *  R  S  S  S  *  K  S  Y  L  Y  T  P  F  *  V  I  G  F  G :   *  T  C  S  V  S  E  *  I  F  L  G  K  C  I  E  A  M  A  M  A  L  T  L  N  F  Q  F  S  W  M  R  M  V  S  S  I  L  L  V  H  Q  I  N  F  N  Y  S  E  A  :  C  H  L  D  P  L  L  I  L  *  I  I  L  *  M  S  M  L  R  L  *  F  G  I  I  E  E  A  K  Q  V  F  P  G  S  K  S  F  N  F  P  *  I  I  I  W  F  M  M  T  L  N  G  Q  Q  M  F  L  P  K  I  L  Y  L  L  V  *  S  Y  H  M  M  T  M  N  P  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75569" stop="75698"/>
                    <exon start="77044" stop="77273"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDFPWKMYRGNGNGTNTQLPIFVDANGFQYPPSAPNQLQLFGSLPLGSSADPVNYFVNEHATPMIRHNRGSEAGVSRQQKLQFSLNHNLVHDDTERPANVPAQNPVSTGLKLSYDDDEPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74050" e_stop="74276"/>
            <exon e_start="75548" e_stop="75948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74050" e_stop="74276" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="74277" i_stop="75547" i_length="1271"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="75548" e_stop="75948" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74050" stop="74276"/>
              <exon start="75548" stop="75948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330479" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCCCCACCCCCAACAACATTTTTGTCACTATTCTTTTTTCAATTTTCATCTTTCTGCAGTTTCTTGTATGTAAGCATTCCCAAGATTGGATTTTTTTTGAAGAAAAATTGTGGGGTTTTGGTTTGACTTGCATAGGGATTTGCAGGATCAAGATGGGTTCATTTTGTTGAAGAAGTTCAAGTTAAAAAAGCTATCTTTACACCCCTTTTTAAGTTATTGGTTTTGG : GTGAACTTGCTCAGTATCTGAGTAGATTTTCCTTGGAAAATGTATAGAGGCAATGGCAATGGCACTAACACTCAACTTCCAATTTTCGTGGATGCGAATGGTTTCCAGTATCCTCCTAGTGCACCAAATCAACTTCAATTATTCGGAAGCTGTGAGTTTCTCTTCTATTAACATATGTAAATTGGATTGTGAGCTGTTCAGTATTTGTATATCATTCTCAACAGCATGGCAAGTATATGTATCTGTTTTTTTTTTTTCGCTTTTCAATCTATTGAACACTTGCTGCTATATCTTTATTTGTTCACGAAGATGCTTCTAGCTGTAAAGCTCTGTAAAATTATTGTAAATGGGTTTTGAACATTGTTTATTGTTATCGATTCTATGAACTTTCTGAATCACTA</gDNA_template>
            <first_frame> P  P  T  P  N  N  I  F  V  T  I  L  F  S  I  F  I  F  L  Q  F  L  V  C  K  H  S  Q  D  W  I  F  F  E  E  K  L  W  G  F  G  L  T  C  I  G  I  C  R  I  K  M  G  S  F  C  *  R  S  S  S  *  K  S  Y  L  Y  T  P  F  *  V  I  G  F  G :   *  T  C  S  V  S  E  *  I  F  L  G  K  C  I  E  A  M  A  M  A  L  T  L  N  F  Q  F  S  W  M  R  M  V  S  S  I  L  L  V  H  Q  I  N  F  N  Y  S  E  A  V  S  F  S  S  I  N  I  C  K  L  D  C  E  L  F  S  I  C  I  S  F  S  T  A  W  Q  V  Y  V  S  V  F  F  F  S  L  F  N  L  L  N  T  C  C  Y  I  F  I  C  S  R  R  C  F  *  L  *  S  S  V  K  L  L  *  M  G  F  E  H  C  L  L  L  S  I  L  *  T  F  *  I  T  </first_frame>
            <second_frame>  P  P  P  P  T  T  F  L  S  L  F  F  F  Q  F  S  S  F  C  S  F  L  Y  V  S  I  P  K  I  G  F  F  L  K  K  N  C  G  V  L  V  *  L  A  *  G  F  A  G  S  R  W  V  H  F  V  E  E  V  Q  V  K  K  A  I  F  T  P  L  F  K  L  L  V  L   : G  E  L  A  Q  Y  L  S  R  F  S  L  E  N  V  *  R  Q  W  Q  W  H  *  H  S  T  S  N  F  R  G  C  E  W  F  P  V  S  S  *  C  T  K  S  T  S  I  I  R  K  L  *  V  S  L  L  L  T  Y  V  N  W  I  V  S  C  S  V  F  V  Y  H  S  Q  Q  H  G  K  Y  M  Y  L  F  F  F  F  R  F  S  I  Y  *  T  L  A  A  I  S  L  F  V  H  E  D  A  S  S  C  K  A  L  *  N  Y  C  K  W  V  L  N  I  V  Y  C  Y  R  F  Y  E  L  S  E  S  L </second_frame>
            <third_frame>   P  H  P  Q  Q  H  F  C  H  Y  S  F  F  N  F  H  L  S  A  V  S  C  M  *  A  F  P  R  L  D  F  F  *  R  K  I  V  G  F  W  F  D  L  H  R  D  L  Q  D  Q  D  G  F  I  L  L  K  K  F  K  L  K  K  L  S  L  H  P  F  L  S  Y  W  F  W  :  V  N  L  L  S  I  *  V  D  F  P  W  K  M  Y  R  G  N  G  N  G  T  N  T  Q  L  P  I  F  V  D  A  N  G  F  Q  Y  P  P  S  A  P  N  Q  L  Q  L  F  G  S  C  E  F  L  F  Y  *  H  M  *  I  G  L  *  A  V  Q  Y  L  Y  I  I  L  N  S  M  A  S  I  C  I  C  F  F  F  F  A  F  Q  S  I  E  H  L  L  L  Y  L  Y  L  F  T  K  M  L  L  A  V  K  L  C  K  I  I  V  N  G  F  *  T  L  F  I  V  I  D  S  M  N  F  L  N  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75573" stop="75866"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLGKCIEAMAMALTLNFQFSWMRMVSSILLVHQINFNYSEAVSFSSINICKLDCELFSICISFSTAWQVYVSVFFFSLFNLLNTCCYIFICSRRCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73963" e_stop="74115"/>
            <exon e_start="74196" e_stop="74276"/>
            <exon e_start="75548" e_stop="75698"/>
            <exon e_start="77044" e_stop="77196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.893" e_score="0.980"/>
          <exon-intron don_prob="0.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="73963" e_stop="74115" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.893">
            <gDNA_intron_boundary i_start="74116" i_stop="74195" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74196" e_stop="74276" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="74277" i_stop="75547" i_length="1271"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75548" e_stop="75698" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.888" acc_prob="0.984">
            <gDNA_intron_boundary i_start="75699" i_stop="77043" i_length="1345"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="77044" e_stop="77196" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73963" stop="74115"/>
              <exon start="74196" stop="74276"/>
              <exon start="75548" stop="75698"/>
              <exon start="77044" stop="77196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318939" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGTCCTGCAAAATCCAGAAGGGAGAGCGTGATTCCAGCCATTTTTGCTTTTACAATCCTTCAATATCTTGTTTTGTGGGTCCCACCCCCCACCCCCAACAACATTTTTGTCACTATTCTTTTTTCAATTTTCATCTTTCTGCAGTTTCTT : GATCAAGATGGGTTCATTTTGTTGAAGAAGTTCAAGTTAAAAAAGCTATCTTTACACCCCTTTTTAAGTTATTGGTTTTGG : GTGAACTTGCTCAGTATCTGAGTAGATTTTCCTTGGAAAATGTATAGAGGCAATGGCAATGGCACTAACACTCAACTTCCAATTTTCGTGGATGCGAATGGTTTCCAGTATCCTCCTAGTGCACCAAATCAACTTCAATTATTCGGAAGCT : TGCCACTTGGATCCTCTGCTGATCCTGTAAATTATTTTGTAAATGAGCATGCTACGCCTATGATTCGGCATAATCGAGGAAGCGAAGCAGGTGTTTCCAGGCAGCAAAAGCTTCAATTTTCCTTGAATCATAATTTGGTTCATGATGACACTG</gDNA_template>
            <first_frame> K  S  P  A  K  S  R  R  E  S  V  I  P  A  I  F  A  F  T  I  L  Q  Y  L  V  L  W  V  P  P  P  T  P  N  N  I  F  V  T  I  L  F  S  I  F  I  F  L  Q  F  L  :  D  Q  D  G  F  I  L  L  K  K  F  K  L  K  K  L  S  L  H  P  F  L  S  Y  W  F  W  :  V  N  L  L  S  I  *  V  D  F  P  W  K  M  Y  R  G  N  G  N  G  T  N  T  Q  L  P  I  F  V  D  A  N  G  F  Q  Y  P  P  S  A  P  N  Q  L  Q  L  F  G  S   : L  P  L  G  S  S  A  D  P  V  N  Y  F  V  N  E  H  A  T  P  M  I  R  H  N  R  G  S  E  A  G  V  S  R  Q  Q  K  L  Q  F  S  L  N  H  N  L  V  H  D  D  T  </first_frame>
            <second_frame>  K  V  L  Q  N  P  E  G  R  A  *  F  Q  P  F  L  L  L  Q  S  F  N  I  L  F  C  G  S  H  P  P  P  P  T  T  F  L  S  L  F  F  F  Q  F  S  S  F  C  S  F  L :   I  K  M  G  S  F  C  *  R  S  S  S  *  K  S  Y  L  Y  T  P  F  *  V  I  G  F  G :   *  T  C  S  V  S  E  *  I  F  L  G  K  C  I  E  A  M  A  M  A  L  T  L  N  F  Q  F  S  W  M  R  M  V  S  S  I  L  L  V  H  Q  I  N  F  N  Y  S  E  A  :  C  H  L  D  P  L  L  I  L  *  I  I  L  *  M  S  M  L  R  L  *  F  G  I  I  E  E  A  K  Q  V  F  P  G  S  K  S  F  N  F  P  *  I  I  I  W  F  M  M  T  L </second_frame>
