<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 03:06:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9135-2" ref_strand="+" ref_description="SGN-M9135-2 C2_At5g60190-2 [cosii_markers]">
      <seq>aaaaattgaaagcgcctgaaatcggagtgccaccgggaatcataacaacgtttccggttcaagcagtttgagaaatcagttgccggagaacgaacggagagattcatcggaaccctataccgaaacaatttgcagtggcaccatggctaaatccggagcagatgagaagattctcagctacaacgatgtcgttcttcggcgatcagatttggacattctcaatggtccttattatctcaatgaccgcatcattgagttctattttagctatctcagctcactctttccatctgacgacatattactggtaccaccttctattgctttctggattaaagagtgtcctgatcctgaaagcctgaaggatttcatggaaccacttcatctttctcgaaggaagttgattctcttacctataaacgataattctgacgtgtgcatggctgaaggtgggagtcattggagcttactggtttttgatagaaactccaatgtatttgtacatcatgacagcagttccgggtgcatgaatgagtatcatgccaaacaagtatacaaggctactcttccctatacatcatccaatgccacttataaagagtgtccaaacatgccaaagcaagttaatggttatgattgtggcgtgtatgtcttagctattgcaagagtcatctgtcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="+" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8923" stop="12380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9223" g_stop="9349" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9350" i_stop="11527" i_length="2178">
            <donor d_prob="0.498" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11528" g_stop="12080" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="680" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="+" ref_id="SGN-M9135-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9135-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9223" e_stop="9349"/>
          <exon e_start="11528" e_stop="12080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGAAAGCGCCTGAAATCGGAGTGCCACCGGGAATCATAACAACGTTTCCGGTTCAAGCAGTTTGAGAAATCAGTTGCCGGAGAACGAACGGAGAGATTCATCGGAACCCTATACCGAAACAGTGAGTTTCCGGATCCACTCCTTATTAATGACGATTCACTACTTGTCTCAAAACGGTGACAGTATCTCTAGACTACAGTTGATAACTTATATTTCTGTCTTTCATATGATTTGAGCATAAAAAGCTTCATTTTTTCTTTGTGAACTATGCGTTCGCTCATTGCACTTCGTGGAAAATCAAATAATTCTAGCTCCATTTTGACTTGTGTAGATATGATGTCGAAATTCGTCGATGGTTTAGTATGTGGAGATTAAAAAGTGGAAGATGTTACATTGTATTTAAGTAGTGATAACAGTCATGAATTGCCTCAAAATATATGCTGTTGCTCTTCATTGATAAATTTGAATTCGTGTATTGTGAATTGGATGAAAAACTTGATATTGAGTGGAAGTCTCTGACTTTTTTCTTCGTAGTGTTAGACAATGGAACTGTTATGAACAAACTGTCAGGTTGTCTTTCTTGGGACACTTTGGAACTGTTTTGGTTTGATGGTTTCCATGGGCTGTACTGAAATATGATACGGAGATATTGAGAGAGGAAAGAAGGAGGAAATTGATTATGTTTTTGTATCAGTAGGAAAGCAGAGAATGAATCTCATTAACCTGAATGAAAATGAATATAAACAGTATAAGCTTATATTGTAGCTACACTAACCGACTTACTTGCTAATGCACGTAACCAACTAATGCTTTTTAACTACTCAATAACAAACTAACCAAATAATTAGTTACAGGCTGAACTTATTAAGTGACTCCACTGTTCTCTGGCTACAAGTTAGATCTGTAGATTTATAGGTACGTTCAATTAGAATCTTGATAGGTGGAATTCCTTCTTACTAAAAGGCATTCTTACATTATGATTACAAATAAAACAATTTATTTATGTACTCCCTCCATTCATTTTTAGCTGTCACGTGCAGCCTATTAATGCAAGGGTGAGGGGAATTTATTCCCTTGCCATATACCTTACAAGGTGTGCGGTACATAATGCCTTATAAGGCGTGGTACAAGGTGCCGTGATCCTCACGCCTTACAATAAAAGTTAAATGTCTTCCATTAATTTTTATTGTAAGGTATGGTGTCCCTCACGCGGCTACTCCTTTGGTTTCTTTTCATTTCTGTTGCCCTTCTGGAAATTTTGATTAAAAAAGGGTTGCCCTTTAGGCTCCGGACTCCTATTAAATCCTTTCATGACTATTGTGAGCAGAAAAGATGAGAGAGGATCCCCGTGTCTGAGACCCCTTTCAGAAAGAAAAAAAAACTTACATGTTCTCCATTCTCCAAAATAGAGATCTTGATAGTTTTGATACAAAAACTAACTAATTTCAGCCACCTCTCTCCAATTTACATGATTTCAATTAGCACAAATGATTAGTTGCTCATCATATCTTAGTCCGAGTCTCTTTACAGTCTGGGGAGATGGAATTCTTGTCTGTCATGCAATATAATAGAAAAAGTGAGAGAACTTCAAAACATTGTGTATTGACATATATGCTCACAACCTAGAGAAGTGTGAACCGTTATCATCTTTCATAAAGTCTGATCAATGTATATTTTCATTCATGTGCTTTAGTTTACTTTCATGATATTATTCCTTTTTCACGAAAATTGTCCAACTGTTTCTCTGATGGGTTAAATCTCTGTTGCATTAGGAGCCAAGTCATGCACCACTATACTAATTATGAAATGGTAGAGAATATCCACTTTCAGATTTAGCAAGGCAAAGCTAATGTATTATGAGTTCTGACCTTCAACATAATAACCTGTTCGATTATCTGATTTGCATAGATATGAAGGATATTATCTATGATGGTAAGATAAGGAGGAAGTTTTGTGTGGTACTATGGTTGAAGTTTGCTTTGGTTCAAGACATATAATCTCTCCTAAGTGTTTATGGACATTCTATCTCGTCTTCTAAGTGATTATGGTTACTCTATCTCTTCTCCTGAGTGTTTGTGGACATCCTTTGTTTTCTTTCACCTCATATTTTGGTCAAAGTACTGGTCATGTTTGAACAGATTCATTTTTTTTTTTTGTGAAATCATGCAATTCTATTGAAGTCGTACTAACAAAGTAGTGAAGTACTGATATATTTGAACAGAATGAAGAAAAATATTCACTTGTTTTTTTTCCTTCCTATATTTCCTTATTGTATCTAATTCTTGTGTACTATGTATAGATTTGCAGTGGCACCATGGCTAAATCCGGAGCAGATGAGAAGATTCTCAGCTACAACGATGTCGTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACTTCATCTTTCTCGAAGGAAGTTGATTCTCTTACCTATAAACGATAATTCTGACGTGTGCATGGCTGAAGGTGGGAGTCATTGGAGCTTACTGGTTTTTGATAGAAACTCCAATGTATTTGTACATCATGACAGCAGTTCCGGGTGCATGAATGAGTATCATGCCAAACAAGTATACAAGGCTACTCTTCCCTATACATCATCCAATGCCACTTATAAAGAGTGTCCAAACATGCCAAAGCAAGTTAATGGTTATGATTGTGGCGTGTATGTCTTAGCTATTGCAAGAGTCATCTGTCAGT</genome_strand>
        <mrna_strand>AAAAATTGAAAGCGCCTGAAATCGGAGTGCCACCGGGAATCATAACAACGTTTCCGGTTCAAGCAGTTTGAGAAATCAGTTGCCGGAGAACGAACGGAGAGATTCATCGGAACCCTATACCGAAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCAGTGGCACCATGGCTAAATCCGGAGCAGATGAGAAGATTCTCAGCTACAACGATGTCGTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACTTCATCTTTCTCGAAGGAAGTTGATTCTCTTACCTATAAACGATAATTCTGACGTGTGCATGGCTGAAGGTGGGAGTCATTGGAGCTTACTGGTTTTTGATAGAAACTCCAATGTATTTGTACATCATGACAGCAGTTCCGGGTGCATGAATGAGTATCATGCCAAACAAGTATACAAGGCTACTCTTCCCTATACATCATCCAATGCCACTTATAAAGAGTGTCCAAACATGCCAAAGCAAGTTAATGGTTATGATTGTGGCGTGTATGTCTTAGCTATTGCAAGAGTCATCTGTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6909-2" ref_strand="+" ref_description="SGN-M6909-2 C2_At1g60440-2 [cosii_markers]">
      <seq>gcacgaggctcttttttgaacaaaatgctatatattcttcgccgatcgtgatttttttttccaatcagaattgtattttccacttaactgagtgttctttgaagaagaagaagcggcagaaggatcggatatggaggttaaaggaattgatgggaaattagaaaagagtgattccacttctgctgatgaaatttcacatttgtctattgacattggaggctccctcatcaagattgtatacttttcaaccaacagtaagtgcagcacaaatgatgaggcaccaacgttatcaaaagaaagacaggaagttcccaatggagaccttaaccatcacattcttagtggcaggctttatttcgttaaattcgagactagcaagattgaggactgcataaagtttttgtcttccaagaaacttcaacaatgcggtgctcaatgtcatcattctcatgctgttgacaagatcaagattaaggcaacaggtggaggagctttcaagtttgccgatctattcaaagaaaaacttggcctaactctggacaaggtagaggaaatggagtctgttgttactggagcaaattttctgcttaaggctgtcaaccatgaagtttatacgtatattggaggtcaaaaggagtatgtgcagatagatcagaatgatttgtatccctacctccttgtcaacattgggtctggggttagcatgataaaggtagatggagatgggaaatttcagagagttagtggaactagcgtcggtggtggcactttcttgggactagggaaacttttgaccaaatgccaaagttttgatgagttactggaattgagccatcagggaaacaacagagtgatagacatgctcgttggagatatttatgggggattggactattcaaagattggccttgcatcaacagccatagcgtctagcttcggcaaggcaatctcagaaaacaaagagctcgaagactacaaaccagaagacattgcccggtccctcttaaggatgatctcaaataacatcggacagattgcatacttaaatgctcttcgttttgggctcaagcgcatctttttgggaggattcttcattcgtgaccatgcttatacaatggacacaatctccgttgcagttgatttctggtcgaagggtgaggccaaagcaatgttcttgcggcatgaggggtttcttggagccctaggagctttcatgaactacaaagatgaaagtacagattccatgccccctcagttagttgagcaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62955" stop="53933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62658" g_stop="62433" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62432" i_stop="61039" i_length="1394">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61038" g_stop="60829" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="428" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60828" i_stop="59762" i_length="1067">
