<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:38:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423063" ref_strand="+" ref_description="SGN-E423063 [STM-41-O10]">
      <seq>ctaaatttcattatttctttaacacaatgccaatatcaataattgatcatcaatattcaacattcaaaaatccaaaaaacaaaactcattctacccctaatcatcaattttccaacacaaatgactcaaatgtatctaaaaacaagaagaaatttatgtctatgagctttggagggctaggatgtaagggaaaattaaacttaccggttgcgtcgacgccggaggttattagatcagcagcacaatgggagagtagtagtaagcaaatgaggaataatagaagaaaaaagatgacaacattgtcaacaagtactaggaattcaactaatgttgtttgctgtgctcctcctggtattggttctgcttttgatgttgctcctaggccaaaaataagatcaaataacaaagagaactctcgtatcgcgaggagaacatctacgaatggtgaagcaatttctaggtctcatacgtctaatacaagacatcattgccctcgttttcatcatcgtcctcatattatgatcctcagacacaacttgcaatacgcaagagatatagaaggggatgatcaatatggatcttggagactagatgtagatgatatgtcttatgagcaattggttgaactaagtgataaaattgggtatgtgggaacaggtttagaagaagagaaatagttgaatatataagaaagtttaagctctcacaattgactcatattcaatgctaatatctactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1270" stop="4192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1570" g_stop="1971" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1972" i_stop="3387" i_length="1416">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3388" g_stop="3489" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="515" r_length="105" r_score="0.892"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3490" i_stop="3576" i_length="87">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3577" g_stop="3675" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="614" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3676" i_stop="3764" i_length="89">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3765" g_stop="3893" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="741" r_length="127" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E423063" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1570" e_stop="1971"/>
          <exon e_start="3388" e_stop="3489"/>
          <exon e_start="3577" e_stop="3675"/>
          <exon e_start="3765" e_stop="3893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTTCATTATTTCTTTTAACACAATGCCAATATCAACAATTGAACATCAATATTCAAGATTCAAAAATCCAAAAAACAACACTCATTCTACCCCTAATCATCAATTTTCCAACACAAATG---------TATCAAAAAACAAGAAAAAATTTATGTCTATGAGCTTTAGAGGGCTAGGATGTAAGGGAAAATTAAACTCACCGGACGCGTCGACACCGGAAGTTATTAGATCAGCAGCACAATGGGAGAGTAGTAGTAAGCAAATGAGGAAAAATAGAAGAAAAAAGATGACAACATTGTCAACAAGTACTAGGAATTCAACTAATGTTGTTTGTTGTGCTCCTCCTGGTATTGGTTCTGCTTATGATGTTGCTCCTAGGCCAAAAACAAGATCAAATAATAGAGAGGTAAATGGCAATTTATATTGGATTTAAGTTATGTATACTGATCAGTGTGATTTTACTTTTTTCGTTTCAAAATAAGTGTCGCTAACAATGAATATGAGGTATAGTTTAGTAAGTTACAACTATTTATTAGTAGGTGTTTTTTGAGAATTGTTTTGCTTTTGATGTTGCTCCTAGGCAAAAATCAAGATCAAATAATAGAGAGGTAATGGTCTTTTGCGATGGATTTAAGTTATAGATACTAATTAGTGTAACGTATGTTCTTCATTTCAAAATAAGTGTCGCTTTAGTTCGTTTCAGGACTATTAAGTTAGAAAAACAATAAATATTAGGTATTAGTTTTTTGATGGTTTTTTGAGAATTGTTCTGCTTTTGTTGTTGCTCCTAAGCCACAAACAAGATCAAATAATAGAGAGGTAATGGCCTTTTATGATGGATTTAAATTATATATACTATTAGTGTAATGTACTTTTTTCGTTTTAAAATAAGTATCGTTTTTGTTCGTTTCAAGACCATTAAGAAAAACAACAAATAGAAGGTATAGTTGGGTGAGTTACAACTATTTATTAGATGTTTCTTGAGAATTGAACAGTGTTAGGAAGTTTTTTAATACAAGGGTATAGTAGAAAACGATTATTATTTTTGTCTCGAATATTAAAGAACACTTATTTTGGGACAATTTTTTTTTTTTGCTTTACACTTATTTTGAGGCAGAAGGAGATGGGGTTCAAATTCGTTGAAAAAGGGGAGAGACCCCGTTAAGCCCAGACCTTATCGGTTGCCTATGAGTCGAGTAATTTGAGAATGTAGCCCAATCAGGCAGTGAATTCCGTCTAAGGCTAAAATCGAGCGAGAGAGATCAATAGTGGGAAAATGTTCACTTATTTAATAGTAATAGAGTTATTTCTAGTTACCTTTTAAACGGCTTGATTGTGTAAGAATTTTTATTCACATCGTCAGTACATAGAACTTAACTTCATTTGTTTTACATATTGTAAATTGTGATTTGTTTAGACAAATAGAACCCTATTAAAAAGAGTGAGATTGTTGTCATTTGTCTCCCCTGATATTTCTGGTCAAAGAAATATCATAAGTCACAACCAGAGTATGGTTCAAAATTTGAACTTTATCAATTCGAATTCGAAATTCTACCGGATCCCATTTGATTTATTGGATTCGAAATCGACTATTTGTATTTATTTGGTGAATTTTTTAACGCGTATATAAGGTATGATCATGAACTTGTAACATATACATTATATCCAGATCCTTTAAAAATACATTACTTTTAGATAATCTGATGACATTTTTGAAGACTCCGAACAACGTTACATCTAGTAAGACCATGTTACAATGTCACAATTCACTAATAGAATCTTACTAAATTGTGTATTGTTTTGGATTAATGCAATCGAATAGCACCCTCGTATCGCGAGGAGAGCA---ACGAATGGCGAAGCAATTTCTAGGTCTCATACGTCTAATACAAGACATCATTGCCCTCGTTCTCATCATCGTCCTCATGTAAGTTAAAAAAACTTATCCGCACCTGATGTTTGCTCCAGTCCTGTCGTTATTTACTATCTTGAGCATTTTTCGTTATTGTTGTAGATTATGATCCTCAGACACAATTTGCAATATGCTAGAGATGTAGAAGGGGATGATCAATATGGATCTTGGAGACTAGATGTAGATGATATGTCATATGAGGTTCGTCTTTTAAATATACTGATAGTGTAAAAATTATTTACGTTGACGATATATAAGTTGATTTCTCTTTACAATATCTTTTTTTGCAGCAATTGGTTGAACTAAGTGATAAGATTGGGTATGTGGGAACAGGTTTAGAAGAAGAGAAGATAGTTGAATATATAAGAAAGTTTTAGCTCTCAACAATTGACTCATATTCAATGCTAATATCTACTGAA</genome_strand>
        <mrna_strand>CTAAATTTCATTATTTC-TTTAACACAATGCCAATATCAATAATTGATCATCAATATTCAACATTCAAAAATCCAAAAAACAAAACTCATTCTACCCCTAATCATCAATTTTCCAACACAAATGACTCAAATGTATCTAAAAACAAGAAGAAATTTATGTCTATGAGCTTTGGAGGGCTAGGATGTAAGGGAAAATTAAACTTACCGGTTGCGTCGACGCCGGAGGTTATTAGATCAGCAGCACAATGGGAGAGTAGTAGTAAGCAAATGAGGAATAATAGAAGAAAAAAGATGACAACATTGTCAACAAGTACTAGGAATTCAACTAATGTTGTTTGCTGTGCTCCTCCTGGTATTGGTTCTGCTTTTGATGTTGCTCCTAGGCCAAAAATAAGATCAAATAACAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCGTATCGCGAGGAGAACATCTACGAATGGTGAAGCAATTTCTAGGTCTCATACGTCTAATACAAGACATCATTGCCCTCGTTTTCATCATCGTCCTCAT.......................................................................................ATTATGATCCTCAGACACAACTTGCAATACGCAAGAGATATAGAAGGGGATGATCAATATGGATCTTGGAGACTAGATGTAGATGATATGTCTTATGAG.........................................................................................CAATTGGTTGAACTAAGTGATAAAATTGGGTATGTGGGAACAGGTTTAGAAGAAGAGAA-ATAGTTGAATATATAAGAAAGTTTAAGCTCTC-ACAATTGACTCATATTCAATGCTAATATCTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557621" ref_strand="+" ref_description="SGN-E557621 [16450]">
      <seq>caaatttcattttctttaacacaatgccaatatcaacaattgatcatcaatattcaagattcaaaaatccaaaaaacaaaactcattctacccctaatcatcaattttccaacacaaatgactcaaatgtatctaaaaacaagaagaaatttatgtctatgggctttggagggctaggatgtaagggaaaattaaactcaccggccgcattgacgccggaagttattagatcagcagcacaatgggagagtagtagtaagcaaatgaggaaaaacagaaggaaaaagatgacaacattgacaacaagtactaggaattcaactaatgttgtttgttgtgctcctcctggtattggttctgcttttgatgttgctcctaggccaaaaacaagatcaaataacaaagagcactctcgtatcgcgaggagaactacgaatggtgaagcaatttctaggtctcatacgtctaatacaagacatcattgccctcngttctcatcatcgtcctcatattatgatcctcagacacaacttgcaatatgatagagatatagaaggcgatgatcactatggatcttggagactagatgtagatgatatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1272" stop="3968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1571" g_stop="1971" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1972" i_stop="3387" i_length="1416">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3388" g_stop="3489" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="510" r_length="103" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3490" i_stop="3576" i_length="87">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3577" g_stop="3668" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="602" r_length="92" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E557621" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1571" e_stop="1971"/>
          <exon e_start="3388" e_stop="3489"/>
          <exon e_start="3577" e_stop="3668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTTCATTATTTCTTTTAACACAATGCCAATATCAACAATTGAACATCAATATTCAAGATTCAAAAATCCAAAAAACAACACTCATTCTACCCCTAATCATCAATTTTCCAACACAAATG---------TATCAAAAAACAAGAAAAAATTTATGTCTATGAGCTTTAGAGGGCTAGGATGTAAGGGAAAATTAAACTCACCGGACGCGTCGACACCGGAAGTTATTAGATCAGCAGCACAATGGGAGAGTAGTAGTAAGCAAATGAGGAAAAATAGAAGAAAAAAGATGACAACATTGTCAACAAGTACTAGGAATTCAACTAATGTTGTTTGTTGTGCTCCTCCTGGTATTGGTTCTGCTTATGATGTTGCTCCTAGGCCAAAAACAAGATCAAATAATAGAGAGGTAAATGGCAATTTATATTGGATTTAAGTTATGTATACTGATCAGTGTGATTTTACTTTTTTCGTTTCAAAATAAGTGTCGCTAACAATGAATATGAGGTATAGTTTAGTAAGTTACAACTATTTATTAGTAGGTGTTTTTTGAGAATTGTTTTGCTTTTGATGTTGCTCCTAGGCAAAAATCAAGATCAAATAATAGAGAGGTAATGGTCTTTTGCGATGGATTTAAGTTATAGATACTAATTAGTGTAACGTATGTTCTTCATTTCAAAATAAGTGTCGCTTTAGTTCGTTTCAGGACTATTAAGTTAGAAAAACAATAAATATTAGGTATTAGTTTTTTGATGGTTTTTTGAGAATTGTTCTGCTTTTGTTGTTGCTCCTAAGCCACAAACAAGATCAAATAATAGAGAGGTAATGGCCTTTTATGATGGATTTAAATTATATATACTATTAGTGTAATGTACTTTTTTCGTTTTAAAATAAGTATCGTTTTTGTTCGTTTCAAGACCATTAAGAAAAACAACAAATAGAAGGTATAGTTGGGTGAGTTACAACTATTTATTAGATGTTTCTTGAGAATTGAACAGTGTTAGGAAGTTTTTTAATACAAGGGTATAGTAGAAAACGATTATTATTTTTGTCTCGAATATTAAAGAACACTTATTTTGGGACAATTTTTTTTTTTTGCTTTACACTTATTTTGAGGCAGAAGGAGATGGGGTTCAAATTCGTTGAAAAAGGGGAGAGACCCCGTTAAGCCCAGACCTTATCGGTTGCCTATGAGTCGAGTAATTTGAGAATGTAGCCCAATCAGGCAGTGAATTCCGTCTAAGGCTAAAATCGAGCGAGAGAGATCAATAGTGGGAAAATGTTCACTTATTTAATAGTAATAGAGTTATTTCTAGTTACCTTTTAAACGGCTTGATTGTGTAAGAATTTTTATTCACATCGTCAGTACATAGAACTTAACTTCATTTGTTTTACATATTGTAAATTGTGATTTGTTTAGACAAATAGAACCCTATTAAAAAGAGTGAGATTGTTGTCATTTGTCTCCCCTGATATTTCTGGTCAAAGAAATATCATAAGTCACAACCAGAGTATGGTTCAAAATTTGAACTTTATCAATTCGAATTCGAAATTCTACCGGATCCCATTTGATTTATTGGATTCGAAATCGACTATTTGTATTTATTTGGTGAATTTTTTAACGCGTATATAAGGTATGATCATGAACTTGTAACATATACATTATATCCAGATCCTTTAAAAATACATTACTTTTAGATAATCTGATGACATTTTTGAAGACTCCGAACAACGTTACATCTAGTAAGACCATGTTACAATGTCACAATTCACTAATAGAATCTTACTAAATTGTGTATTGTTTTGGATTAATGCAATCGAATAGCACCCTCGTATCGCGAGGAGAGCAACGAATGGCGAAGCAATTTCTAGGTCTCATACGTCTAATACAAGACATCATTGCCCTC-GTTCTCATCATCGTCCTCATGTAAGTTAAAAAAACTTATCCGCACCTGATGTTTGCTCCAGTCCTGTCGTTATTTACTATCTTGAGCATTTTTCGTTATTGTTGTAGATTATGATCCTCAGACACAATTTGCAATATGCTAGAGATGTAGAAGGGGATGATCAATATGGATCTTGGAGACTAGATGTAGATGATATGTC</genome_strand>
        <mrna_strand>CAAATTTCA-T-TTTCT-TTAACACAATGCCAATATCAACAATTGATCATCAATATTCAAGATTCAAAAATCCAAAAAACAAAACTCATTCTACCCCTAATCATCAATTTTCCAACACAAATGACTCAAATGTATCTAAAAACAAGAAGAAATTTATGTCTATGGGCTTTGGAGGGCTAGGATGTAAGGGAAAATTAAACTCACCGGCCGCATTGACGCCGGAAGTTATTAGATCAGCAGCACAATGGGAGAGTAGTAGTAAGCAAATGAGGAAAAACAGAAGGAAAAAGATGACAACATTGACAACAAGTACTAGGAATTCAACTAATGTTGTTTGTTGTGCTCCTCCTGGTATTGGTTCTGCTTTTGATGTTGCTCCTAGGCCAAAAACAAGATCAAATAACAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTCGTATCGCGAGGAGAACTACGAATGGTGAAGCAATTTCTAGGTCTCATACGTCTAATACAAGACATCATTGCCCTCNGTTCTCATCATCGTCCTCAT.......................................................................................ATTATGATCCTCAGACACAACTTGCAATATGATAGAGATATAGAAGGCGATGATCACTATGGATCTTGGAGACTAGATGTAGATGATATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449652" ref_strand="+" ref_description="SGN-E449652 [cSTS-7-K1]">
      <seq>ttctacccctaaatcatcaattttccaaccacaaatgactcaaatgtatctaaaaacaagaaagaaatttatgtctatgagctttggagggctaggatgtaagggaaaattaaacttaccggttgcgtcgacgccggaggttattagatcagcagcacaatgggagaagtagtagtaagcaaatgaggaataatagaagaaaaaagatgacaacattgtcaacaagtactaggaattcaactaatgttgtttgctgtgctcctcctggtattggttctgcttttgatgttgctcctaggccaaaaataagatcaaataacaaagagaactctcgtatcgcgaggagaacatctacgaatggtgaagcaatttctaggtctcatacgtctaatacaagacatcattgccctcgttttcatcatcgtcctcatattatgatcctcagacacaacttgcaatacgcaagagatatagaaggggatgatcaatatggatcttggagactagatgtagatgatatgtcttatgagcaattggttgaactaagtgataaaaattggtatgtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1359" stop="4103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1689" g_stop="1971" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="326" r_length="285" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1972" i_stop="3387" i_length="1416">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3388" g_stop="3489" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="431" r_length="105" r_score="0.892"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3490" i_stop="3576" i_length="87">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3577" g_stop="3675" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="530" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3676" i_stop="3764" i_length="89">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3765" g_stop="3803" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="569" r_length="39" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E449652" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1689" e_stop="1971"/>
          <exon e_start="3388" e_stop="3489"/>
          <exon e_start="3577" e_stop="3675"/>
          <exon e_start="3765" e_stop="3803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTATCAAAAAACAAGAAA-AAATTTATGTCTATGAGCTTTAGAGGGCTAGGATGTAAGGGAAAATTAAACTCACCGGACGCGTCGACACCGGAAGTTATTAGATCAGCAGCACAATGGGAG-AGTAGTAGTAAGCAAATGAGGAAAAATAGAAGAAAAAAGATGACAACATTGTCAACAAGTACTAGGAATTCAACTAATGTTGTTTGTTGTGCTCCTCCTGGTATTGGTTCTGCTTATGATGTTGCTCCTAGGCCAAAAACAAGATCAAATAATAGAGAGGTAAATGGCAATTTATATTGGATTTAAGTTATGTATACTGATCAGTGTGATTTTACTTTTTTCGTTTCAAAATAAGTGTCGCTAACAATGAATATGAGGTATAGTTTAGTAAGTTACAACTATTTATTAGTAGGTGTTTTTTGAGAATTGTTTTGCTTTTGATGTTGCTCCTAGGCAAAAATCAAGATCAAATAATAGAGAGGTAATGGTCTTTTGCGATGGATTTAAGTTATAGATACTAATTAGTGTAACGTATGTTCTTCATTTCAAAATAAGTGTCGCTTTAGTTCGTTTCAGGACTATTAAGTTAGAAAAACAATAAATATTAGGTATTAGTTTTTTGATGGTTTTTTGAGAATTGTTCTGCTTTTGTTGTTGCTCCTAAGCCACAAACAAGATCAAATAATAGAGAGGTAATGGCCTTTTATGATGGATTTAAATTATATATACTATTAGTGTAATGTACTTTTTTCGTTTTAAAATAAGTATCGTTTTTGTTCGTTTCAAGACCATTAAGAAAAACAACAAATAGAAGGTATAGTTGGGTGAGTTACAACTATTTATTAGATGTTTCTTGAGAATTGAACAGTGTTAGGAAGTTTTTTAATACAAGGGTATAGTAGAAAACGATTATTATTTTTGTCTCGAATATTAAAGAACACTTATTTTGGGACAATTTTTTTTTTTTGCTTTACACTTATTTTGAGGCAGAAGGAGATGGGGTTCAAATTCGTTGAAAAAGGGGAGAGACCCCGTTAAGCCCAGACCTTATCGGTTGCCTATGAGTCGAGTAATTTGAGAATGTAGCCCAATCAGGCAGTGAATTCCGTCTAAGGCTAAAATCGAGCGAGAGAGATCAATAGTGGGAAAATGTTCACTTATTTAATAGTAATAGAGTTATTTCTAGTTACCTTTTAAACGGCTTGATTGTGTAAGAATTTTTATTCACATCGTCAGTACATAGAACTTAACTTCATTTGTTTTACATATTGTAAATTGTGATTTGTTTAGACAAATAGAACCCTATTAAAAAGAGTGAGATTGTTGTCATTTGTCTCCCCTGATATTTCTGGTCAAAGAAATATCATAAGTCACAACCAGAGTATGGTTCAAAATTTGAACTTTATCAATTCGAATTCGAAATTCTACCGGATCCCATTTGATTTATTGGATTCGAAATCGACTATTTGTATTTATTTGGTGAATTTTTTAACGCGTATATAAGGTATGATCATGAACTTGTAACATATACATTATATCCAGATCCTTTAAAAATACATTACTTTTAGATAATCTGATGACATTTTTGAAGACTCCGAACAACGTTACATCTAGTAAGACCATGTTACAATGTCACAATTCACTAATAGAATCTTACTAAATTGTGTATTGTTTTGGATTAATGCAATCGAATAGCACCCTCGTATCGCGAGGAGAGCA---ACGAATGGCGAAGCAATTTCTAGGTCTCATACGTCTAATACAAGACATCATTGCCCTCGTTCTCATCATCGTCCTCATGTAAGTTAAAAAAACTTATCCGCACCTGATGTTTGCTCCAGTCCTGTCGTTATTTACTATCTTGAGCATTTTTCGTTATTGTTGTAGATTATGATCCTCAGACACAATTTGCAATATGCTAGAGATGTAGAAGGGGATGATCAATATGGATCTTGGAGACTAGATGTAGATGATATGTCATATGAGGTTCGTCTTTTAAATATACTGATAGTGTAAAAATTATTTACGTTGACGATATATAAGTTGATTTCTCTTTACAATATCTTTTTTTGCAGCAATTGGTTGAACTAAGTGATAAGATTGGGTATGTGGGA</genome_strand>
        <mrna_strand>AAATGTATCTAAAAACAAGAAAGAAATTTATGTCTATGAGCTTTGGAGGGCTAGGATGTAAGGGAAAATTAAACTTACCGGTTGCGTCGACGCCGGAGGTTATTAGATCAGCAGCACAATGGGAGAAGTAGTAGTAAGCAAATGAGGAATAATAGAAGAAAAAAGATGACAACATTGTCAACAAGTACTAGGAATTCAACTAATGTTGTTTGCTGTGCTCCTCCTGGTATTGGTTCTGCTTTTGATGTTGCTCCTAGGCCAAAAATAAGATCAAATAACAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCGTATCGCGAGGAGAACATCTACGAATGGTGAAGCAATTTCTAGGTCTCATACGTCTAATACAAGACATCATTGCCCTCGTTTTCATCATCGTCCTCAT.......................................................................................ATTATGATCCTCAGACACAACTTGCAATACGCAAGAGATATAGAAGGGGATGATCAATATGGATCTTGGAGACTAGATGTAGATGATATGTCTTATGAG.........................................................................................CAATTGGTTGAACTAAGTGATAAAAATTGGTATGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423064" ref_strand="-" ref_description="SGN-E423064 [STM-41-O10]">
      <seq>caattggttgaactaagtgataaaattgggtatgtgggaacaggtttagaagaagagaagatagttgaatatataagaaagtttaagctctcaacaattgactcatattcaatgctaatatctactgataaaagttggagatgtaccatttgccaagaaggatacaaagttgatgaaattggaaaactagaatgtggacactaccatcacattgagtgcataaagaaatggctaatgcataaaaatgtatgtcctatttgcaaaatttcagcaatccatgaaaattaattcttgacaaaaatttctttcacttttctctatttatattatatagtcaagaacattaaatttcagaggcataaattgattcttggtttaaacttttcctatttttggtttgttaggagtgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="3465" stop="5055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3765" g_stop="3920" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3921" i_stop="4501" i_length="581">
            <donor d_prob="0.943" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4502" g_stop="4747" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="395" r_length="239" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E423064" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423064" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3765" e_stop="3920"/>
          <exon e_start="4502" e_stop="4747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGGTTGAACTAAGTGATAAGATTGGGTATGTGGGAACAGGTTTAGAAGAAGAGAAGATAGTTGAATATATAAGAAAGTTTTAGCTCTCAACAATTGACTCATATTCAATGCTAATATCTACTGAAAAAAGTTGGAAATGTACCATTTGCCAAGTGAGTTCACTACTACACTTCTATTTATTTATTTTTCATGTTTTATTGGAGAGATAAAGAGTTGACGTCACGTGACTAGGAGGTCAAGGTATGTGTGTGTTCGAGTTGAGGAAATAGTCTCTTGCACGTATACAAAGTAAGGTTGCATAAATTAGTCCTGACATATATAGTCTGGCCTTTCTTGGAATCTCGTACATAGCAGGAGCTTAATATATTAGAGTACCTTTTTTTTTTCTTTTACGTAATGATAATTATTTTCGTCGTGTGACTTGAAGGTCATTAGTAAAAGCCATGGAAATAGTATAGTTGACCTAGTTAGTCCTTCTTTTCTAGACTCTGCGTATAATTAGAGCTTAGTGTACGATTCTGCTTTTTTTCTAAAAATGCAACTATCTTCCAGAAATACAAGATAAGATTATATACAACAGATCCAATAAAGTCTAACCTTCTCTGATCCCACACAAAAAGCAAGAACTTTAGTACACCGAATCGCCTTTTATCTTTCGTTGAAATTTTTTAGCACACAATAACAAAATATTACTAATACTAACATTTTCATTTTACAATATTATCTTTTGCAGGAAGGATACAAAGTTGATGATGAAATTGGAAAACTAGAATGTGGACACTACCATCACATTGAGTGCATAAAGAAATGGCTTATGCATAAAAATTCATGTCCTATTTGCAAAATTGCAGCAATCCATGAAAATTAATTATTGACAAAAATTTCTTTCACTTTTCTCTATATTTTTATATTATATAGTCAAGAATATTTAATTTCAGAGGCAGAAATTAAATTTTGGTTTTAATTTTTCCTATTTTTG</genome_strand>
        <mrna_strand>CAATTGGTTGAACTAAGTGATAAAATTGGGTATGTGGGAACAGGTTTAGAAGAAGAGAAGATAGTTGAATATATAAGAAAGTTTAAGCTCTCAACAATTGACTCATATTCAATGCTAATATCTACTGATAAAAGTTGGAGATGTACCATTTGCCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGATACAAAG-T--TGATGAAATTGGAAAACTAGAATGTGGACACTACCATCACATTGAGTGCATAAAGAAATGGCTAATGCATAAAAATGTATGTCCTATTTGCAAAATTTCAGCAATCCATGAAAATTAATTCTTGACAAAAATTTCTTTCACTTTTCTC--TA--TTTATATTATATAGTCAAGAACATTAAATTTCAGAGGCATAAATTGATTCTTGGTTTAAACTTTTCCTATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604314" ref_strand="+" ref_description="SGN-E604314 [74448]">
      <seq>ctagaaataatccgtcatctaatcctgaaatggttgctggtacatacagaacttcagcttcagcggctccacaattagttcagatcactcctggccagcatcagccacaatacgtgaactactctcaggttcaacatccttctcagtcaattcctcctacttcagccactaccaccaattatgcttatgaatttgctgatccacatgctaagatgtactacagtcaggctcttactccccaattggctgcgcaatatcaaaccatgacatccccccctgcagtaagtttcgcagaaacttcctctcagctccctgtggagaattcgaagcagcaaaattagaactttgcaggcatgaaactgtgagttgatcgtaaagaagcaattttgaaacgttggttcagtttgtcttgaatattctgtttaaatgtttgaattcttattgttattggtttgtcgaatgtgtaagttataggtaataagaaagtcggggtctttcttttcttttcttctgtaagtaatgctgttattacccatgaaagcataatggtacaagatcttgctgtaaaatttcaaactcatatggtacattctcagttctatgtatggttttcggaacaaatataaagtcgtgatttgagggatttccaaagttatcgctatgttgcgctgcatatatttgttagtttcactcctctgaatcttgtngttctttgttcatggagaacgatataactcgttctaaacctctctatagtgacactggtttgtctggataaccaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13292" stop="11966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12992" g_stop="12252" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E604314" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12992" e_stop="12252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAAATCCTCCGTCATCTAATCCTGAAATGGTTGCTGGTACATACAGAACTTCAGCTTCAGCGGCTCCACAATTAGTTCAGATCACTCCAGGCCAGCATCAGCCACAATACGTGAACTACTCTCAGATTCATCATCCTTCTCAGTCAATTCCTCCTACTTCAGCCACCACCGCCAATTATGCTTATGATTTCGCTGATCCACATGCTAAGATGTACTATAGTCAGCCTCTTGCTCCCCAATTGTCTGCGCAATATCAAACCATGACATCCGCCCCTGCAGTAAGTTTCGCAGAAACTTCCTCTCAGCTCTCCGCGGAGAACTCAAAGCAGCAAAATTAGAACTTTGCAGGCATGAAACTGTGAGTTGATCGTAAAGAAGCAATTTTGAAACATTGGTTCAGTTTGTCTTGAATATTCTGTTGAAATGTTTGAATTCTTATTGTTATTGGTTTGTCGAATGTGTAAGTTATAGGTAATAAGAAAGTCGGGGTCTTTCTTTTCTTTTCTTCTGTAAGTAATGCTGTTTATTACCCATGAAAGCATAATGGTACAAGATCTTGCTGTATAATTCCAAACTGATATGTTACATCCTCAGTTCTATGTATGGTTTTCGGAACAAATATGAAGTCGTGATTTGAGGGATTTCCAGAG-TATCACTGTGTTGCCCTGCATATATTTGTTAATTTCACTCCTCTGGATCTTGTTGTTTCTTTGTTCAATAGAGAGGACGATACAACTC</genome_strand>
        <mrna_strand>CTAGAAATAATCCGTCATCTAATCCTGAAATGGTTGCTGGTACATACAGAACTTCAGCTTCAGCGGCTCCACAATTAGTTCAGATCACTCCTGGCCAGCATCAGCCACAATACGTGAACTACTCTCAGGTTCAACATCCTTCTCAGTCAATTCCTCCTACTTCAGCCACTACCACCAATTATGCTTATGAATTTGCTGATCCACATGCTAAGATGTACTACAGTCAGGCTCTTACTCCCCAATTGGCTGCGCAATATCAAACCATGACATCCCCCCCTGCAGTAAGTTTCGCAGAAACTTCCTCTCAGCTCCCTGTGGAGAATTCGAAGCAGCAAAATTAGAACTTTGCAGGCATGAAACTGTGAGTTGATCGTAAAGAAGCAATTTTGAAACGTTGGTTCAGTTTGTCTTGAATATTCTGTTTAAATGTTTGAATTCTTATTGTTATTGGTTTGTCGAATGTGTAAGTTATAGGTAATAAGAAAGTCGGGGTCTTTCTTTTCTTTTCTTCTGTAAGTAATGCTG-TTATTACCCATGAAAGCATAATGGTACAAGATCTTGCTGTAAAATTTCAAACTCATATGGTACATTCTCAGTTCTATGTATGGTTTTCGGAACAAATATAAAGTCGTGATTTGAGGGATTTCCAAAGTTATCGCTATGTTGCGCTGCATATATTTGTTAGTTTCACTCCTCTGAATCTTGTNG-TTCTTTGTTC-AT-G-GAGAACGATATAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576917" ref_strand="+" ref_description="SGN-E576917 [31179]">
      <seq>aaaccatgacatccccccctgcagtaagtttcgcagaaacttcctctcagctccctgtggagaattcgaagcagcaaaattagaactttgcaggcatgaaactgtgagttgatcgtaaagaagcaattttgaaacgttggttcagtttgtcttgaatattctgtttaaatgtttgaattcttattgttattggtttgtcgaatgtgtaagttataggtaataagaaagtcggggtctttcttttcttttcttctgtaagtaatgctgttattacccatgaaagcataatggtacaagatcttgctgtaaaatttcaaactcatatggtacattctcagttctatgtatggttttcggaacaaatataaagtcgtgatttgagggatttccaaagttaaaaaaaaaaaaaaaaaacgcgagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13034" stop="12035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12734" g_stop="12339" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="415"/>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E576917" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12734" e_stop="12339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCATGACATCCGCCCCTGCAGTAAGTTTCGCAGAAACTTCCTCTCAGCTCTCCGCGGAGAACTCAAAGCAGCAAAATTAGAACTTTGCAGGCATGAAACTGTGAGTTGATCGTAAAGAAGCAATTTTGAAACATTGGTTCAGTTTGTCTTGAATATTCTGTTGAAATGTTTGAATTCTTATTGTTATTGGTTTGTCGAATGTGTAAGTTATAGGTAATAAGAAAGTCGGGGTCTTTCTTTTCTTTTCTTCTGTAAGTAATGCTGTTTATTACCCATGAAAGCATAATGGTACAAGATCTTGCTGTATAATTCCAAACTGATATGTTACATCCTCAGTTCTATGTATGGTTTTCGGAACAAATATGAAGTCGTGATTTGAGGGATTTCCAGAGT</genome_strand>
        <mrna_strand>AAACCATGACATCCCCCCCTGCAGTAAGTTTCGCAGAAACTTCCTCTCAGCTCCCTGTGGAGAATTCGAAGCAGCAAAATTAGAACTTTGCAGGCATGAAACTGTGAGTTGATCGTAAAGAAGCAATTTTGAAACGTTGGTTCAGTTTGTCTTGAATATTCTGTTTAAATGTTTGAATTCTTATTGTTATTGGTTTGTCGAATGTGTAAGTTATAGGTAATAAGAAAGTCGGGGTCTTTCTTTTCTTTTCTTCTGTAAGTAATGCTG-TTATTACCCATGAAAGCATAATGGTACAAGATCTTGCTGTAAAATTTCAAACTCATATGGTACATTCTCAGTTCTATGTATGGTTTTCGGAACAAATATAAAGTCGTGATTTGAGGGATTTCCAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439435" ref_strand="-" ref_description="SGN-E439435 [cSTA-12-K5]">
      <seq>agtcaattcctcctacttcagccactaccaccaattatgcttatgaatttgctgatccacatgctaagatgtactacagtcaggctcttactccccaattggctgcgcaatatcaaaccatgacatccccccctgcagtaagtttcgcagaaacttcctctcagctccctgtggagaattcgaagcagcaaaattagaactttgcaggcatgaaactgtgagttgatcgtaaagaagcaattttgaaacgttggttcagtttgtcttgaatattctgtttaaatgtttgaattcttattgttattggtttgtcgaatgtgtaagttataggtaataagaaagtcggggtctttcttttcttttcttctgtaagtaatgctgttattacccatgaaagcataatggtacaagatcttgctgtaaaatttcaaactcatatggtacattctcagttctatgtatggttttcggaacaaatataaagtcgtgatttgagggatctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13148" stop="12041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12848" g_stop="12341" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="537"/>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E439435" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439435" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12848" e_stop="12341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAATTCCTCCTACTTCAGCCACCACCGCCAATTATGCTTATGATTTCGCTGATCCACATGCTAAGATGTACTATAGTCAGCCTCTTGCTCCCCAATTGTCTGCGCAATATCAAACCATGACATCCGCCCCTGCAGTAAGTTTCGCAGAAACTTCCTCTCAGCTCTCCGCGGAGAACTCAAAGCAGCAAAATTAGAACTTTGCAGGCATGAAACTGTGAGTTGATCGTAAAGAAGCAATTTTGAAACATTGGTTCAGTTTGTCTTGAATATTCTGTTGAAATGTTTGAATTCTTATTGTTATTGGTTTGTCGAATGTGTAAGTTATAGGTAATAAGAAAGTCGGGGTCTTTCTTTTCTTTTCTTCTGTAAGTAATGCTGTTTATTACCCATGAAAGCATAATGGTACAAGATCTTGCTGTATAATTCCAAACTGATATGTTACATCCTCAGTTCTATGTATGGTTTTCGGAACAAATATGAAGTCGTGATTTGAGGGATTTCCAGA</genome_strand>
        <mrna_strand>AGTCAATTCCTCCTACTTCAGCCACTACCACCAATTATGCTTATGAATTTGCTGATCCACATGCTAAGATGTACTACAGTCAGGCTCTTACTCCCCAATTGGCTGCGCAATATCAAACCATGACATCCCCCCCTGCAGTAAGTTTCGCAGAAACTTCCTCTCAGCTCCCTGTGGAGAATTCGAAGCAGCAAAATTAGAACTTTGCAGGCATGAAACTGTGAGTTGATCGTAAAGAAGCAATTTTGAAACGTTGGTTCAGTTTGTCTTGAATATTCTGTTTAAATGTTTGAATTCTTATTGTTATTGGTTTGTCGAATGTGTAAGTTATAGGTAATAAGAAAGTCGGGGTCTTTCTTTTCTTTTCTTCTGTAAGTAATGCTG-TTATTACCCATGAAAGCATAATGGTACAAGATCTTGCTGTAAAATTTCAAACTCATATGGTACATTCTCAGTTCTATGTATGGTTTTCGGAACAAATATAAAGTCGTGATTTGAGGGATCTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594369" ref_strand="+" ref_description="SGN-E594369 [37619]">
      <seq>tgaatttgctgatccacatgctaagatgtactacagtcaggctcttactccccaattggctgcgcaatatcaaaccatgacatccccccctgcagtaagtttcgcagaaacttcctctcagctccctgtggagaattcgaagcagcaaaattagaactttgcaggcatgaaactgtgagttgatcgtaaagaagcaattttgaaacgttggttcagtttgtcttgaatattctgtttaaatgtttgaattcttattgttattggtttgtcgaatgtgtaagttataggtaataagaaagtcggggtctttcttttcttttcttctgtaagtaatgctgttattacccatgaaagcataatggtacaagatcttgctgtaaaatttcaaactcatatggtacattctcagttctatgtatggttttcggaacaaatataaagtcgtgatttgagggatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13105" stop="12044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12805" g_stop="12344" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E594369" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12805" e_stop="12344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTCGCTGATCCACATGCTAAGATGTACTATAGTCAGCCTCTTGCTCCCCAATTGTCTGCGCAATATCAAACCATGACATCCGCCCCTGCAGTAAGTTTCGCAGAAACTTCCTCTCAGCTCTCCGCGGAGAACTCAAAGCAGCAAAATTAGAACTTTGCAGGCATGAAACTGTGAGTTGATCGTAAAGAAGCAATTTTGAAACATTGGTTCAGTTTGTCTTGAATATTCTGTTGAAATGTTTGAATTCTTATTGTTATTGGTTTGTCGAATGTGTAAGTTATAGGTAATAAGAAAGTCGGGGTCTTTCTTTTCTTTTCTTCTGTAAGTAATGCTGTTTATTACCCATGAAAGCATAATGGTACAAGATCTTGCTGTATAATTCCAAACTGATATGTTACATCCTCAGTTCTATGTATGGTTTTCGGAACAAATATGAAGTCGTGATTTGAGGGATTTCC</genome_strand>