            <third_frame>   K  S  C  K  I  Q  K  G  E  R  D  S  S  H  F  C  F  Y  N  P  S  I  S  C  F  V  G  P  T  P  H  P  Q  Q  H  F  C  H  Y  S  F  F  N  F  H  L  S  A  V  S   : *  S  R  W  V  H  F  V  E  E  V  Q  V  K  K  A  I  F  T  P  L  F  K  L  L  V  L   : G  E  L  A  Q  Y  L  S  R  F  S  L  E  N  V  *  R  Q  W  Q  W  H  *  H  S  T  S  N  F  R  G  C  E  W  F  P  V  S  S  *  C  T  K  S  T  S  I  I  R  K  L :   A  T  W  I  L  C  *  S  C  K  L  F  C  K  *  A  C  Y  A  Y  D  S  A  *  S  R  K  R  S  R  C  F  Q  A  A  K  A  S  I  F  L  E  S  *  F  G  S  *  *  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75569" stop="75698"/>
                    <exon start="77044" stop="77195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDFPWKMYRGNGNGTNTQLPIFVDANGFQYPPSAPNQLQLFGSLPLGSSADPVNYFVNEHATPMIRHNRGSEAGVSRQQKLQFSLNHNLVHDDT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73963" stop="74115"/>
                    <exon start="74196" stop="74276"/>
                    <exon start="75548" stop="75568"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSPAKSRRESVIPAIFAFTILQYLVLWVPPPTPNNIFVTILFSIFIFLQFLDQDGFILLKKFKLKKLSLHPFLSYWFWVNLLSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="78107" PGL_stop="78706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78107" e_stop="78706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="78107" e_stop="78706" e_length="600"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78107" stop="78706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78107" stop="78630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCAGAGACATATGGCTTCGTTACTGAGTGCAGTCGAGAAGAATGTTGGCACTAAGTTGCAAGAGAAGGATATTGAGTTAGAGAACATAAATCAGAAGAACAGAGAACTAGTTGAACGGATGAAGCAAGTTACAGCTGAGGCGCAAAATTGGTGTTACAGAGCCAAGTGTAACGAATCTTTAGTCAACACTTTAAAAACGAACCTTCAGCAAGCGATGCAATCTGCTGAACAAGGAAAAGAAGGGATGGGAGACAATGAGCTAGATGATGCTGCATCCTACATTGATCGAAACAATAGGCTCAGCAATATTCCTAGTGGTTCTGGTAAGTGTGCATCGACGAAAAAAGGCATTATCTGCAAGGTATGCAAATTAAAGGAGGTATGCATCTTATTGATGCCTTGTAGACACTTGTGTTTGTGTAAAGATTGTGAAGGATTAGTTAGTGTATGTCCTATCTGCCAGTTGATGACAACTGCTAGTGTTGAAGTGTTCTTGTCTTGAAATATGAACAGAAATAAGACTAAGGCACAAGAAATAATCTCATACACATTTTAGATAATTGTTGTGGATTTAATGTACAGAAGCAACTTCTTTAACT</gDNA_template>
            <first_frame> S  R  D  I  W  L  R  Y  *  V  Q  S  R  R  M  L  A  L  S  C  K  R  R  I  L  S  *  R  T  *  I  R  R  T  E  N  *  L  N  G  *  S  K  L  Q  L  R  R  K  I  G  V  T  E  P  S  V  T  N  L  *  S  T  L  *  K  R  T  F  S  K  R  C  N  L  L  N  K  E  K  K  G  W  E  T  M  S  *  M  M  L  H  P  T  L  I  E  T  I  G  S  A  I  F  L  V  V  L  V  S  V  H  R  R  K  K  A  L  S  A  R  Y  A  N  *  R  R  Y  A  S  Y  *  C  L  V  D  T  C  V  C  V  K  I  V  K  D  *  L  V  Y  V  L  S  A  S  *  *  Q  L  L  V  L  K  C  S  C  L  E  I  *  T  E  I  R  L  R  H  K  K  *  S  H  T  H  F  R  *  L  L  W  I  *  C  T  E  A  T  S  L  T </first_frame>
            <second_frame>  A  E  T  Y  G  F  V  T  E  C  S  R  E  E  C  W  H  *  V  A  R  E  G  Y  *  V  R  E  H  K  S  E  E  Q  R  T  S  *  T  D  E  A  S  Y  S  *  G  A  K  L  V  L  Q  S  Q  V  *  R  I  F  S  Q  H  F  K  N  E  P  S  A  S  D  A  I  C  *  T  R  K  R  R  D  G  R  Q  *  A  R  *  C  C  I  L  H  *  S  K  Q  *  A  Q  Q  Y  S  *  W  F  W  *  V  C  I  D  E  K  R  H  Y  L  Q  G  M  Q  I  K  G  G  M  H  L  I  D  A  L  *  T  L  V  F  V  *  R  L  *  R  I  S  *  C  M  S  Y  L  P  V  D  D  N  C  *  C  *  S  V  L  V  L  K  Y  E  Q  K  *  D  *  G  T  R  N  N  L  I  H  I  L  D  N  C  C  G  F  N  V  Q  K  Q  L  L  *   </second_frame>
            <third_frame>   Q  R  H  M  A  S  L  L  S  A  V  E  K  N  V  G  T  K  L  Q  E  K  D  I  E  L  E  N  I  N  Q  K  N  R  E  L  V  E  R  M  K  Q  V  T  A  E  A  Q  N  W  C  Y  R  A  K  C  N  E  S  L  V  N  T  L  K  T  N  L  Q  Q  A  M  Q  S  A  E  Q  G  K  E  G  M  G  D  N  E  L  D  D  A  A  S  Y  I  D  R  N  N  R  L  S  N  I  P  S  G  S  G  K  C  A  S  T  K  K  G  I  I  C  K  V  C  K  L  K  E  V  C  I  L  L  M  P  C  R  H  L  C  L  C  K  D  C  E  G  L  V  S  V  C  P  I  C  Q  L  M  T  T  A  S  V  E  V  F  L  S  *  N  M  N  R  N  K  T  K  A  Q  E  I  I  S  Y  T  F  *  I  I  V  V  D  L  M  Y  R  S  N  F  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78109" stop="78609"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRHMASLLSAVEKNVGTKLQEKDIELENINQKNRELVERMKQVTAEAQNWCYRAKCNESLVNTLKTNLQQAMQSAEQGKEGMGDNELDDAASYIDRNNRLSNIPSGSGKCASTKKGIICKVCKLKEVCILLMPCRHLCLCKDCEGLVSVCPICQLMTTASVEVFLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="78704" PGL_stop="78217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78704" e_stop="78217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="78704" e_stop="78217" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78704" stop="78217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78704" stop="78224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAGAAGTTGCTTCTGTACATTAAATCCACAACAATTATCTAAAATGTGTATGAGATTATTTCTTGTGCCTTAGTCTTATTTCTGTTCATATTTCAAGACAAGAACACTTCAACACTAGCAGTTGTCATCAACTGGCAGATAGGACATACACTAACTAATCCTTCACAATCTTTACACAAACACAAGTGTCTACAAGGCATCAATAAGATGCATACCTCCTTTAATTTGCATACCTTGCAGATAATGCCTTTTTTCGTCGATGCACACTTACCAGAACCACTAGGAATATTGCTGAGCCTATTGTTTCGATCAATGTAGGATGCAGCATCATCTAGCTCATTGTCTCCCATCCCTTCTTTTCCTTGTTCAGCAGATTGCATCGCTTGCTGAAGGTTCGTTTTTAAAGTGTTGACTAAAGATTCGTTACACTTGGCTCTGTAACACCAATTTTGCGCCTCAGCTGTAACTTGCTTCATCCGTTCAAC</gDNA_template>
            <first_frame> L  K  K  L  L  L  Y  I  K  S  T  T  I  I  *  N  V  Y  E  I  I  S  C  A  L  V  L  F  L  F  I  F  Q  D  K  N  T  S  T  L  A  V  V  I  N  W  Q  I  G  H  T  L  T  N  P  S  Q  S  L  H  K  H  K  C  L  Q  G  I  N  K  M  H  T  S  F  N  L  H  T  L  Q  I  M  P  F  F  V  D  A  H  L  P  E  P  L  G  I  L  L  S  L  L  F  R  S  M  *  D  A  A  S  S  S  S  L  S  P  I  P  S  F  P  C  S  A  D  C  I  A  C  *  R  F  V  F  K  V  L  T  K  D  S  L  H  L  A  L  *  H  Q  F  C  A  S  A  V  T  C  F  I  R  S   </first_frame>
            <second_frame>  *  R  S  C  F  C  T  L  N  P  Q  Q  L  S  K  M  C  M  R  L  F  L  V  P  *  S  Y  F  C  S  Y  F  K  T  R  T  L  Q  H  *  Q  L  S  S  T  G  R  *  D  I  H  *  L  I  L  H  N  L  Y  T  N  T  S  V  Y  K  A  S  I  R  C  I  P  P  L  I  C  I  P  C  R  *  C  L  F  S  S  M  H  T  Y  Q  N  H  *  E  Y  C  *  A  Y  C  F  D  Q  C  R  M  Q  H  H  L  A  H  C  L  P  S  L  L  F  L  V  Q  Q  I  A  S  L  A  E  G  S  F  L  K  C  *  L  K  I  R  Y  T  W  L  C  N  T  N  F  A  P  Q  L  *  L  A  S  S  V  Q  </second_frame>
            <third_frame>   K  E  V  A  S  V  H  *  I  H  N  N  Y  L  K  C  V  *  D  Y  F  L  C  L  S  L  I  S  V  H  I  S  R  Q  E  H  F  N  T  S  S  C  H  Q  L  A  D  R  T  Y  T  N  *  S  F  T  I  F  T  Q  T  Q  V  S  T  R  H  Q  *  D  A  Y  L  L  *  F  A  Y  L  A  D  N  A  F  F  R  R  C  T  L  T  R  T  T  R  N  I  A  E  P  I  V  S  I  N  V  G  C  S  I  I  *  L  I  V  S  H  P  F  F  S  L  F  S  R  L  H  R  L  L  K  V  R  F  *  S  V  D  *  R  F  V  T  L  G  S  V  T  P  I  L  R  L  S  C  N  L  L  H  P  F  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78659" stop="78384"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVYEIISCALVLFLFIFQDKNTSTLAVVINWQIGHTLTNPSQSLHKHKCLQGINKMHTSFNLHTLQIMPFFVDAHLPEPLGILLSLLFRSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="80638" PGL_stop="84485"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80638" e_stop="80695"/>
            <exon e_start="81947" e_stop="82232"/>
            <exon e_start="83718" e_stop="83822"/>
            <exon e_start="83901" e_stop="83948"/>
            <exon e_start="84092" e_stop="84485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.736" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80638" e_stop="80695" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.736">