            <donor d_prob="0.548" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59761" g_stop="59715" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="475" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59714" i_stop="58751" i_length="964">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58750" g_stop="58634" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="592" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58633" i_stop="57937" i_length="697">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.705" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57936" g_stop="57817" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="712" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57816" i_stop="57253" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57252" g_stop="57158" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="807" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="57157" i_stop="57067" i_length="91">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57066" g_stop="56973" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="901" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="56972" i_stop="55778" i_length="1195">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.867" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55777" g_stop="55646" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="902" r_stop="1033" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="55645" i_stop="54905" i_length="741">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54904" g_stop="54792" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1034" r_stop="1146" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="54791" i_stop="54357" i_length="435">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="54356" g_stop="54232" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1147" r_stop="1271" r_length="125" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-M6909-2" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>1279</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6909-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62658" e_stop="62433"/>
          <exon e_start="61038" e_stop="60829"/>
          <exon e_start="59761" e_stop="59715"/>
          <exon e_start="58750" e_stop="58634"/>
          <exon e_start="57936" e_stop="57817"/>
          <exon e_start="57252" e_stop="57158"/>
          <exon e_start="57066" e_stop="56973"/>
          <exon e_start="55777" e_stop="55646"/>
          <exon e_start="54904" e_stop="54792"/>
          <exon e_start="54356" e_stop="54232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAGTAGCTCTTTTTTGAACAAAATTCTATATATTCTTCGCCGATCGTGATTTTGTTTATTCATGACAGTTAGAAAATTCTATTTTTCCACTTAATTGAGTGTTCAAT-TTGAAGAAGAAGTGG-AGGAGGATCCGATATGGAGGTGAAGGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATCGACATTGGAGGTAATTTTTTGTTCGAATCGTACATTTCTGGGGTTTTTTTTTTGTTGGTGTGTGAGATCTTGAGATTCTTATTTGTTAAAGTGAAACGTGCATTTTTAATTTTAATGTGATTTTGGAGAGTTGTTTGTTTTCTGTTTCTTATTAGTTTGACGATAGAGTTTAAGGAAAAAGAAAAAGAAAAGATCTTTTTTTTTGTATTGAGACTCATAATTCAGTTATGTTAACTGAGGAACTAAGAAAGAGAAATTTAGAAACTTCTGGAATTGCTATGTGCTTGATGGTTTATACTGGACTACATGTTTCAATATGTGTTGCTCCAACTCTTCAAAAATATTATTGGGTTAGTGTTGGATGGAGTAGTGCATTTTTGGAGTATACGACACGGGTGTGGATTTTCTTTTTTGGAGAGTCTGAGCAATATAGGTTTCAATGAGGGTTAAAGGGGGATGAATGAGATGGCGGAGTAATTGATTCATAGAAATGAAAATGTGGAAAAAATGATATTCATATATGGCTGTATTGCACTAGTTCACTAGTTCTACTTAATTGAGTGATGATCCAACTTCCTTTTTTCATTTCGCAATCCTATGTAGTGATATATCATTGTATCATGTTTTTTTCTCTGAGCTCGAAAGGTTGAAGTTGTTCATTTTAATCTTAAATAAGAGGGAGTCTTGAGCGAAGAGGCGGACATTTGAATGGCAAAACATGGGCATATCCAACAGGAAGTGGTAAACGTGGTTGGACAAGTGTAAAAGAAGACTGGATTAAAACCATTTATATGAGATTGTCGACAATCGGAACGTATCAATCTTGAAGAAATGATTCCCTAGTTTGGAATAACAATTGTTGGAATTGACTGGTCAAAATTAACAAAAAGACTCTTGTTGGAATTGGTAGTTGTTCAAAGTCTAATCTAGCTGAAACCACTCTTTGAAAACACAGAAATATCATCAACTGAGAGTGATCTCCAGAAGTCAACCAGTTTCTTCTGTGCTACTTAACTTAAGCATTTTTGTAGATTATCAACTTTTAGATAGATGGTTTATGACCTCAAGATACATCTGAATGCGTCTTAGTGAAAATTCTTGTTTTTCTTTGCAACAGAACTTCTGTCTTAGTTTAAAATTGTCATTTCCTGCCCTACTTTGGAATTTGGAAGTCCTTCCGTTCCATAAAGGGATATAGAATCTCACTAATTTTTTCATAAGTGGAACAGAAATTAACTGTTTTACAATATATTGATAAGCATCTCCTATGTACACAGTCAGATATTAAAGAAGCTTTATGCAACTTGGCTAGCTTTAAAGATCCTCCTACTAACTACCTATTAAAGAATATTTTGAGGACCAAAATAGGAAAAATGCTAAATGAAAGGAACTTTTCTTTTGCAGGCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTCAGTGGCAGGCTTTATTTCATTAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAAAAATGCGGTAGGTATTCTTTGTGGTGCTTACACCTTAGATGTAATTGTTTTTCCTATGCTGACTTAATTGGTTATGAACTGGCAGCTAGGTAAACATTTAGGGAGCTTGATTATGAACATGAACTTAATATATTTTGATAAGTGAAGAAGAATTTATTGTTTCACCTTTGATTATACGCAAATCTAACTCATTGGAGCTGTCAGCATCATTTGGAATATGTACATGTGTGGCTGAGCTTGATCCTGATTGTCACTCTTTCTTTTGTTTTTAAAAAAGAAACGGATTTCCTTTTTTATTTAGTTCACCCAGATTTTGTAATGCAGCTCATAATTCACAGTATACACATGAACAAAATTTTCAATTTTAGCCACGGAGTTTTAAATTTTTTATCTTATGTCTGCTCATTTGTGTTTCTTTCTGTCCGGTTATTCATCTTTACAAAGTGAAGTAATAGAGGCACAGGGAAAGGATTCTTTTCCTAGTATAGCTCTTCTCCAGGTGTAGTAGAGTTAAGAGAATGAGAACAAAGATGGCCTCTCAATGGTCAAAAAGCTAGAATAGAGAGGACATGAAATAAACTCTTGCTCGTAAGTAGCAGTGAGAGAATTCAGGAGTTGCAGGAAATTGGAAAGAAAAAGAAAACAGATCAGCTGGATCTACACTTGAGCGGTTGCTTTAACACTAGCATAGACTTTAAGATGTTAATTTACTTAAATATTTTATTAGTGATAGTGGAAGAACAATATTAAATTATCACTAAGTTAACGTGGCACAAGAAACATCTGTACAAACTTTAAAGTGTGGATGATTGAAAGAATTTGAATTCTTGCAAGTGAAGTGTACAGAATAGCACCTTTTTCATTACCTTGGCGTATTTAAAGTGTACAAACAGTCTAGTACGGACAGAAATATGGTTTATATGTAGTTTCAGTTAAGCTTTTAGGTACTCTGGTCACCGTAGGAATCATATGCTCAGTTTAATTAAAGTTTATACTCACAGTTTGTTGTACTTCTTTTGAATAAGTTGTATTATATCATGACCTTCCTAAATCTTACATATTACAATGTTACAGGTGCTCAATGTCATCATTCTCACGCTGTTGACAAGATCAAGATTAAGGTAAAGGAGTTATTTCAAAAGATGTTGGTTCTGTTTCCCACCTCTTTTTCTTTTTCTTTGCTCAATTAGGTGATTATAGGAGGTTTTCCTCAAGACATAGTTTTTTGAGGAATTTATATCCTAAAAAACTTCATCAGAAAGAAACAATATTTGTATCCATTGCGGGATGAAACAAGCTCCTAGAAGTCCAGCAGATCAATTCTGGTTTGCTGGAGAAGCTACTCAATGATAAGTACTGAGGAAGCTACACACTGCAGTCTTCTTGTTGTTTGTACTTTCAAAGTTTAATACTTCTTGAAAATTAAGTTTTTATAAAGTGGAATAAGTAGTGTATGCATTTCTCCTTCTAGAATAAATAAATGCATAACAAAATAAATAAATAAGTGCTCTCTCTTATAATTTAAACTGTAAGATAAGGTGCTTTAGGTCAATTGATATGGTAGTAAGTAGAGTTCTTCAATTTGAGTCTCACGCAGATTAACAAAATAATGCGCATGCTTTGCTAACCCAAAAGAAGAAGGAAGAGGCTACATGGGGACGTGGTAATGACCTGAAATAAATAAATAAAATGTACTCTGTAGTTCAACTTTTAATTGGAATGTCCACAATTCAATGAATTGTAATTAGACTAATGTGCCGGAGTTAATAGTGTATGCATTAGTGTGTGATCGGTAAAACGTTCTAAATACACTAGAGACAGTATTCATAAAAGATTTCAAGCTTAGAGCTAAAGCATTGCACAGAAACCTTTGCATGTAGTACAATTTTCTGAAAACACATTATCAGGTCTTGTAGATGTCCTCTGCCAATGGCTGGAGTATATCTTTTTGGGGGTCAAAGCACCCATGGTCACCGAAGAGCTGTAGTAGAATTTTTCCTCATAATATTTGTAACTAATTTATATGGTGAAATGCTAAATTTATATGACCCATGGAACCTTTTGATGAGTTTTATGCTTGAACAGGCAACAGGTGGTGGAGCTTTCAAGTTTGCCGATCTATTCAAAGAAAAACTTGGCCTAACTCTGGACAAGGTAGAGGAAATGGAGTCTCTTGTTACCGGAGCAAATTTTCTGCTTAAGGTGGGTTTTCTTTTATAGCAGAAAGCAGTATTTGGTTTGTACTATTTTCTTCAGATATTGAAGTCCAGGCACATGAAATCCTTTTAAAATAATTTATATTTCTTTTGTCCGCCAATCTTCAGCTTGGTTTGCTTAAACTGAATAAGTACCTGGAAGGTATTTGTGGTCTCAGGAATACATATGTGTTTTCTCTAAATTAGATTCTTGCTTAGGGAAATGATTGTGTGTGTATAGCCTAATTTACTGGGTTTATTGTTTTATTAATTTATCATGATTATGTGTTACTTTCTTGATTGAATGCTGCACCCTCAAGATCGGTAAAAGATTGATAAAGGCACATTTCCCATGGAAGTGGTTTCTCTTTTCTCTCCTCCGTCCAGTATTTAGCTGAATTGAGTAGAAGTAACATATGGAGTAATTTTCCCTTTCTTGGTATGGTACATTTCGATAATTTCTGGTAAATGAAGTACTCTTTTTAAGGCCAGAAAATCTGTTAATTTTTTTACTCTTTTCCACGAGACCAAGAAGTCTCCAGGATTCAAGCCTAACTAGTGAGGCTAAGACCACATTGGCAACAGAAACCCTTCTCAACTGGATAAATTTCGTGCTCTTTTCTAATTTCAGTACAAAATATTTTATTTTATTTTTAAAAGAAAGAGGTTTGTTTGACCCCATTCCTCTCTTTTTCTCTGAGCAGGCTGCCAATCATGAAGTTTATACATATATTGGAGGTCAAAAGGAGTATGTGCAGATAGATCAGAATGATTTATATCCCTACCTCCTTGTCAACATTGGGTCTGGGGTTAGCATGATAAAGGTAAGCTTCACAGCCTAGATTCCTTCAATTCGATGTGAACACTTGTTCACACTGATCTTCAAGGGTTAGGACCTGCAAGGAGTTGACCAAAGCTCTCCTTATCCTATTTCACGCATGATTTAGATGAAATTCCATAAGCTTCATACTGTTGTGCTATTTTCTAACATACAGCTTTCTTCTCACTGTTTTCAACGTGTGGGTGCATTCTTATTGCTTATATTATCTCGTGCAGGACAAGCAGTTAATCTTCTGCATAGTGTTAGCATCCAATCTATAAATTCAAAAAGTTAATACCTACAACCACTATGTTATTTTTCATGTGTTAATGAGGAAAATATTTCCTTTGAATTATATTTCTGATGATGTTTTCATTAACACATTTTTTTAGAACTAAAAACTCGATCAAAACTGTTCTAGTAATATAGGTCTTCGATTTGTTCATTTTTCGCTTCTTTAAATGCTGACACTGCTCACAAATAATTCTGCATACGCCACCGTGATTTTTAGTACTTCATAGCTGACTCGCTGTTTGTTATATCAATATTTTATTTTTATTCCTTTTAGGTAGATGGAGATGGGAAATTTCAGAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGACTAGGGAAACTTTTGACTAAATGCCAAAGGTTACTTTCATTTCAATTATAAGTAACGATTTTCAATATCATTAATTGTTTTCTCTTTCTGCTGAATTTTCTTATGTGTTCGTTATTACAGTTTTGATGAGTTGCTGGAACTGAGCCATCTGGGAAATAACAGAGTGATAGACATGCTCGTTGGAGATATTTACGGGGGATTGGACTATTCAAAGGTATAAACTTTGATGTGTACTTTGTTTTTCTTTATGCTCTTTTACACCTTTTCTTTCTTTTGGATCTGTTGTAGTTTAAACTATCTCAGGTCCACTATGTCACATCTTGGATATAGAAAGTCTAAATGAATAATGGAAATGGTCTACAAAGTCCAAACTTTAGTCCAAGTTGAGCAATTTCTTTCCCAACTCCCAATTTGTGTCCCATCACATCCTCAATCCACTATGTTTTGGCTGTAAAGGTTCTCTTATCAAGATAGGTGAAAGTAAATTCATTTTTGATCATAAGCAAAAAGGGGATGACACTAGTAGAGTGAACTTTGCTTGTGCCTTTCATCACTTGGAATTGTGAATATTAAAGAAATGATAAGTTGAGTCAACCGCCCTCTTAAACCTTTTTTTCTCTTCTTTCTGCATCTCCCTTTTGTTCACATTCCTCCAATCTACTTTCTGTTTTTCTCCGGATGTGCTCTGCCAATGCAAGACCTTTATGCAGGAGAATTTTAAGGCTAGCTTGTTACAATTTACAAGTTCATGTCTTCTTGTGTTACCTTCTCTGAATCGATAAATTGCACCCCCCCTGAGTGGATTTGTTTGTCTTATTTTGTCTTGCTAATTCTCTAAACACTTACTGGGCCTCTTGTGTACAGAAATTCTCATTTCATCCCAAAAGTATGGATGGGGTCACAAACTTGTTTCCAATTGTCTAAATTTTCGCAATTCCTTGTCGACACCAGGACCCAGAAAGAAATGTTCCCAGTCATGATGTTCACTTTGAAAAGGTGCTGCAAACAATGCCAGACCGAAATTGGGACTAATTCTCTTCTATTGCTTGAGATATGCATCGCCCCTTTAGTTGGTGAGAATTTGGAGAAAAGTCATTAAAATTAGGGAAAAGGCTCTAAAATATTCCTCTACTATACAAAATGTCTTAATTTCATCCTCCCTCCATTATACTTAGAGGTTATCCATACCCCATTAGCAAATCCTTTTAGTTGTCAGTTGTTATAGATGAACTCATTAACTCCACCAAGCAGTTCCCTATTGTACCTATGTTTCTGCTGTTGGAAGTTGGCCGAGTAATTGAAATCTATCATAATAGGAGTTGATGAATTTTGCAAATCGAGTTCCCATATTTTCAGTTTTTCTAAATCTTCATATTCAGGGTGATTAAGAATTTAGTGATTTATGACAGATTGGCCTTGCATCAACAGCCATAGCGTCTAGCTTCGGTAAGGCGATCTCAGAAAACAAAGAGCTCGAAGACTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAGGTAATTATGCGGGTCAAGATGTTTCTCTCAGCAGTATCTGTAGCCTTTCCTAACTGAGAATATTTCATTTCTCTCCATATGATGAATAATACTGTTCCGATTAGATTTGTTTTGCATACTACTCTCCTCTCACAAGGATACAAAGAGGGATTGAAAGAAAACTCAGGAGAAGAGCAGATAGATAATCCACCGGATACTAATTGGATACCTCGTATTGCACGTTTTCATTTCATGCTGACAGTAACTCTGTATATTCTTGGACATTTGATTGTAACATGGGATATTGTTGTTAAAATGACATCATATGTTGGAAGATACTAAAACCTAATACAACTTCTGCATTAGTCTTTAGTCTTTTCATTGCTAGAAACTGTCCGGTGGTGTTATAGACATGAATCTGCTACTTTGGTTCCTGAATGAATTTACATTTCCTATTTGAAACATTTCATTATAGTAGTCTTCATTAAATGAATTGATTTTTATATAAGTGGCACCAAGTTGGTCTATGGTTTAGTATGTTAGATATTCTGTTCCGAAGTGATGCTTTGACTGAACAAGAATGGCAAACATGAACACCTGAATAACTTGAGAAGTATGACTTTGCAACCAGCGCTCACGAAATGGAAGAAATATAGGGCCTCTCCTTCCATTCTTTTGCTATAATTTATTTGTTAAAATTGTTAAGAAGTCATTTTCTTATTGTTGCTGACTTTTTTTCTTCTATTGGTTTTGCTTTGTTAGATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTGGTAATTGCTATATCCACTTATTGTCAGATAATTGGTATTTTCCTTATTACCAAGTTACTTACAATCATAGCTCCCATAATTTTTCTTCTGAATATAAGCCTTGGTTAGTAGAGCTACCCGGCACCCATGCTAGTGGGAAGTAGTGAGGTATGCACAAGCTGGTCTGGACACCATCCTTACAAAAGGAGATCTTTTGAATAACATTAGTTTCTTTAGTGATGAATTAGTGTGAAATTCGTACGATATATTAATCGATTGGCACACTCTTTTAACGCAAGGGATAAATAGTTCTCACTAGCTATGAGTACTATTCTAAAAAAAGAAAGAGCACTCACCTCACTAGCTAGTTCTGAAACATGGTTTCACAATTTATCACTGTTGACTCCTCTAGGTAATTTCTCCTGAATTCAAGTTAACAGAATGCACTACGTGCAGGTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAG</genome_strand>
        <mrna_strand>GCAC-GAGGCTCTTTTTTGAACAAAATGCTATATATTCTTCGCCGATCGTGATTTT-TTT-TTC----CAATCAGAA--TTGTA-TTTTCCACTTAACTGAGTGTTCTTTGAAGAAGAAGAAGCGGCAGAAGGATCGGATATGGAGGTTAAAGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATTGACATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTTAGTGGCAGGCTTTATTTCGTTAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAACAATGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCAATGTCATCATTCTCATGCTGTTGACAAGATCAAGATTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGGTGGAGGAGCTTTCAAGTTTGCCGATCTATTCAAAGAAAAACTTGGCCTAACTCTGGACAAGGTAGAGGAAATGGAGTCTGTTGTTACTGGAGCAAATTTTCTGCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAACCATGAAGTTTATACGTATATTGGAGGTCAAAAGGAGTATGTGCAGATAGATCAGAATGATTTGTATCCCTACCTCCTTGTCAACATTGGGTCTGGGGTTAGCATGATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGGAGATGGGAAATTTCAGAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGACTAGGGAAACTTTTGACCAAATGCCAAAG...........................................................................................TTTTGATGAGTTACTGGAATTGAGCCATCAGGGAAACAACAGAGTGATAGACATGCTCGTTGGAGATATTTATGGGGGATTGGACTATTCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCTTGCATCAACAGCCATAGCGTCTAGCTTCGGCAAGGCAATCTCAGAAAACAAAGAGCTCGAAGACTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCATACTTAAATGCTCTTCGTTTTGGGCTCAAGCGCATCTTTTTGGGAGGATTCTTCATTCGTGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGGTTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGAAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6909" ref_strand="+" ref_description="SGN-M6909 C2_At1g60440 [cosii_markers]">
      <seq>tcaattcaagaagataacaagaattggatatggagggaaagggaattgatgggaaattagacaagagtgagcaatcttgtgaagaaatttcacatttgtctattgacattggaggcaccctcatcaagattgtatacttttcaaccaacagtaagtgcagcactagtgatgaggtaccagcattatcaaaagaaagacaggaagttcccaatggagaccttaaccatcacattcttagtggcaggctttatttcgtcaaattcgagactagcaagattgaggactgcataaaatttttgtcttccaagaaacttcaacagtgcggtgctcaatgtcaccattctcatgctgttgacaagatcaagattaaggcaaccggtggtggagctttcaagtttgccaatctattcaaagaaaaacttggcataacgctggacaaggtggaggaaatggagtctcttgttactggagcaaattttctgcttaaggccgtcagccatgaagcttatacatatattggaggtcaaaaggagtatgtgcagattgatcagaaagatttatatccttacctcctcgtcaacattgggtctggggttagcatgataaaggttgacggagatgggaaatttcaaagagttagtggaactagcgtcggtggtggcactttcttgggtttagggaaacttttgaccaaatgccaaagtttcgatgagttgctggaattgagccatcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62830" stop="56845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62553" g_stop="62433" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.810"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62432" i_stop="61039" i_length="1394">
            <donor d_prob="0.992" d_score="0.82"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61038" g_stop="60829" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="324" r_length="210" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60828" i_stop="59762" i_length="1067">