        <mrna_strand>TGAATTTGCTGATCCACATGCTAAGATGTACTACAGTCAGGCTCTTACTCCCCAATTGGCTGCGCAATATCAAACCATGACATCCCCCCCTGCAGTAAGTTTCGCAGAAACTTCCTCTCAGCTCCCTGTGGAGAATTCGAAGCAGCAAAATTAGAACTTTGCAGGCATGAAACTGTGAGTTGATCGTAAAGAAGCAATTTTGAAACGTTGGTTCAGTTTGTCTTGAATATTCTGTTTAAATGTTTGAATTCTTATTGTTATTGGTTTGTCGAATGTGTAAGTTATAGGTAATAAGAAAGTCGGGGTCTTTCTTTTCTTTTCTTCTGTAAGTAATGCTG-TTATTACCCATGAAAGCATAATGGTACAAGATCTTGCTGTAAAATTTCAAACTCATATGGTACATTCTCAGTTCTATGTATGGTTTTCGGAACAAATATAAAGTCGTGATTTGAGGGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307001" ref_strand="+" ref_description="SGN-E307001 [cLEY-11-D16]">
      <seq>agaactagtctcgagtttttttggttttttttttattgggtccgaaaaccatacatagaactgaggatgtaacatatcagtttggaattatacagcaagatcttgtaccattatgctttcatgggtaataaacagcattacttacagaagaaaagaaaagaaagaccccgactttcttattacctataacttacacattcgacaaaccaataacaataagaattcaaacatttcaacagaatattcaagacaaactgaaccaatgtttcaaaattgcttctttacgatcaactcacagtttcatgcctgcaaagttctaattttgctgctttgagttctccgcggagagctgagaggaagtttctgcgaaacttactgcaggggcggatgtcatggtttgatattgcgcagacaattggggagcaagaggctgactatagtacatcttagcatgtggatcagcgaaatcataagcataattggcggtggtggctgaagtaagaggaattgactgagaaggatgatgaatctgagagtagttcacgtattgtggctgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12065" stop="13196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12365" g_stop="12896" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="561" r_length="532" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E307001" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12365" e_stop="12896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATATTTGTTCCGAAAACCATACATAGAACTGAGGATGTAACATATCAGTTTGGAATTATACAGCAAGATCTTGTACCATTATGCTTTCATGGGTAATAAACAGCATTACTTACAGAAGAAAAGAAAAGAAAGACCCCGACTTTCTTATTACCTATAACTTACACATTCGACAAACCAATAACAATAAGAATTCAAACATTTCAACAGAATATTCAAGACAAACTGAACCAATGTTTCAAAATTGCTTCTTTACGATCAACTCACAGTTTCATGCCTGCAAAGTTCTAATTTTGCTGCTTTGAGTTCTCCGCGGAGAGCTGAGAGGAAGTTTCTGCGAAACTTACTGCAGGGGCGGATGTCATGGTTTGATATTGCGCAGACAATTGGGGAGCAAGAGGCTGACTATAGTACATCTTAGCATGTGGATCAGCGAAATCATAAGCATAATTGGCGGTGGTGGCTGAAGTAGGAGGAATTGACTGAGAAGGATGATGAATCTGAGAGTAGTTCACGTATTGTGGCTGATGCT</genome_strand>
        <mrna_strand>TTTTTATTGGGTCCGAAAACCATACATAGAACTGAGGATGTAACATATCAGTTTGGAATTATACAGCAAGATCTTGTACCATTATGCTTTCATGGGTAATAAACAGCATTACTTACAGAAGAAAAGAAAAGAAAGACCCCGACTTTCTTATTACCTATAACTTACACATTCGACAAACCAATAACAATAAGAATTCAAACATTTCAACAGAATATTCAAGACAAACTGAACCAATGTTTCAAAATTGCTTCTTTACGATCAACTCACAGTTTCATGCCTGCAAAGTTCTAATTTTGCTGCTTTGAGTTCTCCGCGGAGAGCTGAGAGGAAGTTTCTGCGAAACTTACTGCAGGGGCGGATGTCATGGTTTGATATTGCGCAGACAATTGGGGAGCAAGAGGCTGACTATAGTACATCTTAGCATGTGGATCAGCGAAATCATAAGCATAATTGGCGGTGGTGGCTGAAGTAAGAGGAATTGACTGAGAAGGATGATGAATCTGAGAGTAGTTCACGTATTGTGGCTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559224" ref_strand="+" ref_description="SGN-E559224 [18688]">
      <seq>tttccgaaaaccatacatagaactgaggatgtaccatatgagtttcaaattttacagcaagatcttgtaccattatgctttcatgggtaataacagcattacttacagaagaaaagaaaagaaagaccccgactttcttattacctataacttacacattcgacaaaccaataacaataagaattcaaacatttaaacagaatattcaagacaaactgaaccaacgtttcaaaattgcttctttacgatcaactcacagtttcatgcctgcaaagttctaattttgctgtttcgaattctccacggggagctgagaggaagtttctgcgaaacttactgcagggggggatgtcatggtttgatattgcgcagccaattggggagtaagagcctgactgtagtacatcttagcatgtggatcagcaaattcataagcataattggtggtagtggctgaagtaggaggaattgactgagaaggatgttgaatctgagagtagttcacgtattgtggctgatgctggccgggagtgatctgaactaattgtggagccgctgaagctgaagttctgtatgtaccagcaaccatttcaggattagatgatggaggatttctaacctgattataagctgatgccggattgaccatagtangaggtggttgggaacgagtaagaaggacagtttgagcaggctcggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12075" stop="13376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12374" g_stop="13076" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E559224" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12374" e_stop="13076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCGAAAACCATACATAGAACTGAGGATGTAACATATCAGTTTGGAATTATACAGCAAGATCTTGTACCATTATGCTTTCATGGGTAATAAACAGCATTACTTACAGAAGAAAAGAAAAGAAAGACCCCGACTTTCTTATTACCTATAACTTACACATTCGACAAACCAATAACAATAAGAATTCAAACATTTCAACAGAATATTCAAGACAAACTGAACCAATGTTTCAAAATTGCTTCTTTACGATCAACTCACAGTTTCATGCCTGCAAAGTTCTAATTTTGCTGCTTTGAGTTCTCCGCGGAGAGCTGAGAGGAAGTTTCTGCGAAACTTACTGCAGGGGCGGATGTCATGGTTTGATATTGCGCAGACAATTGGGGAGCAAGAGGCTGACTATAGTACATCTTAGCATGTGGATCAGCGAAATCATAAGCATAATTGGCGGTGGTGGCTGAAGTAGGAGGAATTGACTGAGAAGGATGATGAATCTGAGAGTAGTTCACGTATTGTGGCTGATGCTGGCCTGGAGTGATCTGAACTAATTGTGGAGCCGCTGAAGCTGAAGTTCTGTATGTACCAGCAACCATTTCAGGATTAGATGACGGAGGATTTCTAGCCGGATTATAAGCTGATGCCGGATTGGCCATAGTAGGAGGTGTTTGGGGACGAGTAGGAGGGACTGTTTGAGCAGGCTCGGTAT</genome_strand>
        <mrna_strand>TTTCCGAAAACCATACATAGAACTGAGGATGTACCATATGAGTTTCAAATTTTACAGCAAGATCTTGTACCATTATGCTTTCATGGGTAAT-AACAGCATTACTTACAGAAGAAAAGAAAAGAAAGACCCCGACTTTCTTATTACCTATAACTTACACATTCGACAAACCAATAACAATAAGAATTCAAACATTTAAACAGAATATTCAAGACAAACTGAACCAACGTTTCAAAATTGCTTCTTTACGATCAACTCACAGTTTCATGCCTGCAAAGTTCTAATTTTGCTGTTTCGAATTCTCCACGGGGAGCTGAGAGGAAGTTTCTGCGAAACTTACTGCAGGGGGGGATGTCATGGTTTGATATTGCGCAGCCAATTGGGGAGTAAGAGCCTGACTGTAGTACATCTTAGCATGTGGATCAGCAAATTCATAAGCATAATTGGTGGTAGTGGCTGAAGTAGGAGGAATTGACTGAGAAGGATGTTGAATCTGAGAGTAGTTCACGTATTGTGGCTGATGCTGGCCGGGAGTGATCTGAACTAATTGTGGAGCCGCTGAAGCTGAAGTTCTGTATGTACCAGCAACCATTTCAGGATTAGATGATGGAGGATTTCTAACCTGATTATAAGCTGATGCCGGATTGACCATAGTANGAGGTGGTTGGGAACGAGTAAGAAGGACAGTTTGAGCAGGCTCGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306604" ref_strand="+" ref_description="SGN-E306604 [cLEY-19-C15]">
      <seq>aactgaggatgtaacatatcactttggaattatacagcaagatcttgtcccattatgctttcatgggtaataaacagcattacttacagaagaaaagaaaagaaagaccccgactttcttattacctataactaacacatacaacaaaccaataacaataagaattcaaacatttcaacagaatattcaagacaaactgaaccaatgtttcaaaattgcttctttacgatcaactcacagtttcatgcctgcaaagatctaattttgctgctttgagttctccgcggagagctgaaaggaagtttctgcgaaacttactgcaggggcggatgacatggtttgatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12094" stop="13041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12394" g_stop="12741" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E306604" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12394" e_stop="12741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAGGATGTAACATATCAGTTTGGAATTATACAGCAAGATCTTGTACCATTATGCTTTCATGGGTAATAAACAGCATTACTTACAGAAGAAAAGAAAAGAAAGACCCCGACTTTCTTATTACCTATAACTTACACATTCGACAAACCAATAACAATAAGAATTCAAACATTTCAACAGAATATTCAAGACAAACTGAACCAATGTTTCAAAATTGCTTCTTTACGATCAACTCACAGTTTCATGCCTGCAAAGTTCTAATTTTGCTGCTTTGAGTTCTCCGCGGAGAGCTGAGAGGAAGTTTCTGCGAAACTTACTGCAGGGGCGGATGTCATGGTTTGATATTG</genome_strand>
        <mrna_strand>AACTGAGGATGTAACATATCACTTTGGAATTATACAGCAAGATCTTGTCCCATTATGCTTTCATGGGTAATAAACAGCATTACTTACAGAAGAAAAGAAAAGAAAGACCCCGACTTTCTTATTACCTATAACTAACACATACAACAAACCAATAACAATAAGAATTCAAACATTTCAACAGAATATTCAAGACAAACTGAACCAATGTTTCAAAATTGCTTCTTTACGATCAACTCACAGTTTCATGCCTGCAAAGATCTAATTTTGCTGCTTTGAGTTCTCCGCGGAGAGCTGAAAGGAAGTTTCTGCGAAACTTACTGCAGGGGCGGATGACATGGTTTGATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604309" ref_strand="+" ref_description="SGN-E604309 [74443]">
      <seq>atgacgtcttactatcctatgtacccttcacagcaccaaacacatatgcaacacccgaatcttgagcaccagtatcccgtttactttattcctgctagacctggccaaggttacagtttgccattgcaacaaacaaattataccgagcctgctcaaacggtccctcctactcgttcccaaacacctcctactatggtcaatccggcctcagcttataatccggctagaaataatccgtcatctaatcctgaaatggttgctggtacatacagaacttcagcttcagcggctccacaattagttcagatcaatcctggccagcatcagccacaatacgtgaactactctcagattcaacatccttctcagtcaattcctcctacttcagccactaccaccaattatgcttatgaatttgctgatccacatgctaagatgtactacagtcaggctcttactccccaattggctgcgcaatatcaaaccatgacatccgcccctgcagtaagtttcgcagaaacttcctctcagttccccgtggagaattcgaagcagcaaaattagaactttgcaggcatgaaactgtgagttggtcgtaaagaagcaattttgaaacgttggttcagtttgtcttgaatattctgtttaaatgtttgaattcttaatgtactggtttgtcgaatgtgtaagttataggtaataagaaagtcgggggtctttctttccttttcttctgtaagtaaatgcttgttattacccatgaaaagcataaatggtcacaagatcttgctgtaaaaatttcaaactcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13515" stop="12110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13215" g_stop="12410" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="811" r_length="811" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E604309" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13215" e_stop="12410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACGTCCTACTATCCTATGTACCCTTCACAGCACCAAACACATATGCAACACCCGAATCTTGAGCACCAGTATCCCGTTTATTTTATTCCTGCTAGACCAGGCCAAGGTTACAGTTTGCCATTGCAACAAACAAATTATACCGAGCCTGCTCAAACAGTCCCTCCTACTCGTCCCCAAACACCTCCTACTATGGCCAATCCGGCATCAGCTTATAATCCGGCTAGAAATCCTCCGTCATCTAATCCTGAAATGGTTGCTGGTACATACAGAACTTCAGCTTCAGCGGCTCCACAATTAGTTCAGATCACTCCAGGCCAGCATCAGCCACAATACGTGAACTACTCTCAGATTCATCATCCTTCTCAGTCAATTCCTCCTACTTCAGCCACCACCGCCAATTATGCTTATGATTTCGCTGATCCACATGCTAAGATGTACTATAGTCAGCCTCTTGCTCCCCAATTGTCTGCGCAATATCAAACCATGACATCCGCCCCTGCAGTAAGTTTCGCAGAAACTTCCTCTCAGCTCTCCGCGGAGAACTCAAAGCAGCAAAATTAGAACTTTGCAGGCATGAAACTGTGAGTTGATCGTAAAGAAGCAATTTTGAAACATTGGTTCAGTTTGTCTTGAATATTCTGTTGAAATGTTTGAATTCTTATTGTTATTGGTTTGTCGAATGTGTAAGTTATAGGTAATAAGAAAGTC-GGGGTCTTTCTTTTCTTTTCTTCTGTAAGT-AATGCTGTTTATTACCCATG-AAAGCAT-AATGGT-ACAAGATCTTGCTGT-ATAATTCCAAACTGATA</genome_strand>
        <mrna_strand>ATGACGTCTTACTATCCTATGTACCCTTCACAGCACCAAACACATATGCAACACCCGAATCTTGAGCACCAGTATCCCGTTTACTTTATTCCTGCTAGACCTGGCCAAGGTTACAGTTTGCCATTGCAACAAACAAATTATACCGAGCCTGCTCAAACGGTCCCTCCTACTCGTTCCCAAACACCTCCTACTATGGTCAATCCGGCCTCAGCTTATAATCCGGCTAGAAATAATCCGTCATCTAATCCTGAAATGGTTGCTGGTACATACAGAACTTCAGCTTCAGCGGCTCCACAATTAGTTCAGATCAATCCTGGCCAGCATCAGCCACAATACGTGAACTACTCTCAGATTCAACATCCTTCTCAGTCAATTCCTCCTACTTCAGCCACTACCACCAATTATGCTTATGAATTTGCTGATCCACATGCTAAGATGTACTACAGTCAGGCTCTTACTCCCCAATTGGCTGCGCAATATCAAACCATGACATCCGCCCCTGCAGTAAGTTTCGCAGAAACTTCCTCTCAGTTCCCCGTGGAGAATTCGAAGCAGCAAAATTAGAACTTTGCAGGCATGAAACTGTGAGTTGGTCGTAAAGAAGCAATTTTGAAACGTTGGTTCAGTTTGTCTTGAATATTCTGTTTAAATGTTTGAATTCTTAATG-TACTGGTTTGTCGAATGTGTAAGTTATAGGTAATAAGAAAGTCGGGGGTCTTTCTTTCCTTTTCTTCTGTAAGTAAATGCTTGTTATTACCCATGAAAAGCATAAATGGTCACAAGATCTTGCTGTAAAAATTTCAAACTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566470" ref_strand="+" ref_description="SGN-E566470 [4909]">
      <seq>ttcatgctgggcagtatatacaacatacaccttcgggggcatgtgcctatgacgtcttactatcctatgtacccttcacagcaccaaacacatatgcaacacccggaatcttgagcaccagtatcccgtttactttattcctgctagacctggccaaggttacagtttgccattgcaacaaacaaattataccgagcctggtcaaacggtccctcctactcgttcccaaacacctcctactatggtcaatccggcctcagcttataatccggctagaaataatccgtcatctaatcctgaaatggttgctggtacatacagaacttcagcttcagcggctccacaattagttcagatcaatcctggccagcatcagccacaatacgtgaactactctcagattcaacatccttctcagtcaattcctcctacttcagccactatcaccaattatgcttatgaatttgctgatccacatgctaagatgtactacagtcaggctcttactccccaattggctgcgcaatatcaaaccatgacatccggccctgcagtaagtttcgcagaaacttcctctcagttccccgtgggagaattcgaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13562" stop="12362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13262" g_stop="12662" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E566470" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13262" e_stop="12662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGCTGGGCAGTATATTCAACATACACCTTCGGG-GCATGTCCCTATGACGTCCTACTATCCTATGTACCCTTCACAGCACCAAACACATATGCAACACCC-GAATCTTGAGCACCAGTATCCCGTTTATTTTATTCCTGCTAGACCAGGCCAAGGTTACAGTTTGCCATTGCAACAAACAAATTATACCGAGCCTGCTCAAACAGTCCCTCCTACTCGTCCCCAAACACCTCCTACTATGGCCAATCCGGCATCAGCTTATAATCCGGCTAGAAATCCTCCGTCATCTAATCCTGAAATGGTTGCTGGTACATACAGAACTTCAGCTTCAGCGGCTCCACAATTAGTTCAGATCACTCCAGGCCAGCATCAGCCACAATACGTGAACTACTCTCAGATTCATCATCCTTCTCAGTCAATTCCTCCTACTTCAGCCACCACCGCCAATTATGCTTATGATTTCGCTGATCCACATGCTAAGATGTACTATAGTCAGCCTCTTGCTCCCCAATTGTCTGCGCAATATCAAACCATGACATCCGCCCCTGCAGTAAGTTTCGCAGAAACTTCCTCTCAGCTCTCCG-CGGAGAACTCAAAGCA</genome_strand>
        <mrna_strand>TTCATGCTGGGCAGTATATACAACATACACCTTCGGGGGCATGTGCCTATGACGTCTTACTATCCTATGTACCCTTCACAGCACCAAACACATATGCAACACCCGGAATCTTGAGCACCAGTATCCCGTTTACTTTATTCCTGCTAGACCTGGCCAAGGTTACAGTTTGCCATTGCAACAAACAAATTATACCGAGCCTGGTCAAACGGTCCCTCCTACTCGTTCCCAAACACCTCCTACTATGGTCAATCCGGCCTCAGCTTATAATCCGGCTAGAAATAATCCGTCATCTAATCCTGAAATGGTTGCTGGTACATACAGAACTTCAGCTTCAGCGGCTCCACAATTAGTTCAGATCAATCCTGGCCAGCATCAGCCACAATACGTGAACTACTCTCAGATTCAACATCCTTCTCAGTCAATTCCTCCTACTTCAGCCACTATCACCAATTATGCTTATGAATTTGCTGATCCACATGCTAAGATGTACTACAGTCAGGCTCTTACTCCCCAATTGGCTGCGCAATATCAAACCATGACATCCGGCCCTGCAGTAAGTTTCGCAGAAACTTCCTCTCAGTTCCCCGTGGGAGAATTCGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296077" ref_strand="+" ref_description="SGN-E296077 [cLET-24-I13]">
      <seq>ccctatgacgtcctactatcctatgtacccttcacagcaccaaacacatatgcaacacccgaatcttgagcaccagtatcccgtttattttattcctgctagaccaggccaaggttacagtttgccattgcaacaaacaaattataccgagcctgctcaaacagtccctcctactcgtccccaaacacctcctactatggccaatccggcatcagcttataatccggctagaaatcctccgtcatctaatcctgaaatggttgctggtacatacagaacttcagcttcagcggctccacaattagttcagatcactccaggccagcatcagccacaatacgtgaactactctcagattcatcatccttctcagtcaattcctcctacttcagccaccaccgccaattatgcttatgatttcgctgatccacatgctaagatgtactatagtcagcctcttgctccccaattgtctgcgcaatatcaaaccatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13519" stop="12424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13219" g_stop="12724" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E296077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13219" e_stop="12724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTATGACGTCCTACTATCCTATGTACCCTTCACAGCACCAAACACATATGCAACACCCGAATCTTGAGCACCAGTATCCCGTTTATTTTATTCCTGCTAGACCAGGCCAAGGTTACAGTTTGCCATTGCAACAAACAAATTATACCGAGCCTGCTCAAACAGTCCCTCCTACTCGTCCCCAAACACCTCCTACTATGGCCAATCCGGCATCAGCTTATAATCCGGCTAGAAATCCTCCGTCATCTAATCCTGAAATGGTTGCTGGTACATACAGAACTTCAGCTTCAGCGGCTCCACAATTAGTTCAGATCACTCCAGGCCAGCATCAGCCACAATACGTGAACTACTCTCAGATTCATCATCCTTCTCAGTCAATTCCTCCTACTTCAGCCACCACCGCCAATTATGCTTATGATTTCGCTGATCCACATGCTAAGATGTACTATAGTCAGCCTCTTGCTCCCCAATTGTCTGCGCAATATCAAACCATGACA</genome_strand>
        <mrna_strand>CCCTATGACGTCCTACTATCCTATGTACCCTTCACAGCACCAAACACATATGCAACACCCGAATCTTGAGCACCAGTATCCCGTTTATTTTATTCCTGCTAGACCAGGCCAAGGTTACAGTTTGCCATTGCAACAAACAAATTATACCGAGCCTGCTCAAACAGTCCCTCCTACTCGTCCCCAAACACCTCCTACTATGGCCAATCCGGCATCAGCTTATAATCCGGCTAGAAATCCTCCGTCATCTAATCCTGAAATGGTTGCTGGTACATACAGAACTTCAGCTTCAGCGGCTCCACAATTAGTTCAGATCACTCCAGGCCAGCATCAGCCACAATACGTGAACTACTCTCAGATTCATCATCCTTCTCAGTCAATTCCTCCTACTTCAGCCACCACCGCCAATTATGCTTATGATTTCGCTGATCCACATGCTAAGATGTACTATAGTCAGCCTCTTGCTCCCCAATTGTCTGCGCAATATCAAACCATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707203" ref_strand="+" ref_description="SGN-E707203 [FA32BD05]">
      <seq>cggtattcaccgatggttgagacgacgtcgtcttttgggtcgggatcgtctatgccgtcgctggcgaatttgccgccgattagggttcatgttgaagagagtcaaaagggaggtggaattgaggagcagtttgcacagatgactgttggggttaagcagaagaatgaggaagggggatttttgggtttagcttcaccgccggcgccggctgttgtagtgacggcgactgttgtttctggtgtgccggtggttgaacagatgatgcaacaacagcagcaacaggtacagcagcctcagcagttgatgtcaaagcctgttattccatctgatttgccttcccctgattcagtttcaagtgagggtagtggtaggcaaagacattacttttatcaagatccaggggttcatttccagtcggggagcggtaggattacaggtaattcagctgatctgaatatgagtgattcgatgggaagggttcaggtgaaacagcaagtccaggatggtggtggtggatatgcattgccagtacaatatgagcagcatccacaaatgctccaaccccaacaatatgttcatgctgggcagtatattcaacatacaccttcggggcatgtccctatgacgtcctactatcctatgtacccttcacagcaccaaacacatatgcaacacccgaatcttgagcaccagtatcccgtttattttattcctgctagaccaggccaaggttacagtttgccattgcaacaaacaaattataccgagcctgctcaaacagtccctcctactcgtccccaaacacctcctactatggccaatccggcatcagcttataatcgggctagaaatcctccgtcatctaatcctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14836" stop="12663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14537" g_stop="14182" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14181" i_stop="13481" i_length="701">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13480" g_stop="12963" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="874" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E707203" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14537" e_stop="14182"/>
          <exon e_start="13480" e_stop="12963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGATTCACCGATGGTTGAGACGACGTCGTCTTTTGGGTCGGGATCGTCTATGCCGTCGCTGGCGAATTTGCCGCCGATTAGGGTTCATGTTGAAGAGAGTCAAAAGGGAGGTGGAATTGAGGAGCAGTTTGCACAGATGACTGTTGGGGTTAAGCAGAAGAATGAGGAAGGGGGATTTTTGGGTTTAGCTTCACCGCCGGCGCCGGCTGTTGTAGTGACGGCGACTGTTGTTTCTGGTGTGCCGGTGGTTGAACAGATGATGCAACAACAGCAGCAACAGGTACAGCAGCCTCAGCAGTTGATGTCAAAGCCTGTTATTCCATCTGATTTGCCTTCCCCTGATTCAGTTTCAAGGTAAAATTCTCTAAAAAAATCTGATCTTTTTGCAAGAATCAAATTGTATCTGTTTGTTGAAACATATTAATTGTCTGAGACTGAGAAATGGTGCATTTACAAGATAACCAGTGTAGTCCTACAAAGCGAGGTCGGGAATGGTAGAGAGTATATGCAAACCTTAGGAGCCTTAGTGGTAGATAGTAGTAGTATTGTTCCTGCAGTTTCTTGTCTTCAGAGCTTAGAGTTGAAGGTTAGTATGAAGCAGGGCGTTGTCTTGTTGTCTGCTCATATTAGTAGTAGCAGTATGACTCTTCTAGTGTCTTTTCCTCGGAGCTTAGAGTAGATGAATAGTGGGAAGCAGGGCGTTGTCTATTTATATTGGTAGTAGTAGTCGTAGTTGCGCGGACTCTTCACTTTTGATGCCCACCTGTCTCGGATTCTTCAAAAATACACTACTTTTGGTGAATCCTTCACGTACCGTTGACATTTTGAAGAGTCCGAGCAACATAGGTAGTAGTATTGTACCTGTAGTTTCTTATCCTCTGATTTTTGTTACTATCTGTTGTCCCTTGTCCCTCGATTATCCGTGTTCTGTTGTAGTTTGTGTTTAGTTGCTATTAGATATTTTTGTTATTATTTGTTTTTGCCTGTACTTCTGTTATGTCTTTTTCCCTGACTGGTGTGGACTGTTTTTAAGATCTTGATTTAATTTGGTGCAGTGAGGGTAGTGGTAGGCAAAGACATTACTTTTATCAAGATCCAGGGGTTCATTTCCAGTCGGGGAGCGGTAGGATTACAGGTAATTCAGCTGATCTGAATATGAGTGATTCGATGGGAAGGGTTCAGGTGAAACAGCAAGTCCAGGATGGTGGTGGTGGATATGCATTGCCAGTACAATATGAGCAGCATCCACAAATGCTCCAACCCCAACAATATGTTCATGCTGGGCAGTATATTCAACATACACCTTCGGGGCATGTCCCTATGACGTCCTACTATCCTATGTACCCTTCACAGCACCAAACACATATGCAACACCCGAATCTTGAGCACCAGTATCCCGTTTATTTTATTCCTGCTAGACCAGGCCAAGGTTACAGTTTGCCATTGCAACAAACAAATTATACCGAGCCTGCTCAAACAGTCCCTCCTACTCGTCCCCAAACACCTCCTACTATGGCCAATCCGGCATCAGCTTATAATCCGGCTAGAAATCCTCCGTCATCTAATCCTGAAA</genome_strand>
        <mrna_strand>CGGTATTCACCGATGGTTGAGACGACGTCGTCTTTTGGGTCGGGATCGTCTATGCCGTCGCTGGCGAATTTGCCGCCGATTAGGGTTCATGTTGAAGAGAGTCAAAAGGGAGGTGGAATTGAGGAGCAGTTTGCACAGATGACTGTTGGGGTTAAGCAGAAGAATGAGGAAGGGGGATTTTTGGGTTTAGCTTCACCGCCGGCGCCGGCTGTTGTAGTGACGGCGACTGTTGTTTCTGGTGTGCCGGTGGTTGAACAGATGATGCAACAACAGCAGCAACAGGTACAGCAGCCTCAGCAGTTGATGTCAAAGCCTGTTATTCCATCTGATTTGCCTTCCCCTGATTCAGTTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGGTAGTGGTAGGCAAAGACATTACTTTTATCAAGATCCAGGGGTTCATTTCCAGTCGGGGAGCGGTAGGATTACAGGTAATTCAGCTGATCTGAATATGAGTGATTCGATGGGAAGGGTTCAGGTGAAACAGCAAGTCCAGGATGGTGGTGGTGGATATGCATTGCCAGTACAATATGAGCAGCATCCACAAATGCTCCAACCCCAACAATATGTTCATGCTGGGCAGTATATTCAACATACACCTTCGGGGCATGTCCCTATGACGTCCTACTATCCTATGTACCCTTCACAGCACCAAACACATATGCAACACCCGAATCTTGAGCACCAGTATCCCGTTTATTTTATTCCTGCTAGACCAGGCCAAGGTTACAGTTTGCCATTGCAACAAACAAATTATACCGAGCCTGCTCAAACAGTCCCTCCTACTCGTCCCCAAACACCTCCTACTATGGCCAATCCGGCATCAGCTTATAATCGGGCTAGAAATCCTCCGTCATCTAATCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269565" ref_strand="+" ref_description="SGN-E269565 [cLEM-2-E2]">
      <seq>gttgatgtcaaagcctgttattccatctgatttgccttcccctgattcagtttcaagtgagggtagtggtaggcaaagacattacttttatcaagatccacgggttcatttccagtcggggagcggtaggattacaggtaattcagctgatctgaatatgagtgattcgatgggaagggttcaggtgaaacagcaagtccaggatggtggtggtggatatgcattgccagtacaatatgagcagcatccacaaatgctccaaccccaacaatatgttcatgctgggcagtatattcaacatacaccttcggggcatgtccctatgacgtcctactatcctatgtacccttcacagcaccgaacacatatgcaacacccgaatcttgagcaccagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14538" stop="12842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14238" g_stop="14182" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14181" i_stop="13481" i_length="701">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13480" g_stop="13142" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="396" r_length="339" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E269565" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14238" e_stop="14182"/>
          <exon e_start="13480" e_stop="13142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGTCAAAGCCTGTTATTCCATCTGATTTGCCTTCCCCTGATTCAGTTTCAAGGTAAAATTCTCTAAAAAAATCTGATCTTTTTGCAAGAATCAAATTGTATCTGTTTGTTGAAACATATTAATTGTCTGAGACTGAGAAATGGTGCATTTACAAGATAACCAGTGTAGTCCTACAAAGCGAGGTCGGGAATGGTAGAGAGTATATGCAAACCTTAGGAGCCTTAGTGGTAGATAGTAGTAGTATTGTTCCTGCAGTTTCTTGTCTTCAGAGCTTAGAGTTGAAGGTTAGTATGAAGCAGGGCGTTGTCTTGTTGTCTGCTCATATTAGTAGTAGCAGTATGACTCTTCTAGTGTCTTTTCCTCGGAGCTTAGAGTAGATGAATAGTGGGAAGCAGGGCGTTGTCTATTTATATTGGTAGTAGTAGTCGTAGTTGCGCGGACTCTTCACTTTTGATGCCCACCTGTCTCGGATTCTTCAAAAATACACTACTTTTGGTGAATCCTTCACGTACCGTTGACATTTTGAAGAGTCCGAGCAACATAGGTAGTAGTATTGTACCTGTAGTTTCTTATCCTCTGATTTTTGTTACTATCTGTTGTCCCTTGTCCCTCGATTATCCGTGTTCTGTTGTAGTTTGTGTTTAGTTGCTATTAGATATTTTTGTTATTATTTGTTTTTGCCTGTACTTCTGTTATGTCTTTTTCCCTGACTGGTGTGGACTGTTTTTAAGATCTTGATTTAATTTGGTGCAGTGAGGGTAGTGGTAGGCAAAGACATTACTTTTATCAAGATCCAGGGGTTCATTTCCAGTCGGGGAGCGGTAGGATTACAGGTAATTCAGCTGATCTGAATATGAGTGATTCGATGGGAAGGGTTCAGGTGAAACAGCAAGTCCAGGATGGTGGTGGTGGATATGCATTGCCAGTACAATATGAGCAGCATCCACAAATGCTCCAACCCCAACAATATGTTCATGCTGGGCAGTATATTCAACATACACCTTCGGGGCATGTCCCTATGACGTCCTACTATCCTATGTACCCTTCACAGCACCAAACACATATGCAACACCCGAATCTTGAGCACCAGTA</genome_strand>
        <mrna_strand>GTTGATGTCAAAGCCTGTTATTCCATCTGATTTGCCTTCCCCTGATTCAGTTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGGTAGTGGTAGGCAAAGACATTACTTTTATCAAGATCCACGGGTTCATTTCCAGTCGGGGAGCGGTAGGATTACAGGTAATTCAGCTGATCTGAATATGAGTGATTCGATGGGAAGGGTTCAGGTGAAACAGCAAGTCCAGGATGGTGGTGGTGGATATGCATTGCCAGTACAATATGAGCAGCATCCACAAATGCTCCAACCCCAACAATATGTTCATGCTGGGCAGTATATTCAACATACACCTTCGGGGCATGTCCCTATGACGTCCTACTATCCTATGTACCCTTCACAGCACCGAACACATATGCAACACCCGAATCTTGAGCACCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427316" ref_strand="+" ref_description="SGN-E427316 [STM-48-O23]">
      <seq>tactgcttcaacaaaggtattttctgagtcttcttcagtgaattgccttctgggtttagacgatgatttaggaaatgcgaatattaaagaagtagaagcacaattagaggtaaaaaatggtgggaatagtgtgaaaggtactatacatgatattcaatcggtgccggattctccgatggttgaaacgacgtcgtcttttgggtcgggatcgtctatgccgtcgctggcgaatttgccgccgataagggttcatgtcgaggagagtcaaaagggaggtggaattgaggagcagtttgcacagatgactgttggggttaagcagaagaatgaggaaggggggatttttgggtttagcttcaccgccggcgccggctgttgtagtgccgacgactgttgtttccggtgtgccggcagttgagcagatgatgcaacaacagcagcaacagatacagcagcctcagcaattgatgtcaaagcctgttattccatctgatttgccttcccctgattcagtttcaagtgagggtagtggtaggcaaagacattacttttatcaagatccaggggttcatttccagtcggggagcggtaggatttcaggtaattcagttgatctgaatatgagtgattcgatngggaagggttcaggtgaagcacaagttcaggattggtggtggtggatatgcattgccagtacaatatgagcagcacccaccaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15000" stop="12980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14700" g_stop="14182" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14181" i_stop="13481" i_length="701">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13480" g_stop="13280" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="722" r_length="202" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E427316" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14700" e_stop="14182"/>
          <exon e_start="13480" e_stop="13280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCTTCAACAAAGGTATTTTCTGAATCTTCTTCAGTGAATTGCCTTCTGGGTTTAGACGATGATTTAGGAAATGCGAATATTAAGGAAGTAGAAGCTCAATTAGAGGTAAAAAATGGTGGGAATAGTGTGAAAGGTACTATACATGATGTTCAATCGGTGCCGGATTCACCGATGGTTGAGACGACGTCGTCTTTTGGGTCGGGATCGTCTATGCCGTCGCTGGCGAATTTGCCGCCGATTAGGGTTCATGTTGAAGAGAGTCAAAAGGGAGGTGGAATTGAGGAGCAGTTTGCACAGATGACTGTTGGGGTTAAGCAGAAGAATGAGGAA-GGGGGATTTTTGGGTTTAGCTTCACCGCCGGCGCCGGCTGTTGTAGTGACGGCGACTGTTGTTTCTGGTGTGCCGGTGGTTGAACAGATGATGCAACAACAGCAGCAACAGGTACAGCAGCCTCAGCAGTTGATGTCAAAGCCTGTTATTCCATCTGATTTGCCTTCCCCTGATTCAGTTTCAAGGTAAAATTCTCTAAAAAAATCTGATCTTTTTGCAAGAATCAAATTGTATCTGTTTGTTGAAACATATTAATTGTCTGAGACTGAGAAATGGTGCATTTACAAGATAACCAGTGTAGTCCTACAAAGCGAGGTCGGGAATGGTAGAGAGTATATGCAAACCTTAGGAGCCTTAGTGGTAGATAGTAGTAGTATTGTTCCTGCAGTTTCTTGTCTTCAGAGCTTAGAGTTGAAGGTTAGTATGAAGCAGGGCGTTGTCTTGTTGTCTGCTCATATTAGTAGTAGCAGTATGACTCTTCTAGTGTCTTTTCCTCGGAGCTTAGAGTAGATGAATAGTGGGAAGCAGGGCGTTGTCTATTTATATTGGTAGTAGTAGTCGTAGTTGCGCGGACTCTTCACTTTTGATGCCCACCTGTCTCGGATTCTTCAAAAATACACTACTTTTGGTGAATCCTTCACGTACCGTTGACATTTTGAAGAGTCCGAGCAACATAGGTAGTAGTATTGTACCTGTAGTTTCTTATCCTCTGATTTTTGTTACTATCTGTTGTCCCTTGTCCCTCGATTATCCGTGTTCTGTTGTAGTTTGTGTTTAGTTGCTATTAGATATTTTTGTTATTATTTGTTTTTGCCTGTACTTCTGTTATGTCTTTTTCCCTGACTGGTGTGGACTGTTTTTAAGATCTTGATTTAATTTGGTGCAGTGAGGGTAGTGGTAGGCAAAGACATTACTTTTATCAAGATCCAGGGGTTCATTTCCAGTCGGGGAGCGGTAGGATTACAGGTAATTCAGCTGATCTGAATATGAGTGATTCGAT-GGGAAGGGTTCAGGTGAAACAGCAAGTCCAGGA-TGGTGGTGGTGGATATGCATTGCCAGTACAATATGAGCAGCATCCACAAATGCT</genome_strand>
        <mrna_strand>TACTGCTTCAACAAAGGTATTTTCTGAGTCTTCTTCAGTGAATTGCCTTCTGGGTTTAGACGATGATTTAGGAAATGCGAATATTAAAGAAGTAGAAGCACAATTAGAGGTAAAAAATGGTGGGAATAGTGTGAAAGGTACTATACATGATATTCAATCGGTGCCGGATTCTCCGATGGTTGAAACGACGTCGTCTTTTGGGTCGGGATCGTCTATGCCGTCGCTGGCGAATTTGCCGCCGATAAGGGTTCATGTCGAGGAGAGTCAAAAGGGAGGTGGAATTGAGGAGCAGTTTGCACAGATGACTGTTGGGGTTAAGCAGAAGAATGAGGAAGGGGGGATTTTTGGGTTTAGCTTCACCGCCGGCGCCGGCTGTTGTAGTGCCGACGACTGTTGTTTCCGGTGTGCCGGCAGTTGAGCAGATGATGCAACAACAGCAGCAACAGATACAGCAGCCTCAGCAATTGATGTCAAAGCCTGTTATTCCATCTGATTTGCCTTCCCCTGATTCAGTTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGGTAGTGGTAGGCAAAGACATTACTTTTATCAAGATCCAGGGGTTCATTTCCAGTCGGGGAGCGGTAGGATTTCAGGTAATTCAGTTGATCTGAATATGAGTGATTCGATNGGGAAGGGTTCAGGTGAAGCA-CAAGTTCAGGATTGGTGGTGGTGGATATGCATTGCCAGTACAATATGAGCAGCACCCACCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317875" ref_strand="+" ref_description="SGN-E317875 [cTOA-30-J16]">
      <seq>ttggtatgattagagatagttcagtgagatctgaagattggtttgtgaatattttaaatggggcaaattctactgcttcaacaaaggtattttctgaatcttcttcagtgaattgccttctgggtttagacgatgatttaggaaatgcgaatattaaggaagtagaagctcaattagaggtaaaaaatggtgggaatagtgtgaaaggtactatacatgatgttcaatcggtgccggattcaccgatggttgagacgacgtcgtcttttgggtcgggatcgtctatgccgtcgctggcgaatttgccgccgattagggttcatgttgaagagagtcaaaagggaggtggaattgaggagcagtttgcacagatgactgttggggttaagcagaagaatgaggaagggggatttttgggtttagcttcaccgccggcgccggctgttgtagtgacggcgactgttgtttctggtgtgccggtggttgaacagatgatgcaacaacagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15070" stop="13961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14770" g_stop="14261" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E317875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14770" e_stop="14261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTATGATTAGAGATAGTTCAGTGAGATCTGAAGATTGGTTTGTGAATATTTTAAATGGGGCAAATTCTACTGCTTCAACAAAGGTATTTTCTGAATCTTCTTCAGTGAATTGCCTTCTGGGTTTAGACGATGATTTAGGAAATGCGAATATTAAGGAAGTAGAAGCTCAATTAGAGGTAAAAAATGGTGGGAATAGTGTGAAAGGTACTATACATGATGTTCAATCGGTGCCGGATTCACCGATGGTTGAGACGACGTCGTCTTTTGGGTCGGGATCGTCTATGCCGTCGCTGGCGAATTTGCCGCCGATTAGGGTTCATGTTGAAGAGAGTCAAAAGGGAGGTGGAATTGAGGAGCAGTTTGCACAGATGACTGTTGGGGTTAAGCAGAAGAATGAGGAAGGGGGATTTTTGGGTTTAGCTTCACCGCCGGCGCCGGCTGTTGTAGTGACGGCGACTGTTGTTTCTGGTGTGCCGGTGGTTGAACAGATGATGCAACAACAGCAGC</genome_strand>