            <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81947" e_stop="82232" e_length="286"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.986">
            <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83718" e_stop="83822" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83901" e_stop="83948" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.843" acc_prob="0.987">
            <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84092" e_stop="84485" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80638" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80643" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80643" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80645" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80646" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80654" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80655" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80655" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80655" stop="80695"/>
              <exon start="81947" stop="82171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80658" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80662" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80664" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80666" stop="80695"/>
              <exon start="81947" stop="82128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80668" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82121" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261778" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83798" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261957" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83912" stop="83948"/>
              <exon start="84092" stop="84485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254974" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83912" stop="83948"/>
              <exon start="84092" stop="84485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255709" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTCTGGCCTTTCTCTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAG : GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG : CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG : CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG : ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGTTGATTTATAATTGAAGTG</gDNA_template>
            <first_frame> S  L  W  P  F  S  S  I  F  I  I  P  R  I  K  E  L  H  L   : G  F  L  F  V  F  C  T  R  K  W  D  R  R  G  Q  N  L  *  P  F  M  S  R  G  S  R  N  F  T  V  *  L  R  I  L  R  R  R  Q  L  A  T  *  N  I  M  L  K  R  K  D  Y  L  L  V  *  P  W  V  A  V  L  F  L  K  Q  L  E  R  V  D  F  Q  H  C  *  R  L  *  R  R  P  L  L  V  T  V  Q  I  M  D  K  S  Y  G :   F  T  L  G  *  T  V  E  Q  Q  S  L  Q  L  R  G  W  Q  L  M  K  P  H  F  V  V  Q  M  S  L  V  G  N  L  S :   E  C  L  L  F  Q  K  M  E  E  *  I  K  *  E  R :   H  V  A  L  P  S  Q  S  W  S  C  *  R  R  K  G  L  M  *  R  C  R  T  M  Q  V  V  L  C  A  I  M  C  T  I  I  L  S  D  L  Q  R  K  K  V  T  S  V  C  L  S  M  F  L  P  S  I  E  F  I  K  R  N  K  W  N  L  L  L  L  C  W  R  L  L  H  Q  L  V  E  Y  Q  Y  S  W  L  Q  M  E  F  L  V  S  K  L  Y  V  V  *  L  C  N  S  H  L  L  V  N  R  F  P  M  S  N  E  H  L  V  H  V  S  L  K  L  R  *  F  I  I  E  V </first_frame>
            <second_frame>  L  S  G  L  S  L  P  F  S  *  S  Q  G  S  K  N  F  I  *  :  D  S  Y  S  Y  F  A  R  G  N  G  I  G  G  A  K  I  C  D  H  S  C  H  G  V  Q  E  I  S  R  C  S  S  E  S  Y  G  D  G  S  *  Q  L  E  I  L  C  *  K  E  R  I  T  C  W  C  D  L  G  *  L  Y  C  S  *  N  S  W  R  G  W  T  S  N  I  V  E  G  Y  R  G  V  L  C  *  *  Q  F  K  *  W  T  S  H  M   : A  S  P  W  G  K  Q  W  S  N  K  V  C  N  *  E  A  G  S  *  *  S  H  I  S  L  C  R  *  A  W  L  A  T  S   : A  S  A  Y  C  S  R  R  W  R  N  K  S  N  K  K   : D  M  L  P  Y  R  V  N  P  G  V  V  K  E  E  R  V  *  C  D  V  V  G  R  C  R  S  F  C  V  Q  L  C  V  L  S  F  S  P  I  C  R  G  K  R  S  Q  V  S  V  C  P  C  S  Y  L  P  *  S  S  S  R  E  T  N  G  I  C  C  C  S  A  G  G  Y  C  I  N  L  L  N  I  S  T  V  G  S  K  W  N  S  *  F  Q  N  F  M  L  F  N  Y  V  I  L  I  Y  L  *  I  D  S  P  C  P  M  N  I  L  F  T  F  P  *  N  S  V  D  L  *  L  K   </second_frame>
            <third_frame>   S  L  A  F  L  F  H  F  H  N  P  K  D  Q  R  T  S  F  R :   I  P  I  R  I  L  H  E  E  M  G  S  E  G  P  K  S  V  T  I  H  V  T  G  F  K  K  F  H  G  V  A  Q  N  P  T  E  T  A  V  S  N  L  K  Y  Y  V  E  K  K  G  L  P  A  G  V  T  L  G  S  C  T  V  L  E  T  A  G  E  G  G  L  P  T  L  L  K  V  I  E  A  S  S  A  S  N  S  S  N  N  G  Q  V  I  W  :  L  H  L  G  V  N  S  G  A  T  K  F  A  I  E  R  L  A  V  N  E  A  T  F  R  C  A  D  E  L  G  W  Q  P  Q  :  R  V  P  I  V  P  E  D  G  G  I  N  Q  I  R  K  :  T  C  C  P  T  E  S  I  L  E  L  L  K  K  K  G  F  D  V  T  L  S  D  D  A  G  R  F  V  C  N  Y  V  Y  Y  H  S  L  R  F  A  E  E  K  G  H  K  C  L  F  V  H  V  P  T  F  H  R  V  H  Q  E  K  Q  M  E  F  V  A  A  L  L  E  A  I  A  S  T  C  *  I  S  V  Q  L  A  P  N  G  I  L  S  F  K  T  L  C  C  L  I  M  *  F  S  F  T  C  K  *  I  P  H  V  Q  *  T  S  C  S  R  F  L  E  T  P  L  I  Y  N  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80640" stop="80695"/>
                    <exon start="81947" stop="82232"/>
                    <exon start="83718" stop="83822"/>
                    <exon start="83901" stop="83948"/>
                    <exon start="84092" stop="84331"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLAFLFHFHNPKDQRTSFRIPIRILHEEMGSEGPKSVTIHVTGFKKFHGVAQNPTETAVSNLKYYVEKKGLPAGVTLGSCTVLETAGEGGLPTLLKVIEASSASNSSNNGQVIWLHLGVNSGATKFAIERLAVNEATFRCADELGWQPQRVPIVPEDGGINQIRKTCCPTESILELLKKKGFDVTLSDDAGRFVCNYVYYHSLRFAEEKGHKCLFVHVPTFHRVHQEKQMEFVAALLEAIASTC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="80642" e_stop="80695"/>
            <exon e_start="81947" e_stop="82232"/>
            <exon e_start="83718" e_stop="83822"/>
            <exon e_start="83901" e_stop="83994"/>
            <exon e_start="84092" e_stop="84411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.736" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80642" e_stop="80695" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.736">
            <gDNA_intron_boundary i_start="80696" i_stop="81946" i_length="1251"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81947" e_stop="82232" e_length="286"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.986">
            <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83718" e_stop="83822" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83901" e_stop="83994" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.839" acc_prob="0.987">
            <gDNA_intron_boundary i_start="83995" i_stop="84091" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84092" e_stop="84411" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80642" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83994"/>
              <exon start="84092" stop="84411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80655" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80655" stop="80695"/>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80655" stop="80695"/>
              <exon start="81947" stop="82171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80666" stop="80695"/>