            <donor d_prob="0.548" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59761" g_stop="59715" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="371" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59714" i_stop="58751" i_length="964">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58750" g_stop="58634" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="488" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58633" i_stop="57937" i_length="697">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.705" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57936" g_stop="57817" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="608" r_length="120" r_score="0.925"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57816" i_stop="57253" i_length="564">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57252" g_stop="57158" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="703" r_length="95" r_score="0.937"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="57157" i_stop="57067" i_length="91">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57066" g_stop="57035" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="735" r_length="32" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-M6909" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62553" e_stop="62433"/>
          <exon e_start="61038" e_stop="60829"/>
          <exon e_start="59761" e_stop="59715"/>
          <exon e_start="58750" e_stop="58634"/>
          <exon e_start="57936" e_stop="57817"/>
          <exon e_start="57252" e_stop="57158"/>
          <exon e_start="57066" e_stop="57035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTGAAGAAGAAGTGGAGGAGGATCCGATATGGAGGTGAAGGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATCGACATTGGAGGTAATTTTTTGTTCGAATCGTACATTTCTGGGGTTTTTTTTTTGTTGGTGTGTGAGATCTTGAGATTCTTATTTGTTAAAGTGAAACGTGCATTTTTAATTTTAATGTGATTTTGGAGAGTTGTTTGTTTTCTGTTTCTTATTAGTTTGACGATAGAGTTTAAGGAAAAAGAAAAAGAAAAGATCTTTTTTTTTGTATTGAGACTCATAATTCAGTTATGTTAACTGAGGAACTAAGAAAGAGAAATTTAGAAACTTCTGGAATTGCTATGTGCTTGATGGTTTATACTGGACTACATGTTTCAATATGTGTTGCTCCAACTCTTCAAAAATATTATTGGGTTAGTGTTGGATGGAGTAGTGCATTTTTGGAGTATACGACACGGGTGTGGATTTTCTTTTTTGGAGAGTCTGAGCAATATAGGTTTCAATGAGGGTTAAAGGGGGATGAATGAGATGGCGGAGTAATTGATTCATAGAAATGAAAATGTGGAAAAAATGATATTCATATATGGCTGTATTGCACTAGTTCACTAGTTCTACTTAATTGAGTGATGATCCAACTTCCTTTTTTCATTTCGCAATCCTATGTAGTGATATATCATTGTATCATGTTTTTTTCTCTGAGCTCGAAAGGTTGAAGTTGTTCATTTTAATCTTAAATAAGAGGGAGTCTTGAGCGAAGAGGCGGACATTTGAATGGCAAAACATGGGCATATCCAACAGGAAGTGGTAAACGTGGTTGGACAAGTGTAAAAGAAGACTGGATTAAAACCATTTATATGAGATTGTCGACAATCGGAACGTATCAATCTTGAAGAAATGATTCCCTAGTTTGGAATAACAATTGTTGGAATTGACTGGTCAAAATTAACAAAAAGACTCTTGTTGGAATTGGTAGTTGTTCAAAGTCTAATCTAGCTGAAACCACTCTTTGAAAACACAGAAATATCATCAACTGAGAGTGATCTCCAGAAGTCAACCAGTTTCTTCTGTGCTACTTAACTTAAGCATTTTTGTAGATTATCAACTTTTAGATAGATGGTTTATGACCTCAAGATACATCTGAATGCGTCTTAGTGAAAATTCTTGTTTTTCTTTGCAACAGAACTTCTGTCTTAGTTTAAAATTGTCATTTCCTGCCCTACTTTGGAATTTGGAAGTCCTTCCGTTCCATAAAGGGATATAGAATCTCACTAATTTTTTCATAAGTGGAACAGAAATTAACTGTTTTACAATATATTGATAAGCATCTCCTATGTACACAGTCAGATATTAAAGAAGCTTTATGCAACTTGGCTAGCTTTAAAGATCCTCCTACTAACTACCTATTAAAGAATATTTTGAGGACCAAAATAGGAAAAATGCTAAATGAAAGGAACTTTTCTTTTGCAGGCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTCAGTGGCAGGCTTTATTTCATTAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAAAAATGCGGTAGGTATTCTTTGTGGTGCTTACACCTTAGATGTAATTGTTTTTCCTATGCTGACTTAATTGGTTATGAACTGGCAGCTAGGTAAACATTTAGGGAGCTTGATTATGAACATGAACTTAATATATTTTGATAAGTGAAGAAGAATTTATTGTTTCACCTTTGATTATACGCAAATCTAACTCATTGGAGCTGTCAGCATCATTTGGAATATGTACATGTGTGGCTGAGCTTGATCCTGATTGTCACTCTTTCTTTTGTTTTTAAAAAAGAAACGGATTTCCTTTTTTATTTAGTTCACCCAGATTTTGTAATGCAGCTCATAATTCACAGTATACACATGAACAAAATTTTCAATTTTAGCCACGGAGTTTTAAATTTTTTATCTTATGTCTGCTCATTTGTGTTTCTTTCTGTCCGGTTATTCATCTTTACAAAGTGAAGTAATAGAGGCACAGGGAAAGGATTCTTTTCCTAGTATAGCTCTTCTCCAGGTGTAGTAGAGTTAAGAGAATGAGAACAAAGATGGCCTCTCAATGGTCAAAAAGCTAGAATAGAGAGGACATGAAATAAACTCTTGCTCGTAAGTAGCAGTGAGAGAATTCAGGAGTTGCAGGAAATTGGAAAGAAAAAGAAAACAGATCAGCTGGATCTACACTTGAGCGGTTGCTTTAACACTAGCATAGACTTTAAGATGTTAATTTACTTAAATATTTTATTAGTGATAGTGGAAGAACAATATTAAATTATCACTAAGTTAACGTGGCACAAGAAACATCTGTACAAACTTTAAAGTGTGGATGATTGAAAGAATTTGAATTCTTGCAAGTGAAGTGTACAGAATAGCACCTTTTTCATTACCTTGGCGTATTTAAAGTGTACAAACAGTCTAGTACGGACAGAAATATGGTTTATATGTAGTTTCAGTTAAGCTTTTAGGTACTCTGGTCACCGTAGGAATCATATGCTCAGTTTAATTAAAGTTTATACTCACAGTTTGTTGTACTTCTTTTGAATAAGTTGTATTATATCATGACCTTCCTAAATCTTACATATTACAATGTTACAGGTGCTCAATGTCATCATTCTCACGCTGTTGACAAGATCAAGATTAAGGTAAAGGAGTTATTTCAAAAGATGTTGGTTCTGTTTCCCACCTCTTTTTCTTTTTCTTTGCTCAATTAGGTGATTATAGGAGGTTTTCCTCAAGACATAGTTTTTTGAGGAATTTATATCCTAAAAAACTTCATCAGAAAGAAACAATATTTGTATCCATTGCGGGATGAAACAAGCTCCTAGAAGTCCAGCAGATCAATTCTGGTTTGCTGGAGAAGCTACTCAATGATAAGTACTGAGGAAGCTACACACTGCAGTCTTCTTGTTGTTTGTACTTTCAAAGTTTAATACTTCTTGAAAATTAAGTTTTTATAAAGTGGAATAAGTAGTGTATGCATTTCTCCTTCTAGAATAAATAAATGCATAACAAAATAAATAAATAAGTGCTCTCTCTTATAATTTAAACTGTAAGATAAGGTGCTTTAGGTCAATTGATATGGTAGTAAGTAGAGTTCTTCAATTTGAGTCTCACGCAGATTAACAAAATAATGCGCATGCTTTGCTAACCCAAAAGAAGAAGGAAGAGGCTACATGGGGACGTGGTAATGACCTGAAATAAATAAATAAAATGTACTCTGTAGTTCAACTTTTAATTGGAATGTCCACAATTCAATGAATTGTAATTAGACTAATGTGCCGGAGTTAATAGTGTATGCATTAGTGTGTGATCGGTAAAACGTTCTAAATACACTAGAGACAGTATTCATAAAAGATTTCAAGCTTAGAGCTAAAGCATTGCACAGAAACCTTTGCATGTAGTACAATTTTCTGAAAACACATTATCAGGTCTTGTAGATGTCCTCTGCCAATGGCTGGAGTATATCTTTTTGGGGGTCAAAGCACCCATGGTCACCGAAGAGCTGTAGTAGAATTTTTCCTCATAATATTTGTAACTAATTTATATGGTGAAATGCTAAATTTATATGACCCATGGAACCTTTTGATGAGTTTTATGCTTGAACAGGCAACAGGTGGTGGAGCTTTCAAGTTTGCCGATCTATTCAAAGAAAAACTTGGCCTAACTCTGGACAAGGTAGAGGAAATGGAGTCTCTTGTTACCGGAGCAAATTTTCTGCTTAAGGTGGGTTTTCTTTTATAGCAGAAAGCAGTATTTGGTTTGTACTATTTTCTTCAGATATTGAAGTCCAGGCACATGAAATCCTTTTAAAATAATTTATATTTCTTTTGTCCGCCAATCTTCAGCTTGGTTTGCTTAAACTGAATAAGTACCTGGAAGGTATTTGTGGTCTCAGGAATACATATGTGTTTTCTCTAAATTAGATTCTTGCTTAGGGAAATGATTGTGTGTGTATAGCCTAATTTACTGGGTTTATTGTTTTATTAATTTATCATGATTATGTGTTACTTTCTTGATTGAATGCTGCACCCTCAAGATCGGTAAAAGATTGATAAAGGCACATTTCCCATGGAAGTGGTTTCTCTTTTCTCTCCTCCGTCCAGTATTTAGCTGAATTGAGTAGAAGTAACATATGGAGTAATTTTCCCTTTCTTGGTATGGTACATTTCGATAATTTCTGGTAAATGAAGTACTCTTTTTAAGGCCAGAAAATCTGTTAATTTTTTTACTCTTTTCCACGAGACCAAGAAGTCTCCAGGATTCAAGCCTAACTAGTGAGGCTAAGACCACATTGGCAACAGAAACCCTTCTCAACTGGATAAATTTCGTGCTCTTTTCTAATTTCAGTACAAAATATTTTATTTTATTTTTAAAAGAAAGAGGTTTGTTTGACCCCATTCCTCTCTTTTTCTCTGAGCAGGCTGCCAATCATGAAGTTTATACATATATTGGAGGTCAAAAGGAGTATGTGCAGATAGATCAGAATGATTTATATCCCTACCTCCTTGTCAACATTGGGTCTGGGGTTAGCATGATAAAGGTAAGCTTCACAGCCTAGATTCCTTCAATTCGATGTGAACACTTGTTCACACTGATCTTCAAGGGTTAGGACCTGCAAGGAGTTGACCAAAGCTCTCCTTATCCTATTTCACGCATGATTTAGATGAAATTCCATAAGCTTCATACTGTTGTGCTATTTTCTAACATACAGCTTTCTTCTCACTGTTTTCAACGTGTGGGTGCATTCTTATTGCTTATATTATCTCGTGCAGGACAAGCAGTTAATCTTCTGCATAGTGTTAGCATCCAATCTATAAATTCAAAAAGTTAATACCTACAACCACTATGTTATTTTTCATGTGTTAATGAGGAAAATATTTCCTTTGAATTATATTTCTGATGATGTTTTCATTAACACATTTTTTTAGAACTAAAAACTCGATCAAAACTGTTCTAGTAATATAGGTCTTCGATTTGTTCATTTTTCGCTTCTTTAAATGCTGACACTGCTCACAAATAATTCTGCATACGCCACCGTGATTTTTAGTACTTCATAGCTGACTCGCTGTTTGTTATATCAATATTTTATTTTTATTCCTTTTAGGTAGATGGAGATGGGAAATTTCAGAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGACTAGGGAAACTTTTGACTAAATGCCAAAGGTTACTTTCATTTCAATTATAAGTAACGATTTTCAATATCATTAATTGTTTTCTCTTTCTGCTGAATTTTCTTATGTGTTCGTTATTACAGTTTTGATGAGTTGCTGGAACTGAGCCATCTGG</genome_strand>