        <mrna_strand>TTGGTATGATTAGAGATAGTTCAGTGAGATCTGAAGATTGGTTTGTGAATATTTTAAATGGGGCAAATTCTACTGCTTCAACAAAGGTATTTTCTGAATCTTCTTCAGTGAATTGCCTTCTGGGTTTAGACGATGATTTAGGAAATGCGAATATTAAGGAAGTAGAAGCTCAATTAGAGGTAAAAAATGGTGGGAATAGTGTGAAAGGTACTATACATGATGTTCAATCGGTGCCGGATTCACCGATGGTTGAGACGACGTCGTCTTTTGGGTCGGGATCGTCTATGCCGTCGCTGGCGAATTTGCCGCCGATTAGGGTTCATGTTGAAGAGAGTCAAAAGGGAGGTGGAATTGAGGAGCAGTTTGCACAGATGACTGTTGGGGTTAAGCAGAAGAATGAGGAAGGGGGATTTTTGGGTTTAGCTTCACCGCCGGCGCCGGCTGTTGTAGTGACGGCGACTGTTGTTTCTGGTGTGCCGGTGGTTGAACAGATGATGCAACAACAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486292" ref_strand="+" ref_description="SGN-E486292 [cSTE-21-P23]">
      <seq>tattgtttcaacaaaggtattttctgagtcttcttcagtgaatttccttctgggtttagacgatgatttaggaaatgcgaatattaaagaagtagaagcacaattagaggtaaaaaatggtgggaatagtgtgaaaggtactatacatgatattcaatcggtgccggattctccgatggttgaaacgacgtcgtcttttgggtcgggatcgtctatgccgtcgctggcgaatttgccgccgataagggttcatgtcgaggagagtcaaaatggaggtggaattgaggagcagtttgcacagatgactgttggggttaagcagaataatgaagaagggggatttttgggtttagcttcaccgccagcgccggctgttgtactgccgactactgttgtttacggtgtgccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15000" stop="13991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14700" g_stop="14291" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E486292" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14700" e_stop="14291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCTTCAACAAAGGTATTTTCTGAATCTTCTTCAGTGAATTGCCTTCTGGGTTTAGACGATGATTTAGGAAATGCGAATATTAAGGAAGTAGAAGCTCAATTAGAGGTAAAAAATGGTGGGAATAGTGTGAAAGGTACTATACATGATGTTCAATCGGTGCCGGATTCACCGATGGTTGAGACGACGTCGTCTTTTGGGTCGGGATCGTCTATGCCGTCGCTGGCGAATTTGCCGCCGATTAGGGTTCATGTTGAAGAGAGTCAAAAGGGAGGTGGAATTGAGGAGCAGTTTGCACAGATGACTGTTGGGGTTAAGCAGAAGAATGAGGAAGGGGGATTTTTGGGTTTAGCTTCACCGCCGGCGCCGGCTGTTGTAGTGACGGCGACTGTTGTTTCTGGTGTGCCGG</genome_strand>
        <mrna_strand>TATTGTTTCAACAAAGGTATTTTCTGAGTCTTCTTCAGTGAATTTCCTTCTGGGTTTAGACGATGATTTAGGAAATGCGAATATTAAAGAAGTAGAAGCACAATTAGAGGTAAAAAATGGTGGGAATAGTGTGAAAGGTACTATACATGATATTCAATCGGTGCCGGATTCTCCGATGGTTGAAACGACGTCGTCTTTTGGGTCGGGATCGTCTATGCCGTCGCTGGCGAATTTGCCGCCGATAAGGGTTCATGTCGAGGAGAGTCAAAATGGAGGTGGAATTGAGGAGCAGTTTGCACAGATGACTGTTGGGGTTAAGCAGAATAATGAAGAAGGGGGATTTTTGGGTTTAGCTTCACCGCCAGCGCCGGCTGTTGTACTGCCGACTACTGTTGTTTACGGTGTGCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578588" ref_strand="+" ref_description="SGN-E578588 [85707]">
      <seq>gctctctaaaacccttctcggaggccgacccttttgcctgaagtatcagcttcagaacgaggacctcgattcacttatctccgttacctccgatgaggatctggaaaacatgatcgatgaatacgatcgtatgagttcgtcttctaaaattactcggcttcgtttgtttctgtttccgagtaaaattgattcgtggaatccttcaattggaatgatcagagatagttcagtgagatctgaagattggtttgttaatattttaaatggggcaaattctactgcttcaacaaaggtattttctgagtcttcttcagtgaattgccttctgggtttagacgatgatttaggaaatgcgaatattaaaagaagtagaagcacaattagaggtaacaacatggttgggaatagtgtgaaaggtacttatacatgatattcaatcggtgccgggattctcccgatggtttgaaacgacgtcgtcttttgaggtcgggatcgtcaatgccgtcgctggcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15276" stop="14170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14976" g_stop="14470" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E578588" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14976" e_stop="14470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCTAAAACCCTTCTCGGAGGGAAACCCTTTTGCTTGAAGTATCAGCTTCAGAACGAGGACCTTGATTCACTTATCTCCGTTACCTCCGATGAGGATCTGGAAAACATGATCGATGAATACGATCGCATGAGTTCGTCTTCTAAAATTACTCGGCTTCGTTTGTTTCTGTTTCCGAGTAAAATTGATTCATGGAATCCTTCAATTGGTATGATTAGAGATAGTTCAGTGAGATCTGAAGATTGGTTTGTGAATATTTTAAATGGGGCAAATTCTACTGCTTCAACAAAGGTATTTTCTGAATCTTCTTCAGTGAATTGCCTTCTGGGTTTAGACGATGATTTAGGAAATGCGAATATT-AAGGAAGTAGAAGCTCAATTAGAGGTAA-AAAATGG-TGGGAATAGTGTGAAAGGTAC-TATACATGATGTTCAATCGGTGCC-GGATTC-ACCGATGG-TTGAGACGACGTCGTCTTTTG-GGTCGGGATCGTCTATGCCGTCGCTGGCGAA</genome_strand>
        <mrna_strand>GCTCTCTAAAACCCTTCTCGGAGGCCGACCCTTTTGCCTGAAGTATCAGCTTCAGAACGAGGACCTCGATTCACTTATCTCCGTTACCTCCGATGAGGATCTGGAAAACATGATCGATGAATACGATCGTATGAGTTCGTCTTCTAAAATTACTCGGCTTCGTTTGTTTCTGTTTCCGAGTAAAATTGATTCGTGGAATCCTTCAATTGGAATGATCAGAGATAGTTCAGTGAGATCTGAAGATTGGTTTGTTAATATTTTAAATGGGGCAAATTCTACTGCTTCAACAAAGGTATTTTCTGAGTCTTCTTCAGTGAATTGCCTTCTGGGTTTAGACGATGATTTAGGAAATGCGAATATTAAAAGAAGTAGAAGCACAATTAGAGGTAACAACATGGTTGGGAATAGTGTGAAAGGTACTTATACATGATATTCAATCGGTGCCGGGATTCTCCCGATGGTTTGAAACGACGTCGTCTTTTGAGGTCGGGATCGTCAATGCCGTCGCTGGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437519" ref_strand="+" ref_description="SGN-E437519 [cSTA-4-E7]">
      <seq>caccgatttccggcggaccaaacacggaggcgacgggagccgtgccaccgtcgggaaccatcaattatgctgactcagcatatcctcaccgggatcccgccatactgattcctgagacgagcagcatcagccgtcacacaccgccgccgtcaccaccggcggtaaaactccggttaatgtgcagctatggaggacacatattccctcttccccacgacaaaactctctgctacgtcggcggcgacacccgcattttcgtcgccgatcgtaacacctcgttggctgagctgtctgctcgactctctaaaacccttctcggaggccaacccttttgcctgaagtatcagcttcagaacgaggacctcgattcacttatctccgttacctccgatgaggatctggaaaacatgatcgatgaatacaatcgtatgacttcgtcttctaaaattactcggcttcgtttgtttctgtttccgagtaaaattgattcgtggaatccttcaattggaatgattagagatagatcagtgagatctgaagattggtttgctaatattctaaatggggcaaattctactgcttcaacaaaggtattttctgagtcttcttcagtgaattgcctactgggtttagacgatgatttangaaatgcgaatattaaagaagtagcagcacaattacaggtaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15574" stop="14283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15274" g_stop="14583" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E437519" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15274" e_stop="14583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGTTTTCCGGCGGACCAATCACGGCGGCGACGGCAGCTGTGCCACCGTCGGGAACCATCAATTATGCAGACTCGGCAGATTCTTCACCGGGATCCCGCCACACTGATTCCTGGGACGAGCAGCAGCAGCCGTCAAACACCGCCGCCACTACCACCGGCGG-GAAACTGCGGTTAATGTGCAGCTATGGAGGACACATATTCCCTCGTCCTCACGACAAAACTCTTTGCTACGTCGGCGGTGACACCCGCATTTTCGTCGCCGATCGTAACAGCTCTTTGGCTGAGTTGTCTGCTCGGCTCTCTAAAACCCTTCTCGGAGGGAAACCCTTTTGCTTGAAGTATCAGCTTCAGAACGAGGACCTTGATTCACTTATCTCCGTTACCTCCGATGAGGATCTGGAAAACATGATCGATGAATACGATCGCATGAGTTCGTCTTCTAAAATTACTCGGCTTCGTTTGTTTCTGTTTCCGAGTAAAATTGATTCATGGAATCCTTCAATTGGTATGATTAGAGATAGTTCAGTGAGATCTGAAGATTGGTTTGTGAATATTTTAAATGGGGCAAATTCTACTGCTTCAACAAAGGTATTTTCTGAATCTTCTTCAGTGAATTGCCTTCTGGGTTTAGACGATGATTTAGGAAATGCGAATATTAAGGAAGTAGAAGCTCAATTAGAGGTAAAAAAT</genome_strand>
        <mrna_strand>CACCGATTTCCGGCGGACCAAACACGGAGGCGACGGGAGCCGTGCCACCGTCGGGAACCATCAATTATGCTGACTCAGCATA-TCCTCACCGGGATCCCGCCATACTGATTCCTGAGACGAGCAGCATCAGCCGTCACACACCGCCGCCGTCACCACCGGCGGTAAAACTCCGGTTAATGTGCAGCTATGGAGGACACATATTCCCTCTTCCCCACGACAAAACTCTCTGCTACGTCGGCGGCGACACCCGCATTTTCGTCGCCGATCGTAACACCTCGTTGGCTGAGCTGTCTGCTCGACTCTCTAAAACCCTTCTCGGAGGCCAACCCTTTTGCCTGAAGTATCAGCTTCAGAACGAGGACCTCGATTCACTTATCTCCGTTACCTCCGATGAGGATCTGGAAAACATGATCGATGAATACAATCGTATGACTTCGTCTTCTAAAATTACTCGGCTTCGTTTGTTTCTGTTTCCGAGTAAAATTGATTCGTGGAATCCTTCAATTGGAATGATTAGAGATAGATCAGTGAGATCTGAAGATTGGTTTGCTAATATTCTAAATGGGGCAAATTCTACTGCTTCAACAAAGGTATTTTCTGAGTCTTCTTCAGTGAATTGCCTACTGGGTTTAGACGATGATTTANGAAATGCGAATATTAAAGAAGTAGCAGCACAATTACAGGTAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445559" ref_strand="+" ref_description="SGN-E445559 [cSTA-1-E7]">
      <seq>caccgatttccggcggaccaaacacggaggcgacgggagccgtgccaccgtcgggaaccatcaattatgctgactcagcatatcctcaccgggatcccgccatactgattcctgagacgagcagcatcagccgtcacacaccgccgccgtcaccaccggcggtaaaactccggttaatgtgcagctatggaggacacatattccctcttccccacgacaaaactctctgctacgtcggcggcgacacccgcattttcgtcgccgatcgtaacacctcgttggctgagctgtctgctcgactctctaaaacccttctcggaggccaacccttttgcctgaagtatcagcttcagaacgaggacctcgattcacttatctccgttacctccgatgaggatctggaaaacatgatcgatgaatacaatcgtatgacttcgtcttctaaaattactcggcttcgtttgtttctgtttccgagtaaaattgattcgtggaatccttcaattggaatgattagagatagatcagtgagatctgaagattggtttgctaatattctaaatggggcaaattctactgcttcaacaaaggtattttctgagtcttcttcagtgaattgcctactgggtttagacgatgatttangaaatgcgaatattaaagaagtagcagcacaattacaggtaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15574" stop="14283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15274" g_stop="14583" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E445559" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15274" e_stop="14583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGTTTTCCGGCGGACCAATCACGGCGGCGACGGCAGCTGTGCCACCGTCGGGAACCATCAATTATGCAGACTCGGCAGATTCTTCACCGGGATCCCGCCACACTGATTCCTGGGACGAGCAGCAGCAGCCGTCAAACACCGCCGCCACTACCACCGGCGG-GAAACTGCGGTTAATGTGCAGCTATGGAGGACACATATTCCCTCGTCCTCACGACAAAACTCTTTGCTACGTCGGCGGTGACACCCGCATTTTCGTCGCCGATCGTAACAGCTCTTTGGCTGAGTTGTCTGCTCGGCTCTCTAAAACCCTTCTCGGAGGGAAACCCTTTTGCTTGAAGTATCAGCTTCAGAACGAGGACCTTGATTCACTTATCTCCGTTACCTCCGATGAGGATCTGGAAAACATGATCGATGAATACGATCGCATGAGTTCGTCTTCTAAAATTACTCGGCTTCGTTTGTTTCTGTTTCCGAGTAAAATTGATTCATGGAATCCTTCAATTGGTATGATTAGAGATAGTTCAGTGAGATCTGAAGATTGGTTTGTGAATATTTTAAATGGGGCAAATTCTACTGCTTCAACAAAGGTATTTTCTGAATCTTCTTCAGTGAATTGCCTTCTGGGTTTAGACGATGATTTAGGAAATGCGAATATTAAGGAAGTAGAAGCTCAATTAGAGGTAAAAAAT</genome_strand>
        <mrna_strand>CACCGATTTCCGGCGGACCAAACACGGAGGCGACGGGAGCCGTGCCACCGTCGGGAACCATCAATTATGCTGACTCAGCATA-TCCTCACCGGGATCCCGCCATACTGATTCCTGAGACGAGCAGCATCAGCCGTCACACACCGCCGCCGTCACCACCGGCGGTAAAACTCCGGTTAATGTGCAGCTATGGAGGACACATATTCCCTCTTCCCCACGACAAAACTCTCTGCTACGTCGGCGGCGACACCCGCATTTTCGTCGCCGATCGTAACACCTCGTTGGCTGAGCTGTCTGCTCGACTCTCTAAAACCCTTCTCGGAGGCCAACCCTTTTGCCTGAAGTATCAGCTTCAGAACGAGGACCTCGATTCACTTATCTCCGTTACCTCCGATGAGGATCTGGAAAACATGATCGATGAATACAATCGTATGACTTCGTCTTCTAAAATTACTCGGCTTCGTTTGTTTCTGTTTCCGAGTAAAATTGATTCGTGGAATCCTTCAATTGGAATGATTAGAGATAGATCAGTGAGATCTGAAGATTGGTTTGCTAATATTCTAAATGGGGCAAATTCTACTGCTTCAACAAAGGTATTTTCTGAGTCTTCTTCAGTGAATTGCCTACTGGGTTTAGACGATGATTTANGAAATGCGAATATTAAAGAAGTAGCAGCACAATTACAGGTAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213991" ref_strand="+" ref_description="SGN-E213991 [cLEC-80-B24]">
      <seq>ttgtttagcaaaacagctgtgaggactataaagcaaaaaacagctctggcaaaactatcttctttttttctctctctcccttttattcaagtctctttcctatatggaccctccaccgttttccggcggaccaatcacggcggcgacggcagctgtgccaccgtcgggaaccatcaattatgcagactcggcagattcttcaccgggatcccgccacactgattcctgggacgagcagcagcagccgtcaaacaccgccgccactaccaccggcgggaaactgcggttaatgtgcagctatggaggacacatattccctcgtcctcacgacaaaactctttgctacgtcggcggtgacacccgcattttcgtcgccgatcgtaacagctctttggctgagttgtctgctcggctctctaaaacccttctcggagggaaacccttttgcttgaagtatcagcttcagaacgaggaccttgattcacttatctccgttacctccgatgaggatctggaaaacatgatcgatgaatacgatcgcatgagttcgtcttctaaaattactcggcttcgtttgtttctgtttccgagtaaaattgattcatggaatccttcaattggtatgattagagatagttcagtgagatctgaagattggtttgtgaatattttacatggggcaaattctactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15687" stop="14394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15387" g_stop="14694" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E213991" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15387" e_stop="14694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTAGCAAAACAGCTGTGAGGACTATAAAGCAAAAAACAGCTCTGGCAAAACTATCTTCTTTTTTTCTCTCTCTCCCTTTTATTCAAGTCTCTTTCCTATATGGACCCTCCACCGTTTTCCGGCGGACCAATCACGGCGGCGACGGCAGCTGTGCCACCGTCGGGAACCATCAATTATGCAGACTCGGCAGATTCTTCACCGGGATCCCGCCACACTGATTCCTGGGACGAGCAGCAGCAGCCGTCAAACACCGCCGCCACTACCACCGGCGGGAAACTGCGGTTAATGTGCAGCTATGGAGGACACATATTCCCTCGTCCTCACGACAAAACTCTTTGCTACGTCGGCGGTGACACCCGCATTTTCGTCGCCGATCGTAACAGCTCTTTGGCTGAGTTGTCTGCTCGGCTCTCTAAAACCCTTCTCGGAGGGAAACCCTTTTGCTTGAAGTATCAGCTTCAGAACGAGGACCTTGATTCACTTATCTCCGTTACCTCCGATGAGGATCTGGAAAACATGATCGATGAATACGATCGCATGAGTTCGTCTTCTAAAATTACTCGGCTTCGTTTGTTTCTGTTTCCGAGTAAAATTGATTCATGGAATCCTTCAATTGGTATGATTAGAGATAGTTCAGTGAGATCTGAAGATTGGTTTGTGAATATTTTAAATGGGGCAAATTCTACTGCT</genome_strand>
        <mrna_strand>TTGTTTAGCAAAACAGCTGTGAGGACTATAAAGCAAAAAACAGCTCTGGCAAAACTATCTTCTTTTTTTCTCTCTCTCCCTTTTATTCAAGTCTCTTTCCTATATGGACCCTCCACCGTTTTCCGGCGGACCAATCACGGCGGCGACGGCAGCTGTGCCACCGTCGGGAACCATCAATTATGCAGACTCGGCAGATTCTTCACCGGGATCCCGCCACACTGATTCCTGGGACGAGCAGCAGCAGCCGTCAAACACCGCCGCCACTACCACCGGCGGGAAACTGCGGTTAATGTGCAGCTATGGAGGACACATATTCCCTCGTCCTCACGACAAAACTCTTTGCTACGTCGGCGGTGACACCCGCATTTTCGTCGCCGATCGTAACAGCTCTTTGGCTGAGTTGTCTGCTCGGCTCTCTAAAACCCTTCTCGGAGGGAAACCCTTTTGCTTGAAGTATCAGCTTCAGAACGAGGACCTTGATTCACTTATCTCCGTTACCTCCGATGAGGATCTGGAAAACATGATCGATGAATACGATCGCATGAGTTCGTCTTCTAAAATTACTCGGCTTCGTTTGTTTCTGTTTCCGAGTAAAATTGATTCATGGAATCCTTCAATTGGTATGATTAGAGATAGTTCAGTGAGATCTGAAGATTGGTTTGTGAATATTTTACATGGGGCAAATTCTACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416796" ref_strand="+" ref_description="SGN-E416796 [STM-23-L15]">
      <seq>ctctttttttttcagtctctttcctatatggaccctccaccgttttccggcggaccaatcacggcggcgacggcagccgtgccaccgtcgggaaccatcaattatgctgactcagcagattcctcaccgggatcccgccatactgattcctgggatgagcagcagcagccgtcacacaccgccgccgccaccaccggtggaaaactccggttaatgtgcagctatggaggacacatattccctcgtccccacgacaaaactctctgctacgtcggcggcgacacccgcattttcgtcgccgatcgtaacagctcgctggctgagctgtctgctcggctctctaaaacccttctcggaggccgacccttttgcctgaagtatcagcttcagaacgaggacctcgattcacttatctccgttacctccgatgaggatctggaaaacatgatcgatgaatacgatcgtatgagttcgtcttctaaaattactcggcttcgtttgtttctgtttccgagtaaaattgattcgtggaatccttcaattggaatgatcagagatagttcagtgagatctgaagattggtttgttaatattttaaatggggcaaattctactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15612" stop="14395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15312" g_stop="14695" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E416796" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15312" e_stop="14695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTTTATTCAAGTCTCTTTCCTATATGGACCCTCCACCGTTTTCCGGCGGACCAATCACGGCGGCGACGGCAGCTGTGCCACCGTCGGGAACCATCAATTATGCAGACTCGGCAGATTCTTCACCGGGATCCCGCCACACTGATTCCTGGGACGAGCAGCAGCAGCCGTCAAACACCGCCGCCACTACCACCGGCGGGAAACTGCGGTTAATGTGCAGCTATGGAGGACACATATTCCCTCGTCCTCACGACAAAACTCTTTGCTACGTCGGCGGTGACACCCGCATTTTCGTCGCCGATCGTAACAGCTCTTTGGCTGAGTTGTCTGCTCGGCTCTCTAAAACCCTTCTCGGAGGGAAACCCTTTTGCTTGAAGTATCAGCTTCAGAACGAGGACCTTGATTCACTTATCTCCGTTACCTCCGATGAGGATCTGGAAAACATGATCGATGAATACGATCGCATGAGTTCGTCTTCTAAAATTACTCGGCTTCGTTTGTTTCTGTTTCCGAGTAAAATTGATTCATGGAATCCTTCAATTGGTATGATTAGAGATAGTTCAGTGAGATCTGAAGATTGGTTTGTGAATATTTTAAATGGGGCAAATTCTACTGC</genome_strand>
        <mrna_strand>CTCTTTTTTTTTCA-GTCTCTTTCCTATATGGACCCTCCACCGTTTTCCGGCGGACCAATCACGGCGGCGACGGCAGCCGTGCCACCGTCGGGAACCATCAATTATGCTGACTCAGCAGATTCCTCACCGGGATCCCGCCATACTGATTCCTGGGATGAGCAGCAGCAGCCGTCACACACCGCCGCCGCCACCACCGGTGGAAAACTCCGGTTAATGTGCAGCTATGGAGGACACATATTCCCTCGTCCCCACGACAAAACTCTCTGCTACGTCGGCGGCGACACCCGCATTTTCGTCGCCGATCGTAACAGCTCGCTGGCTGAGCTGTCTGCTCGGCTCTCTAAAACCCTTCTCGGAGGCCGACCCTTTTGCCTGAAGTATCAGCTTCAGAACGAGGACCTCGATTCACTTATCTCCGTTACCTCCGATGAGGATCTGGAAAACATGATCGATGAATACGATCGTATGAGTTCGTCTTCTAAAATTACTCGGCTTCGTTTGTTTCTGTTTCCGAGTAAAATTGATTCGTGGAATCCTTCAATTGGAATGATCAGAGATAGTTCAGTGAGATCTGAAGATTGGTTTGTTAATATTTTAAATGGGGCAAATTCTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411656" ref_strand="+" ref_description="SGN-E411656 [STM-15-E9]">
      <seq>tttctcctccctttttttcagtctctttcctatatggaccctccaccgttttccggcggaccaatcacggcggcgacggcagccgtgccaccgtcgggaaccatcaattatgctgactcagcagattcctcaccgggatcccgccacactgattcctgggacgagcagcagcagccgtcacacaccgccgccgccaccaccggcggaaaactccggttaatgtgcagctatggaggacacatattccctcgccctcacgacaaaactctctgctacgtcggcggcgacacccgcattttcgtcgccgatcgtaatagctcgttggctgagctgtctgctcggctctctaaaacccttctcggaggccgacccttttgcctgaagtatcagcttcagaacgaggacctcgattcacttatctccggtacctccgatgaagatctggaaaacatgatcgatgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15620" stop="14554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15319" g_stop="14854" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E411656" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15319" e_stop="14854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCCCTTTTATTCAAGTCTCTTTCCTATATGGACCCTCCACCGTTTTCCGGCGGACCAATCACGGCGGCGACGGCAGCTGTGCCACCGTCGGGAACCATCAATTATGCAGACTCGGCAGATTCTTCACCGGGATCCCGCCACACTGATTCCTGGGACGAGCAGCAGCAGCCGTCAAACACCGCCGCCACTACCACCGGCGGGAAACTGCGGTTAATGTGCAGCTATGGAGGACACATATTCCCTCGTCCTCACGACAAAACTCTTTGCTACGTCGGCGGTGACACCCGCATTTTCGTCGCCGATCGTAACAGCTCTTTGGCTGAGTTGTCTGCTCGGCTCTCTAAAACCCTTCTCGGAGGGAAACCCTTTTGCTTGAAGTATCAGCTTCAGAACGAGGACCTTGATTCACTTATCTCCGTTACCTCCGATGAGGATCTGGAAAACATGATCGATGAATA</genome_strand>
        <mrna_strand>TTTCTC-CTCCCTTTTTTTC-AGTCTCTTTCCTATATGGACCCTCCACCGTTTTCCGGCGGACCAATCACGGCGGCGACGGCAGCCGTGCCACCGTCGGGAACCATCAATTATGCTGACTCAGCAGATTCCTCACCGGGATCCCGCCACACTGATTCCTGGGACGAGCAGCAGCAGCCGTCACACACCGCCGCCGCCACCACCGGCGGAAAACTCCGGTTAATGTGCAGCTATGGAGGACACATATTCCCTCGCCCTCACGACAAAACTCTCTGCTACGTCGGCGGCGACACCCGCATTTTCGTCGCCGATCGTAATAGCTCGTTGGCTGAGCTGTCTGCTCGGCTCTCTAAAACCCTTCTCGGAGGCCGACCCTTTTGCCTGAAGTATCAGCTTCAGAACGAGGACCTCGATTCACTTATCTCCGGTACCTCCGATGAAGATCTGGAAAACATGATCGATGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205533" ref_strand="+" ref_description="SGN-E205533 [cLEC-28-F18]">
      <seq>tttcctatatggaccctccaccgggttccggcggaccaatcacggaggcgacggcagctgtgccaccgtcgggaaccatcaattatgcagactcgggagattcttcaccgggatcccgccacactgattcctgggacgagcagcagcagccgtcaaacaccgccgccactaccaccggcgggaaactgcggttaatgtgcagctatggaggacacatattccctcgtcctcacgacaaaactctttgctacgtcggcggtgacacccgcattatcgtcgccgatcgtaacagctctttggctgagttgtctgctcggctctctaaaacccttctcggagggaaacccttttgcttgaagtatcagcttcagaacgaggaccttgattcacttatcttcgttacctccgaagaggatctggaaaacatgatcgatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15592" stop="14555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15292" g_stop="14855" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E205533" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15292" e_stop="14855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTATATGGACCCTCCACCGTTTTCCGGCGGACCAATCACGGCGGCGACGGCAGCTGTGCCACCGTCGGGAACCATCAATTATGCAGACTCGGCAGATTCTTCACCGGGATCCCGCCACACTGATTCCTGGGACGAGCAGCAGCAGCCGTCAAACACCGCCGCCACTACCACCGGCGGGAAACTGCGGTTAATGTGCAGCTATGGAGGACACATATTCCCTCGTCCTCACGACAAAACTCTTTGCTACGTCGGCGGTGACACCCGCATTTTCGTCGCCGATCGTAACAGCTCTTTGGCTGAGTTGTCTGCTCGGCTCTCTAAAACCCTTCTCGGAGGGAAACCCTTTTGCTTGAAGTATCAGCTTCAGAACGAGGACCTTGATTCACTTATCTCCGTTACCTCCGATGAGGATCTGGAAAACATGATCGATGAAT</genome_strand>
        <mrna_strand>TTTCCTATATGGACCCTCCACCGGGTTCCGGCGGACCAATCACGGAGGCGACGGCAGCTGTGCCACCGTCGGGAACCATCAATTATGCAGACTCGGGAGATTCTTCACCGGGATCCCGCCACACTGATTCCTGGGACGAGCAGCAGCAGCCGTCAAACACCGCCGCCACTACCACCGGCGGGAAACTGCGGTTAATGTGCAGCTATGGAGGACACATATTCCCTCGTCCTCACGACAAAACTCTTTGCTACGTCGGCGGTGACACCCGCATTATCGTCGCCGATCGTAACAGCTCTTTGGCTGAGTTGTCTGCTCGGCTCTCTAAAACCCTTCTCGGAGGGAAACCCTTTTGCTTGAAGTATCAGCTTCAGAACGAGGACCTTGATTCACTTATCTTCGTTACCTCCGAAGAGGATCTGGAAAACATGATCGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373161" ref_strand="+" ref_description="SGN-E373161 [TUS-32-G5]">
      <seq>ctgatggtaaagatgagtatgatcggtggggaaacgtgaaatgtcatggtaaagaaagtgatattaaggaaggacataagagtttcccaagcggacatacaagtgcatcatttgctggtctcgggtttctatcattgtatttggctgggaagattaaagcatttgatcgacgagggcatatagctaaactatgcatagtttttcttcctcttctaatggcatctcttgtcggggtctcacgtgtggatgactactggcatcattggcaagacgtatttgctggaggactgataggtcttttcgttgcagcgttctgttatctgcagttcttcccagctccataccatactgaaggatggggaccatatgcatatttccgggcagtggaggaggttcgtgttagcagacaacacgccacccctaccaacggaggagtagaggtagaacattccgaggtacaactgaatcagcaatctggtacaactaccattgcttttgaggatgtggagaatggcagaatatgagacatgtataaacactgtatacttatgcttatatctatagcaaagttctattaggtatttggaaatatgtaaaatgaacaagcaaagaaattaaaatttagtaagaatcgatcgaatcgagttatgatctgctttttagctcaaataaacttttatgattgaccgtctcgtttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="18936" stop="16974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18762" g_stop="18749" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18748" i_stop="18635" i_length="114">
            <donor d_prob="0.837" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18634" g_stop="18544" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="105" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18543" i_stop="18461" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.700" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18460" g_stop="18272" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="294" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18271" i_stop="18182" i_length="90">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18181" g_stop="18122" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="354" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18121" i_stop="17622" i_length="500">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17621" g_stop="17274" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="702" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="703" polyA_stop="745"/>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E373161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18762" e_stop="18749"/>
          <exon e_start="18634" e_stop="18544"/>
          <exon e_start="18460" e_stop="18272"/>
          <exon e_start="18181" e_stop="18122"/>
          <exon e_start="17621" e_stop="17274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGTAAAGATGTATGTATCCGTTACGTTTATCTGATATGATAGTGAAAGCCATGAAGAATGCATATTGCTTAACTTGGTGCTCGATTATGTAGTAATTTTCGATTGATTTATTTCGTTGTTTAGGAGTATGATCGGTGGGGAAACGTGAAATGTCATGGTAAAGAAAGTGATATTAAGGAAGGACATAAGAGTTTCCCAAGCGGACATACAAGTGGTCTGAATTCTCGTATAATCTTTCTTTCTTTAGTGGGACGACAAAAGAGTCTGATATAACGAAATATGGCTTCTTATTTGCAGCATCATTTGCTGGTCTCGGGTTTCTATCATTGTATTTGGCTGGGAAGATTAAAGCATTTGATCGACGAGGGCATATAGCTAAACTATGCATAGTTTTTCTTCCTCTTCTAATGGCATCTCTTGTCGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTATTTGCTGGAGGACTGATAGGTTCGTCTTGATCAAATTCAACATTTTGAAGTACACGATGGCTACGTTTCATTTCATAAATACTAAACTCCATGTCGTTTCACATTTCAGGTCTTTTCGTTGCAGCGTTCTGTTATCTGCAGTTCTTCCCAGCTCCATACCATACTGAAGGTACTTCGAATTATTTTGTCGTATCCAGACTAATACCATGTTAAGTTAAAGTCGTCAACCAACAAAACCACTCGTTACAAATAAGATCTTGTTAGTATTGACTAGTATCTAGCTTATGTTTGACATATATTCCATTTTGATAGCGTTGAAAAAAGCACTATCTCGTTGAAAGGTTCTATAGTACTGCATCTCCTCTTTCTCAACGCATTTCCCTTAAACAATGAAAAGCTCCGATCATCTTAACATGATCCTTTTGTCGACTGATGCTCTTATTACACTCGTAGTCAATTAGTATACCTTATGCTTATCATATTACTAAGCTTTTGTCTTGAACTACACATATAGTATCACTAGCATTCCCAAAGCACAATCGCGTTTCTCTTCTAATTTCCAACTATTTCCCCCCTTTTCATTGCTAATCTCCTTTACGTGATTTTACTGTTACAGTGGACAAAATTCTGAAATCAACGCGATATGTTCATTTTTTTCATTGTTCTCAGGATGGGGACCATATGCATATTTCCGGGCAGTGGAGGAGGTTCGTGTTAGCAGACAACACGCCACCCCTACCAACGGAGGAGTAGAGGTAGAACATTCCGAGGTACAACTGAATCAGCAATCTGGTACAACTACCATTGCTTTTGAGGATGTGGAGAATGGCAGAATATGAGACATGTATAAACACTGTATACTTATGCTTATATCTATAGCAAAGTTCTATTAGGTATTTGGAAATATGTAAAATGAACAAGCAAAGAAATTAAAATTTAGTAAGAATCGATCGAATCGAGTTATGATCTGCTTTTTAGCTCAAATAAACTTTTATGATTGACCGTCTCGTTTATTTA</genome_strand>
        <mrna_strand>CTGATGGTAAAGAT..................................................................................................................GAGTATGATCGGTGGGGAAACGTGAAATGTCATGGTAAAGAAAGTGATATTAAGGAAGGACATAAGAGTTTCCCAAGCGGACATACAAGTG...................................................................................CATCATTTGCTGGTCTCGGGTTTCTATCATTGTATTTGGCTGGGAAGATTAAAGCATTTGATCGACGAGGGCATATAGCTAAACTATGCATAGTTTTTCTTCCTCTTCTAATGGCATCTCTTGTCGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTATTTGCTGGAGGACTGATAG..........................................................................................GTCTTTTCGTTGCAGCGTTCTGTTATCTGCAGTTCTTCCCAGCTCCATACCATACTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGACCATATGCATATTTCCGGGCAGTGGAGGAGGTTCGTGTTAGCAGACAACACGCCACCCCTACCAACGGAGGAGTAGAGGTAGAACATTCCGAGGTACAACTGAATCAGCAATCTGGTACAACTACCATTGCTTTTGAGGATGTGGAGAATGGCAGAATATGAGACATGTATAAACACTGTATACTTATGCTTATATCTATAGCAAAGTTCTATTAGGTATTTGGAAATATGTAAAATGAACAAGCAAAGAAATTAAAATTTAGTAAGAATCGATCGAATCGAGTTATGATCTGCTTTTTAGCTCAAATAAACTTTTATGATTGACCGTCTCGTTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373163" ref_strand="+" ref_description="SGN-E373163 [TUS-32-G9]">
      <seq>ctgatggtaaagatgagtatgatcggtggggaaacgtgaaatgtcatggtaaagaaagtgatattaaggaaggacataagagtttcccaagcggacatacaagtgcatcatttgctggtctcgggtttctatcattgtatttggctgggaagattaaagcatttgatcgacgagggcatatagctaaactatgcatagtttttcttcctcttctaatggcatctcttgtcggggtctcacgtgtggatgactactggcatcattggcaagacgtatttgctggaggactgataggtcttttcgttgcagcgttctgttatctgcagttcttcccagctccataccatactgaaggatggggaccatatgcatatttccgggcagtggaggaggttcgtgttagcagacaacacgccacccctaccaacggaggagtagaggtagaacattccgaggtacaactgaatcagcaatctggtacaactaccattgcttttgaggatgtggagaatggcagaatatgagacatgtataaacactgtatacttatgcttatatctatagcaaagttctattaggtatttggaaatatgtaaaatgaacaagcaaagaaattaaaatttagtaagaatcgatcgaatcgagttatgatctgctttttagctcaaataaacttttatgattgaccgtctcgtttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="18936" stop="16974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18762" g_stop="18749" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18748" i_stop="18635" i_length="114">
            <donor d_prob="0.837" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18634" g_stop="18544" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="105" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18543" i_stop="18461" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.700" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18460" g_stop="18272" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="294" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18271" i_stop="18182" i_length="90">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18181" g_stop="18122" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="354" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18121" i_stop="17622" i_length="500">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17621" g_stop="17274" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="702" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="703" polyA_stop="737"/>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E373163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18762" e_stop="18749"/>
          <exon e_start="18634" e_stop="18544"/>
          <exon e_start="18460" e_stop="18272"/>
          <exon e_start="18181" e_stop="18122"/>