              <exon start="81947" stop="82128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335431" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGGCCTTTCTCTTCCATTTTCATAATCCCAAGGATCAAAGAACTTCATTTAG : GATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG : CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG : CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAGGTCTCTTCTATGATACTGAATCTGCTCATGTATACTAGATGAAGAA : ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTG</gDNA_template>
            <first_frame> S  G  L  S  L  P  F  S  *  S  Q  G  S  K  N  F  I  *  :  D  S  Y  S  Y  F  A  R  G  N  G  I  G  G  A  K  I  C  D  H  S  C  H  G  V  Q  E  I  S  R  C  S  S  E  S  Y  G  D  G  S  *  Q  L  E  I  L  C  *  K  E  R  I  T  C  W  C  D  L  G  *  L  Y  C  S  *  N  S  W  R  G  W  T  S  N  I  V  E  G  Y  R  G  V  L  C  *  *  Q  F  K  *  W  T  S  H  M   : A  S  P  W  G  K  Q  W  S  N  K  V  C  N  *  E  A  G  S  *  *  S  H  I  S  L  C  R  *  A  W  L  A  T  S   : A  S  A  Y  C  S  R  R  W  R  N  K  S  N  K  K  G  L  F  Y  D  T  E  S  A  H  V  Y  *  M  K  K :   H  V  A  L  P  S  Q  S  W  S  C  *  R  R  K  G  L  M  *  R  C  R  T  M  Q  V  V  L  C  A  I  M  C  T  I  I  L  S  D  L  Q  R  K  K  V  T  S  V  C  L  S  M  F  L  P  S  I  E  F  I  K  R  N  K  W  N  L  L  L  L  C  W  R  L  L  H  Q  L  V  E  Y  Q  Y  S  W  L  Q  M  E  F  L  V  S  K  L  Y  V  V  *  L  C  N  S  H  L  L  </first_frame>
            <second_frame>  L  A  F  L  F  H  F  H  N  P  K  D  Q  R  T  S  F  R :   I  P  I  R  I  L  H  E  E  M  G  S  E  G  P  K  S  V  T  I  H  V  T  G  F  K  K  F  H  G  V  A  Q  N  P  T  E  T  A  V  S  N  L  K  Y  Y  V  E  K  K  G  L  P  A  G  V  T  L  G  S  C  T  V  L  E  T  A  G  E  G  G  L  P  T  L  L  K  V  I  E  A  S  S  A  S  N  S  S  N  N  G  Q  V  I  W  :  L  H  L  G  V  N  S  G  A  T  K  F  A  I  E  R  L  A  V  N  E  A  T  F  R  C  A  D  E  L  G  W  Q  P  Q  :  R  V  P  I  V  P  E  D  G  G  I  N  Q  I  R  K  V  S  S  M  I  L  N  L  L  M  Y  T  R  *  R   : N  M  L  P  Y  R  V  N  P  G  V  V  K  E  E  R  V  *  C  D  V  V  G  R  C  R  S  F  C  V  Q  L  C  V  L  S  F  S  P  I  C  R  G  K  R  S  Q  V  S  V  C  P  C  S  Y  L  P  *  S  S  S  R  E  T  N  G  I  C  C  C  S  A  G  G  Y  C  I  N  L  L  N  I  S  T  V  G  S  K  W  N  S  *  F  Q  N  F  M  L  F  N  Y  V  I  L  I  Y  L </second_frame>
            <third_frame>   W  P  F  S  S  I  F  I  I  P  R  I  K  E  L  H  L   : G  F  L  F  V  F  C  T  R  K  W  D  R  R  G  Q  N  L  *  P  F  M  S  R  G  S  R  N  F  T  V  *  L  R  I  L  R  R  R  Q  L  A  T  *  N  I  M  L  K  R  K  D  Y  L  L  V  *  P  W  V  A  V  L  F  L  K  Q  L  E  R  V  D  F  Q  H  C  *  R  L  *  R  R  P  L  L  V  T  V  Q  I  M  D  K  S  Y  G :   F  T  L  G  *  T  V  E  Q  Q  S  L  Q  L  R  G  W  Q  L  M  K  P  H  F  V  V  Q  M  S  L  V  G  N  L  S :   E  C  L  L  F  Q  K  M  E  E  *  I  K  *  E  R  S  L  L  *  Y  *  I  C  S  C  I  L  D  E  E  :  T  C  C  P  T  E  S  I  L  E  L  L  K  K  K  G  F  D  V  T  L  S  D  D  A  G  R  F  V  C  N  Y  V  Y  Y  H  S  L  R  F  A  E  E  K  G  H  K  C  L  F  V  H  V  P  T  F  H  R  V  H  Q  E  K  Q  M  E  F  V  A  A  L  L  E  A  I  A  S  T  C  *  I  S  V  Q  L  A  P  N  G  I  L  S  F  K  T  L  C  C  L  I  M  *  F  S  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80643" stop="80695"/>
                    <exon start="81947" stop="82232"/>
                    <exon start="83718" stop="83822"/>
                    <exon start="83901" stop="83990"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAFLFHFHNPKDQRTSFRIPIRILHEEMGSEGPKSVTIHVTGFKKFHGVAQNPTETAVSNLKYYVEKKGLPAGVTLGSCTVLETAGEGGLPTLLKVIEASSASNSSNNGQVIWLHLGVNSGATKFAIERLAVNEATFRCADELGWQPQRVPIVPEDGGINQIRKVSSMILNLLMYTR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83968" stop="83994"/>
                    <exon start="84092" stop="84331"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICSCILDEETCCPTESILELLKKKGFDVTLSDDAGRFVCNYVYYHSLRFAEEKGHKCLFVHVPTFHRVHQEKQMEFVAALLEAIASTC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="81941" e_stop="82232"/>
            <exon e_start="83718" e_stop="83822"/>
            <exon e_start="83901" e_stop="83948"/>
            <exon e_start="84092" e_stop="84485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.986" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="81941" e_stop="82232" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.986">
            <gDNA_intron_boundary i_start="82233" i_stop="83717" i_length="1485"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83718" e_stop="83822" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83823" i_stop="83900" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83901" e_stop="83948" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.843" acc_prob="0.987">
            <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84092" e_stop="84485" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81941" stop="82128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81947" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82121" stop="82232"/>
              <exon start="83718" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261778" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83798" stop="83822"/>
              <exon start="83901" stop="83948"/>
              <exon start="84092" stop="84485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261957" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83912" stop="83948"/>
              <exon start="84092" stop="84485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254974" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83912" stop="83948"/>
              <exon start="84092" stop="84485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255709" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTAGGATTCCTATTCGTATTTTGCACGAGGAAATGGGATCGGAGGGGCCAAAATCTGTGACCATTCATGTCACGGGGTTCAAGAAATTTCACGGTGTAGCTCAGAATCCTACGGAGACGGCAGTTAGCAACTTGAAATATTATGTTGAAAAGAAAGGATTACCTGCTGGTGTGACCTTGGGTAGCTGTACTGTTCTTGAAACAGCTGGAGAGGGTGGACTTCCAACATTGTTGAAGGTTATAGAGGCGTCCTCTGCTAGTAACAGTTCAAATAATGGACAAGTCATATGG : CTTCACCTTGGGGTAAACAGTGGAGCAACAAAGTTTGCAATTGAGAGGCTGGCAGTTAATGAAGCCACATTTCGTTGTGCAGATGAGCTTGGTTGGCAACCTCAG : CGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG : ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGTTGATTTATAATTGAAGTG</gDNA_template>
            <first_frame> Y  *  D  S  Y  S  Y  F  A  R  G  N  G  I  G  G  A  K  I  C  D  H  S  C  H  G  V  Q  E  I  S  R  C  S  S  E  S  Y  G  D  G  S  *  Q  L  E  I  L  C  *  K  E  R  I  T  C  W  C  D  L  G  *  L  Y  C  S  *  N  S  W  R  G  W  T  S  N  I  V  E  G  Y  R  G  V  L  C  *  *  Q  F  K  *  W  T  S  H  M   : A  S  P  W  G  K  Q  W  S  N  K  V  C  N  *  E  A  G  S  *  *  S  H  I  S  L  C  R  *  A  W  L  A  T  S   : A  S  A  Y  C  S  R  R  W  R  N  K  S  N  K  K   : D  M  L  P  Y  R  V  N  P  G  V  V  K  E  E  R  V  *  C  D  V  V  G  R  C  R  S  F  C  V  Q  L  C  V  L  S  F  S  P  I  C  R  G  K  R  S  Q  V  S  V  C  P  C  S  Y  L  P  *  S  S  S  R  E  T  N  G  I  C  C  C  S  A  G  G  Y  C  I  N  L  L  N  I  S  T  V  G  S  K  W  N  S  *  F  Q  N  F  M  L  F  N  Y  V  I  L  I  Y  L  *  I  D  S  P  C  P  M  N  I  L  F  T  F  P  *  N  S  V  D  L  *  L  K   </first_frame>
            <second_frame>  I  R  I  P  I  R  I  L  H  E  E  M  G  S  E  G  P  K  S  V  T  I  H  V  T  G  F  K  K  F  H  G  V  A  Q  N  P  T  E  T  A  V  S  N  L  K  Y  Y  V  E  K  K  G  L  P  A  G  V  T  L  G  S  C  T  V  L  E  T  A  G  E  G  G  L  P  T  L  L  K  V  I  E  A  S  S  A  S  N  S  S  N  N  G  Q  V  I  W  :  L  H  L  G  V  N  S  G  A  T  K  F  A  I  E  R  L  A  V  N  E  A  T  F  R  C  A  D  E  L  G  W  Q  P  Q  :  R  V  P  I  V  P  E  D  G  G  I  N  Q  I  R  K  :  T  C  C  P  T  E  S  I  L  E  L  L  K  K  K  G  F  D  V  T  L  S  D  D  A  G  R  F  V  C  N  Y  V  Y  Y  H  S  L  R  F  A  E  E  K  G  H  K  C  L  F  V  H  V  P  T  F  H  R  V  H  Q  E  K  Q  M  E  F  V  A  A  L  L  E  A  I  A  S  T  C  *  I  S  V  Q  L  A  P  N  G  I  L  S  F  K  T  L  C  C  L  I  M  *  F  S  F  T  C  K  *  I  P  H  V  Q  *  T  S  C  S  R  F  L  E  T  P  L  I  Y  N  *  S  </second_frame>