        <mrna_strand>TCAAT-TCAAGAAG-A-T-AACAAGAATTGGATATGGAGGGAAAGGGAATTGATGGGAAATTAGACAAGAGTGA--GCA-ATCTTGTGAAGAAATTTCACATTTGTCTATTGACATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACTAGTGATGAGGTACCAGCATTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTTAGTGGCAGGCTTTATTTCGTCAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAATTTTTGTCTTCCAAGAAACTTCAACAGTGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCAATGTCACCATTCTCATGCTGTTGACAAGATCAAGATTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCGGTGGTGGAGCTTTCAAGTTTGCCAATCTATTCAAAGAAAAACTTGGCATAACGCTGGACAAGGTGGAGGAAATGGAGTCTCTTGTTACTGGAGCAAATTTTCTGCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTCAGCCATGAAGCTTATACATATATTGGAGGTCAAAAGGAGTATGTGCAGATTGATCAGAAAGATTTATATCCTTACCTCCTCGTCAACATTGGGTCTGGGGTTAGCATGATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACGGAGATGGGAAATTTCAAAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGTTTAGGGAAACTTTTGACCAAATGCCAAAG...........................................................................................TTTCGATGAGTTGCTGGAATTGAGCCATCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6911" ref_strand="+" ref_description="SGN-M6911 C2_At1g60550 [cosii_markers]">
      <seq>acaaaattactctctttgaaaaataacaacattttttcaaattaccaagaatgatagaggaggatcttaacactatgaggagaagagtggcatcagttgcaaatcatttattgccaatccctttagctcaaaatgttttttcttcaattggcttttccaattgtagctcttcttctatgaatgataattaccataaaattcatggtgaagtcccaaatcatgaacctgtttggagacttattccttctgatgatgaatctggcaaggacttcactgatatcatatatgagaaagctgttggtgaacccattgctaagataaccatcaatagaccggatagaagaaatgctttccgacctcacaccatcaaggagcttatccgcgcatttaatgatgccagggatgatggttcagtgggagtcatcatcctcacagggaagggtacaaaggcgttttgtagtggtggtgatccggcattgagaagtaaggatggttatgctgattttgaaagttttggtcgccttaatgttttagattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93310" stop="90952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93010" g_stop="92694" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92693" i_stop="91895" i_length="799">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91894" g_stop="91772" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="440" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91771" i_stop="91351" i_length="421">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91350" g_stop="91252" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="539" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-M6911" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93010" e_stop="92694"/>
          <exon e_start="91894" e_stop="91772"/>
          <exon e_start="91350" e_stop="91252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATTACTCTCTTTGAAAAATAACAACATTTTTTCAAATTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAGGTTTTCTTCTTACAATTCTTTACCCTCTTATGTGGAATTCTTCAAAAAAAATTCCAACTTAGTAGTACCTCTGTTCTAATTCATGTGCTTCATTGTTCCAATTTTTGTGGCCTTGTTTGAATTTGAAGAGACTTTGAGAAAGGAAGAAAGACTTTTGGAAACTTGTTGACTTAACACTTCATAATAATTGAGTGGCTATTTAAGTTTCTCATTAGTGGTAAAAGAGGAAGTTTAAGCTAAATTGTTTTTAAATTTAGAAAGTTGTCATTCTTTTTTGAACAAACTAAAACGTAAATGTTGTTGGAACAAAGGGAGTATTACTTTTAGATGCCTGGCCGTTACTCAAAGCTTGAGTTTAGTCTAGTGAAAAAACCATGTCTTGAGCTCCATGGAGTTTATGTGATGAATCACAATTTGCCTATAACAAAGACTTCAAGGATGAATGTTTGCATTTATAACATGATAATGGATAACAAATTGCTAAATGGTAGATGATACTGTATTTCTCTGCTATATGTAAAGCATATTGCATTAGATCGATGACCCTTTAAAAAAAATTCCAATGACTTGCAATGCCAGTGACTGTAGAAGGAAAAATCAAATATGATTAAAGCACACGCGTTTCTCAATGATTATCAGCAACCTTAGGTTCTTGCTTAGCAGCTACTAGTAACACGGTTTGAAGCTTCTTTCTTGCTGTTAGTACTTACAGGTGACCTGAATTAATAATGTCAGGAACTCAGAAGCTGGAAATCTGGAGCTTTAGTTTTAAGTCATATTGTTTTCTTTCCTCTTGCAGATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGGAAGGTAAGTTCCCAACAGAAATATCAGATCATGTACAAAGTAGAGAAGTTATGGAATTCAATGTAGGTGTTGTGAACATTAGGCCATGTTATAAGTTTCTCTTACTAGCAAATATTCACTTAAAGCACCATGTCTTAATACTTGATGAAGGAATTGAATGACTGAATTTTAATGCACGCCTTTCCTTTTGTACTAACACCGAACCAGCTTGTTATTGAGCTCGTATTGGTCCTGTTCCATTGAAGAGTATCTCTAAGAAAAATGAGATGTCGTAGGAGTATAAATGTAGTTGGAATTTGTTGTAGATTAGAACTGAGCTCTTGTGGAGATGGTTTCTAGATATCTTTGTATAGTGAGTTAACTTCAGTAGATTGTATCATTTGGCTGTATTGCATGCATTGTTCTCAAGTATGACTTGATGCAGGGTACAAAGGCGTTTTGTAGTGGTGGTGATCAGGCATTGAGAAGTAAGGATGGTTATGCTGATTTTGAAAGTTTTGGTCGCCTTAATGTTTTAGATTTA</genome_strand>
        <mrna_strand>ACAAAATTACTCTCTTTGAAAAATAACAACATTTTTTCAAATTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAAAGGCGTTTTGTAGTGGTGGTGATCCGGCATTGAGAAGTAAGGATGGTTATGCTGATTTTGAAAGTTTTGGTCGCCTTAATGTTTTAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6911-2" ref_strand="+" ref_description="SGN-M6911-2 C2_At1g60550-2 [cosii_markers]">
      <seq>taaatacacataggatttctagcatctttttagctccctaaaattccaatgccaaaacccaataatatagcatctatcttatccatcttatcccaataaaatcaaaaacacacacatcaaaatatcatatattattgtcactccataacacaatacaaaattactcacttcgaaaaataacaacattttttcattaattaccaagaatgtcagagaaggacctcaacactatgaggaggagagtggcatcagttgctaatcatttattgccaattcctttagctcaaaatgttgtttcttcaattgggtcttccaattgtagctcctcttctatgaatgataattaccataaaattcatggtgaagtcccaaatcatgaacctgtttggagacttattccttctgatgatgaatctggcaaagagtttactgatattatttatgagaaagctgttggtgaacccattgctaagataaccatcaatagaccggatagaagaaatgctttccgacctcacaccatcaaggagcttattcgcgcatttaatgatgcccgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0005B15-oKDQE/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0005B15.1" temp_strand="-" temp_description="C05SLm0005B15.1  AC188781.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0005B15, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93464" stop="91508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93164" g_stop="92694" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92693" i_stop="91895" i_length="799">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91894" g_stop="91808" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="560" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0005B15.1" gen_strand="-" ref_id="SGN-M6911-2" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0005B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6911-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93164" e_stop="92694"/>
          <exon e_start="91894" e_stop="91808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATACACATATGATTTCTAGCATCTTTTTGGCTCCAT-AAGTCCCAATGTCAAAACCTCATAATATGGCATCCATCTTATCTCATCTTATCCAAATAA-ATCAAAAACACACACATCAAGATATCACATATTATTGTCACTCCATAACACAAACACAAAATTACTCTCTTTGAAAAATAACAACATTTTTTCA--AATTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAGGTTTTCTTCTTACAATTCTTTACCCTCTTATGTGGAATTCTTCAAAAAAAATTCCAACTTAGTAGTACCTCTGTTCTAATTCATGTGCTTCATTGTTCCAATTTTTGTGGCCTTGTTTGAATTTGAAGAGACTTTGAGAAAGGAAGAAAGACTTTTGGAAACTTGTTGACTTAACACTTCATAATAATTGAGTGGCTATTTAAGTTTCTCATTAGTGGTAAAAGAGGAAGTTTAAGCTAAATTGTTTTTAAATTTAGAAAGTTGTCATTCTTTTTTGAACAAACTAAAACGTAAATGTTGTTGGAACAAAGGGAGTATTACTTTTAGATGCCTGGCCGTTACTCAAAGCTTGAGTTTAGTCTAGTGAAAAAACCATGTCTTGAGCTCCATGGAGTTTATGTGATGAATCACAATTTGCCTATAACAAAGACTTCAAGGATGAATGTTTGCATTTATAACATGATAATGGATAACAAATTGCTAAATGGTAGATGATACTGTATTTCTCTGCTATATGTAAAGCATATTGCATTAGATCGATGACCCTTTAAAAAAAATTCCAATGACTTGCAATGCCAGTGACTGTAGAAGGAAAAATCAAATATGATTAAAGCACACGCGTTTCTCAATGATTATCAGCAACCTTAGGTTCTTGCTTAGCAGCTACTAGTAACACGGTTTGAAGCTTCTTTCTTGCTGTTAGTACTTACAGGTGACCTGAATTAATAATGTCAGGAACTCAGAAGCTGGAAATCTGGAGCTTTAGTTTTAAGTCATATTGTTTTCTTTCCTCTTGCAGATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGAT</genome_strand>