          <exon e_start="17621" e_stop="17274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGTAAAGATGTATGTATCCGTTACGTTTATCTGATATGATAGTGAAAGCCATGAAGAATGCATATTGCTTAACTTGGTGCTCGATTATGTAGTAATTTTCGATTGATTTATTTCGTTGTTTAGGAGTATGATCGGTGGGGAAACGTGAAATGTCATGGTAAAGAAAGTGATATTAAGGAAGGACATAAGAGTTTCCCAAGCGGACATACAAGTGGTCTGAATTCTCGTATAATCTTTCTTTCTTTAGTGGGACGACAAAAGAGTCTGATATAACGAAATATGGCTTCTTATTTGCAGCATCATTTGCTGGTCTCGGGTTTCTATCATTGTATTTGGCTGGGAAGATTAAAGCATTTGATCGACGAGGGCATATAGCTAAACTATGCATAGTTTTTCTTCCTCTTCTAATGGCATCTCTTGTCGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTATTTGCTGGAGGACTGATAGGTTCGTCTTGATCAAATTCAACATTTTGAAGTACACGATGGCTACGTTTCATTTCATAAATACTAAACTCCATGTCGTTTCACATTTCAGGTCTTTTCGTTGCAGCGTTCTGTTATCTGCAGTTCTTCCCAGCTCCATACCATACTGAAGGTACTTCGAATTATTTTGTCGTATCCAGACTAATACCATGTTAAGTTAAAGTCGTCAACCAACAAAACCACTCGTTACAAATAAGATCTTGTTAGTATTGACTAGTATCTAGCTTATGTTTGACATATATTCCATTTTGATAGCGTTGAAAAAAGCACTATCTCGTTGAAAGGTTCTATAGTACTGCATCTCCTCTTTCTCAACGCATTTCCCTTAAACAATGAAAAGCTCCGATCATCTTAACATGATCCTTTTGTCGACTGATGCTCTTATTACACTCGTAGTCAATTAGTATACCTTATGCTTATCATATTACTAAGCTTTTGTCTTGAACTACACATATAGTATCACTAGCATTCCCAAAGCACAATCGCGTTTCTCTTCTAATTTCCAACTATTTCCCCCCTTTTCATTGCTAATCTCCTTTACGTGATTTTACTGTTACAGTGGACAAAATTCTGAAATCAACGCGATATGTTCATTTTTTTCATTGTTCTCAGGATGGGGACCATATGCATATTTCCGGGCAGTGGAGGAGGTTCGTGTTAGCAGACAACACGCCACCCCTACCAACGGAGGAGTAGAGGTAGAACATTCCGAGGTACAACTGAATCAGCAATCTGGTACAACTACCATTGCTTTTGAGGATGTGGAGAATGGCAGAATATGAGACATGTATAAACACTGTATACTTATGCTTATATCTATAGCAAAGTTCTATTAGGTATTTGGAAATATGTAAAATGAACAAGCAAAGAAATTAAAATTTAGTAAGAATCGATCGAATCGAGTTATGATCTGCTTTTTAGCTCAAATAAACTTTTATGATTGACCGTCTCGTTTATTTA</genome_strand>
        <mrna_strand>CTGATGGTAAAGAT..................................................................................................................GAGTATGATCGGTGGGGAAACGTGAAATGTCATGGTAAAGAAAGTGATATTAAGGAAGGACATAAGAGTTTCCCAAGCGGACATACAAGTG...................................................................................CATCATTTGCTGGTCTCGGGTTTCTATCATTGTATTTGGCTGGGAAGATTAAAGCATTTGATCGACGAGGGCATATAGCTAAACTATGCATAGTTTTTCTTCCTCTTCTAATGGCATCTCTTGTCGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTATTTGCTGGAGGACTGATAG..........................................................................................GTCTTTTCGTTGCAGCGTTCTGTTATCTGCAGTTCTTCCCAGCTCCATACCATACTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGACCATATGCATATTTCCGGGCAGTGGAGGAGGTTCGTGTTAGCAGACAACACGCCACCCCTACCAACGGAGGAGTAGAGGTAGAACATTCCGAGGTACAACTGAATCAGCAATCTGGTACAACTACCATTGCTTTTGAGGATGTGGAGAATGGCAGAATATGAGACATGTATAAACACTGTATACTTATGCTTATATCTATAGCAAAGTTCTATTAGGTATTTGGAAATATGTAAAATGAACAAGCAAAGAAATTAAAATTTAGTAAGAATCGATCGAATCGAGTTATGATCTGCTTTTTAGCTCAAATAAACTTTTATGATTGACCGTCTCGTTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302219" ref_strand="-" ref_description="SGN-E302219 [cLEW-19-A24]">
      <seq>tagtttttcttcctcttctaatggcatctcttgtcggggtctcacgtgtggatgactactggcatcattggcaagacgtatttgctggaggactgataggtcttttcgttgcagcgttctgttatctgcagttcttcccagctccataccatactgaaggatggggaccatatgcatatttccgggcagtggaggaggttcgtgttagcagacaacacgccacccctaccaacggaggagtagaggtagaacattccgaggtacaactgaatcagcaatctggtacaactaccattgcttttgaggatgtggagaatggcagaatatgagacatgtataaacactgtatacttatgcttatatctatagcaaagttctattaggtatttggaaatatgtaaaatgaacaagcaaaggaattaaaatttagtaaaaatcgatcaaatngacttatgatctgctttttagctcaaaaaaaaaaaaaaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="18670" stop="17003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18370" g_stop="18272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18271" i_stop="18182" i_length="90">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18181" g_stop="18122" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="159" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18121" i_stop="17622" i_length="500">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17621" g_stop="17308" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="473" r_length="314" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="490"/>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E302219" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302219" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18370" e_stop="18272"/>
          <exon e_start="18181" e_stop="18122"/>
          <exon e_start="17621" e_stop="17308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTTTTCTTCCTCTTCTAATGGCATCTCTTGTCGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTATTTGCTGGAGGACTGATAGGTTCGTCTTGATCAAATTCAACATTTTGAAGTACACGATGGCTACGTTTCATTTCATAAATACTAAACTCCATGTCGTTTCACATTTCAGGTCTTTTCGTTGCAGCGTTCTGTTATCTGCAGTTCTTCCCAGCTCCATACCATACTGAAGGTACTTCGAATTATTTTGTCGTATCCAGACTAATACCATGTTAAGTTAAAGTCGTCAACCAACAAAACCACTCGTTACAAATAAGATCTTGTTAGTATTGACTAGTATCTAGCTTATGTTTGACATATATTCCATTTTGATAGCGTTGAAAAAAGCACTATCTCGTTGAAAGGTTCTATAGTACTGCATCTCCTCTTTCTCAACGCATTTCCCTTAAACAATGAAAAGCTCCGATCATCTTAACATGATCCTTTTGTCGACTGATGCTCTTATTACACTCGTAGTCAATTAGTATACCTTATGCTTATCATATTACTAAGCTTTTGTCTTGAACTACACATATAGTATCACTAGCATTCCCAAAGCACAATCGCGTTTCTCTTCTAATTTCCAACTATTTCCCCCCTTTTCATTGCTAATCTCCTTTACGTGATTTTACTGTTACAGTGGACAAAATTCTGAAATCAACGCGATATGTTCATTTTTTTCATTGTTCTCAGGATGGGGACCATATGCATATTTCCGGGCAGTGGAGGAGGTTCGTGTTAGCAGACAACACGCCACCCCTACCAACGGAGGAGTAGAGGTAGAACATTCCGAGGTACAACTGAATCAGCAATCTGGTACAACTACCATTGCTTTTGAGGATGTGGAGAATGGCAGAATATGAGACATGTATAAACACTGTATACTTATGCTTATATCTATAGCAAAGTTCTATTAGGTATTTGGAAATATGTAAAATGAACAAGCAAAGAAATTAAAATTTAGTAAGAATCGATCGAATCGAGTTATGATCTGCTTTTTAGCTCAA</genome_strand>
        <mrna_strand>TAGTTTTTCTTCCTCTTCTAATGGCATCTCTTGTCGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTATTTGCTGGAGGACTGATAG..........................................................................................GTCTTTTCGTTGCAGCGTTCTGTTATCTGCAGTTCTTCCCAGCTCCATACCATACTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGACCATATGCATATTTCCGGGCAGTGGAGGAGGTTCGTGTTAGCAGACAACACGCCACCCCTACCAACGGAGGAGTAGAGGTAGAACATTCCGAGGTACAACTGAATCAGCAATCTGGTACAACTACCATTGCTTTTGAGGATGTGGAGAATGGCAGAATATGAGACATGTATAAACACTGTATACTTATGCTTATATCTATAGCAAAGTTCTATTAGGTATTTGGAAATATGTAAAATGAACAAGCAAAGGAATTAAAATTTAGTAAAAATCGATCAAATNGACTTATGATCTGCTTTTTAGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301965" ref_strand="+" ref_description="SGN-E301965 [cLEX-3-B24]">
      <seq>tgaatcagcaatctggtacaactaccattgcttttgaggatgtggagaatggcagaatatgagacatgtataaacactgtatacttatgcttatatctatagcaaagttctattaggtatttggaaatatgtaaaatgaacaagcaaagaaattaaaatttagtaagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17813" stop="17045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17513" g_stop="17346" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="169" polyA_stop="186"/>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E301965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>168</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17513" e_stop="17346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCAGCAATCTGGTACAACTACCATTGCTTTTGAGGATGTGGAGAATGGCAGAATATGAGACATGTATAAACACTGTATACTTATGCTTATATCTATAGCAAAGTTCTATTAGGTATTTGGAAATATGTAAAATGAACAAGCAAAGAAATTAAAATTTAGTAAGA</genome_strand>
        <mrna_strand>TGAATCAGCAATCTGGTACAACTACCATTGCTTTTGAGGATGTGGAGAATGGCAGAATATGAGACATGTATAAACACTGTATACTTATGCTTATATCTATAGCAAAGTTCTATTAGGTATTTGGAAATATGTAAAATGAACAAGCAAAGAAATTAAAATTTAGTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397172" ref_strand="+" ref_description="SGN-E397172 [TUS-45-K3]">
      <seq>cctgatggtaaagatgagtatgatcggtggggaaacgtgaaatgtcatggtaaagaaagtgatattaaggaaggacataagagtttcccaagcggacatacaagtgcatcatttgctggtctcgggtttctatcattgtatttggctgggaagattaaagcatttgatcgacgagggcatatagctaaactatgcatagtttttcttcctcttctaatggcatctcttgtcggggtctcacgtgtggatgactactggcatcattggcaagacgtatttgctggaggactgataggtcttttcgttgcagcgttctgttatctgcagttcttcccagctccataccatactgaaggatggggaccatatgcatatttccgggcagtggaggaggttcgtgttagcagacaacacgccacccctaccaacggaggagtagaggtagaacattccgaggtacaactgaatcagcaatctggtacaactaccattgcttttgaggatgtggagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="19063" stop="17163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18763" g_stop="18749" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18748" i_stop="18635" i_length="114">
            <donor d_prob="0.837" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18634" g_stop="18544" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="106" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18543" i_stop="18461" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.700" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18460" g_stop="18272" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="295" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18271" i_stop="18182" i_length="90">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18181" g_stop="18122" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="355" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18121" i_stop="17622" i_length="500">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17621" g_stop="17463" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="514" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E397172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18763" e_stop="18749"/>
          <exon e_start="18634" e_stop="18544"/>
          <exon e_start="18460" e_stop="18272"/>
          <exon e_start="18181" e_stop="18122"/>
          <exon e_start="17621" e_stop="17463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGGTAAAGATGTATGTATCCGTTACGTTTATCTGATATGATAGTGAAAGCCATGAAGAATGCATATTGCTTAACTTGGTGCTCGATTATGTAGTAATTTTCGATTGATTTATTTCGTTGTTTAGGAGTATGATCGGTGGGGAAACGTGAAATGTCATGGTAAAGAAAGTGATATTAAGGAAGGACATAAGAGTTTCCCAAGCGGACATACAAGTGGTCTGAATTCTCGTATAATCTTTCTTTCTTTAGTGGGACGACAAAAGAGTCTGATATAACGAAATATGGCTTCTTATTTGCAGCATCATTTGCTGGTCTCGGGTTTCTATCATTGTATTTGGCTGGGAAGATTAAAGCATTTGATCGACGAGGGCATATAGCTAAACTATGCATAGTTTTTCTTCCTCTTCTAATGGCATCTCTTGTCGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTATTTGCTGGAGGACTGATAGGTTCGTCTTGATCAAATTCAACATTTTGAAGTACACGATGGCTACGTTTCATTTCATAAATACTAAACTCCATGTCGTTTCACATTTCAGGTCTTTTCGTTGCAGCGTTCTGTTATCTGCAGTTCTTCCCAGCTCCATACCATACTGAAGGTACTTCGAATTATTTTGTCGTATCCAGACTAATACCATGTTAAGTTAAAGTCGTCAACCAACAAAACCACTCGTTACAAATAAGATCTTGTTAGTATTGACTAGTATCTAGCTTATGTTTGACATATATTCCATTTTGATAGCGTTGAAAAAAGCACTATCTCGTTGAAAGGTTCTATAGTACTGCATCTCCTCTTTCTCAACGCATTTCCCTTAAACAATGAAAAGCTCCGATCATCTTAACATGATCCTTTTGTCGACTGATGCTCTTATTACACTCGTAGTCAATTAGTATACCTTATGCTTATCATATTACTAAGCTTTTGTCTTGAACTACACATATAGTATCACTAGCATTCCCAAAGCACAATCGCGTTTCTCTTCTAATTTCCAACTATTTCCCCCCTTTTCATTGCTAATCTCCTTTACGTGATTTTACTGTTACAGTGGACAAAATTCTGAAATCAACGCGATATGTTCATTTTTTTCATTGTTCTCAGGATGGGGACCATATGCATATTTCCGGGCAGTGGAGGAGGTTCGTGTTAGCAGACAACACGCCACCCCTACCAACGGAGGAGTAGAGGTAGAACATTCCGAGGTACAACTGAATCAGCAATCTGGTACAACTACCATTGCTTTTGAGGATGTGGAGAATG</genome_strand>
        <mrna_strand>CCTGATGGTAAAGAT..................................................................................................................GAGTATGATCGGTGGGGAAACGTGAAATGTCATGGTAAAGAAAGTGATATTAAGGAAGGACATAAGAGTTTCCCAAGCGGACATACAAGTG...................................................................................CATCATTTGCTGGTCTCGGGTTTCTATCATTGTATTTGGCTGGGAAGATTAAAGCATTTGATCGACGAGGGCATATAGCTAAACTATGCATAGTTTTTCTTCCTCTTCTAATGGCATCTCTTGTCGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTATTTGCTGGAGGACTGATAG..........................................................................................GTCTTTTCGTTGCAGCGTTCTGTTATCTGCAGTTCTTCCCAGCTCCATACCATACTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGACCATATGCATATTTCCGGGCAGTGGAGGAGGTTCGTGTTAGCAGACAACACGCCACCCCTACCAACGGAGGAGTAGAGGTAGAACATTCCGAGGTACAACTGAATCAGCAATCTGGTACAACTACCATTGCTTTTGAGGATGTGGAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292632" ref_strand="+" ref_description="SGN-E292632 [cLET-11-I15]">
      <seq>ctgatggtaaagatgagtatgatcggtggggaaacgtgaaatgtcatggtaaagaaagtgatattaaggaaggacataagagtttcccaagcggacatacaagtgcatcatttgctggtctcgggtttctatcattgtatttggctgggaagattaaagcatttgatcgacgagggcatatagctaaactatgcatagtttttcttcctcttctaatggcatctcttgtcggggtctcacgtgtggatgactactggcatcattggcaagacgtatttgctggaggactgataggtcttttcgttgcagcgttctgttatctgcagttcttcccagctccataccatactgaaggatggggaccatatgcatatttccgggcagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="18936" stop="17288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18762" g_stop="18749" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18748" i_stop="18635" i_length="114">
            <donor d_prob="0.837" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18634" g_stop="18544" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="105" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18543" i_stop="18461" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.700" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18460" g_stop="18272" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="294" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18271" i_stop="18182" i_length="90">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18181" g_stop="18122" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="354" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18121" i_stop="17622" i_length="500">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17621" g_stop="17588" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="388" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E292632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18762" e_stop="18749"/>
          <exon e_start="18634" e_stop="18544"/>
          <exon e_start="18460" e_stop="18272"/>
          <exon e_start="18181" e_stop="18122"/>
          <exon e_start="17621" e_stop="17588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGTAAAGATGTATGTATCCGTTACGTTTATCTGATATGATAGTGAAAGCCATGAAGAATGCATATTGCTTAACTTGGTGCTCGATTATGTAGTAATTTTCGATTGATTTATTTCGTTGTTTAGGAGTATGATCGGTGGGGAAACGTGAAATGTCATGGTAAAGAAAGTGATATTAAGGAAGGACATAAGAGTTTCCCAAGCGGACATACAAGTGGTCTGAATTCTCGTATAATCTTTCTTTCTTTAGTGGGACGACAAAAGAGTCTGATATAACGAAATATGGCTTCTTATTTGCAGCATCATTTGCTGGTCTCGGGTTTCTATCATTGTATTTGGCTGGGAAGATTAAAGCATTTGATCGACGAGGGCATATAGCTAAACTATGCATAGTTTTTCTTCCTCTTCTAATGGCATCTCTTGTCGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTATTTGCTGGAGGACTGATAGGTTCGTCTTGATCAAATTCAACATTTTGAAGTACACGATGGCTACGTTTCATTTCATAAATACTAAACTCCATGTCGTTTCACATTTCAGGTCTTTTCGTTGCAGCGTTCTGTTATCTGCAGTTCTTCCCAGCTCCATACCATACTGAAGGTACTTCGAATTATTTTGTCGTATCCAGACTAATACCATGTTAAGTTAAAGTCGTCAACCAACAAAACCACTCGTTACAAATAAGATCTTGTTAGTATTGACTAGTATCTAGCTTATGTTTGACATATATTCCATTTTGATAGCGTTGAAAAAAGCACTATCTCGTTGAAAGGTTCTATAGTACTGCATCTCCTCTTTCTCAACGCATTTCCCTTAAACAATGAAAAGCTCCGATCATCTTAACATGATCCTTTTGTCGACTGATGCTCTTATTACACTCGTAGTCAATTAGTATACCTTATGCTTATCATATTACTAAGCTTTTGTCTTGAACTACACATATAGTATCACTAGCATTCCCAAAGCACAATCGCGTTTCTCTTCTAATTTCCAACTATTTCCCCCCTTTTCATTGCTAATCTCCTTTACGTGATTTTACTGTTACAGTGGACAAAATTCTGAAATCAACGCGATATGTTCATTTTTTTCATTGTTCTCAGGATGGGGACCATATGCATATTTCCGGGCAGTGGA</genome_strand>
        <mrna_strand>CTGATGGTAAAGAT..................................................................................................................GAGTATGATCGGTGGGGAAACGTGAAATGTCATGGTAAAGAAAGTGATATTAAGGAAGGACATAAGAGTTTCCCAAGCGGACATACAAGTG...................................................................................CATCATTTGCTGGTCTCGGGTTTCTATCATTGTATTTGGCTGGGAAGATTAAAGCATTTGATCGACGAGGGCATATAGCTAAACTATGCATAGTTTTTCTTCCTCTTCTAATGGCATCTCTTGTCGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTATTTGCTGGAGGACTGATAG..........................................................................................GTCTTTTCGTTGCAGCGTTCTGTTATCTGCAGTTCTTCCCAGCTCCATACCATACTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGACCATATGCATATTTCCGGGCAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398673" ref_strand="+" ref_description="SGN-E398673 [TUS-44-L4]">
      <seq>cctgatggtaaagattattatgatcggtggggaaacgtgaaatgtcatggtaaagaaagtgatattaaggaaggacataagagtttcccaagcggacatactagtgcatcatttgctggtctcgggtttctatcattgtatttggctgggaagattaaagcatttgatcgacaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="18933" stop="18091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18763" g_stop="18749" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18748" i_stop="18635" i_length="114">
            <donor d_prob="0.837" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18634" g_stop="18544" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="106" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18543" i_stop="18461" i_length="83">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.700" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18460" g_stop="18391" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="176" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E398673" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18763" e_stop="18749"/>
          <exon e_start="18634" e_stop="18544"/>
          <exon e_start="18460" e_stop="18391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGGTAAAGATGTATGTATCCGTTACGTTTATCTGATATGATAGTGAAAGCCATGAAGAATGCATATTGCTTAACTTGGTGCTCGATTATGTAGTAATTTTCGATTGATTTATTTCGTTGTTTAGGAGTATGATCGGTGGGGAAACGTGAAATGTCATGGTAAAGAAAGTGATATTAAGGAAGGACATAAGAGTTTCCCAAGCGGACATACAAGTGGTCTGAATTCTCGTATAATCTTTCTTTCTTTAGTGGGACGACAAAAGAGTCTGATATAACGAAATATGGCTTCTTATTTGCAGCATCATTTGCTGGTCTCGGGTTTCTATCATTGTATTTGGCTGGGAAGATTAAAGCATTTGATCGACGAGG</genome_strand>
        <mrna_strand>CCTGATGGTAAAGAT..................................................................................................................TATTATGATCGGTGGGGAAACGTGAAATGTCATGGTAAAGAAAGTGATATTAAGGAAGGACATAAGAGTTTCCCAAGCGGACATACTAGTG...................................................................................CATCATTTGCTGGTCTCGGGTTTCTATCATTGTATTTGGCTGGGAAGATTAAAGCATTTGATCGACAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401237" ref_strand="+" ref_description="SGN-E401237 [PPC-3-D11]">
      <seq>ttaattttggtgtttttttggattttaggtcctcaagattctctgtaattgaagtattagctgtgcttaaatgggctggaaagataagattaggactgtttttcagggtaatacaaatgagattgagcgcggatgtggacatactattaagtctcatggtttatccgttgcaagaattcacatccatgactggcttatattgctactgcttgtagttatatgtatagttctttatgtcgtcggtccatttcatcggtttgttgggaaggatatgatgactgatctgaaatatccgatgaaagataatacagttccagggtggtctattcctctatatgcagtgttattgcctattatcatcttcgntttcatttatctttggaggaaggacgtttatgatctgcaccacagcattttaggcatcttatttgctatactaattacagctgtaattactgaagccatcaagaatggagtaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20624" stop="18496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20329" g_stop="20224" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.858"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20223" i_stop="19387" i_length="837">
            <donor d_prob="0.958" d_score="0.88"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19386" g_stop="19162" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="331" r_length="225" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19161" i_stop="19035" i_length="127">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19034" g_stop="18947" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="419" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18946" i_stop="18859" i_length="88">
            <donor d_prob="0.912" d_score="0.96"/>
            <acceptor a_prob="0.883" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18858" g_stop="18796" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="482" r_length="63" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E401237" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20329" e_stop="20224"/>
          <exon e_start="19386" e_stop="19162"/>
          <exon e_start="19034" e_stop="18947"/>
          <exon e_start="18858" e_stop="18796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTGTTTTTTTTTTTTGGATTTTAGGTTCTCAAGATTCTCTGTAATTGAAATATTAGCTCTGCTTAAATGAGCTGGAAAAATAAGATTAGAGCTGTATTTCAGGTTTGTTAGCCTTTTTTTGCTTTGTTTGATTTTTAGTTTTTGATTTCTTGTTTTGTTTATGAAATTGTTGTTTCTCTTGCACAACAACATACTCCGCGGGATTTGGGGAGGGTGGTGTGTATGCAACGTGTTACTCGTAATACTGTATTAGGTAGAGATGCTGTTTTTGATAGACACCTATCGAAATAGTAAGAAAAGGAAATACAGTAGTGAAGAAGTCATGTAGAAAATAATAGAGAAACGAACAATAGGAACAACAAATAATACGTTCATCTAATAATCCGCGGATTTTAGGATGAAAAAATCCTTTTCTTTGTAGGAAGAATTTGGGGCATTGAACTATGGTGTTAATGATCTTGATTCAATCGGTATAATTTAGTGCTCGAGGAAGATAATTCGAAAATATATGGATGAACTTTGTAGAAGGGAGAGGAGACTTAACGTAACTGGTAAAGTTGTTGTTATGTAACCAAGAGGTTACTCGTTCGAGCTGTGGAAATAGCCTCTTGCAGAAATGCAGGGTAAGACTTCCTACAGTAGACTCTAACCGGACTAAGATAAGCTTAAATCGACTGATATTGACAGTGAAAATTCATATAGCCGACCCTAACTTGCTTGTTTTTGAGGCATAGATGTTTGTTGCTGCTGTATTCCCAATATGCCTGATGATTAACACTTCGTGTAGTTCAACACGAAGTGCTTGTTCGTTCTGGTTTTGCAAACTTTGCTAAGAGTACTTTTGGTTGTTAGAATGTTTTCGTCGAATGAAGTATCAATTCGAATACTGATTTTGTTTTGCAACAACACGTATTTATATGTCTGTCTCGAATGAAGCAGGGTAATACACATGAGATTGAGCGCGGATGTGGACATACTATTAAGTCTCATGGTTTATCCGTTGCAAGAATTCACATCCACGACTGGCTTATATTGCTACTGCTTGTTGTTATAGCTATAGTTCTTAATGTCATCGGTCCATTTCATCGGTTTGTTGGGAAGGATATGATGACTGATCTGAAATATCCGATGAAAGATAATACAGTTCCAGCGTGGTCTATTCCTGTGAGTATTGTAACGTAAACATTGAAGTAGGCAGAGTGCTGATTACACTTGCAAATTTCAATTTTTTGTAATCAAATCGCGGAGTTTGTAGTGTTTTTCTTTTGTAACTGATTTCTCTAATGAACAGCTATATGCAGTGTTATTGCCTATTATAATCTTCGTTTTCATCTATCTTCGGAGGAAGGACGTTTATGATCTGCACCACAGCATTTTAGGTAATTTTCATTCTAGAGTTTGTAAGGGTTGAAACATCGAGTAGATGTGACTTTACTAATTACGCCTAGGCTTGTCCGAAAATTGCAGGTATTTTATTTGCCATACTAATTACAGCTGTAGTTACTGAAGCCATCAAGAATGGAGTAGGAC</genome_strand>
        <mrna_strand>TTAATTTTGGTGTTTTTTTGGATTTTAGGTCCTCAAGATTCTCTGTAATTGAAGTATTAGCTGTGCTTAAATGGGCTGGAAAGATAAGATTAGGACTGTTTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATACAAATGAGATTGAGCGCGGATGTGGACATACTATTAAGTCTCATGGTTTATCCGTTGCAAGAATTCACATCCATGACTGGCTTATATTGCTACTGCTTGTAGTTATATGTATAGTTCTTTATGTCGTCGGTCCATTTCATCGGTTTGTTGGGAAGGATATGATGACTGATCTGAAATATCCGATGAAAGATAATACAGTTCCAGGGTGGTCTATTCCT...............................................................................................................................CTATATGCAGTGTTATTGCCTATTATCATCTTCGNTTTCATTTATCTTTGGAGGAAGGACGTTTATGATCTGCACCACAGCATTTTAG........................................................................................GCATCTTATTTGCTATACTAATTACAGCTGTAATTACTGAAGCCATCAAGAATGGAGTAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432138" ref_strand="+" ref_description="SGN-E432138 [STM-56-J5]">
      <seq>cttttggtgtttttttggattttaggtcctcaagattctctgtaattgaagtattagctgtgcttaaatgggctggaaagataagattaggactgtttttcagggtaatacaaatgagattgagcgcggatgtggacatactattaagtctcatggtttatccgttgcaagaattcacatccatgactggcttatattgctactgcttgtagttatatgtatagttctttatgtcgtcggtccatttcatcggtttgttgggaaggatatgatgactgatctgaaatatccgatgaaagataatacagttccagggtggtctattcctctatatgcagtgttattgcctattatcatcttcggtttcatttatctttggaggaaggacgtttatgatctgcaccacagcattttaggcatcttatttgctatactaattacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20624" stop="18635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20326" g_stop="20224" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20223" i_stop="19387" i_length="837">
            <donor d_prob="0.958" d_score="0.88"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19386" g_stop="19162" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="328" r_length="225" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19161" i_stop="19035" i_length="127">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19034" g_stop="18947" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="416" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18946" i_stop="18859" i_length="88">
            <donor d_prob="0.912" d_score="0.96"/>
            <acceptor a_prob="0.883" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18858" g_stop="18831" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="444" r_length="28" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E432138" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20326" e_stop="20224"/>
          <exon e_start="19386" e_stop="19162"/>
          <exon e_start="19034" e_stop="18947"/>
          <exon e_start="18858" e_stop="18831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTTTTTTTTTTTGGATTTTAGGTTCTCAAGATTCTCTGTAATTGAAATATTAGCTCTGCTTAAATGAGCTGGAAAAATAAGATTAGAGCTGTATTTCAGGTTTGTTAGCCTTTTTTTGCTTTGTTTGATTTTTAGTTTTTGATTTCTTGTTTTGTTTATGAAATTGTTGTTTCTCTTGCACAACAACATACTCCGCGGGATTTGGGGAGGGTGGTGTGTATGCAACGTGTTACTCGTAATACTGTATTAGGTAGAGATGCTGTTTTTGATAGACACCTATCGAAATAGTAAGAAAAGGAAATACAGTAGTGAAGAAGTCATGTAGAAAATAATAGAGAAACGAACAATAGGAACAACAAATAATACGTTCATCTAATAATCCGCGGATTTTAGGATGAAAAAATCCTTTTCTTTGTAGGAAGAATTTGGGGCATTGAACTATGGTGTTAATGATCTTGATTCAATCGGTATAATTTAGTGCTCGAGGAAGATAATTCGAAAATATATGGATGAACTTTGTAGAAGGGAGAGGAGACTTAACGTAACTGGTAAAGTTGTTGTTATGTAACCAAGAGGTTACTCGTTCGAGCTGTGGAAATAGCCTCTTGCAGAAATGCAGGGTAAGACTTCCTACAGTAGACTCTAACCGGACTAAGATAAGCTTAAATCGACTGATATTGACAGTGAAAATTCATATAGCCGACCCTAACTTGCTTGTTTTTGAGGCATAGATGTTTGTTGCTGCTGTATTCCCAATATGCCTGATGATTAACACTTCGTGTAGTTCAACACGAAGTGCTTGTTCGTTCTGGTTTTGCAAACTTTGCTAAGAGTACTTTTGGTTGTTAGAATGTTTTCGTCGAATGAAGTATCAATTCGAATACTGATTTTGTTTTGCAACAACACGTATTTATATGTCTGTCTCGAATGAAGCAGGGTAATACACATGAGATTGAGCGCGGATGTGGACATACTATTAAGTCTCATGGTTTATCCGTTGCAAGAATTCACATCCACGACTGGCTTATATTGCTACTGCTTGTTGTTATAGCTATAGTTCTTAATGTCATCGGTCCATTTCATCGGTTTGTTGGGAAGGATATGATGACTGATCTGAAATATCCGATGAAAGATAATACAGTTCCAGCGTGGTCTATTCCTGTGAGTATTGTAACGTAAACATTGAAGTAGGCAGAGTGCTGATTACACTTGCAAATTTCAATTTTTTGTAATCAAATCGCGGAGTTTGTAGTGTTTTTCTTTTGTAACTGATTTCTCTAATGAACAGCTATATGCAGTGTTATTGCCTATTATAATCTTCGTTTTCATCTATCTTCGGAGGAAGGACGTTTATGATCTGCACCACAGCATTTTAGGTAATTTTCATTCTAGAGTTTGTAAGGGTTGAAACATCGAGTAGATGTGACTTTACTAATTACGCCTAGGCTTGTCCGAAAATTGCAGGTATTTTATTTGCCATACTAATTACAGC</genome_strand>
        <mrna_strand>CTTTTGGTGTTTTTTTGGATTTTAGGTCCTCAAGATTCTCTGTAATTGAAGTATTAGCTGTGCTTAAATGGGCTGGAAAGATAAGATTAGGACTGTTTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATACAAATGAGATTGAGCGCGGATGTGGACATACTATTAAGTCTCATGGTTTATCCGTTGCAAGAATTCACATCCATGACTGGCTTATATTGCTACTGCTTGTAGTTATATGTATAGTTCTTTATGTCGTCGGTCCATTTCATCGGTTTGTTGGGAAGGATATGATGACTGATCTGAAATATCCGATGAAAGATAATACAGTTCCAGGGTGGTCTATTCCT...............................................................................................................................CTATATGCAGTGTTATTGCCTATTATCATCTTCGGTTTCATTTATCTTTGGAGGAAGGACGTTTATGATCTGCACCACAGCATTTTAG........................................................................................GCATCTTATTTGCTATACTAATTACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200724" ref_strand="+" ref_description="SGN-E200724 [cLEC-9-E5]">