            <third_frame>   L  G  F  L  F  V  F  C  T  R  K  W  D  R  R  G  Q  N  L  *  P  F  M  S  R  G  S  R  N  F  T  V  *  L  R  I  L  R  R  R  Q  L  A  T  *  N  I  M  L  K  R  K  D  Y  L  L  V  *  P  W  V  A  V  L  F  L  K  Q  L  E  R  V  D  F  Q  H  C  *  R  L  *  R  R  P  L  L  V  T  V  Q  I  M  D  K  S  Y  G :   F  T  L  G  *  T  V  E  Q  Q  S  L  Q  L  R  G  W  Q  L  M  K  P  H  F  V  V  Q  M  S  L  V  G  N  L  S :   E  C  L  L  F  Q  K  M  E  E  *  I  K  *  E  R :   H  V  A  L  P  S  Q  S  W  S  C  *  R  R  K  G  L  M  *  R  C  R  T  M  Q  V  V  L  C  A  I  M  C  T  I  I  L  S  D  L  Q  R  K  K  V  T  S  V  C  L  S  M  F  L  P  S  I  E  F  I  K  R  N  K  W  N  L  L  L  L  C  W  R  L  L  H  Q  L  V  E  Y  Q  Y  S  W  L  Q  M  E  F  L  V  S  K  L  Y  V  V  *  L  C  N  S  H  L  L  V  N  R  F  P  M  S  N  E  H  L  V  H  V  S  L  K  L  R  *  F  I  I  E  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81942" stop="82232"/>
                    <exon start="83718" stop="83822"/>
                    <exon start="83901" stop="83948"/>
                    <exon start="84092" stop="84331"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRIPIRILHEEMGSEGPKSVTIHVTGFKKFHGVAQNPTETAVSNLKYYVEKKGLPAGVTLGSCTVLETAGEGGLPTLLKVIEASSASNSSNNGQVIWLHLGVNSGATKFAIERLAVNEATFRCADELGWQPQRVPIVPEDGGINQIRKTCCPTESILELLKKKGFDVTLSDDAGRFVCNYVYYHSLRFAEEKGHKCLFVHVPTFHRVHQEKQMEFVAALLEAIASTC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="83899" e_stop="83948"/>
            <exon e_start="84092" e_stop="84485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.843" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83899" e_stop="83948" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.843" acc_prob="0.987">
            <gDNA_intron_boundary i_start="83949" i_stop="84091" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="84092" e_stop="84485" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83899" stop="83948"/>
              <exon start="84092" stop="84462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83912" stop="83948"/>
              <exon start="84092" stop="84485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254974" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83912" stop="83948"/>
              <exon start="84092" stop="84485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255709" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCGAGTGCCTATTGTTCCAGAAGATGGAGGAATAAATCAAATAAGAAAG : ACATGTTGCCCTACCGAGTCAATCCTGGAGTTGTTAAAGAAGAAAGGGTTTGATGTGACGTTGTCGGACGATGCAGGTCGTTTTGTGTGCAATTATGTGTACTATCATTCTCTCCGATTTGCAGAGGAAAAAGGTCACAAGTGTCTGTTTGTCCATGTTCCTACCTTCCATAGAGTTCATCAAGAGAAACAAATGGAATTTGTTGCTGCTCTGCTGGAGGCTATTGCATCAACTTGTTGAATATCAGTACAGTTGGCTCCAAATGGAATTCTTAGTTTCAAAACTTTATGTTGTTTAATTATGTAATTCTCATTTACTTGTAAATAGATTCCCCATGTCCAATGAACATCTTGTTCACGTTTCCTTGAAACTCCGTTGATTTATAATTGAAGTG</gDNA_template>
            <first_frame> S  E  C  L  L  F  Q  K  M  E  E  *  I  K  *  E  R :   H  V  A  L  P  S  Q  S  W  S  C  *  R  R  K  G  L  M  *  R  C  R  T  M  Q  V  V  L  C  A  I  M  C  T  I  I  L  S  D  L  Q  R  K  K  V  T  S  V  C  L  S  M  F  L  P  S  I  E  F  I  K  R  N  K  W  N  L  L  L  L  C  W  R  L  L  H  Q  L  V  E  Y  Q  Y  S  W  L  Q  M  E  F  L  V  S  K  L  Y  V  V  *  L  C  N  S  H  L  L  V  N  R  F  P  M  S  N  E  H  L  V  H  V  S  L  K  L  R  *  F  I  I  E  V </first_frame>
            <second_frame>  A  S  A  Y  C  S  R  R  W  R  N  K  S  N  K  K   : D  M  L  P  Y  R  V  N  P  G  V  V  K  E  E  R  V  *  C  D  V  V  G  R  C  R  S  F  C  V  Q  L  C  V  L  S  F  S  P  I  C  R  G  K  R  S  Q  V  S  V  C  P  C  S  Y  L  P  *  S  S  S  R  E  T  N  G  I  C  C  C  S  A  G  G  Y  C  I  N  L  L  N  I  S  T  V  G  S  K  W  N  S  *  F  Q  N  F  M  L  F  N  Y  V  I  L  I  Y  L  *  I  D  S  P  C  P  M  N  I  L  F  T  F  P  *  N  S  V  D  L  *  L  K   </second_frame>
            <third_frame>   R  V  P  I  V  P  E  D  G  G  I  N  Q  I  R  K  :  T  C  C  P  T  E  S  I  L  E  L  L  K  K  K  G  F  D  V  T  L  S  D  D  A  G  R  F  V  C  N  Y  V  Y  Y  H  S  L  R  F  A  E  E  K  G  H  K  C  L  F  V  H  V  P  T  F  H  R  V  H  Q  E  K  Q  M  E  F  V  A  A  L  L  E  A  I  A  S  T  C  *  I  S  V  Q  L  A  P  N  G  I  L  S  F  K  T  L  C  C  L  I  M  *  F  S  F  T  C  K  *  I  P  H  V  Q  *  T  S  C  S  R  F  L  E  T  P  L  I  Y  N  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83901" stop="83948"/>
                    <exon start="84092" stop="84331"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVPIVPEDGGINQIRKTCCPTESILELLKKKGFDVTLSDDAGRFVCNYVYYHSLRFAEEKGHKCLFVHVPTFHRVHQEKQMEFVAALLEAIASTC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84150" stop="84389"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RCRTMQVVLCAIMCTIILSDLQRKKVTSVCLSMFLPSIEFIKRNKWNLLLLCWRLLHQLVEYQYSWLQMEFLVSKLYVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="88469" PGL_stop="85173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88469" e_stop="88405"/>
            <exon e_start="87637" e_stop="87468"/>
            <exon e_start="86647" e_stop="86577"/>
            <exon e_start="86418" e_stop="86299"/>
            <exon e_start="85741" e_stop="85623"/>
            <exon e_start="85544" e_stop="85463"/>
            <exon e_start="85390" e_stop="85173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.477" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.281" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88469" e_stop="88405" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87637" e_stop="87468" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.477" acc_prob="0.975">
            <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86647" e_stop="86577" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.987">
            <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86418" e_stop="86299" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.997">
            <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85741" e_stop="85623" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.281" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85622" i_stop="85545" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85544" e_stop="85463" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.986">
            <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85390" e_stop="85173" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88469" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88465" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88464" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88462" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88452" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88452" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88452" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88452" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88452" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88451" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88451" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88450" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88450" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88450" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88449" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88449" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88449" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88449" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88449" stop="88405"/>