        <mrna_strand>TAAATACACATAGGATTTCTAGCATCTTTTTAGCTCCCTAAAATTCCAATGCCAAAACCCAATAATATAGCATCTATCTTATC-CATCTTATCCCAATAAAATCAAAAACACACACATCAAAATATCATATATTATTGTCACTCCATAACAC-AATACAAAATTACTCACTTCGAAAAATAACAACATTTTTTCATTAATTACCAAGAATGTCAGAGAAGGACCTCAACACTATGAGGAGGAGAGTGGCATCAGTTGCTAATCATTTATTGCCAATTCCTTTAGCTCAAAATGTTGTTTCTTCAATTGGGTCTTCCAATTGTAGCTCCTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAAGAGTTTACTGATATTATTTATGAGAAAGCTGTTGGTGAACCCATTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATTCGCGCATTTAATGATGCCCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9223" PGL_stop="12080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9223" e_stop="9349"/>
            <exon e_start="11528" e_stop="12080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.498" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9223" e_stop="9349" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.498" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9350" i_stop="11527" i_length="2178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11528" e_stop="12080" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9223" stop="9349"/>
              <exon start="11528" stop="12080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9135-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATTGAAAGCGCCTGAAATCGGAGTGCCACCGGGAATCATAACAACGTTTCCGGTTCAAGCAGTTTGAGAAATCAGTTGCCGGAGAACGAACGGAGAGATTCATCGGAACCCTATACCGAAACA : ATTTGCAGTGGCACCATGGCTAAATCCGGAGCAGATGAGAAGATTCTCAGCTACAACGATGTCGTTCTTCGGCGATCAGATTTGGACATTCTCAATGGTCCTTATTATCTCAATGACCGCATCATTGAGTTCTATTTTAGCTATCTCAGCTCACTCTTTCCATCTGACGACATATTACTGGTACCACCTTCTATTGCTTTCTGGATTAAAGAGTGTCCTGATCCTGAAAGCCTGAAGGATTTCATGGAACCACTTCATCTTTCTCGAAGGAAGTTGATTCTCTTACCTATAAACGATAATTCTGACGTGTGCATGGCTGAAGGTGGGAGTCATTGGAGCTTACTGGTTTTTGATAGAAACTCCAATGTATTTGTACATCATGACAGCAGTTCCGGGTGCATGAATGAGTATCATGCCAAACAAGTATACAAGGCTACTCTTCCCTATACATCATCCAATGCCACTTATAAAGAGTGTCCAAACATGCCAAAGCAAGTTAATGGTTATGATTGTGGCGTGTATGTCTTAGCTATTGCAAGAGTCATCTGTCAGT</gDNA_template>
            <first_frame> K  N  *  K  R  L  K  S  E  C  H  R  E  S  *  Q  R  F  R  F  K  Q  F  E  K  S  V  A  G  E  R  T  E  R  F  I  G  T  L  Y  R  N   : N  L  Q  W  H  H  G  *  I  R  S  R  *  E  D  S  Q  L  Q  R  C  R  S  S  A  I  R  F  G  H  S  Q  W  S  L  L  S  Q  *  P  H  H  *  V  L  F  *  L  S  Q  L  T  L  S  I  *  R  H  I  T  G  T  T  F  Y  C  F  L  D  *  R  V  S  *  S  *  K  P  E  G  F  H  G  T  T  S  S  F  S  K  E  V  D  S  L  T  Y  K  R  *  F  *  R  V  H  G  *  R  W  E  S  L  E  L  T  G  F  *  *  K  L  Q  C  I  C  T  S  *  Q  Q  F  R  V  H  E  *  V  S  C  Q  T  S  I  Q  G  Y  S  S  L  Y  I  I  Q  C  H  L  *  R  V  S  K  H  A  K  A  S  *  W  L  *  L  W  R  V  C  L  S  Y  C  K  S  H  L  S   </first_frame>
            <second_frame>  K  I  E  S  A  *  N  R  S  A  T  G  N  H  N  N  V  S  G  S  S  S  L  R  N  Q  L  P  E  N  E  R  R  D  S  S  E  P  Y  T  E  T  :  I  C  S  G  T  M  A  K  S  G  A  D  E  K  I  L  S  Y  N  D  V  V  L  R  R  S  D  L  D  I  L  N  G  P  Y  Y  L  N  D  R  I  I  E  F  Y  F  S  Y  L  S  S  L  F  P  S  D  D  I  L  L  V  P  P  S  I  A  F  W  I  K  E  C  P  D  P  E  S  L  K  D  F  M  E  P  L  H  L  S  R  R  K  L  I  L  L  P  I  N  D  N  S  D  V  C  M  A  E  G  G  S  H  W  S  L  L  V  F  D  R  N  S  N  V  F  V  H  H  D  S  S  S  G  C  M  N  E  Y  H  A  K  Q  V  Y  K  A  T  L  P  Y  T  S  S  N  A  T  Y  K  E  C  P  N  M  P  K  Q  V  N  G  Y  D  C  G  V  Y  V  L  A  I  A  R  V  I  C  Q  </second_frame>
            <third_frame>   K  L  K  A  P  E  I  G  V  P  P  G  I  I  T  T  F  P  V  Q  A  V  *  E  I  S  C  R  R  T  N  G  E  I  H  R  N  P  I  P  K  Q :   F  A  V  A  P  W  L  N  P  E  Q  M  R  R  F  S  A  T  T  M  S  F  F  G  D  Q  I  W  T  F  S  M  V  L  I  I  S  M  T  A  S  L  S  S  I  L  A  I  S  A  H  S  F  H  L  T  T  Y  Y  W  Y  H  L  L  L  L  S  G  L  K  S  V  L  I  L  K  A  *  R  I  S  W  N  H  F  I  F  L  E  G  S  *  F  S  Y  L  *  T  I  I  L  T  C  A  W  L  K  V  G  V  I  G  A  Y  W  F  L  I  E  T  P  M  Y  L  Y  I  M  T  A  V  P  G  A  *  M  S  I  M  P  N  K  Y  T  R  L  L  F  P  I  H  H  P  M  P  L  I  K  S  V  Q  T  C  Q  S  K  L  M  V  M  I  V  A  C  M  S  *  L  L  Q  E  S  S  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9242" stop="9349"/>
                    <exon start="11528" stop="12079"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRSATGNHNNVSGSSSLRNQLPENERRDSSEPYTETICSGTMAKSGADEKILSYNDVVLRRSDLDILNGPYYLNDRIIEFYFSYLSSLFPSDDILLVPPSIAFWIKECPDPESLKDFMEPLHLSRRKLILLPINDNSDVCMAEGGSHWSLLVFDRNSNVFVHHDSSSGCMNEYHAKQVYKATLPYTSSNATYKECPNMPKQVNGYDCGVYVLAIARVICQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="62658" PGL_stop="54232"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62658" e_stop="62433"/>
            <exon e_start="61038" e_stop="60829"/>
            <exon e_start="59761" e_stop="59715"/>
            <exon e_start="58750" e_stop="58634"/>
            <exon e_start="57936" e_stop="57817"/>
            <exon e_start="57252" e_stop="57158"/>
            <exon e_start="57066" e_stop="56973"/>
            <exon e_start="55777" e_stop="55646"/>
            <exon e_start="54904" e_stop="54792"/>
            <exon e_start="54356" e_stop="54232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.978" e_score="0.854"/>
          <exon-intron don_prob="0.548" acc_prob="0.995" e_score="0.986"/>
          <exon-intron don_prob="0.958" acc_prob="0.987" e_score="0.979"/>
          <exon-intron don_prob="0.987" acc_prob="0.705" e_score="0.974"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.967"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="0.867" e_score="0.947"/>
          <exon-intron don_prob="0.832" acc_prob="0.978" e_score="0.985"/>
          <exon-intron don_prob="0.995" acc_prob="0.833" e_score="0.965"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.854">
            <gDNA_exon_boundary e_start="62658" e_stop="62433" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.978">
            <gDNA_intron_boundary i_start="62432" i_stop="61039" i_length="1394"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="61038" e_stop="60829" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.548" acc_prob="0.995">
            <gDNA_intron_boundary i_start="60828" i_stop="59762" i_length="1067"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="59761" e_stop="59715" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.987">
            <gDNA_intron_boundary i_start="59714" i_stop="58751" i_length="964"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="58750" e_stop="58634" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.705">