      <seq>gtaattgaaatattagctctgcttaaatgagctggaaaaataagattagagctgtatttcagggtaatacacatgagattgagcgcggatgtggacatactattaagtctcatggtttatccgttgcaagaattcacatccacgactggcttatattgctactgcttgttgttatagctatagttcttaatgtcatcggtccatttcatcggtttgttgggaaggatatgatgactgatctgaaatatccgatgaaagataatacagttccagcgtggtctattcctctatatgcagngttattgcctattataatcttcgttttcatctatcttcggaggaaggacgtttatgatctgcaccacagcattttaggcttgtccgaaaattgcaggtattttatttgccatactaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20585" stop="18534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20285" g_stop="20224" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20223" i_stop="19387" i_length="837">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19386" g_stop="19162" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="287" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19161" i_stop="19035" i_length="127">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19034" g_stop="18947" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="375" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18946" i_stop="18878" i_length="69">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18877" g_stop="18834" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="419" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E200724" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20285" e_stop="20224"/>
          <exon e_start="19386" e_stop="19162"/>
          <exon e_start="19034" e_stop="18947"/>
          <exon e_start="18877" e_stop="18834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTGAAATATTAGCTCTGCTTAAATGAGCTGGAAAAATAAGATTAGAGCTGTATTTCAGGTTTGTTAGCCTTTTTTTGCTTTGTTTGATTTTTAGTTTTTGATTTCTTGTTTTGTTTATGAAATTGTTGTTTCTCTTGCACAACAACATACTCCGCGGGATTTGGGGAGGGTGGTGTGTATGCAACGTGTTACTCGTAATACTGTATTAGGTAGAGATGCTGTTTTTGATAGACACCTATCGAAATAGTAAGAAAAGGAAATACAGTAGTGAAGAAGTCATGTAGAAAATAATAGAGAAACGAACAATAGGAACAACAAATAATACGTTCATCTAATAATCCGCGGATTTTAGGATGAAAAAATCCTTTTCTTTGTAGGAAGAATTTGGGGCATTGAACTATGGTGTTAATGATCTTGATTCAATCGGTATAATTTAGTGCTCGAGGAAGATAATTCGAAAATATATGGATGAACTTTGTAGAAGGGAGAGGAGACTTAACGTAACTGGTAAAGTTGTTGTTATGTAACCAAGAGGTTACTCGTTCGAGCTGTGGAAATAGCCTCTTGCAGAAATGCAGGGTAAGACTTCCTACAGTAGACTCTAACCGGACTAAGATAAGCTTAAATCGACTGATATTGACAGTGAAAATTCATATAGCCGACCCTAACTTGCTTGTTTTTGAGGCATAGATGTTTGTTGCTGCTGTATTCCCAATATGCCTGATGATTAACACTTCGTGTAGTTCAACACGAAGTGCTTGTTCGTTCTGGTTTTGCAAACTTTGCTAAGAGTACTTTTGGTTGTTAGAATGTTTTCGTCGAATGAAGTATCAATTCGAATACTGATTTTGTTTTGCAACAACACGTATTTATATGTCTGTCTCGAATGAAGCAGGGTAATACACATGAGATTGAGCGCGGATGTGGACATACTATTAAGTCTCATGGTTTATCCGTTGCAAGAATTCACATCCACGACTGGCTTATATTGCTACTGCTTGTTGTTATAGCTATAGTTCTTAATGTCATCGGTCCATTTCATCGGTTTGTTGGGAAGGATATGATGACTGATCTGAAATATCCGATGAAAGATAATACAGTTCCAGCGTGGTCTATTCCTGTGAGTATTGTAACGTAAACATTGAAGTAGGCAGAGTGCTGATTACACTTGCAAATTTCAATTTTTTGTAATCAAATCGCGGAGTTTGTAGTGTTTTTCTTTTGTAACTGATTTCTCTAATGAACAGCTATATGCAGTGTTATTGCCTATTATAATCTTCGTTTTCATCTATCTTCGGAGGAAGGACGTTTATGATCTGCACCACAGCATTTTAGGTAATTTTCATTCTAGAGTTTGTAAGGGTTGAAACATCGAGTAGATGTGACTTTACTAATTACGCCTAGGCTTGTCCGAAAATTGCAGGTATTTTATTTGCCATACTAATTAC</genome_strand>
        <mrna_strand>GTAATTGAAATATTAGCTCTGCTTAAATGAGCTGGAAAAATAAGATTAGAGCTGTATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATACACATGAGATTGAGCGCGGATGTGGACATACTATTAAGTCTCATGGTTTATCCGTTGCAAGAATTCACATCCACGACTGGCTTATATTGCTACTGCTTGTTGTTATAGCTATAGTTCTTAATGTCATCGGTCCATTTCATCGGTTTGTTGGGAAGGATATGATGACTGATCTGAAATATCCGATGAAAGATAATACAGTTCCAGCGTGGTCTATTCCT...............................................................................................................................CTATATGCAGNGTTATTGCCTATTATAATCTTCGTTTTCATCTATCTTCGGAGGAAGGACGTTTATGATCTGCACCACAGCATTTTAG.....................................................................GCTTGTCCGAAAATTGCAGGTATTTTATTTGCCATACTAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205208" ref_strand="+" ref_description="SGN-E205208 [cLEC-16-H4]">
      <seq>tctgccattgctaaagtttgaaacttcaaaagggttctcaagattctctgtaattgaaatattagctctgcttaaatgagctggaaaaataagattagagctgtatttcagggtaatacacatgagattgagcgcggatgtggacatactattaagtctcatggtttatccgttgcaagaattcacatccacgactggcttatattgctactgcttgttgttatagctatagttcttaatgtcatcggtccatttcatcggtttgttgggaaggatatgatgactgatctgaaatatccgatgaaagataatacagttccagcgtggtctattcctctatatgcagtgttattgcctattataatcttcgttttcatctatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20822" stop="18687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20522" g_stop="20490" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20489" i_stop="20302" i_length="188">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20301" g_stop="20224" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="111" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20223" i_stop="19387" i_length="837">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19386" g_stop="19162" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="336" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19161" i_stop="19035" i_length="127">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19034" g_stop="18987" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="384" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E205208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20522" e_stop="20490"/>
          <exon e_start="20301" e_stop="20224"/>
          <exon e_start="19386" e_stop="19162"/>
          <exon e_start="19034" e_stop="18987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCCATTGCTAAAGTTTGAAACTTCAAAAGGGTACTTAATTTTCATTGCTTAATGTTTAATTTAACACAATTAATTAATTAACTAATTTCTTGAGAAGTCAAATTTGTTCTTCTTATGATTCTATATTAGTCCTTCTTGAGATCATATCATATCATATATTTGCTAAATAAATATTGTTTCTTTTACTATTTTTGGTGTTTTTTTTTTTTGGATTTTAGGTTCTCAAGATTCTCTGTAATTGAAATATTAGCTCTGCTTAAATGAGCTGGAAAAATAAGATTAGAGCTGTATTTCAGGTTTGTTAGCCTTTTTTTGCTTTGTTTGATTTTTAGTTTTTGATTTCTTGTTTTGTTTATGAAATTGTTGTTTCTCTTGCACAACAACATACTCCGCGGGATTTGGGGAGGGTGGTGTGTATGCAACGTGTTACTCGTAATACTGTATTAGGTAGAGATGCTGTTTTTGATAGACACCTATCGAAATAGTAAGAAAAGGAAATACAGTAGTGAAGAAGTCATGTAGAAAATAATAGAGAAACGAACAATAGGAACAACAAATAATACGTTCATCTAATAATCCGCGGATTTTAGGATGAAAAAATCCTTTTCTTTGTAGGAAGAATTTGGGGCATTGAACTATGGTGTTAATGATCTTGATTCAATCGGTATAATTTAGTGCTCGAGGAAGATAATTCGAAAATATATGGATGAACTTTGTAGAAGGGAGAGGAGACTTAACGTAACTGGTAAAGTTGTTGTTATGTAACCAAGAGGTTACTCGTTCGAGCTGTGGAAATAGCCTCTTGCAGAAATGCAGGGTAAGACTTCCTACAGTAGACTCTAACCGGACTAAGATAAGCTTAAATCGACTGATATTGACAGTGAAAATTCATATAGCCGACCCTAACTTGCTTGTTTTTGAGGCATAGATGTTTGTTGCTGCTGTATTCCCAATATGCCTGATGATTAACACTTCGTGTAGTTCAACACGAAGTGCTTGTTCGTTCTGGTTTTGCAAACTTTGCTAAGAGTACTTTTGGTTGTTAGAATGTTTTCGTCGAATGAAGTATCAATTCGAATACTGATTTTGTTTTGCAACAACACGTATTTATATGTCTGTCTCGAATGAAGCAGGGTAATACACATGAGATTGAGCGCGGATGTGGACATACTATTAAGTCTCATGGTTTATCCGTTGCAAGAATTCACATCCACGACTGGCTTATATTGCTACTGCTTGTTGTTATAGCTATAGTTCTTAATGTCATCGGTCCATTTCATCGGTTTGTTGGGAAGGATATGATGACTGATCTGAAATATCCGATGAAAGATAATACAGTTCCAGCGTGGTCTATTCCTGTGAGTATTGTAACGTAAACATTGAAGTAGGCAGAGTGCTGATTACACTTGCAAATTTCAATTTTTTGTAATCAAATCGCGGAGTTTGTAGTGTTTTTCTTTTGTAACTGATTTCTCTAATGAACAGCTATATGCAGTGTTATTGCCTATTATAATCTTCGTTTTCATCTATCTT</genome_strand>
        <mrna_strand>TCTGCCATTGCTAAAGTTTGAAACTTCAAAAGG............................................................................................................................................................................................GTTCTCAAGATTCTCTGTAATTGAAATATTAGCTCTGCTTAAATGAGCTGGAAAAATAAGATTAGAGCTGTATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATACACATGAGATTGAGCGCGGATGTGGACATACTATTAAGTCTCATGGTTTATCCGTTGCAAGAATTCACATCCACGACTGGCTTATATTGCTACTGCTTGTTGTTATAGCTATAGTTCTTAATGTCATCGGTCCATTTCATCGGTTTGTTGGGAAGGATATGATGACTGATCTGAAATATCCGATGAAAGATAATACAGTTCCAGCGTGGTCTATTCCT...............................................................................................................................CTATATGCAGTGTTATTGCCTATTATAATCTTCGTTTTCATCTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330967" ref_strand="+" ref_description="SGN-E330967 [cTOD-10-N15]">
      <seq>atttataatcgatataaattgtgatagaataattaatgaatattttatttatatttaattaaattttattatcaatatcaaactcttaacgaaaaatcaaaaaaaaagaaagtctttgatctttggaatcttctatccatatttttacaaattcaattttcaaaaataaaagattgtgaactttccatgtaactcggcaccatatttcatatatttgttgaaatttttttatttttattttttgtaagtcttaaaaactgtctcctaaagaagaaaaatcaattattcaaaattcttttcatactttatttttttttcatctttgtcttgtgtagttatggtctgccattgctaaagattgaagcttttatcttcttttagggacccatttgaactattcttttgtttccccagtaaatatctgctataaaaaggtacctttcagtgcttaatctttgatttgacaccattaatttccttttaaaaagtcaaatttattcttattgtgatgtatatttgtcagtcttgaaaatcatatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24097" stop="25237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24397" g_stop="24937" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E330967" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24397" e_stop="24937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATAATCGATATAAATTGTGATAGAATAATTAATTAATATTTTATTTATATTTAATTAAATTTTATTATCAATATCAAACTCTTAACGAAAAATCAAAAAAAAAGAAAGTCTTTGATCTTTGGAATCTTCTATCCATATTTTTACAAATTCAATTTTCAAAAATAAAAGATTGTGAACTTTCCATGTAACTCGGCACCATATTTCATATATTTGTTGAAATTTTTTTATTTTTATTTTTTGTAAGTCTTAAAAACTGTCTCCTAAAGAAGAAAAATCAATTATTCAAAATTCTTTTCATACTTTATTTTTTTTTCATCTTTGTCTTGTGTAGTTATGGTCTGCCATTGCTAAAGATTGAAGCTTTTATCTTCTTTTAGGGACCCATTTGAACTATTCTTTTGTTTCCCCAGTAAATATCTGCTATAAAAAGGTACCTTTCAGTGCTTAATCTTTGATTTGACACCATTAATTTCCTTTTAAAAAGTCAAATTTATTCTTATTGTGATGTATATTTGTCAGTCTTGAAAATCATATCTG</genome_strand>
        <mrna_strand>ATTTATAATCGATATAAATTGTGATAGAATAATTAATGAATATTTTATTTATATTTAATTAAATTTTATTATCAATATCAAACTCTTAACGAAAAATCAAAAAAAAAGAAAGTCTTTGATCTTTGGAATCTTCTATCCATATTTTTACAAATTCAATTTTCAAAAATAAAAGATTGTGAACTTTCCATGTAACTCGGCACCATATTTCATATATTTGTTGAAATTTTTTTATTTTTATTTTTTGTAAGTCTTAAAAACTGTCTCCTAAAGAAGAAAAATCAATTATTCAAAATTCTTTTCATACTTTATTTTTTTTTCATCTTTGTCTTGTGTAGTTATGGTCTGCCATTGCTAAAGATTGAAGCTTTTATCTTCTTTTAGGGACCCATTTGAACTATTCTTTTGTTTCCCCAGTAAATATCTGCTATAAAAAGGTACCTTTCAGTGCTTAATCTTTGATTTGACACCATTAATTTCCTTTTAAAAAGTCAAATTTATTCTTATTGTGATGTATATTTGTCAGTCTTGAAAATCATATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483013" ref_strand="+" ref_description="SGN-E483013 [cSTE-6-J24]">
      <seq>gttgaattttcttaatttttttgaaagtcttaaaaactgtctcctaaagaagaaaaatccatcatacaaatttcttttcatacttttttttccatctttgtcttgtgtagttatggtctgccattgctaaagattgaagctttatcttcttttgggggacccatttgaactattcttttgcttccccagtaaatatatctgctaaaaaaggtcccaagattatctgtgaggttggattctgctctttataattgaagtatcagcagtgcttaaatgggttggaaagacaagattaggactgtgtttcagggtaatagaaatgagattgagctcggatgtggacatactatcaagtctcatggatcatcagttgcaagaattcacttgcatgactggcttatattgctactgcttgtagtaatagaagtagtcctttatgtcgtcggaccatttcaccggtatgttggaaaggatatgatgactgatctgaaatatcccatgaaagataatacggtcccagtgtggtctgttcccctatatgcagttgtattacctattatcatcttccttttcgtttatcttcggaggaaggatgtctatgatctgcaccacagcattctaggcctcttatttgctgtacttattacggctgtaatcacggatgccatcaagaatggagtangccgtccccgaccggactttttctggcgttgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24323" stop="28325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24613" g_stop="24830" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24831" i_stop="25131" i_length="301">
            <donor d_prob="0.946" d_score="0.86"/>
            <acceptor a_prob="0.425" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25132" g_stop="25182" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="252" r_length="45" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25183" i_stop="26217" i_length="1035">
            <donor d_prob="0.000" d_score="0.66"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26218" g_stop="26274" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="309" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26275" i_stop="27220" i_length="946">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27221" g_stop="27445" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="534" r_length="225" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27446" i_stop="27675" i_length="230">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27676" g_stop="27763" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="622" r_length="88" r_score="0.943"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27764" i_stop="27930" i_length="167">
            <donor d_prob="0.873" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27931" g_stop="28025" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="717" r_length="95" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E483013" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24613" e_stop="24830"/>
          <exon e_start="25132" e_stop="25182"/>
          <exon e_start="26218" e_stop="26274"/>
          <exon e_start="27221" e_stop="27445"/>
          <exon e_start="27676" e_stop="27763"/>
          <exon e_start="27931" e_stop="28025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAATTTTTTTATTTTTATTTTTTGTAAGTCTTAAAAACTGTCTCCTAAAGAAGAAAAATCAATTATTCAAAATTCTTTTCATACTTTATTTTTTTTTCATCTTTGTCTTGTGTAGTTATGGTCTGCCATTGCTAAAGATTGAAGCTTTTATCTTCTTTT-AGGGACCCATTTGAACTATTCTTTTGTTTCCCCAGTAAATATCTGCTATAAAAAGGTACCTTTCAGTGCTTAATCTTTGATTTGACACCATTAATTTCCTTTTAAAAAGTCAAATTTATTCTTATTGTGATGTATATTTGTCAGTCTTGAAAATCATATCTGTAAGGGTTTGTATTCTGTCTTAGTTTTGGTGGGTTTTTGTTGTTTCTGTTTCTTTTGATGTGTGATGTACTTTTTTCTCTATTTTCTTGTTGAAAAATTGAGTCTTTAATCAGAAACTTGATGAAAAAATTGAATCTTTATAATTAGTCTAAATTGTTCTTATGAGTTATGATGATAGTATTTGTCATTTCTAGAAGGATTCTTTGCTGATAAGGTCTGTGAGTTTGGATTCTCCATTTTATTCTTTCTTGCCTCTTTGTTAAAAATTTTCCATTCGATGTTCGGTACCTAGGTTTGAGTTTAACTAATTCAAATTCGCATTGCTTAGGGCTCATTTTTGGGTTCTTTCCATATATCGGGCCGAAAAGAGCAGTCTTATCTACTGCACCACATTGTGCGGTGATTCTTTCTTGCCTTATGTACTGCCATTGCTAAAAGATTGAAACTTTAACTTGTGGGGGGACCCAATTGATTATTATTTTGCTTCTTTAGAAAATATTTGCTAAAGAGGGTACTGTTCAATGTTTGATTTAACACCATTAATTTCTTTTAAAAATTTCATTATTGTTCTTATGATGAGGCTGATAGTCAGTTTTGGTGTCATATATCTAGAAGGATTTTTTTCCCTTGTAGAAATGGTGGGGTCTTGGGTTTTTACTTTGATATGTGTTACCTGAGCCGACAGTCTTTCGGAAAACAACCTCTCTACTTCCACGAGATAGGAATAAGGTTGGTGTATATTCTACTTTCCCCCAACCCCACCTGTAGGATTTCACGGGGTATGTTGTTATTTTTATCTTAAAGTCTTTTATTTCATACTGTATTATCTCTCAATTTTCTTCTTTTCTTGCCTTGTGTTCTTCCATTGTTAAAGTTTGAAGTTTTATCTTGTGGGGACCCATTTGAATTATTCTTTTGTTTTCTTAGCAAATATCTGCCAAAAGGGTACCTTTCAGTGCTTAATGTTTAATTTACTACCATTAATTTCTTTCAAAAAGTCAAAAATGGTTCTTAATGATAGTAGTAGTCAGTCTTGATATAATGTAGAAGGATTCTTTGCTGATAAATCATGTTTCCTTTCTTAATCTCGGTTAGTTTTTTTTGGGTTTCTTCTCTTTTAAAGGCTTAGTACTTCACACTGTATTTTTTTCCCTAAATTTTCTTCTGTGACTGAAAGATTGAAGCTTTAAGGCATAAACTTGTGAGAACTCATTTAAAAATCTTGTCTTTTTTTGTTAATTTTGGTGGTTTTTTGGATTTTAGATCCCAAGAGATTGGACTGAAGTATCAACAGTGCTTAAATGGGTTGGAAAGACAAGATTAGAACTGTGTTTCAGGTTTGTTGGCATTTTTGCTGTGTTCTTTTCCCATGTTTTCATGATATCCATATTTTTTTAGTTTGATTTCTGGTTCTGCTTATCAATGCTGTTCCTATTTTCATTCTCTTGCAATTAATCGTTTAGTCGAGGGTCTGGCGGAAACGATCGGTTTACCTCCCAAGGTAGGGGTAAGGTCCATGTTGACTCTTCCTTCCCCATACCCCACTCGTGGGATTACACTGCATGTGTTGTTGCAATTGTCCTTTACTCGTTGGCGTATGGTACTTAATTGTTTTGACTGTCTTATTTAGCAGCAATAATGTTAATGATGAAAAATCCAAATTTTGTATGGGATGAGAAGAATTAGGGGGGTTGAACTGTGGGGTTCTTGATGTAGATTCAATCAGTGCAATTTAGTGCTCCAGTAAGATAATGAACGAAATCTGTAGTGATATTGAAAGATCTTTTAGTGATGATACTGTTTATTTTATTGGTATATCTACAACTATTTCTTTCTGCGGGATATTTCAGCATGTTGTGGTTAAAGAGGTCTTGTTTTCTCCTGAAAACATTTGAACATTACATTTAATCAACAAATTTTTGTTACTGATTCCCATTTCTGTTGATTTGCCAGTTGAAAATATATTAAAAAAACGTTATGTTTACTCTTAATTCTTCTCCTACGCAAAACTGGACCAAGATTAGCGTAAATGGACTGATATGAACAGTGAGGATTTGTAGCCAACCCAACTTGCTTGTTTTTGAGGCATAGATGTTTGTTGTTGCTGTATTCCCATTTCTGAAGATTATGTTGTGTGGTTCAAAACGAAGTGTTTATTCATCTGGATTTGCTAACTTCAAATTACTTTTGCTTGTTAGAATGTGTTATCAATGAACTATCAATTTGTATACTAATTTGTTTTTGCAACCGTACGTATTGATATTACTGTTTCAAATGGAGCAGGGTAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTACTACTGCTTGTAGTAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCCGTGAGTATTCCTTTTGTTTTTTCAACATATACAGTCGAGTATCAATGTAATGTATGTAATGTACGGAAAATTAATTGCTCTAATAGTACATTGAAGCTTCTATTCTACGATAGAATAGAGGTGCAGGAGGAGTGCTGATTACACCGTGCTTGCAAATTTCAAAAAGTTCAAATTTTTGTAATCAAGTCCCGGGGTTTCTAGTGTTATTAACAGATTTCTTTTATGAACAGCTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCGGAGGAGGGACATCTATGATCTGCACCACAGCATTCTAGGTAATTTCCGTTTCAGCGTTATTTTCCCCGTAGTACAGATTGAAATATCGAGTAGAAGTGAATTTTGTCTCTGACTTTGTTTTCATTGCTGTTGTACAAGGAATGTTTTCCTGTTTGGTTTGCCAAGTAACTTTACTAACTGCATTAAACTTGTTCAAAAATTGCAGGCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTT</genome_strand>
        <mrna_strand>GTTGA-ATTTTCTTA-ATTT--TTT-TGAAAGTCTTAAAAACTGTCTCCTAAAGAAGAAAAATCCATCATACAAATTTCTTTTCATAC----TTTTTTTTCCATCTTTGTCTTGTGTAGTTATGGTCTGCCATTGCTAAAGATTGAAGC-TTTATCTTCTTTTGGGGGACCCATTTGAACTATTCTTTTGCTTCCCCAGTAAATATAT-CTGCTAAAA-.............................................................................................................................................................................................................................................................................................................AAGG--TC--CCAAGATTA--TCTGTGAGGTTGGATTCTGCTCTTTATAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGTATCAGCAGTGCTTAAATGGGTTGGAAAGACAAGATTAGGACTGTGTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATAGAAATGAGATTGAGCTCGGATGTGGACATACTATCAAGTCTCATGGATCATCAGTTGCAAGAATTCACTTGCATGACTGGCTTATATTGCTACTGCTTGTAGTAATAGAAGTAGTCCTTTATGTCGTCGGACCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCC......................................................................................................................................................................................................................................CTATATGCAGTTGTATTACCTATTATCATCTTCCTTTTCGTTTATCTTCGGAGGAAGGATGTCTATGATCTGCACCACAGCATTCTAG.......................................................................................................................................................................GCCTCTTATTTGCTGTACTTATTACGGCTGTAATCACGGATGCCATCAAGAATGGAGTANGCCGTCCCCGACCGGACTTTTTCTGGCGTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546148" ref_strand="+" ref_description="SGN-E546148 [TUS-69-F20]">
      <seq>ctttcttagttttggtggatttttgttgtttctgtttcttttgatgtgtactgtatttttctctctattttcttgttgaaaaattgagtctttaatcagaaacttgatgaaaaaattgaatctttataattagtctaaattgttcttatgagttatgatgatagtattagtcatttctagaaggattctttgctgataaggtctgtgagtttggattctccattttattctttcttgcctctttgttaaaaattttcaattcggtgttcggtacctaggtttgagtttgactaattcgaattcgcattgcttagggctcatttttgggttctttccatatatcgggccgaaaagagcagccttatctactgcaccacaattgtggtggttctttcttgccttatgtactgccattgctaaagattgaaacttcaacttgtggggggacccaattgattattattttgcttctttagaaaatatttgctaaaaagggtactgttcaatgtttgatttaacacaattaatttcttttaaaaagtcattattgttcttatgatgaggctgatagacagttttggtgtcatatatctagaaggatatatttccccttgtagaaatggtggggtctttgggtttttactttgatatgtgttacctgagccgacagtctttcggaaaacaacctctctacctccacgagatagggattagggttggtgtacattctacttttcccaaccccacttgtaggattcacggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24652" stop="26016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24952" g_stop="25716" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E546148" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24952" e_stop="25716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCTTAGTTTTGGTGGGTTTTTGTTGTTTCTGTTTCTTTTGATGTGTGATGTACTTTTTTCTCTATTTTCTTGTTGAAAAATTGAGTCTTTAATCAGAAACTTGATGAAAAAATTGAATCTTTATAATTAGTCTAAATTGTTCTTATGAGTTATGATGATAGTATTTGTCATTTCTAGAAGGATTCTTTGCTGATAAGGTCTGTGAGTTTGGATTCTCCATTTTATTCTTTCTTGCCTCTTTGTTAAAAATTTTCCATTCGATGTTCGGTACCTAGGTTTGAGTTTAACTAATTCAAATTCGCATTGCTTAGGGCTCATTTTTGGGTTCTTTCCATATATCGGGCCGAAAAGAGCAGTCTTATCTACTGCACCACATTGTGCGGTGATTCTTTCTTGCCTTATGTACTGCCATTGCTAAAAGATTGAAACTTTAACTTGTGGGGGGACCCAATTGATTATTATTTTGCTTCTTTAGAAAATATTTGCTAAAGAGGGTACTGTTCAATGTTTGATTTAACACCATTAATTTCTTTTAAAAATTTCATTATTGTTCTTATGATGAGGCTGATAGTCAGTTTTGGTGTCATATATCTAGAAGGAT-TTTTTTCCCTTGTAGAAATGGTGGGGTC-TTGGGTTTTTACTTTGATATGTGTTACCTGAGCCGACAGTCTTTCGGAAAACAACCTCTCTACTTCCACGAGATA-GGAATAAGGTTGGTGTATATTCTACTTTCCCCCAACCCCACCTGTAGGATTTCACGGG</genome_strand>
        <mrna_strand>CTTTCTTAGTTTTGGTGGATTTTTGTTGTTTCTGTTTCTTTTGATGTGTACTGTATTTTTCTCTCTATTTTCTTGTTGAAAAATTGAGTCTTTAATCAGAAACTTGATGAAAAAATTGAATCTTTATAATTAGTCTAAATTGTTCTTATGAGTTATGATGATAGTATTAGTCATTTCTAGAAGGATTCTTTGCTGATAAGGTCTGTGAGTTTGGATTCTCCATTTTATTCTTTCTTGCCTCTTTGTTAAAAATTTTCAATTCGGTGTTCGGTACCTAGGTTTGAGTTTGACTAATTCGAATTCGCATTGCTTAGGGCTCATTTTTGGGTTCTTTCCATATATCGGGCCGAAAAGAGCAGCCTTATCTACTGCACCACAAT-TGTGGTGGTTCTTTCTTGCCTTATGTACTGCCATTGCT-AAAGATTGAAACTTCAACTTGTGGGGGGACCCAATTGATTATTATTTTGCTTCTTTAGAAAATATTTGCTAAAAAGGGTACTGTTCAATGTTTGATTTAACACAATTAATTTCTTTTAAAAA-GTCATTATTGTTCTTATGATGAGGCTGATAGACAGTTTTGGTGTCATATATCTAGAAGGATATATTTCCCCTTGTAGAAATGGTGGGGTCTTTGGGTTTTTACTTTGATATGTGTTACCTGAGCCGACAGTCTTTCGGAAAACAACCTCTCTACCTCCACGAGATAGGGATTAGGGTTGGTGTACATTCTACTTT-TCCCAACCCCACTTGTAGGA-TTCACGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356036" ref_strand="+" ref_description="SGN-E356036 [cLHT-21-J8]">
      <seq>tttcttagttttggtggatttttgttgtttctgtttcttttgatgtgtactgtatttttctctctattttcttgttgaaaaattgagtctttaatcagaaacttgatgaaaaaattgaatctttataattagtctaaattgttcttatgagttatgatgatagtattagtcatttctagaaagattctttgctgataaggtctgtgagtttggattctccattttattctttcttgcctctttgttaaaaattttcaattcggtgttcggtacctaggtttgagtttgactaattcgaattcgcattgcttaaggctcatttttgggttctttccatatatcgggccgaaaagagcagccttatctactgcaccacaattgtggtggttctttcttgccttatgtactgccattgctaaagattgaaacttcaacttgtggggggacccaattgattatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24653" stop="25715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24953" g_stop="25415" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E356036" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24953" e_stop="25415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTAGTTTTGGTGGGTTTTTGTTGTTTCTGTTTCTTTTGATGTGTGATGTACTTTTTTCTCTATTTTCTTGTTGAAAAATTGAGTCTTTAATCAGAAACTTGATGAAAAAATTGAATCTTTATAATTAGTCTAAATTGTTCTTATGAGTTATGATGATAGTATTTGTCATTTCTAGAAGGATTCTTTGCTGATAAGGTCTGTGAGTTTGGATTCTCCATTTTATTCTTTCTTGCCTCTTTGTTAAAAATTTTCCATTCGATGTTCGGTACCTAGGTTTGAGTTTAACTAATTCAAATTCGCATTGCTTAGGGCTCATTTTTGGGTTCTTTCCATATATCGGGCCGAAAAGAGCAGTCTTATCTACTGCACCACATTGTGCGGTGATTCTTTCTTGCCTTATGTACTGCCATTGCTAAAAGATTGAAACTTTAACTTGTGGGGGGACCCAATTGATTATTA</genome_strand>
        <mrna_strand>TTTCTTAGTTTTGGTGGATTTTTGTTGTTTCTGTTTCTTTTGATGTGTACTGTATTTTTCTCTCTATTTTCTTGTTGAAAAATTGAGTCTTTAATCAGAAACTTGATGAAAAAATTGAATCTTTATAATTAGTCTAAATTGTTCTTATGAGTTATGATGATAGTATTAGTCATTTCTAGAAAGATTCTTTGCTGATAAGGTCTGTGAGTTTGGATTCTCCATTTTATTCTTTCTTGCCTCTTTGTTAAAAATTTTCAATTCGGTGTTCGGTACCTAGGTTTGAGTTTGACTAATTCGAATTCGCATTGCTTAAGGCTCATTTTTGGGTTCTTTCCATATATCGGGCCGAAAAGAGCAGCCTTATCTACTGCACCACAAT-TGTGGTGGTTCTTTCTTGCCTTATGTACTGCCATTGCT-AAAGATTGAAACTTCAACTTGTGGGGGGACCCAATTGATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461217" ref_strand="+" ref_description="SGN-E461217 [cPRO-7-N17]">
      <seq>ggtataatttagaaggattctttgttgataaatcatgtttcctttcttaattttggtcccaagattatctgtgaggttggattctgctctttataattgaagtatcagcagtgcttaaatgggttggaaagacaagattaggactgtgtttcagggtaatagaaatgagattgagctcggatgtggacatactatcaagtctcatggatcatcagttgcaagaattcacttgcatgactggcttatattgctactgcttgtagtaatagaagtagtcctttatgtcgtcggaccatttcaccggtatgttggaaaggatatgatgactgatctgaaatatcccatgaaagataatacggtcccagtgtggtctgttcccctatatgcagntgtattacctattatcatcttccttttcgtttatcttcggaggaaggatgtctatgatctgcaccacagcattctaggcctcttatttgctgtacttattacggctgtaatcacggatgccatcaagaatggagtaagccgtccccgaccggactttttctggcgntgctttcctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="25673" stop="28332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25973" g_stop="26027" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26028" i_stop="26176" i_length="149">
            <donor d_prob="0.728" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.47"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26177" g_stop="26274" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="154" r_length="99" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26275" i_stop="27220" i_length="946">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27221" g_stop="27445" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="379" r_length="225" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27446" i_stop="27675" i_length="230">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27676" g_stop="27763" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="467" r_length="88" r_score="0.932"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27764" i_stop="27930" i_length="167">
            <donor d_prob="0.873" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27931" g_stop="28032" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="569" r_length="102" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E461217" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25973" e_stop="26027"/>
          <exon e_start="26177" e_stop="26274"/>
          <exon e_start="27221" e_stop="27445"/>
          <exon e_start="27676" e_stop="27763"/>
          <exon e_start="27931" e_stop="28032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATAATGTAGAAGGATTCTTTGCTGATAAATCATGTTTCCTTTCTTAATCTCGGTTAGTTTTTTTTGGGTTTCTTCTCTTTTAAAGGCTTAGTACTTCACACTGTATTTTTTTCCCTAAATTTTCTTCTGTGACTGAAAGATTGAAGCTTTAAGGCATAAACTTGTGAGAACTCATTTAAAAATCTTGTCTTTTTTTGTTAATTTTGGTGGTTTTTTG-GATTTTAGATCCCAAGAGATTGGACTGAAGTATCAACAGTGCTTAAATGGGTTGGAAAGACAAGATTAGAACTGTGTTTCAGGTTTGTTGGCATTTTTGCTGTGTTCTTTTCCCATGTTTTCATGATATCCATATTTTTTTAGTTTGATTTCTGGTTCTGCTTATCAATGCTGTTCCTATTTTCATTCTCTTGCAATTAATCGTTTAGTCGAGGGTCTGGCGGAAACGATCGGTTTACCTCCCAAGGTAGGGGTAAGGTCCATGTTGACTCTTCCTTCCCCATACCCCACTCGTGGGATTACACTGCATGTGTTGTTGCAATTGTCCTTTACTCGTTGGCGTATGGTACTTAATTGTTTTGACTGTCTTATTTAGCAGCAATAATGTTAATGATGAAAAATCCAAATTTTGTATGGGATGAGAAGAATTAGGGGGGTTGAACTGTGGGGTTCTTGATGTAGATTCAATCAGTGCAATTTAGTGCTCCAGTAAGATAATGAACGAAATCTGTAGTGATATTGAAAGATCTTTTAGTGATGATACTGTTTATTTTATTGGTATATCTACAACTATTTCTTTCTGCGGGATATTTCAGCATGTTGTGGTTAAAGAGGTCTTGTTTTCTCCTGAAAACATTTGAACATTACATTTAATCAACAAATTTTTGTTACTGATTCCCATTTCTGTTGATTTGCCAGTTGAAAATATATTAAAAAAACGTTATGTTTACTCTTAATTCTTCTCCTACGCAAAACTGGACCAAGATTAGCGTAAATGGACTGATATGAACAGTGAGGATTTGTAGCCAACCCAACTTGCTTGTTTTTGAGGCATAGATGTTTGTTGTTGCTGTATTCCCATTTCTGAAGATTATGTTGTGTGGTTCAAAACGAAGTGTTTATTCATCTGGATTTGCTAACTTCAAATTACTTTTGCTTGTTAGAATGTGTTATCAATGAACTATCAATTTGTATACTAATTTGTTTTTGCAACCGTACGTATTGATATTACTGTTTCAAATGGAGCAGGGTAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTACTACTGCTTGTAGTAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCCGTGAGTATTCCTTTTGTTTTTTCAACATATACAGTCGAGTATCAATGTAATGTATGTAATGTACGGAAAATTAATTGCTCTAATAGTACATTGAAGCTTCTATTCTACGATAGAATAGAGGTGCAGGAGGAGTGCTGATTACACCGTGCTTGCAAATTTCAAAAAGTTCAAATTTTTGTAATCAAGTCCCGGGGTTTCTAGTGTTATTAACAGATTTCTTTTATGAACAGCTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCGGAGGAGGGACATCTATGATCTGCACCACAGCATTCTAGGTAATTTCCGTTTCAGCGTTATTTTCCCCGTAGTACAGATTGAAATATCGAGTAGAAGTGAATTTTGTCTCTGACTTTGTTTTCATTGCTGTTGTACAAGGAATGTTTTCCTGTTTGGTTTGCCAAGTAACTTTACTAACTGCATTAAACTTGTTCAAAAATTGCAGGCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATG</genome_strand>