              <exon start="87637" stop="87524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88448" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88447" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88447" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88447" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88446" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88445" stop="88405"/>
              <exon start="87637" stop="87468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88442" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88442" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88439" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88439" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88436" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88435" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88434" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88428" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88427" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88426" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87625" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87624" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87620" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87619" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87604" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87604" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87604" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87604" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87592" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87591" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87584" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87574" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87568" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87564" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87540" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87511" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86639" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86630" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596014" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86623" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86617" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86615" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86591" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86374" stop="86299"/>
              <exon start="85741" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291028" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85731" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620617" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85729" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288033" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85726" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85725" stop="85623"/>
              <exon start="85544" stop="85463"/>
              <exon start="85390" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATATTTCAGCGTTAATCTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG : GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG : GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG : ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG : GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG : GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG : GCTTAAAGTGATGCAGATTTGTTATTGTGGGTTGATCCTGGATGCAGGCGGAGTTTTATCTAGTTTTTTTTACTTCTCATGTCAGTGTGGTTATGAATATCATGTTGAAAGCATTTTGTGTTTCCTTAGGGCTTTTTGTAATGGCTGTGTAATACAATGGTCGAATATATGTAATTGCTGTTTGATTAGGTATATCATCATTATCATATATTATTATT</gDNA_template>
            <first_frame> H  I  S  A  L  I  S  G  F  S  L  N  R  S  L  I  L  K  A  L  F  R :   D  H  H  Q  G  S  V  M  G  L  T  F  T  K  L  F  S  R  L  F  A  K  K  E  M  R  I  L  M  V  G  L  D  A  A  G  K  T  T  I  L  Y  K  L  K  L  G  E  I  V  T  T  I  P  T  I   : G  F  N  V  E  T  V  E  Y  K  N  I  S  F  T  V  W  D  V  G  G  Q  D  K  :  I  R  P  L  W  R  H  Y  F  Q  N  T  Q  G  L  I  F  V  V  D  S  N  D  R  D  R  V  V  E  A  R  D  E  L  H  R  M  L  N  E  :  D  E  L  R  D  A  V  L  L  V  F  A  N  K  Q  D  L  P  N  A  M  N  A  A  E  I  T  D  K  L  G  L  H  S  L  R  Q  R  H  W :   Y  I  Q  S  T  C  A  T  S  G  E  G  L  Y  E  G  L  D  W  L  S  N  N  I  A  N  K  :  A  *  S  D  A  D  L  L  L  W  V  D  P  G  C  R  R  S  F  I  *  F  F  L  L  L  M  S  V  W  L  *  I  S  C  *  K  H  F  V  F  P  *  G  F  L  *  W  L  C  N  T  M  V  E  Y  M  *  L  L  F  D  *  V  Y  H  H  Y  H  I  L  L   </first_frame>
            <second_frame>  I  F  Q  R  *  S  Q  V  S  L  S  I  D  P  S  F  *  K  L  F  S   : G  I  I  I  K  E  A  *  W  G  S  H  S  P  S  S  S  V  G  F  S  P  R  R  K  C  A  F  *  W  L  V  L  M  Q  L  V  R  P  P  Y  C  T  S  *  S  W  E  R  S  *  L  L  F  L  P  L  :  V  S  M  W  R  L  L  S  T  R  T  S  A  S  L  F  G  M  S  E  V  R  T  R :   S  V  H  C  G  G  T  T  S  R  T  L  R  V  S  F  L  W  L  I  A  M  I  E  T  V  L  *  K  Q  E  M  N  C  I  G  C  *  T  R :   M  N  F  G  M  L  C  F  *  Y  L  L  T  N  K  I  F  L  T  Q  *  M  L  L  K  *  L  I  S  L  D  C  T  P  S  G  S  V  T   : G  T  S  R  A  L  V  Q  L  L  A  R  G  F  M  R  D  L  I  G  F  L  T  T  L  L  T  R :   L  K  V  M  Q  I  C  Y  C  G  L  I  L  D  A  G  G  V  L  S  S  F  F  Y  F  S  C  Q  C  G  Y  E  Y  H  V  E  S  I  L  C  F  L  R  A  F  C  N  G  C  V  I  Q  W  S  N  I  C  N  C  C  L  I  R  Y  I  I  I  I  I  Y  Y  Y  </second_frame>
            <third_frame>   Y  F  S  V  N  L  R  F  L  S  Q  *  I  P  H  S  K  S  S  F  Q  :  G  S  S  S  R  K  R  D  G  A  H  I  H  Q  A  L  Q  S  A  F  R  Q  E  G  N  A  H  S  N  G  W  S  *  C  S  W  *  D  H  H  I  V  Q  V  E  A  G  R  D  R  D  Y  Y  S  Y  H  W :   F  Q  C  G  D  C  *  V  Q  E  H  Q  L  H  C  L  G  C  R  R  S  G  Q   : D  P  S  I  V  E  A  L  L  P  E  H  S  G  S  H  F  C  G  *  *  Q  *  *  R  P  C  C  R  S  K  R  *  I  A  *  D  V  E  R   : G  *  T  S  G  C  C  A  S  S  I  C  *  Q  T  R  S  S  *  R  N  E  C  C  *  N  N  *  *  A  W  T  A  L  P  Q  A  A  S  L  :  V  H  P  E  H  L  C  N  F  W  R  G  A  L  *  G  T  *  L  A  F  *  Q  H  C  *  Q   : G  L  K  *  C  R  F  V  I  V  G  *  S  W  M  Q  A  E  F  Y  L  V  F  F  T  S  H  V  S  V  V  M  N  I  M  L  K  A  F  C  V  S  L  G  L  F  V  M  A  V  *  Y  N  G  R  I  Y  V  I  A  V  *  L  G  I  S  S  L  S  Y  I  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88469" stop="88405"/>
                    <exon start="87637" stop="87468"/>
                    <exon start="86647" stop="86577"/>
                    <exon start="86418" stop="86299"/>
                    <exon start="85741" stop="85623"/>
                    <exon start="85544" stop="85463"/>
                    <exon start="85390" stop="85385"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HISALISGFSLNRSLILKALFRDHHQGSVMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88464" e_stop="88405"/>
            <exon e_start="87637" e_stop="87468"/>
            <exon e_start="86647" e_stop="86577"/>
            <exon e_start="86418" e_stop="86299"/>
            <exon e_start="85741" e_stop="85463"/>