            <gDNA_intron_boundary i_start="58633" i_stop="57937" i_length="697"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="57936" e_stop="57817" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57816" i_stop="57253" i_length="564"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="57252" e_stop="57158" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57157" i_stop="57067" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="0.947">
            <gDNA_exon_boundary e_start="57066" e_stop="56973" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.867">
            <gDNA_intron_boundary i_start="56972" i_stop="55778" i_length="1195"/>
          </intron>
          <exon e_serial="8" e_score="0.985">
            <gDNA_exon_boundary e_start="55777" e_stop="55646" e_length="132"/>
          </exon>
          <intron i_serial="8" don_prob="0.832" acc_prob="0.978">
            <gDNA_intron_boundary i_start="55645" i_stop="54905" i_length="741"/>
          </intron>
          <exon e_serial="9" e_score="0.965">
            <gDNA_exon_boundary e_start="54904" e_stop="54792" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.833">
            <gDNA_intron_boundary i_start="54791" i_stop="54357" i_length="435"/>
          </intron>
          <exon e_serial="10" e_score="0.976">
            <gDNA_exon_boundary e_start="54356" e_stop="54232" e_length="125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62658" stop="62433"/>
              <exon start="61038" stop="60829"/>
              <exon start="59761" stop="59715"/>
              <exon start="58750" stop="58634"/>
              <exon start="57936" stop="57817"/>
              <exon start="57252" stop="57158"/>
              <exon start="57066" stop="56973"/>
              <exon start="55777" stop="55646"/>
              <exon start="54904" stop="54792"/>
              <exon start="54356" stop="54232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6909-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62553" stop="62433"/>
              <exon start="61038" stop="60829"/>
              <exon start="59761" stop="59715"/>
              <exon start="58750" stop="58634"/>
              <exon start="57936" stop="57817"/>
              <exon start="57252" stop="57158"/>
              <exon start="57066" stop="57035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCAGTAGCTCTTTTTTGAACAAAATTCTATATATTCTTCGCCGATCGTGATTTTGTTTATTCATGACAGTTAGAAAATTCTATTTTTCCACTTAATTGAGTGTTCAATTTGAAGAAGAAGTGGAGGAGGATCCGATATGGAGGTGAAGGGAATTGATGGGAAATTAGAAAAGAGTGATTCCACTTCTGCTGATGAAATTTCACATTTGTCTATCGACATTGGAG : GCTCCCTCATCAAGATTGTATACTTTTCAACCAACAGTAAGTGCAGCACAAATGATGAGGCACCAACGTTATCAAAAGAAAGACAGGAAGTTCCCAATGGAGACCTTAACCATCACATTCTCAGTGGCAGGCTTTATTTCATTAAATTCGAGACTAGCAAGATTGAGGACTGCATAAAGTTTTTGTCTTCCAAGAAACTTCAAAAATGCG : GTGCTCAATGTCATCATTCTCACGCTGTTGACAAGATCAAGATTAAG : GCAACAGGTGGTGGAGCTTTCAAGTTTGCCGATCTATTCAAAGAAAAACTTGGCCTAACTCTGGACAAGGTAGAGGAAATGGAGTCTCTTGTTACCGGAGCAAATTTTCTGCTTAAG : GCTGCCAATCATGAAGTTTATACATATATTGGAGGTCAAAAGGAGTATGTGCAGATAGATCAGAATGATTTATATCCCTACCTCCTTGTCAACATTGGGTCTGGGGTTAGCATGATAAAG : GTAGATGGAGATGGGAAATTTCAGAGAGTTAGTGGAACTAGCGTCGGTGGTGGCACTTTCTTGGGACTAGGGAAACTTTTGACTAAATGCCAAAG : TTTTGATGAGTTGCTGGAACTGAGCCATCTGGGAAATAACAGAGTGATAGACATGCTCGTTGGAGATATTTACGGGGGATTGGACTATTCAAAG : ATTGGCCTTGCATCAACAGCCATAGCGTCTAGCTTCGGTAAGGCGATCTCAGAAAACAAAGAGCTCGAAGACTACAAACCAGAAGACATTGCCCGGTCCCTCTTAAGGATGATCTCAAATAACATCGGACAG : ATTGCATACTTGAATGCTCTTCGTTTTGGGCTCAAGCGGATCTTTTTGGGAGGATTCTTCATCCGCGACCATGCTTATACAATGGACACAATCTCCGTTGCAGTTGATTTCTG : GTCGAAGGGTGAGGCCAAAGCAATGTTCTTGCGGCATGAGGGATTTCTTGGAGCCCTAGGAGCTTTCATGAACTACAAAGATGGAAGTACAGATTCCATGCCCCCTCAGTTAGTTGAGCAACAAG</gDNA_template>
            <first_frame> T  Q  *  L  F  F  E  Q  N  S  I  Y  S  S  P  I  V  I  L  F  I  H  D  S  *  K  I  L  F  F  H  L  I  E  C  S  I  *  R  R  S  G  G  G  S  D  M  E  V  K  G  I  D  G  K  L  E  K  S  D  S  T  S  A  D  E  I  S  H  L  S  I  D  I  G   : G  S  L  I  K  I  V  Y  F  S  T  N  S  K  C  S  T  N  D  E  A  P  T  L  S  K  E  R  Q  E  V  P  N  G  D  L  N  H  H  I  L  S  G  R  L  Y  F  I  K  F  E  T  S  K  I  E  D  C  I  K  F  L  S  S  K  K  L  Q  K  C   : G  A  Q  C  H  H  S  H  A  V  D  K  I  K  I  K  :  A  T  G  G  G  A  F  K  F  A  D  L  F  K  E  K  L  G  L  T  L  D  K  V  E  E  M  E  S  L  V  T  G  A  N  F  L  L  K  :  A  A  N  H  E  V  Y  T  Y  I  G  G  Q  K  E  Y  V  Q  I  D  Q  N  D  L  Y  P  Y  L  L  V  N  I  G  S  G  V  S  M  I  K  :  V  D  G  D  G  K  F  Q  R  V  S  G  T  S  V  G  G  G  T  F  L  G  L  G  K  L  L  T  K  C  Q  S :   F  D  E  L  L  E  L  S  H  L  G  N  N  R  V  I  D  M  L  V  G  D  I  Y  G  G  L  D  Y  S  K  :  I  G  L  A  S  T  A  I  A  S  S  F  G  K  A  I  S  E  N  K  E  L  E  D  Y  K  P  E  D  I  A  R  S  L  L  R  M  I  S  N  N  I  G  Q  :  I  A  Y  L  N  A  L  R  F  G  L  K  R  I  F  L  G  G  F  F  I  R  D  H  A  Y  T  M  D  T  I  S  V  A  V  D  F  W :   S  K  G  E  A  K  A  M  F  L  R  H  E  G  F  L  G  A  L  G  A  F  M  N  Y  K  D  G  S  T  D  S  M  P  P  Q  L  V  E  Q  Q  </first_frame>
            <second_frame>  L  S  S  S  F  L  N  K  I  L  Y  I  L  R  R  S  *  F  C  L  F  M  T  V  R  K  F  Y  F  S  T  *  L  S  V  Q  F  E  E  E  V  E  E  D  P  I  W  R  *  R  E  L  M  G  N  *  K  R  V  I  P  L  L  L  M  K  F  H  I  C  L  S  T  L  E  :  A  P  S  S  R  L  Y  T  F  Q  P  T  V  S  A  A  Q  M  M  R  H  Q  R  Y  Q  K  K  D  R  K  F  P  M  E  T  L  T  I  T  F  S  V  A  G  F  I  S  L  N  S  R  L  A  R  L  R  T  A  *  S  F  C  L  P  R  N  F  K  N  A  :  V  L  N  V  I  I  L  T  L  L  T  R  S  R  L  R :   Q  Q  V  V  E  L  S  S  L  P  I  Y  S  K  K  N  L  A  *  L  W  T  R  *  R  K  W  S  L  L  L  P  E  Q  I  F  C  L  R :   L  P  I  M  K  F  I  H  I  L  E  V  K  R  S  M  C  R  *  I  R  M  I  Y  I  P  T  S  L  S  T  L  G  L  G  L  A  *  *  R :   *  M  E  M  G  N  F  R  E  L  V  E  L  A  S  V  V  A  L  S  W  D  *  G  N  F  *  L  N  A  K   : V  L  M  S  C  W  N  *  A  I  W  E  I  T  E  *  *  T  C  S  L  E  I  F  T  G  D  W  T  I  Q  R :   L  A  L  H  Q  Q  P  *  R  L  A  S  V  R  R  S  Q  K  T  K  S  S  K  T  T  N  Q  K  T  L  P  G  P  S  *  G  *  S  Q  I  T  S  D  R :   L  H  T  *  M  L  F  V  L  G  S  S  G  S  F  W  E  D  S  S  S  A  T  M  L  I  Q  W  T  Q  S  P  L  Q  L  I  S   : G  R  R  V  R  P  K  Q  C  S  C  G  M  R  D  F  L  E  P  *  E  L  S  *  T  T  K  M  E  V  Q  I  P  C  P  L  S  *  L  S  N  K </second_frame>