        <mrna_strand>GGTATAATTTAGAAGGATTCTTTGTTGATAAATCATGTTTCCTTTCTTAATTTTG.....................................................................................................................................................GTCCCAAGATTATCTGTGAGGTTGGATTCTGCTCTTTATAATTGAAGTATCAGCAGTGCTTAAATGGGTTGGAAAGACAAGATTAGGACTGTGTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATAGAAATGAGATTGAGCTCGGATGTGGACATACTATCAAGTCTCATGGATCATCAGTTGCAAGAATTCACTTGCATGACTGGCTTATATTGCTACTGCTTGTAGTAATAGAAGTAGTCCTTTATGTCGTCGGACCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCC......................................................................................................................................................................................................................................CTATATGCAGNTGTATTACCTATTATCATCTTCCTTTTCGTTTATCTTCGGAGGAAGGATGTCTATGATCTGCACCACAGCATTCTAG.......................................................................................................................................................................GCCTCTTATTTGCTGTACTTATTACGGCTGTAATCACGGATGCCATCAAGAATGGAGTAAGCCGTCCCCGACCGGACTTTTTCTGGCGNTGCTTTCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370328" ref_strand="+" ref_description="SGN-E370328 [TUS-28-O13]">
      <seq>tagaaggattctttgctgataaatcatgtttcctttcttaatctcgatcccaagagattggactgaagtatcaacagtgcttaaatgggttggaaagacaagattagaactgtgtttcagggtaatacaaatgagattgagcttggatgtggacatactattaagtctcatggatcatcagttgcaagaattcacatgcatgactggcttatattactactgcttgtagtaatagaggtagtcctttatgtcattggtccatttcaccggtatgttggaaaggatatgatgactgatctgaaatatcccatgaaagataatacggtcccagtgtggtctgttcccctatatgcagttgtattacctattatcatctttattttcgtttatcttcggaggagggacatctatgatctgcaccacagcattctaggcctcttatttgccgttctaattacggcagtaatcacggatgccatcaagaatggagtaggccgtccccgaccagattttttctggcgttgctttcctgatggtaaagatgagtatgatcagtggggagacgtaaaatgccatggtaaagcaagtgatattaaggaaggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="25682" stop="28631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25982" g_stop="26027" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26028" i_stop="26200" i_length="173">
            <donor d_prob="0.728" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26201" g_stop="26274" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="120" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26275" i_stop="27220" i_length="946">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27221" g_stop="27445" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="345" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27446" i_stop="27675" i_length="230">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27676" g_stop="27763" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="433" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27764" i_stop="27930" i_length="167">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27931" g_stop="28040" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="543" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28270" g_stop="28331" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="605" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E370328" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25982" e_stop="26027"/>
          <exon e_start="26201" e_stop="26274"/>
          <exon e_start="27221" e_stop="27445"/>
          <exon e_start="27676" e_stop="27763"/>
          <exon e_start="27931" e_stop="28040"/>
          <exon e_start="28270" e_stop="28331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGGATTCTTTGCTGATAAATCATGTTTCCTTTCTTAATCTCGGTTAGTTTTTTTTGGGTTTCTTCTCTTTTAAAGGCTTAGTACTTCACACTGTATTTTTTTCCCTAAATTTTCTTCTGTGACTGAAAGATTGAAGCTTTAAGGCATAAACTTGTGAGAACTCATTTAAAAATCTTGTCTTTTTTTGTTAATTTTGGTGGTTTTTTGGATTTTAGATCCCAAGAGATTGGACTGAAGTATCAACAGTGCTTAAATGGGTTGGAAAGACAAGATTAGAACTGTGTTTCAGGTTTGTTGGCATTTTTGCTGTGTTCTTTTCCCATGTTTTCATGATATCCATATTTTTTTAGTTTGATTTCTGGTTCTGCTTATCAATGCTGTTCCTATTTTCATTCTCTTGCAATTAATCGTTTAGTCGAGGGTCTGGCGGAAACGATCGGTTTACCTCCCAAGGTAGGGGTAAGGTCCATGTTGACTCTTCCTTCCCCATACCCCACTCGTGGGATTACACTGCATGTGTTGTTGCAATTGTCCTTTACTCGTTGGCGTATGGTACTTAATTGTTTTGACTGTCTTATTTAGCAGCAATAATGTTAATGATGAAAAATCCAAATTTTGTATGGGATGAGAAGAATTAGGGGGGTTGAACTGTGGGGTTCTTGATGTAGATTCAATCAGTGCAATTTAGTGCTCCAGTAAGATAATGAACGAAATCTGTAGTGATATTGAAAGATCTTTTAGTGATGATACTGTTTATTTTATTGGTATATCTACAACTATTTCTTTCTGCGGGATATTTCAGCATGTTGTGGTTAAAGAGGTCTTGTTTTCTCCTGAAAACATTTGAACATTACATTTAATCAACAAATTTTTGTTACTGATTCCCATTTCTGTTGATTTGCCAGTTGAAAATATATTAAAAAAACGTTATGTTTACTCTTAATTCTTCTCCTACGCAAAACTGGACCAAGATTAGCGTAAATGGACTGATATGAACAGTGAGGATTTGTAGCCAACCCAACTTGCTTGTTTTTGAGGCATAGATGTTTGTTGTTGCTGTATTCCCATTTCTGAAGATTATGTTGTGTGGTTCAAAACGAAGTGTTTATTCATCTGGATTTGCTAACTTCAAATTACTTTTGCTTGTTAGAATGTGTTATCAATGAACTATCAATTTGTATACTAATTTGTTTTTGCAACCGTACGTATTGATATTACTGTTTCAAATGGAGCAGGGTAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTACTACTGCTTGTAGTAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCCGTGAGTATTCCTTTTGTTTTTTCAACATATACAGTCGAGTATCAATGTAATGTATGTAATGTACGGAAAATTAATTGCTCTAATAGTACATTGAAGCTTCTATTCTACGATAGAATAGAGGTGCAGGAGGAGTGCTGATTACACCGTGCTTGCAAATTTCAAAAAGTTCAAATTTTTGTAATCAAGTCCCGGGGTTTCTAGTGTTATTAACAGATTTCTTTTATGAACAGCTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCGGAGGAGGGACATCTATGATCTGCACCACAGCATTCTAGGTAATTTCCGTTTCAGCGTTATTTTCCCCGTAGTACAGATTGAAATATCGAGTAGAAGTGAATTTTGTCTCTGACTTTGTTTTCATTGCTGTTGTACAAGGAATGTTTTCCTGTTTGGTTTGCCAAGTAACTTTACTAACTGCATTAAACTTGTTCAAAAATTGCAGGCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGATGTATGTATCTTACTCTCCCAATCTGCCTGATTCGAGAAGTTTTACCTTTTTCCCCTATTAAGGGTTAGCTTCTTAGTGCATTTCTGTTTGACTTGTGTTTATCTGATAGTGAAAGCGCTTTTCGTGATGAACGATGATCATAACTGTAATACACTTAAAAGTGTATTGCTTAGAGTGGTGCTCAACTCCATTGTAAGACGATTGATTTATTTTGCGGTTCTTTTTTCAGGAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACA</genome_strand>
        <mrna_strand>TAGAAGGATTCTTTGCTGATAAATCATGTTTCCTTTCTTAATCTCG.............................................................................................................................................................................ATCCCAAGAGATTGGACTGAAGTATCAACAGTGCTTAAATGGGTTGGAAAGACAAGATTAGAACTGTGTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTACTACTGCTTGTAGTAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCC......................................................................................................................................................................................................................................CTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCGGAGGAGGGACATCTATGATCTGCACCACAGCATTCTAG.......................................................................................................................................................................GCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGAT.....................................................................................................................................................................................................................................GAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271989" ref_strand="+" ref_description="SGN-E271989 [cLEM-8-K6]">
      <seq>tagaaagattctttgctgataaatcatgtttcctttcttaatctcgatcccaagagattggactgaagtatcaacagtgcttaaatgggttggaaagacaagattagaactgtgtttcagggtaatacaaatgagattgagcttggatgtggacatactattaagtctcatggatcatcagttgcaagaattcacatgcatgactggcttatattactactgcttgtagtaatagaggtagtcctttatgtcattggtccatttcaccggtatgttggaaaggatatgatgactgatctgaaatatcccatgaaagataatacggtcccagtgtggtctgttcccctatatgcagttgtattacctattatcatctttattttcgtttatcttcggaggagggacatctatgatctgcaccacagcattctaggcctcttatttgccgttctaattacggcagtaatcacggatgccatcaagaatggagtaagccgtccccgaccagattttttctggcgttgctttcctgatggtaaagatgagtatgatcagtggggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="25682" stop="28589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25982" g_stop="26027" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26028" i_stop="26200" i_length="173">
            <donor d_prob="0.728" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26201" g_stop="26274" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="120" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26275" i_stop="27220" i_length="946">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27221" g_stop="27445" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="345" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27446" i_stop="27675" i_length="230">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27676" g_stop="27763" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="433" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27764" i_stop="27930" i_length="167">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27931" g_stop="28040" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="543" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28270" g_stop="28289" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="563" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E271989" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25982" e_stop="26027"/>
          <exon e_start="26201" e_stop="26274"/>
          <exon e_start="27221" e_stop="27445"/>
          <exon e_start="27676" e_stop="27763"/>
          <exon e_start="27931" e_stop="28040"/>
          <exon e_start="28270" e_stop="28289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGGATTCTTTGCTGATAAATCATGTTTCCTTTCTTAATCTCGGTTAGTTTTTTTTGGGTTTCTTCTCTTTTAAAGGCTTAGTACTTCACACTGTATTTTTTTCCCTAAATTTTCTTCTGTGACTGAAAGATTGAAGCTTTAAGGCATAAACTTGTGAGAACTCATTTAAAAATCTTGTCTTTTTTTGTTAATTTTGGTGGTTTTTTGGATTTTAGATCCCAAGAGATTGGACTGAAGTATCAACAGTGCTTAAATGGGTTGGAAAGACAAGATTAGAACTGTGTTTCAGGTTTGTTGGCATTTTTGCTGTGTTCTTTTCCCATGTTTTCATGATATCCATATTTTTTTAGTTTGATTTCTGGTTCTGCTTATCAATGCTGTTCCTATTTTCATTCTCTTGCAATTAATCGTTTAGTCGAGGGTCTGGCGGAAACGATCGGTTTACCTCCCAAGGTAGGGGTAAGGTCCATGTTGACTCTTCCTTCCCCATACCCCACTCGTGGGATTACACTGCATGTGTTGTTGCAATTGTCCTTTACTCGTTGGCGTATGGTACTTAATTGTTTTGACTGTCTTATTTAGCAGCAATAATGTTAATGATGAAAAATCCAAATTTTGTATGGGATGAGAAGAATTAGGGGGGTTGAACTGTGGGGTTCTTGATGTAGATTCAATCAGTGCAATTTAGTGCTCCAGTAAGATAATGAACGAAATCTGTAGTGATATTGAAAGATCTTTTAGTGATGATACTGTTTATTTTATTGGTATATCTACAACTATTTCTTTCTGCGGGATATTTCAGCATGTTGTGGTTAAAGAGGTCTTGTTTTCTCCTGAAAACATTTGAACATTACATTTAATCAACAAATTTTTGTTACTGATTCCCATTTCTGTTGATTTGCCAGTTGAAAATATATTAAAAAAACGTTATGTTTACTCTTAATTCTTCTCCTACGCAAAACTGGACCAAGATTAGCGTAAATGGACTGATATGAACAGTGAGGATTTGTAGCCAACCCAACTTGCTTGTTTTTGAGGCATAGATGTTTGTTGTTGCTGTATTCCCATTTCTGAAGATTATGTTGTGTGGTTCAAAACGAAGTGTTTATTCATCTGGATTTGCTAACTTCAAATTACTTTTGCTTGTTAGAATGTGTTATCAATGAACTATCAATTTGTATACTAATTTGTTTTTGCAACCGTACGTATTGATATTACTGTTTCAAATGGAGCAGGGTAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTACTACTGCTTGTAGTAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCCGTGAGTATTCCTTTTGTTTTTTCAACATATACAGTCGAGTATCAATGTAATGTATGTAATGTACGGAAAATTAATTGCTCTAATAGTACATTGAAGCTTCTATTCTACGATAGAATAGAGGTGCAGGAGGAGTGCTGATTACACCGTGCTTGCAAATTTCAAAAAGTTCAAATTTTTGTAATCAAGTCCCGGGGTTTCTAGTGTTATTAACAGATTTCTTTTATGAACAGCTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCGGAGGAGGGACATCTATGATCTGCACCACAGCATTCTAGGTAATTTCCGTTTCAGCGTTATTTTCCCCGTAGTACAGATTGAAATATCGAGTAGAAGTGAATTTTGTCTCTGACTTTGTTTTCATTGCTGTTGTACAAGGAATGTTTTCCTGTTTGGTTTGCCAAGTAACTTTACTAACTGCATTAAACTTGTTCAAAAATTGCAGGCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGATGTATGTATCTTACTCTCCCAATCTGCCTGATTCGAGAAGTTTTACCTTTTTCCCCTATTAAGGGTTAGCTTCTTAGTGCATTTCTGTTTGACTTGTGTTTATCTGATAGTGAAAGCGCTTTTCGTGATGAACGATGATCATAACTGTAATACACTTAAAAGTGTATTGCTTAGAGTGGTGCTCAACTCCATTGTAAGACGATTGATTTATTTTGCGGTTCTTTTTTCAGGAGTATGATCAGTGGGGAGA</genome_strand>
        <mrna_strand>TAGAAAGATTCTTTGCTGATAAATCATGTTTCCTTTCTTAATCTCG.............................................................................................................................................................................ATCCCAAGAGATTGGACTGAAGTATCAACAGTGCTTAAATGGGTTGGAAAGACAAGATTAGAACTGTGTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTACTACTGCTTGTAGTAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCC......................................................................................................................................................................................................................................CTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCGGAGGAGGGACATCTATGATCTGCACCACAGCATTCTAG.......................................................................................................................................................................GCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAAGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGAT.....................................................................................................................................................................................................................................GAGTATGATCAGTGGGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690154" ref_strand="+" ref_description="SGN-E690154 [LH_Ea02M08]">
      <seq>cgatagattggactgaagtatcaaccgtgcttaaatgggtcggaaagacaacattaaaactgtgtttcagggaaatacaaatgagattgagcttggatgtggacatactattaattctcatggatcatcagttgcaagaattcacatgcatgactggcttatgttactactccttgtaccaatagaggtagtcctttatgtcattggtccatttcaccggtatgttggaaaggatatgatgactgatctgaaatatcccatgaaagataatacggtcccaatgtggtctgttcccctatatgcagttgtattacctattatcatctttattttcgtttatcttcagaggagggacatctgtgatctgcaccacagcattctaggcctcttatttgccgctctaattactgcagtaatcacagatgccatcaagaatggagtaggccgtccccgaccatattttttctggcgttgctttcctgatggtaaagatgagtatgatcatcggggagacgtaaaatgccatggcacagcaagtgatattaacgaaggacatagcagcttcccaagcgggcatacctcatggtcattagctggtctcgggtttctatcgttgaatttaccacggaagattaaagcatttgatcgccgagggcatgtggcaaaactatgcatagttcttcttcctctcctaatggcatctcttgttggggtctcacgggtggatgactactggcatcattgacgacacgacttcactggagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="25905" stop="28934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26205" g_stop="26274" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26275" i_stop="27220" i_length="946">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27221" g_stop="27445" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="295" r_length="225" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27446" i_stop="27675" i_length="230">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27676" g_stop="27763" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="383" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27764" i_stop="27930" i_length="167">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27931" g_stop="28040" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="493" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229">
            <donor d_prob="0.910" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28270" g_stop="28360" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="584" r_length="91" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28361" i_stop="28452" i_length="92">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.952" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28453" g_stop="28634" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="766" r_length="182" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E690154" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26205" e_stop="26274"/>
          <exon e_start="27221" e_stop="27445"/>
          <exon e_start="27676" e_stop="27763"/>
          <exon e_start="27931" e_stop="28040"/>
          <exon e_start="28270" e_stop="28360"/>
          <exon e_start="28453" e_stop="28634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGATTGGACTGAAGTATCAACAGTGCTTAAATGGGTTGGAAAGACAAGATTAGAACTGTGTTTCAGGTTTGTTGGCATTTTTGCTGTGTTCTTTTCCCATGTTTTCATGATATCCATATTTTTTTAGTTTGATTTCTGGTTCTGCTTATCAATGCTGTTCCTATTTTCATTCTCTTGCAATTAATCGTTTAGTCGAGGGTCTGGCGGAAACGATCGGTTTACCTCCCAAGGTAGGGGTAAGGTCCATGTTGACTCTTCCTTCCCCATACCCCACTCGTGGGATTACACTGCATGTGTTGTTGCAATTGTCCTTTACTCGTTGGCGTATGGTACTTAATTGTTTTGACTGTCTTATTTAGCAGCAATAATGTTAATGATGAAAAATCCAAATTTTGTATGGGATGAGAAGAATTAGGGGGGTTGAACTGTGGGGTTCTTGATGTAGATTCAATCAGTGCAATTTAGTGCTCCAGTAAGATAATGAACGAAATCTGTAGTGATATTGAAAGATCTTTTAGTGATGATACTGTTTATTTTATTGGTATATCTACAACTATTTCTTTCTGCGGGATATTTCAGCATGTTGTGGTTAAAGAGGTCTTGTTTTCTCCTGAAAACATTTGAACATTACATTTAATCAACAAATTTTTGTTACTGATTCCCATTTCTGTTGATTTGCCAGTTGAAAATATATTAAAAAAACGTTATGTTTACTCTTAATTCTTCTCCTACGCAAAACTGGACCAAGATTAGCGTAAATGGACTGATATGAACAGTGAGGATTTGTAGCCAACCCAACTTGCTTGTTTTTGAGGCATAGATGTTTGTTGTTGCTGTATTCCCATTTCTGAAGATTATGTTGTGTGGTTCAAAACGAAGTGTTTATTCATCTGGATTTGCTAACTTCAAATTACTTTTGCTTGTTAGAATGTGTTATCAATGAACTATCAATTTGTATACTAATTTGTTTTTGCAACCGTACGTATTGATATTACTGTTTCAAATGGAGCAGGGTAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTACTACTGCTTGTAGTAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCCGTGAGTATTCCTTTTGTTTTTTCAACATATACAGTCGAGTATCAATGTAATGTATGTAATGTACGGAAAATTAATTGCTCTAATAGTACATTGAAGCTTCTATTCTACGATAGAATAGAGGTGCAGGAGGAGTGCTGATTACACCGTGCTTGCAAATTTCAAAAAGTTCAAATTTTTGTAATCAAGTCCCGGGGTTTCTAGTGTTATTAACAGATTTCTTTTATGAACAGCTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCGGAGGAGGGACATCTATGATCTGCACCACAGCATTCTAGGTAATTTCCGTTTCAGCGTTATTTTCCCCGTAGTACAGATTGAAATATCGAGTAGAAGTGAATTTTGTCTCTGACTTTGTTTTCATTGCTGTTGTACAAGGAATGTTTTCCTGTTTGGTTTGCCAAGTAACTTTACTAACTGCATTAAACTTGTTCAAAAATTGCAGGCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGATGTATGTATCTTACTCTCCCAATCTGCCTGATTCGAGAAGTTTTACCTTTTTCCCCTATTAAGGGTTAGCTTCTTAGTGCATTTCTGTTTGACTTGTGTTTATCTGATAGTGAAAGCGCTTTTCGTGATGAACGATGATCATAACTGTAATACACTTAAAAGTGTATTGCTTAGAGTGGTGCTCAACTCCATTGTAAGACGATTGATTTATTTTGCGGTTCTTTTTTCAGGAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACATAAGAGCTTCCCAAGCGGGCATACCTCATGTATGTAGCTCAACTTTCTCCGTTTCCACTATCCATGTACATTAAATCAGGATTTCCGAGATATCAAGAAAATTTGAGTTCTTCTTTTGCAGGGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGA</genome_strand>
        <mrna_strand>CGATAGATTGGACTGAAGTATCAACCGTGCTTAAATGGGTCGGAAAGACAACATTAAAACTGTGTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAATTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATGTTACTACTCCTTGTACCAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAATGTGGTCTGTTCCC......................................................................................................................................................................................................................................CTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCAGAGGAGGGACATCTGTGATCTGCACCACAGCATTCTAG.......................................................................................................................................................................GCCTCTTATTTGCCGCTCTAATTACTGCAGTAATCACAGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCATATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGAT.....................................................................................................................................................................................................................................GAGTATGATCATCGGGGAGACGTAAAATGCCATGGCACAGCAAGTGATATTAACGAAGGACATAGCAGCTTCCCAAGCGGGCATACCTCAT............................................................................................GGTCATTAGCTGGTCTCGGGTTTCTATCGTTGAATTTACCACGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGGGTGGATGACTACTGGCATCATTGACGACACGACTTCACTGGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611129" ref_strand="+" ref_description="SGN-E611129 [60876]">
      <seq>gtaatacgaatgagattgagctcggatgtggacatactattaagtctcatggatcatcagttgcaagaattcacatgcatgactggcttatattgctactgcttgtagtaatagaagtagtcctttatgtcgtcggtccatttcaccggtatgttggaaaggatatgatgactgatctgaaatatcccatgaaagataatacggtcccagtgtggtctgttcccctatatgcagttgtattacctattatcatcttctttttcgtttatcttcggaggaaggacgtctatgatctgcaccacagcattctaggcctcttatttgctgtacttattacggctgtaatcacggatgccatcaagaatggagtaggccgtccccgaccggactttttctggcgttgctttcctgatggtaaagatgagtatgatcagtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="26922" stop="28354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27222" g_stop="27445" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27446" i_stop="27675" i_length="230">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27676" g_stop="27763" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="312" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27764" i_stop="27930" i_length="167">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27931" g_stop="28040" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="422" r_length="110" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229">
            <donor d_prob="0.910" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28270" g_stop="28285" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="438" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E611129" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27222" e_stop="27445"/>
          <exon e_start="27676" e_stop="27763"/>
          <exon e_start="27931" e_stop="28040"/>
          <exon e_start="28270" e_stop="28285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTACTACTGCTTGTAGTAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCCGTGAGTATTCCTTTTGTTTTTTCAACATATACAGTCGAGTATCAATGTAATGTATGTAATGTACGGAAAATTAATTGCTCTAATAGTACATTGAAGCTTCTATTCTACGATAGAATAGAGGTGCAGGAGGAGTGCTGATTACACCGTGCTTGCAAATTTCAAAAAGTTCAAATTTTTGTAATCAAGTCCCGGGGTTTCTAGTGTTATTAACAGATTTCTTTTATGAACAGCTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCGGAGGAGGGACATCTATGATCTGCACCACAGCATTCTAGGTAATTTCCGTTTCAGCGTTATTTTCCCCGTAGTACAGATTGAAATATCGAGTAGAAGTGAATTTTGTCTCTGACTTTGTTTTCATTGCTGTTGTACAAGGAATGTTTTCCTGTTTGGTTTGCCAAGTAACTTTACTAACTGCATTAAACTTGTTCAAAAATTGCAGGCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGATGTATGTATCTTACTCTCCCAATCTGCCTGATTCGAGAAGTTTTACCTTTTTCCCCTATTAAGGGTTAGCTTCTTAGTGCATTTCTGTTTGACTTGTGTTTATCTGATAGTGAAAGCGCTTTTCGTGATGAACGATGATCATAACTGTAATACACTTAAAAGTGTATTGCTTAGAGTGGTGCTCAACTCCATTGTAAGACGATTGATTTATTTTGCGGTTCTTTTTTCAGGAGTATGATCAGTGGG</genome_strand>
        <mrna_strand>GTAATACGAATGAGATTGAGCTCGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTGCTACTGCTTGTAGTAATAGAAGTAGTCCTTTATGTCGTCGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCC......................................................................................................................................................................................................................................CTATATGCAGTTGTATTACCTATTATCATCTTCTTTTTCGTTTATCTTCGGAGGAAGGACGTCTATGATCTGCACCACAGCATTCTAG.......................................................................................................................................................................GCCTCTTATTTGCTGTACTTATTACGGCTGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCGGACTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGAT.....................................................................................................................................................................................................................................GAGTATGATCAGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693994" ref_strand="+" ref_description="SGN-E693994 [LH_Ea02M08](-)">
      <seq>aggcctcttatttgccgttctaattacggcagtaatcacggatgccatcaagaatggagtaggccgtccccgaccagattttttctggcgttgctttcctgatggtaaagatgagtatgatcagtggggagacgtaaaatgccatggtaaagcaagtgatattaaggaaggacataagagcttcccaagcgggcatacctcatggtcatttgctggtctcgggtttctatcgttgtatttagcagggaagattaaagcatttgatcgccgagggcatgtggcaaaactatgcatagttcttcttcctctcctaatggcatctcttgttggggtctcacgtgtggatgactactggcatcattggcaagacgtcttcactggaggaatgataggcctttttgttgctacattctgttacctgcagttcttccctgctccataccatactgaaggatggggaccatatgcatatttccgggctgtggaggaggttcgtagtagcagacaacacgtccaccctactaacggaggattagagacagaacatcctgaggtacaactgaatcagcgaacgggtacaactcccaatccatttgaggatgtggagtatggcagaatgtgaaacataagacactgcttatatttttgctcaaagtattttaattggcacagtttgttattttcttgtgaatatttatgtctgtttttgttaagtattttagctatagggaactatttgattactgaaataattgtgtccagtggtaagttctttttttttgtgtgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27629" stop="29783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27929" g_stop="28040" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28270" g_stop="28360" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="203" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28361" i_stop="28452" i_length="92">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28453" g_stop="28641" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="392" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84">
            <donor d_prob="0.863" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28726" g_stop="28785" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="452" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29180" g_stop="29515" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="787" r_length="335" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="788" polyA_stop="798"/>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E693994" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27929" e_stop="28040"/>
          <exon e_start="28270" e_stop="28360"/>
          <exon e_start="28453" e_stop="28641"/>
          <exon e_start="28726" e_stop="28785"/>