            <exon e_start="85390" e_stop="85377"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.477" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.986" e_score="0.993"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88464" e_stop="88405" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88404" i_stop="87638" i_length="767"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87637" e_stop="87468" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.477" acc_prob="0.975">
            <gDNA_intron_boundary i_start="87467" i_stop="86648" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86647" e_stop="86577" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.987">
            <gDNA_intron_boundary i_start="86576" i_stop="86419" i_length="158"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86418" e_stop="86299" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.997">
            <gDNA_intron_boundary i_start="86298" i_stop="85742" i_length="557"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="85741" e_stop="85463" e_length="279"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.986">
            <gDNA_intron_boundary i_start="85462" i_stop="85391" i_length="72"/>
          </intron>
          <exon e_serial="6" e_score="0.857">
            <gDNA_exon_boundary e_start="85390" e_stop="85377" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88464" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88452" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88452" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88451" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88451" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88450" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88449" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85463"/>
              <exon start="85390" stop="85377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88449" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88449" stop="88405"/>
              <exon start="87637" stop="87524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88445" stop="88405"/>
              <exon start="87637" stop="87468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88442" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88442" stop="88405"/>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87637" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87620" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87592" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87584" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87574" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87568" stop="87468"/>
              <exon start="86647" stop="86577"/>
              <exon start="86418" stop="86299"/>
              <exon start="85741" stop="85639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204728" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGCGTTAATCTCAGGTTTCTCTCTCAATAGATCCCTCATTCTAAAAGCTCTTTTCAG : GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG : GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG : ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG : GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTGGTAGGCACTTTGCTAGTGCTTGTGAGAATGATTTGCTTACTTTTGAGGAGTTTCTAAGTTGGTTTTTTTCTGTATCAGGTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG : GCTTAAAGTGATGC</gDNA_template>
            <first_frame> F  S  V  N  L  R  F  L  S  Q  *  I  P  H  S  K  S  S  F  Q  :  G  S  S  S  R  K  R  D  G  A  H  I  H  Q  A  L  Q  S  A  F  R  Q  E  G  N  A  H  S  N  G  W  S  *  C  S  W  *  D  H  H  I  V  Q  V  E  A  G  R  D  R  D  Y  Y  S  Y  H  W :   F  Q  C  G  D  C  *  V  Q  E  H  Q  L  H  C  L  G  C  R  R  S  G  Q   : D  P  S  I  V  E  A  L  L  P  E  H  S  G  S  H  F  C  G  *  *  Q  *  *  R  P  C  C  R  S  K  R  *  I  A  *  D  V  E  R   : G  *  T  S  G  C  C  A  S  S  I  C  *  Q  T  R  S  S  *  R  N  E  C  C  *  N  N  *  *  A  W  T  A  L  P  Q  A  A  S  L  V  G  T  L  L  V  L  V  R  M  I  C  L  L  L  R  S  F  *  V  G  F  F  L  Y  Q  V  H  P  E  H  L  C  N  F  W  R  G  A  L  *  G  T  *  L  A  F  *  Q  H  C  *  Q   : G  L  K  *  C </first_frame>
            <second_frame>  S  A  L  I  S  G  F  S  L  N  R  S  L  I  L  K  A  L  F  R :   D  H  H  Q  G  S  V  M  G  L  T  F  T  K  L  F  S  R  L  F  A  K  K  E  M  R  I  L  M  V  G  L  D  A  A  G  K  T  T  I  L  Y  K  L  K  L  G  E  I  V  T  T  I  P  T  I   : G  F  N  V  E  T  V  E  Y  K  N  I  S  F  T  V  W  D  V  G  G  Q  D  K  :  I  R  P  L  W  R  H  Y  F  Q  N  T  Q  G  L  I  F  V  V  D  S  N  D  R  D  R  V  V  E  A  R  D  E  L  H  R  M  L  N  E  :  D  E  L  R  D  A  V  L  L  V  F  A  N  K  Q  D  L  P  N  A  M  N  A  A  E  I  T  D  K  L  G  L  H  S  L  R  Q  R  H  W  *  A  L  C  *  C  L  *  E  *  F  A  Y  F  *  G  V  S  K  L  V  F  F  C  I  R  Y  I  Q  S  T  C  A  T  S  G  E  G  L  Y  E  G  L  D  W  L  S  N  N  I  A  N  K  :  A  *  S  D   </second_frame>
            <third_frame>   Q  R  *  S  Q  V  S  L  S  I  D  P  S  F  *  K  L  F  S   : G  I  I  I  K  E  A  *  W  G  S  H  S  P  S  S  S  V  G  F  S  P  R  R  K  C  A  F  *  W  L  V  L  M  Q  L  V  R  P  P  Y  C  T  S  *  S  W  E  R  S  *  L  L  F  L  P  L  :  V  S  M  W  R  L  L  S  T  R  T  S  A  S  L  F  G  M  S  E  V  R  T  R :   S  V  H  C  G  G  T  T  S  R  T  L  R  V  S  F  L  W  L  I  A  M  I  E  T  V  L  *  K  Q  E  M  N  C  I  G  C  *  T  R :   M  N  F  G  M  L  C  F  *  Y  L  L  T  N  K  I  F  L  T  Q  *  M  L  L  K  *  L  I  S  L  D  C  T  P  S  G  S  V  T  G  R  H  F  A  S  A  C  E  N  D  L  L  T  F  E  E  F  L  S  W  F  F  S  V  S  G  T  S  R  A  L  V  Q  L  L  A  R  G  F  M  R  D  L  I  G  F  L  T  T  L  L  T  R :   L  K  V  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88463" stop="88405"/>
                    <exon start="87637" stop="87468"/>
                    <exon start="86647" stop="86577"/>
                    <exon start="86418" stop="86299"/>
                    <exon start="85741" stop="85619"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SALISGFSLNRSLILKALFRDHHQGSVMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="93164" PGL_stop="89982"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93164" e_stop="92694"/>
            <exon e_start="91894" e_stop="91772"/>
            <exon e_start="91350" e_stop="91249"/>
            <exon e_start="91084" e_stop="91046"/>
            <exon e_start="90941" e_stop="90843"/>
            <exon e_start="90533" e_stop="90486"/>
            <exon e_start="90306" e_stop="90211"/>
            <exon e_start="90010" e_stop="89982"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.909"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.998" e_score="0.906"/>
          <exon-only e_score="0.828"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="93164" e_stop="92694" e_length="471"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="92693" i_stop="91895" i_length="799"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91894" e_stop="91772" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="91771" i_stop="91351" i_length="421"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91350" e_stop="91249" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.988">
            <gDNA_intron_boundary i_start="91248" i_stop="91085" i_length="164"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91084" e_stop="91046" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.878">
            <gDNA_intron_boundary i_start="91045" i_stop="90942" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90941" e_stop="90843" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.990">