            <third_frame>   S  V  A  L  F  *  T  K  F  Y  I  F  F  A  D  R  D  F  V  Y  S  *  Q  L  E  N  S  I  F  P  L  N  *  V  F  N  L  K  K  K  W  R  R  I  R  Y  G  G  E  G  N  *  W  E  I  R  K  E  *  F  H  F  C  *  *  N  F  T  F  V  Y  R  H  W  R :   L  P  H  Q  D  C  I  L  F  N  Q  Q  *  V  Q  H  K  *  *  G  T  N  V  I  K  R  K  T  G  S  S  Q  W  R  P  *  P  S  H  S  Q  W  Q  A  L  F  H  *  I  R  D  *  Q  D  *  G  L  H  K  V  F  V  F  Q  E  T  S  K  M  R :   C  S  M  S  S  F  S  R  C  *  Q  D  Q  D  *   : G  N  R  W  W  S  F  Q  V  C  R  S  I  Q  R  K  T  W  P  N  S  G  Q  G  R  G  N  G  V  S  C  Y  R  S  K  F  S  A  *   : G  C  Q  S  *  S  L  Y  I  Y  W  R  S  K  G  V  C  A  D  R  S  E  *  F  I  S  L  P  P  C  Q  H  W  V  W  G  *  H  D  K   : G  R  W  R  W  E  I  S  E  S  *  W  N  *  R  R  W  W  H  F  L  G  T  R  E  T  F  D  *  M  P  K  :  F  *  *  V  A  G  T  E  P  S  G  K  *  Q  S  D  R  H  A  R  W  R  Y  L  R  G  I  G  L  F  K   : D  W  P  C  I  N  S  H  S  V  *  L  R  *  G  D  L  R  K  Q  R  A  R  R  L  Q  T  R  R  H  C  P  V  P  L  K  D  D  L  K  *  H  R  T   : D  C  I  L  E  C  S  S  F  W  A  Q  A  D  L  F  G  R  I  L  H  P  R  P  C  L  Y  N  G  H  N  L  R  C  S  *  F  L  :  V  E  G  *  G  Q  S  N  V  L  A  A  *  G  I  S  W  S  P  R  S  F  H  E  L  Q  R  W  K  Y  R  F  H  A  P  S  V  S  *  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62544" stop="62433"/>
                    <exon start="61038" stop="60829"/>
                    <exon start="59761" stop="59715"/>
                    <exon start="58750" stop="58634"/>
                    <exon start="57936" stop="57817"/>
                    <exon start="57252" stop="57158"/>
                    <exon start="57066" stop="56973"/>
                    <exon start="55777" stop="55646"/>
                    <exon start="54904" stop="54792"/>
                    <exon start="54356" stop="54233"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRSGGGSDMEVKGIDGKLEKSDSTSADEISHLSIDIGGSLIKIVYFSTNSKCSTNDEAPTLSKERQEVPNGDLNHHILSGRLYFIKFETSKIEDCIKFLSSKKLQKCGAQCHHSHAVDKIKIKATGGGAFKFADLFKEKLGLTLDKVEEMESLVTGANFLLKAANHEVYTYIGGQKEYVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFQRVSGTSVGGGTFLGLGKLLTKCQSFDELLELSHLGNNRVIDMLVGDIYGGLDYSKIGLASTAIASSFGKAISENKELEDYKPEDIARSLLRMISNNIGQIAYLNALRFGLKRIFLGGFFIRDHAYTMDTISVAVDFWSKGEAKAMFLRHEGFLGALGAFMNYKDGSTDSMPPQLVEQQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="93164" PGL_stop="91252"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93164" e_stop="92694"/>
            <exon e_start="91894" e_stop="91772"/>
            <exon e_start="91350" e_stop="91252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.909"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="93164" e_stop="92694" e_length="471"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="92693" i_stop="91895" i_length="799"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91894" e_stop="91772" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="91771" i_stop="91351" i_length="421"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="91350" e_stop="91252" e_length="99"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93164" stop="92694"/>
              <exon start="91894" stop="91808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6911-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93010" stop="92694"/>
              <exon start="91894" stop="91772"/>
              <exon start="91350" stop="91252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6911" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATACACATATGATTTCTAGCATCTTTTTGGCTCCATAAGTCCCAATGTCAAAACCTCATAATATGGCATCCATCTTATCTCATCTTATCCAAATAAATCAAAAACACACACATCAAGATATCACATATTATTGTCACTCCATAACACAAACACAAAATTACTCTCTTTGAAAAATAACAACATTTTTTCAAATTACCAAGAATGATAGAGGAGGATCTTAACACTATGAGGAGAAGAGTGGCATCAGTTGCAAATCATTTATTGCCAATCCCTTTAGCTCAAAATGTTTTTTCTTCAATTGGCTTTTCCAATTGTAGCTCTTCTTCTATGAATGATAATTACCATAAAATTCATGGTGAAGTCCCAAATCATGAACCTGTTTGGAGACTTATTCCTTCTGATGATGAATCTGGCAAGGACTTCACTGATATCATATATGAGAAAGCTGTTGGTGAACCCATTGCTAAG : ATAACCATCAATAGACCGGATAGAAGAAATGCTTTCCGACCTCACACCATCAAGGAGCTTATCCGCGCATTTAATGATGCCAGGGATGATGGTTCAGTGGGAGTCATCATCCTCACAGGGAAG : GGTACAAAGGCGTTTTGTAGTGGTGGTGATCAGGCATTGAGAAGTAAGGATGGTTATGCTGATTTTGAAAGTTTTGGTCGCCTTAATGTTTTAGATTTA</gDNA_template>
            <first_frame> *  I  H  I  *  F  L  A  S  F  W  L  H  K  S  Q  C  Q  N  L  I  I  W  H  P  S  Y  L  I  L  S  K  *  I  K  N  T  H  I  K  I  S  H  I  I  V  T  P  *  H  K  H  K  I  T  L  F  E  K  *  Q  H  F  F  K  L  P  R  M  I  E  E  D  L  N  T  M  R  R  R  V  A  S  V  A  N  H  L  L  P  I  P  L  A  Q  N  V  F  S  S  I  G  F  S  N  C  S  S  S  S  M  N  D  N  Y  H  K  I  H  G  E  V  P  N  H  E  P  V  W  R  L  I  P  S  D  D  E  S  G  K  D  F  T  D  I  I  Y  E  K  A  V  G  E  P  I  A  K  :  I  T  I  N  R  P  D  R  R  N  A  F  R  P  H  T  I  K  E  L  I  R  A  F  N  D  A  R  D  D  G  S  V  G  V  I  I  L  T  G  K  :  G  T  K  A  F  C  S  G  G  D  Q  A  L  R  S  K  D  G  Y  A  D  F  E  S  F  G  R  L  N  V  L  D  L </first_frame>
            <second_frame>  K  Y  T  Y  D  F  *  H  L  F  G  S  I  S  P  N  V  K  T  S  *  Y  G  I  H  L  I  S  S  Y  P  N  K  S  K  T  H  T  S  R  Y  H  I  L  L  S  L  H  N  T  N  T  K  L  L  S  L  K  N  N  N  I  F  S  N  Y  Q  E  *  *  R  R  I  L  T  L  *  G  E  E  W  H  Q  L  Q  I  I  Y  C  Q  S  L  *  L  K  M  F  F  L  Q  L  A  F  P  I  V  A  L  L  L  *  M  I  I  T  I  K  F  M  V  K  S  Q  I  M  N  L  F  G  D  L  F  L  L  M  M  N  L  A  R  T  S  L  I  S  Y  M  R  K  L  L  V  N  P  L  L  R :   *  P  S  I  D  R  I  E  E  M  L  S  D  L  T  P  S  R  S  L  S  A  H  L  M  M  P  G  M  M  V  Q  W  E  S  S  S  S  Q  G  R :   V  Q  R  R  F  V  V  V  V  I  R  H  *  E  V  R  M  V  M  L  I  L  K  V  L  V  A  L  M  F  *  I   </second_frame>
            <third_frame>   N  T  H  M  I  S  S  I  F  L  A  P  *  V  P  M  S  K  P  H  N  M  A  S  I  L  S  H  L  I  Q  I  N  Q  K  H  T  H  Q  D  I  T  Y  Y  C  H  S  I  T  Q  T  Q  N  Y  S  L  *  K  I  T  T  F  F  Q  I  T  K  N  D  R  G  G  S  *  H  Y  E  E  K  S  G  I  S  C  K  S  F  I  A  N  P  F  S  S  K  C  F  F  F  N  W  L  F  Q  L  *  L  F  F  Y  E  *  *  L  P  *  N  S  W  *  S  P  K  S  *  T  C  L  E  T  Y  S  F  *  *  *  I  W  Q  G  L  H  *  Y  H  I  *  E  S  C  W  *  T  H  C  *   : D  N  H  Q  *  T  G  *  K  K  C  F  P  T  S  H  H  Q  G  A  Y  P  R  I  *  *  C  Q  G  *  W  F  S  G  S  H  H  P  H  R  E   : G  Y  K  G  V  L  *  W  W  *  S  G  I  E  K  *  G  W  L  C  *  F  *  K  F  W  S  P  *  C  F  R  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0005B15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92984" stop="92694"/>
                    <exon start="91894" stop="91772"/>
                    <exon start="91350" stop="91252"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHFFKLPRMIEEDLNTMRRRVASVANHLLPIPLAQNVFSSIGFSNCSSSSMNDNYHKIHGEVPNHEPVWRLIPSDDESGKDFTDIIYEKAVGEPIAKITINRPDRRNAFRPHTIKELIRAFNDARDDGSVGVIILTGKGTKAFCSGGDQALRSKDGYADFESFGRLNVLDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 50 chains have been computed
$ 
$ memory statistics:
$ 11912 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2382 bytes was the average size of a spliced alignment
$ 8264 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2754 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 51 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 03:06:22
-->