          <exon e_start="29180" e_stop="29515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGATGTATGTATCTTACTCTCCCAATCTGCCTGATTCGAGAAGTTTTACCTTTTTCCCCTATTAAGGGTTAGCTTCTTAGTGCATTTCTGTTTGACTTGTGTTTATCTGATAGTGAAAGCGCTTTTCGTGATGAACGATGATCATAACTGTAATACACTTAAAAGTGTATTGCTTAGAGTGGTGCTCAACTCCATTGTAAGACGATTGATTTATTTTGCGGTTCTTTTTTCAGGAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACATAAGAGCTTCCCAAGCGGGCATACCTCATGTATGTAGCTCAACTTTCTCCGTTTCCACTATCCATGTACATTAAATCAGGATTTCCGAGATATCAAGAAAATTTGAGTTCTTCTTTTGCAGGGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAGGTTCGTCTTGAAATTCTACATTAACATTAAACGAGGGCTGCGTATCATTTGATGAATACTAACTCCATGTGTTTCACATTTCAGGCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAGGTACGTTCTTCACTAATCTCCTCCCGCTTTAATTACATTTTGTGTAGTAATTCCTCGCGCTTAAACAAACCTTTCTCCAATCTTTTCGATTTTGTTATATCCTTAGTACTTCAAAATATTCCGTATCCAGACTAATACCAAGTTAATTACACCCTTTCGTTGAAAGGATCTATACATCTGCCCTTTCTCAACTCATTTCTTGAAACAAAGAAGATCCAATCATCTAAGCCTGATCTGATCATATATTCCAATCGCATTTTCTTCTAATTTCCTATGGATTTGCTAATGATCTAGGAGAAGGCATTGCACCAAATCTCCTCTCCGCAACTTTACTGTTACAGTGGACATAACTCTGAAATTAACCCGATATGTTCATTTTTCTCGCTGTTCTCAGGATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTTTTTTTTGTGTGTGT</genome_strand>
        <mrna_strand>AGGCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGAT.....................................................................................................................................................................................................................................GAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACATAAGAGCTTCCCAAGCGGGCATACCTCAT............................................................................................GGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTCTTCACTGGAGGAATGATAG....................................................................................GCCTTTTTGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACAACACGTCCACCCTACTAACGGAGGATTAGAGACAGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAAACATAAGACACTGCTTATATTTTTGCTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTCTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATAATTGTGTCCAGTGGTAAGTTCTTTTTTTT-TGTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546147" ref_strand="+" ref_description="SGN-E546147 [TUS-69-F20](-)">
      <seq>gttgctttcctgatggtaaagatgagtatgatcagtggggagacgtaaaatgccatggtaaagcaagtgatattaaggaaggacatagagctttcccaagcgggcatacctcatggtcatttgctggtctcgggtttctatcgttgtatttagcagggaagattaaagcatttgatcgccgagggcatgtggcaaaactatgcatagttcttcttcctctcctaatggcatctcttgttggggtctcacgtgtggatgactactggcatcattggcaagacgtcttcactggaggaatgataggcctttttgttgctacattctgttacctgcagttcttccctgctccataccatactgaaggatggggaccatatgcgtatttccgggctgtggaggaggttcgtggtagtagaccacacgtccaccctactaacggaggattagagacagaacatcctgaggtacaactgaatcagcgaacgggtacaactcccaatccatttgaggatgtggagtatggcagaatgtgaaacataagacactgcttatattttttctcaaagtattttaattggcacagtttgttattttcttgtgaatatttatgtctgtttttgttaagtattttagctatagggaactatttgattactgaaattgttttaatcagtggtaagttctttttttttgtgtgtaatttgttgcataattagtttattggttgataattttgtcattatttctttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27718" stop="29870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28018" g_stop="28040" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229">
            <donor d_prob="0.910" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28270" g_stop="28360" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="114" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28361" i_stop="28452" i_length="92">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28453" g_stop="28641" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="303" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84">
            <donor d_prob="0.863" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28726" g_stop="28785" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="363" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29180" g_stop="29569" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="750" r_length="387" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="751" polyA_stop="761"/>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E546147" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28018" e_stop="28040"/>
          <exon e_start="28270" e_stop="28360"/>
          <exon e_start="28453" e_stop="28641"/>
          <exon e_start="28726" e_stop="28785"/>
          <exon e_start="29180" e_stop="29569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTTTCCTGATGGTAAAGATGTATGTATCTTACTCTCCCAATCTGCCTGATTCGAGAAGTTTTACCTTTTTCCCCTATTAAGGGTTAGCTTCTTAGTGCATTTCTGTTTGACTTGTGTTTATCTGATAGTGAAAGCGCTTTTCGTGATGAACGATGATCATAACTGTAATACACTTAAAAGTGTATTGCTTAGAGTGGTGCTCAACTCCATTGTAAGACGATTGATTTATTTTGCGGTTCTTTTTTCAGGAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACATAAGAGC-TTCCCAAGCGGGCATACCTCATGTATGTAGCTCAACTTTCTCCGTTTCCACTATCCATGTACATTAAATCAGGATTTCCGAGATATCAAGAAAATTTGAGTTCTTCTTTTGCAGGGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAGGTTCGTCTTGAAATTCTACATTAACATTAAACGAGGGCTGCGTATCATTTGATGAATACTAACTCCATGTGTTTCACATTTCAGGCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAGGTACGTTCTTCACTAATCTCCTCCCGCTTTAATTACATTTTGTGTAGTAATTCCTCGCGCTTAAACAAACCTTTCTCCAATCTTTTCGATTTTGTTATATCCTTAGTACTTCAAAATATTCCGTATCCAGACTAATACCAAGTTAATTACACCCTTTCGTTGAAAGGATCTATACATCTGCCCTTTCTCAACTCATTTCTTGAAACAAAGAAGATCCAATCATCTAAGCCTGATCTGATCATATATTCCAATCGCATTTTCTTCTAATTTCCTATGGATTTGCTAATGATCTAGGAGAAGGCATTGCACCAAATCTCCTCTCCGCAACTTTACTGTTACAGTGGACATAACTCTGAAATTAACCCGATATGTTCATTTTTCTCGCTGTTCTCAGGATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTTTTTTTTGTGTGTGTGTAATTTGTTGCATAATTAGTTTATTGGTTGATAATTTTGTCATTATTTCTTTC</genome_strand>
        <mrna_strand>GTTGCTTTCCTGATGGTAAAGAT.....................................................................................................................................................................................................................................GAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACAT-AGAGCTTTCCCAAGCGGGCATACCTCAT............................................................................................GGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTCTTCACTGGAGGAATGATAG....................................................................................GCCTTTTTGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGACCATATGCGTATTTCCGGGCTGTGGAGGAGGTTCGTGGTAGTAGACCACACGTCCACCCTACTAACGGAGGATTAGAGACAGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAAACATAAGACACTGCTTATATTTTTTCTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTCTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGTAAGTTC-TTTTTTT-T-TGTGTGTAATTTGTTGCATAATTAGTTTATTGGTTGATAATTTTGTCATTATTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292632" ref_strand="+" ref_description="SGN-E292632 [cLET-11-I15]">
      <seq>ctgatggtaaagatgagtatgatcggtggggaaacgtgaaatgtcatggtaaagaaagtgatattaaggaaggacataagagtttcccaagcggacatacaagtgcatcatttgctggtctcgggtttctatcattgtatttggctgggaagattaaagcatttgatcgacgagggcatatagctaaactatgcatagtttttcttcctcttctaatggcatctcttgtcggggtctcacgtgtggatgactactggcatcattggcaagacgtatttgctggaggactgataggtcttttcgttgcagcgttctgttatctgcagttcttcccagctccataccatactgaaggatggggaccatatgcatatttccgggcagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27968" stop="29513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28027" g_stop="28040" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229">
            <donor d_prob="0.910" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28270" g_stop="28360" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="105" r_length="91" r_score="0.868"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28361" i_stop="28452" i_length="92">
            <donor d_prob="0.977" d_score="0.86"/>
            <acceptor a_prob="0.952" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28453" g_stop="28641" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="294" r_length="189" r_score="0.915"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84">
            <donor d_prob="0.863" d_score="0.92"/>
            <acceptor a_prob="0.916" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28726" g_stop="28785" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="354" r_length="60" r_score="0.900"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29180" g_stop="29213" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="388" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E292632" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28027" e_stop="28040"/>
          <exon e_start="28270" e_stop="28360"/>
          <exon e_start="28453" e_stop="28641"/>
          <exon e_start="28726" e_stop="28785"/>
          <exon e_start="29180" e_stop="29213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGTAAAGATGTATGTATCTTACTCTCCCAATCTGCCTGATTCGAGAAGTTTTACCTTTTTCCCCTATTAAGGGTTAGCTTCTTAGTGCATTTCTGTTTGACTTGTGTTTATCTGATAGTGAAAGCGCTTTTCGTGATGAACGATGATCATAACTGTAATACACTTAAAAGTGTATTGCTTAGAGTGGTGCTCAACTCCATTGTAAGACGATTGATTTATTTTGCGGTTCTTTTTTCAGGAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACATAAGAGCTTCCCAAGCGGGCATACCTCATGTATGTAGCTCAACTTTCTCCGTTTCCACTATCCATGTACATTAAATCAGGATTTCCGAGATATCAAGAAAATTTGAGTTCTTCTTTTGCAGGGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAGGTTCGTCTTGAAATTCTACATTAACATTAAACGAGGGCTGCGTATCATTTGATGAATACTAACTCCATGTGTTTCACATTTCAGGCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAGGTACGTTCTTCACTAATCTCCTCCCGCTTTAATTACATTTTGTGTAGTAATTCCTCGCGCTTAAACAAACCTTTCTCCAATCTTTTCGATTTTGTTATATCCTTAGTACTTCAAAATATTCCGTATCCAGACTAATACCAAGTTAATTACACCCTTTCGTTGAAAGGATCTATACATCTGCCCTTTCTCAACTCATTTCTTGAAACAAAGAAGATCCAATCATCTAAGCCTGATCTGATCATATATTCCAATCGCATTTTCTTCTAATTTCCTATGGATTTGCTAATGATCTAGGAGAAGGCATTGCACCAAATCTCCTCTCCGCAACTTTACTGTTACAGTGGACATAACTCTGAAATTAACCCGATATGTTCATTTTTCTCGCTGTTCTCAGGATGGGGACCATATGCATATTTCCGGGCTGTGGA</genome_strand>
        <mrna_strand>CTGATGGTAAAGAT.....................................................................................................................................................................................................................................GAGTATGATCGGTGGGGAAACGTGAAATGTCATGGTAAAGAAAGTGATATTAAGGAAGGACATAAGAGTTTCCCAAGCGGACATACAAGTG............................................................................................CATCATTTGCTGGTCTCGGGTTTCTATCATTGTATTTGGCTGGGAAGATTAAAGCATTTGATCGACGAGGGCATATAGCTAAACTATGCATAGTTTTTCTTCCTCTTCTAATGGCATCTCTTGTCGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTATTTGCTGGAGGACTGATAG....................................................................................GTCTTTTCGTTGCAGCGTTCTGTTATCTGCAGTTCTTCCCAGCTCCATACCATACTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGACCATATGCATATTTCCGGGCAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410190" ref_strand="-" ref_description="SGN-E410190 [PPI-16-E20]">
      <seq>atggtaaagatgagtatgatcagtggggagacgtgaaatgccatggtaaagcaagtgatattaaggaaggacataagagcttcccaagcgggcatacctcatggtcatttgctggtctcgggtttctatcattgtatttagcagggaagattaaagcatttgatcgacgagggcatgtggcaaaattatgcatagttcttcttcctctcctaatggcatctcttgttggggtctcacgtgtggatgactactggcatcattggcaagacgtgttcactggaggaatgataggccttttcgttgcaacattctgttacctgcagttcttccctgctccataccatactgaaggatggggaccatatgcatatttccgggcagtggaggaggttcgtagtagcagacaacacgtccactctactaacggaggattagagatagaacgtcccgaggtacaactgaatcagcgatccagtacaactcccaatccatttgaggatgtggagtatggcagaatgtgagacacaacactgtgcacttgtgcttatatttgttcaaagtattttagttggcacagtttgttattttcttgtgaatatttaagtctgtttttgttatgtattttagctttagggaactatttgattactgaaattgtttaatcagtgttaagttctttttcaaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27968" stop="29804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28030" g_stop="28040" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229">
            <donor d_prob="0.910" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28270" g_stop="28360" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="102" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28361" i_stop="28452" i_length="92">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28453" g_stop="28641" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="291" r_length="189" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28726" g_stop="28785" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="351" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29180" g_stop="29491" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="668" r_length="317" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="683" polyA_stop="704"/>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E410190" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410190" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28030" e_stop="28040"/>
          <exon e_start="28270" e_stop="28360"/>
          <exon e_start="28453" e_stop="28641"/>
          <exon e_start="28726" e_stop="28785"/>
          <exon e_start="29180" e_stop="29491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTAAAGATGTATGTATCTTACTCTCCCAATCTGCCTGATTCGAGAAGTTTTACCTTTTTCCCCTATTAAGGGTTAGCTTCTTAGTGCATTTCTGTTTGACTTGTGTTTATCTGATAGTGAAAGCGCTTTTCGTGATGAACGATGATCATAACTGTAATACACTTAAAAGTGTATTGCTTAGAGTGGTGCTCAACTCCATTGTAAGACGATTGATTTATTTTGCGGTTCTTTTTTCAGGAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACATAAGAGCTTCCCAAGCGGGCATACCTCATGTATGTAGCTCAACTTTCTCCGTTTCCACTATCCATGTACATTAAATCAGGATTTCCGAGATATCAAGAAAATTTGAGTTCTTCTTTTGCAGGGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAGGTTCGTCTTGAAATTCTACATTAACATTAAACGAGGGCTGCGTATCATTTGATGAATACTAACTCCATGTGTTTCACATTTCAGGCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAGGTACGTTCTTCACTAATCTCCTCCCGCTTTAATTACATTTTGTGTAGTAATTCCTCGCGCTTAAACAAACCTTTCTCCAATCTTTTCGATTTTGTTATATCCTTAGTACTTCAAAATATTCCGTATCCAGACTAATACCAAGTTAATTACACCCTTTCGTTGAAAGGATCTATACATCTGCCCTTTCTCAACTCATTTCTTGAAACAAAGAAGATCCAATCATCTAAGCCTGATCTGATCATATATTCCAATCGCATTTTCTTCTAATTTCCTATGGATTTGCTAATGATCTAGGAGAAGGCATTGCACCAAATCTCCTCTCCGCAACTTTACTGTTACAGTGGACATAACTCTGAAATTAACCCGATATGTTCATTTTTCTCGCTGTTCTCAGGATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTG--C-T-T--ATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTG</genome_strand>
        <mrna_strand>ATGGTAAAGAT.....................................................................................................................................................................................................................................GAGTATGATCAGTGGGGAGACGTGAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACATAAGAGCTTCCCAAGCGGGCATACCTCAT............................................................................................GGTCATTTGCTGGTCTCGGGTTTCTATCATTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGACGAGGGCATGTGGCAAAATTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAG....................................................................................GCCTTTTCGTTGCAACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGACCATATGCATATTTCCGGGCAGTGGAGGAGGTTCGTAGTAGCAGACAACACGTCCACTCTACTAACGGAGGATTAGAGATAGAACGTCCCGAGGTACAACTGAATCAGCGATCCAGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACACAACACTGTGCACTTGTGCTTATATTTGTTCAAAGTATTTTAGTTGGCACAGTTTGTTATTTTCTTGTGAATATTTAAGTCTGTTTTTGTTATGTATTTTAGCTTTAGGGAACTATTTGATTACTGAAATTG-TTTAATCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370327" ref_strand="+" ref_description="SGN-E370327 [TUS-28-O13](-)">
      <seq>agcttcccaagcgggcatacctcatggtcatttgctggtctcgggtttctatcgttgtatttagcagggaagattaaagcatttgatcgccgagggcatgtggcaaaactatgcatagttcttcttcctctcctaatggcatctcttgttggggtctcacgtgtggatgactactggcatcattggcaagacgtgttcactggaggaatgataggccttttcgttgctacattctgttacctgcagttcttccctgctccataccatactgaaggatggggaccatatgcatatttccgggctgtggaggaggttcgtagtagcagaccacacgtccaccctactaatggaggattagagacggaacatcctgaggtacaactgaatcagcgaacgggtacaactcccaatccatttgaggatgtggagtatggcagaatgtgagacataggaaactgcttatatttttgttcaaagtattttaattggcacagtttgttattttcttgtgaatatttatgtttgtttttgttaagtattttagctatagggaactatttgattactgaaattgttttaatcagtggcaagttcttttttttgtgtgtgtgtaatttgttgcataattagtttattggttgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="28036" stop="29850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28336" g_stop="28360" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28361" i_stop="28452" i_length="92">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28453" g_stop="28641" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="214" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28726" g_stop="28785" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="274" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29180" g_stop="29549" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="644" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E370327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28336" e_stop="28360"/>
          <exon e_start="28453" e_stop="28641"/>
          <exon e_start="28726" e_stop="28785"/>
          <exon e_start="29180" e_stop="29549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCCCAAGCGGGCATACCTCATGTATGTAGCTCAACTTTCTCCGTTTCCACTATCCATGTACATTAAATCAGGATTTCCGAGATATCAAGAAAATTTGAGTTCTTCTTTTGCAGGGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAGGTTCGTCTTGAAATTCTACATTAACATTAAACGAGGGCTGCGTATCATTTGATGAATACTAACTCCATGTGTTTCACATTTCAGGCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAGGTACGTTCTTCACTAATCTCCTCCCGCTTTAATTACATTTTGTGTAGTAATTCCTCGCGCTTAAACAAACCTTTCTCCAATCTTTTCGATTTTGTTATATCCTTAGTACTTCAAAATATTCCGTATCCAGACTAATACCAAGTTAATTACACCCTTTCGTTGAAAGGATCTATACATCTGCCCTTTCTCAACTCATTTCTTGAAACAAAGAAGATCCAATCATCTAAGCCTGATCTGATCATATATTCCAATCGCATTTTCTTCTAATTTCCTATGGATTTGCTAATGATCTAGGAGAAGGCATTGCACCAAATCTCCTCTCCGCAACTTTACTGTTACAGTGGACATAACTCTGAAATTAACCCGATATGTTCATTTTTCTCGCTGTTCTCAGGATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTTTTTTTTGTGTGTGTGTAATTTGTTGCATAATTAGTTTATTGGTTGATA</genome_strand>
        <mrna_strand>AGCTTCCCAAGCGGGCATACCTCAT............................................................................................GGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAG....................................................................................GCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTTTTTTTTGTGTGTGTGTAATTTGTTGCATAATTAGTTTATTGGTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555236" ref_strand="+" ref_description="SGN-E555236 [cTSC-6-N2]">
      <seq>aggacacactatgtttgagctttcagggcatgctggttaaactatgcatagttcttcttcctctcctaatggcatctcttgttggggtctcacgtgtggatgactactggcatcattggcaagacgtgttcactggaggaatgataagccttttcgttgctacattctgttacctgcagttcttccctgctccataccatactgaaggatggggaccatatgcatatttccgggctgtggaggaggttcgtagtagcagaccacacgtccaccctactaatggaggattagagacggaacatcctgaggtacaactgaatcagcgaacgggtacaactcccaatccatttgaggatgtggagtatggcagaatgtgagacataggaaactgcttatatttttgttcaaagtattttaattggcacagtttgttattttcttgtgaatatttatgtttgtttttgttaagtattttagctatagggaactatttgattactgaaattgttttaatcagtggcaagttctttttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="28220" stop="51894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28493" g_stop="28641" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84">
            <donor d_prob="0.863" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28726" g_stop="28785" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="207" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29180" g_stop="29501" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="529" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29502" i_stop="29615" i_length="114">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29616" g_stop="29632" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="546" r_length="17" r_score="0.765"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E555236" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28493" e_stop="28641"/>
          <exon e_start="28726" e_stop="28785"/>
          <exon e_start="29180" e_stop="29501"/>
          <exon e_start="29616" e_stop="29632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAAGATTAAAGCATTTGATCGCCGAGGGCATG-TGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAGGTTCGTCTTGAAATTCTACATTAACATTAAACGAGGGCTGCGTATCATTTGATGAATACTAACTCCATGTGTTTCACATTTCAGGCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAGGTACGTTCTTCACTAATCTCCTCCCGCTTTAATTACATTTTGTGTAGTAATTCCTCGCGCTTAAACAAACCTTTCTCCAATCTTTTCGATTTTGTTATATCCTTAGTACTTCAAAATATTCCGTATCCAGACTAATACCAAGTTAATTACACCCTTTCGTTGAAAGGATCTATACATCTGCCCTTTCTCAACTCATTTCTTGAAACAAAGAAGATCCAATCATCTAAGCCTGATCTGATCATATATTCCAATCGCATTTTCTTCTAATTTCCTATGGATTTGCTAATGATCTAGGAGAAGGCATTGCACCAAATCTCCTCTCCGCAACTTTACTGTTACAGTGGACATAACTCTGAAATTAACCCGATATGTTCATTTTTCTCGCTGTTCTCAGGATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTTTTTTTTGTGTGTGTGTAATTTGTTGCATAATTAGTTTATTGGTTGATAATTTTGTCATTATTTCTTTCATTCCTTGAGCTAAAGATCATTTTGTTAGTATGGAATTGATTTTAGTACTTAAAAAGGAAAAA</genome_strand>
        <mrna_strand>AGGACACACTA-TG--TTTGAGCTTTCAGGGCATGCTGGTTAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAA....................................................................................GCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTT..................................................................................................................TTTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411655" ref_strand="-" ref_description="SGN-E411655 [STM-15-E9]">
      <seq>catttgatcgccgagggcatgtggcaaaactatgcatagtttttcttcctctcctaatggcatctcttgttggggtctcacgtgtggatgactactggcatcattggcaagacgtgttcactggaggaatgataggccttttcgttgctacgttctgttacctgcagttcttccctgctccataccatactgaaggatggggaccttatgcatatttccgggcagtggaggaggttcgtagtagcagacaacacgtccaccctactaacggaggattagagatagaacgtcccgaggtacaactgaatcagcgatccagtacaactcccaatccatttgaggatgtggagtatggcagaatgtgagacataagacagtgtacacttatgcttatatttgttcaaagtattttagttggcacagtttgttattttcttgtgaatatttaagtctgtttttgttaagtattttagctttagggaactatttgattactgaaattgtttaatcagtgttaagttctttttctttttctgtgtaatttgttgcataattagttcaattggttgatgattttgtaattatttctttctttgagctaaagatcactttgttaatctggaaaaaaaaaaaaaaaaaaaactgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="28207" stop="29872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28507" g_stop="28641" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28726" g_stop="28785" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="195" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29180" g_stop="29597" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="616" r_length="421" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="643"/>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E411655" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411655" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28507" e_stop="28641"/>
          <exon e_start="28726" e_stop="28785"/>
          <exon e_start="29180" e_stop="29597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAGGTTCGTCTTGAAATTCTACATTAACATTAAACGAGGGCTGCGTATCATTTGATGAATACTAACTCCATGTGTTTCACATTTCAGGCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAGGTACGTTCTTCACTAATCTCCTCCCGCTTTAATTACATTTTGTGTAGTAATTCCTCGCGCTTAAACAAACCTTTCTCCAATCTTTTCGATTTTGTTATATCCTTAGTACTTCAAAATATTCCGTATCCAGACTAATACCAAGTTAATTACACCCTTTCGTTGAAAGGATCTATACATCTGCCCTTTCTCAACTCATTTCTTGAAACAAAGAAGATCCAATCATCTAAGCCTGATCTGATCATATATTCCAATCGCATTTTCTTCTAATTTCCTATGGATTTGCTAATGATCTAGGAGAAGGCATTGCACCAAATCTCCTCTCCGCAACTTTACTGTTACAGTGGACATAACTCTGAAATTAACCCGATATGTTCATTTTTCTCGCTGTTCTCAGGATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTG----CTTA----TATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTTTTTTTTGTGTGTGTGTAATTTGTTGCATAATTAGTT-TATTGGTTGATAATTTTGTCATTATTTCTTTCATTCCTTGAGCTAAAGATCATTTTGTTA</genome_strand>
        <mrna_strand>CATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTTTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAG....................................................................................GCCTTTTCGTTGCTACGTTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGACCTTATGCATATTTCCGGGCAGTGGAGGAGGTTCGTAGTAGCAGACAACACGTCCACCCTACTAACGGAGGATTAGAGATAGAACGTCCCGAGGTACAACTGAATCAGCGATCCAGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAAGACAGTGTACACTTATGCTTATATTTGTTCAAAGTATTTTAGTTGGCACAGTTTGTTATTTTCTTGTGAATATTTAAGTCTGTTTTTGTTAAGTATTTTAGCTTTAGGGAACTATTTGATTACTGAAATTG-TTTAATCAGTGTTAAGTTCTTTTTCTT-TTTCTGTGTAATTTGTTGCATAATTAGTTCAATTGGTTGATGATTTTGTAATTATTTCTTTC--T--TTGAGCTAAAGATCACTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555094" ref_strand="+" ref_description="SGN-E555094 [cTSC-6-G18]">
      <seq>catgtggcaaaactatgcatagttcttcttcctctcctaatggcatctcttgttggggtctcacgtgtggatgactactggcatcattggcaagacgtgttcactggaggaatgataggccttttcgttgctacattctgttacctgcagttcttccctgctccataccatactgaaggatggggaccatatgcatatttccgggctgtggaggaggttcgtagtagcagaccacacgtccaccctactaatggaggattagagacggaacatcctgaggtacaactgaatcagcgaacgggtacaactcccaatccatttgaggatgtggagtatggcagaatgtgagacataggaaactgcttatatttttgttcaaagtattttaattggcacagtttgttattttcttgtgaatatttatgtttgtttttgttaagtattttagctatagggaactatttgattactgaaattgttttaatcagtggcaagttctttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccggggggggggggccccccccccccccccccctggggggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="28224" stop="69538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28524" g_stop="28641" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28726" g_stop="28785" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="178" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29180" g_stop="29505" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="504" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29506" i_stop="29615" i_length="110">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29616" g_stop="29632" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="521" r_length="17" r_score="0.706"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29633" i_stop="30119" i_length="487">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30120" g_stop="30203" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="605" r_length="84" r_score="0.452"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E555094" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28524" e_stop="28641"/>
          <exon e_start="28726" e_stop="28785"/>
          <exon e_start="29180" e_stop="29505"/>