            <gDNA_intron_boundary i_start="90842" i_stop="90534" i_length="309"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90533" e_stop="90486" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.973">
            <gDNA_intron_boundary i_start="90485" i_stop="90307" i_length="179"/>
          </intron>
          <exon e_serial="7" e_score="0.906">
            <gDNA_exon_boundary e_start="90306" e_stop="90211" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.937" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90210" i_stop="90011" i_length="200"/>
          </intron>
          <exon e_serial="8" e_score="0.828">
            <gDNA_exon_boundary e_start="90010" e_stop="89982" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93164" stop="92694"/>
              <exon start="91894" stop="91859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93011" stop="92694"/>
              <exon start="91894" stop="91772"/>
              <exon start="91350" stop="91252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93011" stop="92694"/>
              <exon start="91894" stop="91772"/>
              <exon start="91350" stop="91252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93010" stop="92694"/>
              <exon start="91894" stop="91772"/>
              <exon start="91350" stop="91274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92987" stop="92694"/>
              <exon start="91894" stop="91808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92969" stop="92694"/>
              <exon start="91894" stop="91772"/>
              <exon start="91350" stop="91249"/>
              <exon start="91084" stop="91046"/>
              <exon start="90941" stop="90843"/>
              <exon start="90533" stop="90486"/>
              <exon start="90306" stop="90211"/>
              <exon start="90010" stop="89982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92932" stop="92694"/>
              <exon start="91894" stop="91772"/>
              <exon start="91350" stop="91249"/>
              <exon start="91084" stop="91046"/>
              <exon start="90941" stop="90843"/>
              <exon start="90533" stop="90486"/>
              <exon start="90306" stop="90249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATACACATATGATTTCTAGCATCTTTTTGGCTCCATAAGTCCCAATGTCAAAACCTCATAATATGGCATCCATCTTATCTCATCTTATCCAAATAAATCAAAAACACACACATCAAGATATCACATATTATTGTCACTCCATAACACAAACACAAAATTACTCTCTTTGAAAAATAACAACATTTTTTCAAATTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAG : ATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGGAAG : GGTACAAAGGCGTTTTGTAGTGGTGGTGATCAGGCATTGAGAAGTAAGGATGGTTATGCTGATTTTGAAAGTTTTGGTCGCCTTAATGTTTTAGATTTACAG : GTGCAAATTCGTCGTCTACCAAAACCAGTAATTGCAATG : GTTGCAGGTTACGCTGTTGGTGGAGGACACATTTTACATATGGTTTGCGATCTAACGATTGCAGCAGACAATGCTATATTTGGTCAGACTGGCCCAAAG : GTAGGAAGTTTCGATGCTGGTTATGGAAGTTCAATTATGTCCCGTCTG : GTTGGACCAAAGAAAGCTCGTGAAATGTGGTTTTTAACAAGGTTCTACACAGCTTCTGAAGCAGAGAAAATGGGACTTGTGAATACTGTTGTTCCA : GTAGATAAGTTGGAAGCAGAAACAATAAA</gDNA_template>
            <first_frame> *  I  H  I  *  F  L  A  S  F  W  L  H  K  S  Q  C  Q  N  L  I  I  W  H  P  S  Y  L  I  L  S  K  *  I  K  N  T  H  I  K  I  S  H  I  I  V  T  P  *  H  K  H  K  I  T  L  F  E  K  *  Q  H  F  F  K  L  P  R  M  I  E  E  D  L  N  T  M  R  R  R  V  A  S  V  A  N  H  L  L  P  I  P  L  A  Q  N  V  F  S  S  I  G  F  S  N  C  S  S  S  S  M  N  D  N  Y  H  K  I  H  G  E  V  P  N  H  E  P  V  W  R  L  I  P  S  D  D  E  S  G  K  D  F  T  D  I  I  Y  E  K  A  V  G  E  P  I  A  K  :  I  T  I  N  R  P  D  R  R  N  A  F  R  P  H  T  I  K  E  L  I  R  A  F  N  D  A  R  D  D  G  S  V  G  V  I  I  L  T  G  K  :  G  T  K  A  F  C  S  G  G  D  Q  A  L  R  S  K  D  G  Y  A  D  F  E  S  F  G  R  L  N  V  L  D  L  Q  :  V  Q  I  R  R  L  P  K  P  V  I  A  M  :  V  A  G  Y  A  V  G  G  G  H  I  L  H  M  V  C  D  L  T  I  A  A  D  N  A  I  F  G  Q  T  G  P  K  :  V  G  S  F  D  A  G  Y  G  S  S  I  M  S  R  L  :  V  G  P  K  K  A  R  E  M  W  F  L  T  R  F  Y  T  A  S  E  A  E  K  M  G  L  V  N  T  V  V  P  :  V  D  K  L  E  A  E  T  I   </first_frame>
            <second_frame>  K  Y  T  Y  D  F  *  H  L  F  G  S  I  S  P  N  V  K  T  S  *  Y  G  I  H  L  I  S  S  Y  P  N  K  S  K  T  H  T  S  R  Y  H  I  L  L  S  L  H  N  T  N  T  K  L  L  S  L  K  N  N  N  I  F  S  N  Y  Q  E  *  *  R  R  I  L  T  L  *  G  E  E  W  H  Q  L  Q  I  I  Y  C  Q  S  L  *  L  K  M  F  F  L  Q  L  A  F  P  I  V  A  L  L  L  *  M  I  I  T  I  K  F  M  V  K  S  Q  I  M  N  L  F  G  D  L  F  L  L  M  M  N  L  A  R  T  S  L  I  S  Y  M  R  K  L  L  V  N  P  L  L  R :   *  P  S  I  D  R  I  E  E  M  L  S  D  L  T  P  S  R  S  L  S  A  H  L  M  M  P  G  M  M  V  Q  W  E  S  S  S  S  Q  G  R :   V  Q  R  R  F  V  V  V  V  I  R  H  *  E  V  R  M  V  M  L  I  L  K  V  L  V  A  L  M  F  *  I  Y  R :   C  K  F  V  V  Y  Q  N  Q  *  L  Q  W :   L  Q  V  T  L  L  V  E  D  T  F  Y  I  W  F  A  I  *  R  L  Q  Q  T  M  L  Y  L  V  R  L  A  Q  R :   *  E  V  S  M  L  V  M  E  V  Q  L  C  P  V  W :   L  D  Q  R  K  L  V  K  C  G  F  *  Q  G  S  T  Q  L  L  K  Q  R  K  W  D  L  *  I  L  L  F  Q :   *  I  S  W  K  Q  K  Q  *  </second_frame>
            <third_frame>   N  T  H  M  I  S  S  I  F  L  A  P  *  V  P  M  S  K  P  H  N  M  A  S  I  L  S  H  L  I  Q  I  N  Q  K  H  T  H  Q  D  I  T  Y  Y  C  H  S  I  T  Q  T  Q  N  Y  S  L  *  K  I  T  T  F  F  Q  I  T  K  N  D  R  G  G  S  *  H  Y  E  E  K  S  G  I  S  C  K  S  F  I  A  N  P  F  S  S  K  C  F  F  F  N  W  L  F  Q  L  *  L  F  F  Y  E  *  *  L  P  *  N  S  W  *  S  P  K  S  *  T  C  L  E  T  Y  S  F  *  *  *  I  W  Q  G  L  H  *  Y  H  I  *  E  S  C  W  *  T  H  C  *   : D  N  H  Q  *  T  G  *  K  K  C  F  P  T  S  H  H  Q  G  A  Y  P  R  I  *  *  C  Q  G  *  W  F  S  G  S  H  H  P  H  R  E   : G  Y  K  G  V  L  *  W  W  *  S  G  I  E  K  *  G  W  L  C  *  F  *  K  F  W  S  P  *  C  F  R  F  T   : G  A  N  S  S  S  T  K  T  S  N  C  N   : G  C  R  L  R  C  W  W  R  T  H  F  T  Y  G  L  R  S  N  D  C  S  R  Q  C  Y  I  W  S  D  W  P  K   : G  R  K  F  R  C  W  L  W  K  F  N  Y  V  P  S   : G  W  T  K  E  S  S  *  N  V  V  F  N  K  V  L  H  S  F  *  S  R  E  N  G  T  C  E  Y  C  C  S   : S  R  *  V  G  S  R  N  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92984" stop="92694"/>
                    <exon start="91894" stop="91772"/>
                    <exon start="91350" stop="91249"/>
                    <exon start="91084" stop="91046"/>
                    <exon start="90941" stop="90843"/>
                    <exon start="90533" stop="90486"/>
                    <exon start="90306" stop="90211"/>
                    <exon start="90010" stop="89984"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHFFKLPRMIEEDLNTMRRRVASVANHLLPIPLAQNVFSSIGFSNCSSSSMNDNYHKIHGEVPNHEPVWRLIPSDDESGKDFTDIIYEKAVGEPIAKITINRPDRRNAFRPHTIKELIRAFNDARDDGSVGVIILTGKGTKAFCSGGDQALRSKDGYADFESFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYTASEAEKMGLVNTVVPVDKLEAETI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 377 chains have been computed
$ 
$ memory statistics:
$ 364960 bytes spliced alignments in total
$ 176 spliced alignments have been stored
$ 2073 bytes was the average size of a spliced alignment
$ 26552 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1770 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 424 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 03:05:01
-->