          <exon e_start="29616" e_stop="29632"/>
          <exon e_start="30120" e_stop="30203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAGGTTCGTCTTGAAATTCTACATTAACATTAAACGAGGGCTGCGTATCATTTGATGAATACTAACTCCATGTGTTTCACATTTCAGGCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAGGTACGTTCTTCACTAATCTCCTCCCGCTTTAATTACATTTTGTGTAGTAATTCCTCGCGCTTAAACAAACCTTTCTCCAATCTTTTCGATTTTGTTATATCCTTAGTACTTCAAAATATTCCGTATCCAGACTAATACCAAGTTAATTACACCCTTTCGTTGAAAGGATCTATACATCTGCCCTTTCTCAACTCATTTCTTGAAACAAAGAAGATCCAATCATCTAAGCCTGATCTGATCATATATTCCAATCGCATTTTCTTCTAATTTCCTATGGATTTGCTAATGATCTAGGAGAAGGCATTGCACCAAATCTCCTCTCCGCAACTTTACTGTTACAGTGGACATAACTCTGAAATTAACCCGATATGTTCATTTTTCTCGCTGTTCTCAGGATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTTTTTTTTGTGTGTGTGTAATTTGTTGCATAATTAGTTTATTGGTTGATAATTTTGTCATTATTTCTTTCATTCCTTGAGCTAAAGATCATTTTGTTAGTATGGAATTGATTTTAGTACTTAAAAAGGAAAAATGAAGGTGCTATAACCCAAGTTGCGAGAAAATCTCAAATATCTGGAGTTTCTTTTTGTATATTATATGGATAATCCGATTCGCAAGGACCATGATTGGAAATTGATCAGTCATCTTCCTCTGAGGAATAGTCGAAATAAAAGTGTATAGTACGATGAAAGTTATAAGTTGTGTTTGGTTTGGGGGTGGGGGTGGGTCTATCGTTGGCCTCTATGTTAGAATCTGATTTGAAAGGACACAAACAAGTTGCTACTGACTGCCTCAATGGTAGAATATGACCTGAAAGGATACCAACAAGTTGCTATTGAACGTGAACAAAGTCAAGTGATGGAATCAACTGAATATAATTAGTTTTTTTTTACGTCAATCTTCTTTATTGATGTCGTATCCATATCAAATTCTCCCAAAATATATTACGTTTGTAGAATTTGACACACATTCATTGACGTAGCAACACAAGTTATAACATGTAAATTCTAGTTAGGTTCAAAATACAAAAATAAAATAAAAAATCCGACAATCGACACATATGACGTGTGTTTATACATCTGGCTGTGTAGCCTAGTGATCAA</genome_strand>
        <mrna_strand>CATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAG....................................................................................GCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTTTTTT..............................................................................................................TAAAAAAAAAAAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCGGGGGGGGGGGGCCCCCCCCCCCCCCCCCCCTGGGGGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326743" ref_strand="+" ref_description="SGN-E326743 [cTOC-25-I17]">
      <seq>ttttttacacacacacaaaaaaaagaacttgccactgattaaaacaatttcagtaatcaaatagttccctatagctaaaatacttaacaaaaacaaacataaatattcacaagaaaataacaaactgtgccaattaaaatactttgaacaaaaatataagcagtttcctatgtctcacattctgccatactccacatcctcaaatggattgggagttgtacccgttcgctgattcagttgtacctcaggatgttccgtctctaatcctccattagtagggtggacgtgtggtctgctactacgaacctcctccacagcccggaaatatgcatatggtccccatcctgagaacagcgagaaaaatgaacatatcgggttaatttcagagttatgtccactgtaacagtaaagttgcggagaggagatttggtgcaatgccttctcctagatcattagcaaatccataggaaattagaagaaaatgcgattggaatatatgatcagatcaggcttagatgattggatcttctttgtttcaagaaatgagttgagaaagggcagatgtatagatcctttcaacgaaagggtgtaattaacttggtattagtctggatacggaatattttgaagtactaaggatataacaaaatcgaaaagattggagaaaggtttgtttaagcgcgaggaattactacacaaaatgtaattaaagcgggaggagattagtgaagaacgtaccttcagtatggtatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29819" stop="28470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29523" g_stop="28770" g_length="754"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E326743" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29523" e_stop="28770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTACACACACACAAAAAAAAGAACTTGCCACTGATTAAAACAATTTCAGTAATCAAATAGTTCCCTATAGCTAAAATACTTAACAAAAACAAACATAAATATTCACAAGAAAATAACAAACTGTGCCAATTAAAATACTTTGAACAAAAATATAAGCAGTTTCCTATGTCTCACATTCTGCCATACTCCACATCCTCAAATGGATTGGGAGTTGTACCCGTTCGCTGATTCAGTTGTACCTCAGGATGTTCCGTCTCTAATCCTCCATTAGTAGGGTGGACGTGTGGTCTGCTACTACGAACCTCCTCCACAGCCCGGAAATATGCATATGGTCCCCATCCTGAGAACAGCGAGAAAAATGAACATATCGGGTTAATTTCAGAGTTATGTCCACTGTAACAGTAAAGTTGCGGAGAGGAGATTTGGTGCAATGCCTTCTCCTAGATCATTAGCAAATCCATAGGAAATTAGAAGAAAATGCGATTGGAATATATGATCAGATCAGGCTTAGATGATTGGATCTTCTTTGTTTCAAGAAATGAGTTGAGAAAGGGCAGATGTATAGATCCTTTCAACGAAAGGGTGTAATTAACTTGGTATTAGTCTGGATACGGAATATTTTGAAGTACTAAGGATATAACAAAATCGAAAAGATTGGAGAAAGGTTTGTTTAAGCGCGAGGAATTACTACACAAAATGTAATTAAAGCGGGAGGAGATTAGTGAAGAACGTACCTTCAGTATGGTATGG</genome_strand>
        <mrna_strand>TTTTTTACACACACACAAAAAAAAGAACTTGCCACTGATTAAAACAATTTCAGTAATCAAATAGTTCCCTATAGCTAAAATACTTAACAAAAACAAACATAAATATTCACAAGAAAATAACAAACTGTGCCAATTAAAATACTTTGAACAAAAATATAAGCAGTTTCCTATGTCTCACATTCTGCCATACTCCACATCCTCAAATGGATTGGGAGTTGTACCCGTTCGCTGATTCAGTTGTACCTCAGGATGTTCCGTCTCTAATCCTCCATTAGTAGGGTGGACGTGTGGTCTGCTACTACGAACCTCCTCCACAGCCCGGAAATATGCATATGGTCCCCATCCTGAGAACAGCGAGAAAAATGAACATATCGGGTTAATTTCAGAGTTATGTCCACTGTAACAGTAAAGTTGCGGAGAGGAGATTTGGTGCAATGCCTTCTCCTAGATCATTAGCAAATCCATAGGAAATTAGAAGAAAATGCGATTGGAATATATGATCAGATCAGGCTTAGATGATTGGATCTTCTTTGTTTCAAGAAATGAGTTGAGAAAGGGCAGATGTATAGATCCTTTCAACGAAAGGGTGTAATTAACTTGGTATTAGTCTGGATACGGAATATTTTGAAGTACTAAGGATATAACAAAATCGAAAAGATTGGAGAAAGGTTTGTTTAAGCGCGAGGAATTACTACACAAAATGTAATTAAAGCGGGAGGAGATTAGTGAAGAACGTACCTTCAGTATGGTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618292" ref_strand="+" ref_description="SGN-E618292 [68968]">
      <seq>catttttgacgcttcctttgcttttgcttttcctcttcacctttatctctccaattatttgaatttccagaagcaaaacgaaagcgttttctccttcgcattctcttctccagatcgtttttcagttggtaaaatgccagagattcagttgggcgcccatacattcagaaaccagggagtggaagtagcaagatttcacatgcatgactggcttattctcttcctacttgtggtgatagatataattttaaatgtgatagaaccgtttcatcgttttgttggatctgacatgatgacagatttaagataccctttgaaagacaataccattcccttttgggctgttccaattattgctataatcttccctttgctagtcatacttgtcttttacttcatcagaaaggatgtctacgacgtgcatcaagctatattaggattgttgtactctgtactcatcacctctgttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31133" stop="33800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31433" g_stop="31556" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31557" i_stop="32931" i_length="1375">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32932" g_stop="33155" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="349" r_length="224" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33156" i_stop="33272" i_length="117">
            <donor d_prob="0.691" d_score="0.96"/>
            <acceptor a_prob="0.040" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33360" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="437" r_length="88" r_score="0.932"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33361" i_stop="33465" i_length="105">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.784" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33466" g_stop="33500" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="472" r_length="35" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E618292" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31433" e_stop="31556"/>
          <exon e_start="32932" e_stop="33155"/>
          <exon e_start="33273" e_stop="33360"/>
          <exon e_start="33466" e_stop="33500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTGACGCTTCGTTTGCTTTTGCTTTTCCTCTTCACCTTTATCTCTCCAATTATTTGAATTTACAGAAGCAAAACGAAAGCATTTTCTCCTCCGCATTCTCTTCTCCAGATCG-TTTTCAGGTATTTTTTTTTGAGTTTTCGGTATTTTTATCAATGTACTTTTTGTAGTTTTTTTCAGTTTCCGCAACGGCGAAGTTTTTGTTACTTTTTCCGTTGATTAGTGTTGTTTAATATTAGTATAACAGTTCCTTAAGCAGTTCGGTTTGGTTACTGAGGCGGCGTAGCGGCGGCGGCGGCGGCGGAGGAGTAAACTGTGATTTTGCTGGTGTATGTGTTTTGGTTTGTTTAGAATAGTGCGAGTTATGTGGAAATTTAAGTATATGTAAGTGTTAGGAAAATGAGGAATTGAAGTTTGATGAAATTAGTGAGTAATTTGTGAAGACATTGTAGTAGCAGCTATTTATGGATAAAAAACAGTTTCATAACCTAATTCTATTTATTATTTTCTGTATAGTTATTTCGTACTGGTTTATAGAGCATATAGTTTGAATTGAAGCATGTTGTTGGTATATTAGTGGATGAGATGCTAACCGGTTGCTGCTGGTGTATGTGTGAGGAAAAAGTAACTTTTGAATTTGCTGTTGTACCGGTTTAGTTAGAATAGTATGAGGAATTGTCGAATTTTGTGAAAATTTGAGTTTATGGAAGTGGTATTGTTTGGAAAATGCTGAGCCTGGTAACGTAAGCTTGTAACTCAAGTGAAGGCATTAAGGTGATGAGGACAATTTAAAAAAAAATGAAAAAAATTATTGTAAGGAAAATGAGGATATGAAGTGCTAAGTGATGAAATTATAGAGTAATTTGAGAAGACGTTGTATTAGCTGGATTTATTTGTAGATTTTTTTGTATAGTAGATAGAGTTTAAATTGAAGCATGTTGTTGGCTGGGGAGAATTTAGCGTTTATGGTGTATGTGAACTTGTGGTGTTTCTGCAAAACTAGATATTCTATGTGTATATTTTTTAGAATTGATCTAATAATTACCTTCTGGCACTCATGCTACAAAAAGGTTTTTTGCCGCACTTGGTTGAAAACTAAATTATTTAGTAAAACCAAAAACAACGAGGTAGGGGAACTAATAAGTTAACAACTGAAGGTGAGTTCTTTCATCATGCTCAATCACACGAGGCTTAGTTTTTTTTGTTTTTTTTTGTATTTGTATGTGCTTGCCTCAAATCTTAAAACGCTGCAGACATTATCTCGTCTTCTAGTAATTTCTTTGTAGCCATGTTATCATTATTTTCTTTTCTCATAAGTGCCCCTTTGTTCTCTGTCTTAAGTGCAACATAGAATATATCGAGTCTCATTGATATAAAGTGAACATTATGAATCTTATCTTGCTTTTCTGTATATGTGGTACAAAAGGCTGTCTCTGTTTTTGTTACTTATTATCAATGTCATGCAAGTTTTACTAACACCTATTTTTGTTCTATTAGTTGGTAAAATGCCAGAGATTCAGTTGGGTGCCCATACGTTCAGAAATCAGGGAGTGGAAGTAGCAAGATTTCACATGCATGACTGGTTTATTCTCTTCGTACTTGTGGTGATAGATATAATTTTAAATGTGATAGAACCATTTCACCGCTTTGTTGGATCTGACATGATGACAGATTTAAGTTACCCTTTGAAAGACAATACCATTCCCTTTTGGGCTGTTCCGGTAAGTGCACTTTAGGACAAATTGGGTTTGAGATATTACATAGTTACGAAGAAGTATGCGTGTTTTTTGTACATCTAAGTAGGCATTTTATAATCCATGTCTTTTCCTTGTAAACAGATTATTGCTATAGTCTTACCTTTGCTAGTCATACTTGTGTTTTACTTCATCAGGAAGGATGTTTACGATGTGCATCAAGCTATATTAGGTATTCTTTGCCCCTTATGTGACTATCAGCTTTTGCCTGGCAGCAAGTTATATTGGCTGGTATAGATAACTGGATCAGATTGATAACTTCGTGTGCTTTGTTCAGGATTGTTGTACTCTGTACTCATCAGCTCTGTTCTT</genome_strand>
        <mrna_strand>CATTTTTGACGCTTCCTTTGCTTTTGCTTTTCCTCTTCACCTTTATCTCTCCAATTATTTGAATTTCCAGAAGCAAAACGAAAGCGTTTTCTCCTTCGCATTCTCTTCTCCAGATCGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTAAAATGCCAGAGATTCAGTTGGGCGCCCATACATTCAGAAACCAGGGAGTGGAAGTAGCAAGATTTCACATGCATGACTGGCTTATTCTCTTCCTACTTGTGGTGATAGATATAATTTTAAATGTGATAGAACCGTTTCATCGTTTTGTTGGATCTGACATGATGACAGATTTAAGATACCCTTTGAAAGACAATACCATTCCCTTTTGGGCTGTTCCA.....................................................................................................................ATTATTGCTATAATCTTCCCTTTGCTAGTCATACTTGTCTTTTACTTCATCAGAAAGGATGTCTACGACGTGCATCAAGCTATATTAG.........................................................................................................GATTGTTGTACTCTGTACTCATCACCTCTGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581770" ref_strand="+" ref_description="SGN-E581770 [7399]">
      <seq>ttttgacgcttcctttgcttttgcttttcctcttcacctttatctctccaattatttgaatttcccagaagcaaaacgaaagcgttttctccttcgcattctcttctccaggatcgtttttcagttggtaaaatgccagagattcagttgggcgcccatacattcagaaaccaggcagtggaagtagcaagatttcacatgcatgactggcttattctcttccttcttggtggtgatagatatagttttaaatgtgatagaaccgtttcatcgttttgttggatctgacatgatgacagatttaagataccctttggaaagcacaataccattcccttttgggctgttccaattcattgctataatcttacctttgctagtcatcacttgtgttttacttcatcagaaaggatgtctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31136" stop="33638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31436" g_stop="31556" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31557" i_stop="32931" i_length="1375">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32932" g_stop="33155" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="351" r_length="227" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33156" i_stop="33272" i_length="117">
            <donor d_prob="0.691" d_score="0.88"/>
            <acceptor a_prob="0.040" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33338" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="419" r_length="68" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E581770" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31436" e_stop="31556"/>
          <exon e_start="32932" e_stop="33155"/>
          <exon e_start="33273" e_stop="33338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGACGCTTCGTTTGCTTTTGCTTTTCCTCTTCACCTTTATCTCTCCAATTATTTGAATTT-ACAGAAGCAAAACGAAAGCATTTTCTCCTCCGCATTCTCTTCTCCA-GATCG-TTTTCAGGTATTTTTTTTTGAGTTTTCGGTATTTTTATCAATGTACTTTTTGTAGTTTTTTTCAGTTTCCGCAACGGCGAAGTTTTTGTTACTTTTTCCGTTGATTAGTGTTGTTTAATATTAGTATAACAGTTCCTTAAGCAGTTCGGTTTGGTTACTGAGGCGGCGTAGCGGCGGCGGCGGCGGCGGAGGAGTAAACTGTGATTTTGCTGGTGTATGTGTTTTGGTTTGTTTAGAATAGTGCGAGTTATGTGGAAATTTAAGTATATGTAAGTGTTAGGAAAATGAGGAATTGAAGTTTGATGAAATTAGTGAGTAATTTGTGAAGACATTGTAGTAGCAGCTATTTATGGATAAAAAACAGTTTCATAACCTAATTCTATTTATTATTTTCTGTATAGTTATTTCGTACTGGTTTATAGAGCATATAGTTTGAATTGAAGCATGTTGTTGGTATATTAGTGGATGAGATGCTAACCGGTTGCTGCTGGTGTATGTGTGAGGAAAAAGTAACTTTTGAATTTGCTGTTGTACCGGTTTAGTTAGAATAGTATGAGGAATTGTCGAATTTTGTGAAAATTTGAGTTTATGGAAGTGGTATTGTTTGGAAAATGCTGAGCCTGGTAACGTAAGCTTGTAACTCAAGTGAAGGCATTAAGGTGATGAGGACAATTTAAAAAAAAATGAAAAAAATTATTGTAAGGAAAATGAGGATATGAAGTGCTAAGTGATGAAATTATAGAGTAATTTGAGAAGACGTTGTATTAGCTGGATTTATTTGTAGATTTTTTTGTATAGTAGATAGAGTTTAAATTGAAGCATGTTGTTGGCTGGGGAGAATTTAGCGTTTATGGTGTATGTGAACTTGTGGTGTTTCTGCAAAACTAGATATTCTATGTGTATATTTTTTAGAATTGATCTAATAATTACCTTCTGGCACTCATGCTACAAAAAGGTTTTTTGCCGCACTTGGTTGAAAACTAAATTATTTAGTAAAACCAAAAACAACGAGGTAGGGGAACTAATAAGTTAACAACTGAAGGTGAGTTCTTTCATCATGCTCAATCACACGAGGCTTAGTTTTTTTTGTTTTTTTTTGTATTTGTATGTGCTTGCCTCAAATCTTAAAACGCTGCAGACATTATCTCGTCTTCTAGTAATTTCTTTGTAGCCATGTTATCATTATTTTCTTTTCTCATAAGTGCCCCTTTGTTCTCTGTCTTAAGTGCAACATAGAATATATCGAGTCTCATTGATATAAAGTGAACATTATGAATCTTATCTTGCTTTTCTGTATATGTGGTACAAAAGGCTGTCTCTGTTTTTGTTACTTATTATCAATGTCATGCAAGTTTTACTAACACCTATTTTTGTTCTATTAGTTGGTAAAATGCCAGAGATTCAGTTGGGTGCCCATACGTTCAGAAATCAGGGAGTGGAAGTAGCAAGATTTCACATGCATGACTGGTTTATTCTCTTCGTACTT-GTGGTGATAGATATAATTTTAAATGTGATAGAACCATTTCACCGCTTTGTTGGATCTGACATGATGACAGATTTAAGTTACCCTTT-GAAAG-ACAATACCATTCCCTTTTGGGCTGTTCCGGTAAGTGCACTTTAGGACAAATTGGGTTTGAGATATTACATAGTTACGAAGAAGTATGCGTGTTTTTTGTACATCTAAGTAGGCATTTTATAATCCATGTCTTTTCCTTGTAAACAGATT-ATTGCTATAGTCTTACCTTTGCTAGTCAT-ACTTGTGTTTTACTTCATCAGGAAGGATGTTTAC</genome_strand>
        <mrna_strand>TTTTGACGCTTCCTTTGCTTTTGCTTTTCCTCTTCACCTTTATCTCTCCAATTATTTGAATTTCCCAGAAGCAAAACGAAAGCGTTTTCTCCTTCGCATTCTCTTCTCCAGGATCGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTAAAATGCCAGAGATTCAGTTGGGCGCCCATACATTCAGAAACCAGGCAGTGGAAGTAGCAAGATTTCACATGCATGACTGGCTTATTCTCTTCCTTCTTGGTGGTGATAGATATAGTTTTAAATGTGATAGAACCGTTTCATCGTTTTGTTGGATCTGACATGATGACAGATTTAAGATACCCTTTGGAAAGCACAATACCATTCCCTTTTGGGCTGTTCCA.....................................................................................................................ATTCATTGCTATAATCTTACCTTTGCTAGTCATCACTTGTGTTTTACTTCATCAGAAAGGATGTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706384" ref_strand="+" ref_description="SGN-E706384 [FA29DC05]">
      <seq>gtttgcttttgcttttcctcttcacctttatctctccaattatttgaatttacagaagcaaaacgaaagcattttctcctccgcattctcttctccagatcgttttcagttggtaaaatgccagagattcagttgggtgcccatacgttcagaaatcagggagtggaagtagcaagatttcacatgcatgactggtttattctcttcgtacttgtggtgatagatataattttaaatgtgatagaaccatttcaccgctttgttggatctgacatgatgacagatttaagttaccctttgaaagacaataccattcccttttgggctgttccgattattgctatagtcttacctttgctagtcatacttgtgttttacttcatcaggaaggatgtttacgatgtgcatcaagctatattaggattgttgtactctgtactcatcagctctgttcttactgatgcaataaaagatgccgttggtcgaccccgtccagacttcttttggcggtgtttccctgatggaaaaggggtgtttgatccgatcacaagcaatgtcaaatgtactggcttgaaaagtgttatcaaagaaggacataagagtttcccaagcggacatagttcttggtcttttgctggtcttggcttcctcgcttggtacctgtcagggaaaatcaaggtgtttgatcaaagaggccatgttgctaagctctgccttgttttcctgcccttactgatggcggcgttagtcgcagtttcccgggttgatgattactggcaccattggcaagatgtatttgctggaggtctcctangactgactgtggctttcatttgttacttacaattctttcccccaccatatgatataaatggtaggatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31148" stop="35145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31448" g_stop="31556" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31557" i_stop="32931" i_length="1375">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32932" g_stop="33155" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="333" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33156" i_stop="33272" i_length="117">
            <donor d_prob="0.691" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33360" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="421" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33361" i_stop="33465" i_length="105">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33466" g_stop="33575" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="531" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33576" i_stop="33662" i_length="87">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33663" g_stop="33756" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="625" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33757" i_stop="34490" i_length="734">
            <donor d_prob="0.807" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34491" g_stop="34679" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="814" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34680" i_stop="34782" i_length="103">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34783" g_stop="34842" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="874" r_length="60" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E706384" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31448" e_stop="31556"/>
          <exon e_start="32932" e_stop="33155"/>
          <exon e_start="33273" e_stop="33360"/>
          <exon e_start="33466" e_stop="33575"/>
          <exon e_start="33663" e_stop="33756"/>
          <exon e_start="34491" e_stop="34679"/>
          <exon e_start="34783" e_stop="34842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCTTTTGCTTTTCCTCTTCACCTTTATCTCTCCAATTATTTGAATTTACAGAAGCAAAACGAAAGCATTTTCTCCTCCGCATTCTCTTCTCCAGATCGTTTTCAGGTATTTTTTTTTGAGTTTTCGGTATTTTTATCAATGTACTTTTTGTAGTTTTTTTCAGTTTCCGCAACGGCGAAGTTTTTGTTACTTTTTCCGTTGATTAGTGTTGTTTAATATTAGTATAACAGTTCCTTAAGCAGTTCGGTTTGGTTACTGAGGCGGCGTAGCGGCGGCGGCGGCGGCGGAGGAGTAAACTGTGATTTTGCTGGTGTATGTGTTTTGGTTTGTTTAGAATAGTGCGAGTTATGTGGAAATTTAAGTATATGTAAGTGTTAGGAAAATGAGGAATTGAAGTTTGATGAAATTAGTGAGTAATTTGTGAAGACATTGTAGTAGCAGCTATTTATGGATAAAAAACAGTTTCATAACCTAATTCTATTTATTATTTTCTGTATAGTTATTTCGTACTGGTTTATAGAGCATATAGTTTGAATTGAAGCATGTTGTTGGTATATTAGTGGATGAGATGCTAACCGGTTGCTGCTGGTGTATGTGTGAGGAAAAAGTAACTTTTGAATTTGCTGTTGTACCGGTTTAGTTAGAATAGTATGAGGAATTGTCGAATTTTGTGAAAATTTGAGTTTATGGAAGTGGTATTGTTTGGAAAATGCTGAGCCTGGTAACGTAAGCTTGTAACTCAAGTGAAGGCATTAAGGTGATGAGGACAATTTAAAAAAAAATGAAAAAAATTATTGTAAGGAAAATGAGGATATGAAGTGCTAAGTGATGAAATTATAGAGTAATTTGAGAAGACGTTGTATTAGCTGGATTTATTTGTAGATTTTTTTGTATAGTAGATAGAGTTTAAATTGAAGCATGTTGTTGGCTGGGGAGAATTTAGCGTTTATGGTGTATGTGAACTTGTGGTGTTTCTGCAAAACTAGATATTCTATGTGTATATTTTTTAGAATTGATCTAATAATTACCTTCTGGCACTCATGCTACAAAAAGGTTTTTTGCCGCACTTGGTTGAAAACTAAATTATTTAGTAAAACCAAAAACAACGAGGTAGGGGAACTAATAAGTTAACAACTGAAGGTGAGTTCTTTCATCATGCTCAATCACACGAGGCTTAGTTTTTTTTGTTTTTTTTTGTATTTGTATGTGCTTGCCTCAAATCTTAAAACGCTGCAGACATTATCTCGTCTTCTAGTAATTTCTTTGTAGCCATGTTATCATTATTTTCTTTTCTCATAAGTGCCCCTTTGTTCTCTGTCTTAAGTGCAACATAGAATATATCGAGTCTCATTGATATAAAGTGAACATTATGAATCTTATCTTGCTTTTCTGTATATGTGGTACAAAAGGCTGTCTCTGTTTTTGTTACTTATTATCAATGTCATGCAAGTTTTACTAACACCTATTTTTGTTCTATTAGTTGGTAAAATGCCAGAGATTCAGTTGGGTGCCCATACGTTCAGAAATCAGGGAGTGGAAGTAGCAAGATTTCACATGCATGACTGGTTTATTCTCTTCGTACTTGTGGTGATAGATATAATTTTAAATGTGATAGAACCATTTCACCGCTTTGTTGGATCTGACATGATGACAGATTTAAGTTACCCTTTGAAAGACAATACCATTCCCTTTTGGGCTGTTCCGGTAAGTGCACTTTAGGACAAATTGGGTTTGAGATATTACATAGTTACGAAGAAGTATGCGTGTTTTTTGTACATCTAAGTAGGCATTTTATAATCCATGTCTTTTCCTTGTAAACAGATTATTGCTATAGTCTTACCTTTGCTAGTCATACTTGTGTTTTACTTCATCAGGAAGGATGTTTACGATGTGCATCAAGCTATATTAGGTATTCTTTGCCCCTTATGTGACTATCAGCTTTTGCCTGGCAGCAAGTTATATTGGCTGGTATAGATAACTGGATCAGATTGATAACTTCGTGTGCTTTGTTCAGGATTGTTGTACTCTGTACTCATCAGCTCTGTTCTTACTGATGCAATAAAAGATGCCGTTGGTCGACCCCGTCCAGACTTCTTTTGGCGGTGTTTCCCTGATGGAAAAGGGGTATGTTAATTCGTCTTGGAATATCCTTTCTGTATCAGAAACTGATATGACATCATTTGCGACTTCCAATAATAATTTTGTGTTTAGGTGTTTGATCCGATCACAAGCAATGTCAAATGTACTGGCTTGAAAAGTGTTATCAAAGAAGGACATAAGAGTTTCCCAAGCGGACATAGTTCTTGTGAGTATCACTATTCCATGTCTGTTGCATTGTTGGCATCAGAAATTTGTGATTATTTCCTTTTTGGTACTCGACCCTTTAAACAAAGTGAGCTACCCTTCACTTCCATTCCTTCTTCCAAGGAATCTTTCTTAGTGATGTGAACTGTTTCCTTTTCCTCTGTATTGATATCTTATTCTTCTCCCATTCAACATAGGATTTCACTGCAAGATTTTAGATTGCTTTTCCTTGTAATAAGTACAACTGATCTTTAATAATTATATATAACATACTGAAAAAATGTAACATCTATGCTGTGTTTTCCGGTATAATTCAGTCAAGTACCTGCCAATTTTGTGCAACGATTTGTTAAAATGCCAAATAAGAGTTTTTTGTATTCATCACTACCCTATCACTCCTTTTCCCATATGTTTAACCTATGAATTTTTAATAATAAAGTTTTCACCTCAAATAGTTCAGCCATATTAGTTTGCTGTTTCATAGGTGAGTTTGACTTATGTTTGGATAATCTACATAAGTAGACATCTGGCTCATAACTTGGAATCCTGTAAGTCATAGGTGACTGTGGCTTATGCTTCAATTTTCACCCAGATATGACAATATCAAATATCATGATTCTTTGTGTCTGCATGGGTGTTTGGCTGTTTTATCTAAAGATCTTGGCTTGCTTTGAGTAAATTGAGTTCTTACATAAAACTGAAGCTTGTCGGCATTTGTTGGTATCATGTGAATAGGGTCTTTTGCTGGTCTTGGCTTCCTCGCTTGGTACCTGTCAGGGAAAATCAAGGTGTTTGATCAAAGAGGCCATGTTGCTAAGCTCTGCCTTGTTTTCCTGCCCTTACTGATGGCGGCGTTAGTCGCAGTTTCCCGGGTTGATGATTACTGGCACCATTGGCAAGATGTATTTGCTGGAGGTCTCCTAGGTTTGTATATTATGGAGGACCATGTACTTTTTTGTAGTTTTCTTGTTTTTTGTTGCCTTGTACAGAGAACTTATTGTTCATTTTCTTTGTGCCATTTATGCAGGACTGACTGTGGCTTCAATTTGTTACTTACAATTCTTTCCCCCACCATATGATATAGATG</genome_strand>
        <mrna_strand>GTTTGCTTTTGCTTTTCCTCTTCACCTTTATCTCTCCAATTATTTGAATTTACAGAAGCAAAACGAAAGCATTTTCTCCTCCGCATTCTCTTCTCCAGATCGTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTAAAATGCCAGAGATTCAGTTGGGTGCCCATACGTTCAGAAATCAGGGAGTGGAAGTAGCAAGATTTCACATGCATGACTGGTTTATTCTCTTCGTACTTGTGGTGATAGATATAATTTTAAATGTGATAGAACCATTTCACCGCTTTGTTGGATCTGACATGATGACAGATTTAAGTTACCCTTTGAAAGACAATACCATTCCCTTTTGGGCTGTTCCG.....................................................................................................................ATTATTGCTATAGTCTTACCTTTGCTAGTCATACTTGTGTTTTACTTCATCAGGAAGGATGTTTACGATGTGCATCAAGCTATATTAG.........................................................................................................GATTGTTGTACTCTGTACTCATCAGCTCTGTTCTTACTGATGCAATAAAAGATGCCGTTGGTCGACCCCGTCCAGACTTCTTTTGGCGGTGTTTCCCTGATGGAAAAGGG.......................................................................................GTGTTTGATCCGATCACAAGCAATGTCAAATGTACTGGCTTGAAAAGTGTTATCAAAGAAGGACATAAGAGTTTCCCAAGCGGACATAGTTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTTTGCTGGTCTTGGCTTCCTCGCTTGGTACCTGTCAGGGAAAATCAAGGTGTTTGATCAAAGAGGCCATGTTGCTAAGCTCTGCCTTGTTTTCCTGCCCTTACTGATGGCGGCGTTAGTCGCAGTTTCCCGGGTTGATGATTACTGGCACCATTGGCAAGATGTATTTGCTGGAGGTCTCCTAN.......................................................................................................GACTGACTGTGGCTTTCATTTGTTACTTACAATTCTTTCCCCCACCATATGATATAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474881" ref_strand="+" ref_description="SGN-E474881 [cSTB-38-C20]">
      <seq>cttcacctttatctctccaattatttgaatttcctgaagcaaaacgaaagcgttttctccttcgcattctcttctccaggtcatttttcagttggtaaaatgccagagattcagttgggcgcccatacattcagaaaccagggagtggaagtagcaagatttcacatgcatgactggcttattctcttcctacttgtggtgatagatatagttttaaatgtgatagagccgtttcaccggtttgttggatctgacatgatgacagatttaagataccctttgaaagacaataccattcccttttgggctgttccaattattgctataatcttacctttgctagtcatacttgtcttttacttcatccgaaaggatgtatacgacgtgcatcaagctatattaggattgttgtactctgtactcatcacctctgttcttactgatgcaataaaagatgccgttggtcgaccccgtccagacttcttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31167" stop="33851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31467" g_stop="31556" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31557" i_stop="32931" i_length="1375">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32932" g_stop="33155" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="315" r_length="224" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33156" i_stop="33272" i_length="117">
            <donor d_prob="0.691" d_score="0.96"/>
            <acceptor a_prob="0.040" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33360" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="403" r_length="88" r_score="0.932"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33361" i_stop="33465" i_length="105">
            <donor d_prob="0.900" d_score="0.90"/>
            <acceptor a_prob="0.784" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33466" g_stop="33551" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="489" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E474881" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31467" e_stop="31556"/>
          <exon e_start="32932" e_stop="33155"/>
          <exon e_start="33273" e_stop="33360"/>
          <exon e_start="33466" e_stop="33551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACCTTTATCTCTCCAATTATTTGAATTTACAGAAGCAAAACGAAAGCATTTTCTCCTCCGCATTCTCTTCTCCAGATCGTTTT-CAGGTATTTTTTTTTGAGTTTTCGGTATTTTTATCAATGTACTTTTTGTAGTTTTTTTCAGTTTCCGCAACGGCGAAGTTTTTGTTACTTTTTCCGTTGATTAGTGTTGTTTAATATTAGTATAACAGTTCCTTAAGCAGTTCGGTTTGGTTACTGAGGCGGCGTAGCGGCGGCGGCGGCGGCGGAGGAGTAAACTGTGATTTTGCTGGTGTATGTGTTTTGGTTTGTTTAGAATAGTGCGAGTTATGTGGAAATTTAAGTATATGTAAGTGTTAGGAAAATGAGGAATTGAAGTTTGATGAAATTAGTGAGTAATTTGTGAAGACATTGTAGTAGCAGCTATTTATGGATAAAAAACAGTTTCATAACCTAATTCTATTTATTATTTTCTGTATAGTTATTTCGTACTGGTTTATAGAGCATATAGTTTGAATTGAAGCATGTTGTTGGTATATTAGTGGATGAGATGCTAACCGGTTGCTGCTGGTGTATGTGTGAGGAAAAAGTAACTTTTGAATTTGCTGTTGTACCGGTTTAGTTAGAATAGTATGAGGAATTGTCGAATTTTGTGAAAATTTGAGTTTATGGAAGTGGTATTGTTTGGAAAATGCTGAGCCTGGTAACGTAAGCTTGTAACTCAAGTGAAGGCATTAAGGTGATGAGGACAATTTAAAAAAAAATGAAAAAAATTATTGTAAGGAAAATGAGGATATGAAGTGCTAAGTGATGAAATTATAGAGTAATTTGAGAAGACGTTGTATTAGCTGGATTTATTTGTAGATTTTTTTGTATAGTAGATAGAGTTTAAATTGAAGCATGTTGTTGGCTGGGGAGAATTTAGCGTTTATGGTGTATGTGAACTTGTGGTGTTTCTGCAAAACTAGATATTCTATGTGTATATTTTTTAGAATTGATCTAATAATTACCTTCTGGCACTCATGCTACAAAAAGGTTTTTTGCCGCACTTGGTTGAAAACTAAATTATTTAGTAAAACCAAAAACAACGAGGTAGGGGAACTAATAAGTTAACAACTGAAGGTGAGTTCTTTCATCATGCTCAATCACACGAGGCTTAGTTTTTTTTGTTTTTTTTTGTATTTGTATGTGCTTGCCTCAAATCTTAAAACGCTGCAGACATTATCTCGTCTTCTAGTAATTTCTTTGTAGCCATGTTATCATTATTTTCTTTTCTCATAAGTGCCCCTTTGTTCTCTGTCTTAAGTGCAACATAGAATATATCGAGTCTCATTGATATAAAGTGAACATTATGAATCTTATCTTGCTTTTCTGTATATGTGGTACAAAAGGCTGTCTCTGTTTTTGTTACTTATTATCAATGTCATGCAAGTTTTACTAACACCTATTTTTGTTCTATTAGTTGGTAAAATGCCAGAGATTCAGTTGGGTGCCCATACGTTCAGAAATCAGGGAGTGGAAGTAGCAAGATTTCACATGCATGACTGGTTTATTCTCTTCGTACTTGTGGTGATAGATATAATTTTAAATGTGATAGAACCATTTCACCGCTTTGTTGGATCTGACATGATGACAGATTTAAGTTACCCTTTGAAAGACAATACCATTCCCTTTTGGGCTGTTCCGGTAAGTGCACTTTAGGACAAATTGGGTTTGAGATATTACATAGTTACGAAGAAGTATGCGTGTTTTTTGTACATCTAAGTAGGCATTTTATAATCCATGTCTTTTCCTTGTAAACAGATTATTGCTATAGTCTTACCTTTGCTAGTCATACTTGTGTTTTACTTCATCAGGAAGGATGTTTACGATGTGCATCAAGCTATATTAGGTATTCTTTGCCCCTTATGTGACTATCAGCTTTTGCCTGGCAGCAAGTTATATTGGCTGGTATAGATAACTGGATCAGATTGATAACTTCGTGTGCTTTGTTCAGGATTGTTGTACTCTGTACTCATCAGCTCTGTTCTTACTGATGCAATAAAAGATGCCGTTGGTCGACCCCGTCCAGACTTCTTTTGG</genome_strand>
        <mrna_strand>CTTCACCTTTATCTCTCCAATTATTTGAATTTCCTGAAGCAAAACGAAAGCGTTTTCTCCTTCGCATTCTCTTCTCCAGGTCATTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTAAAATGCCAGAGATTCAGTTGGGCGCCCATACATTCAGAAACCAGGGAGTGGAAGTAGCAAGATTTCACATGCATGACTGGCTTATTCTCTTCCTACTTGTGGTGATAGATATAGTTTTAAATGTGATAGAGCCGTTTCACCGGTTTGTTGGATCTGACATGATGACAGATTTAAGATACCCTTTGAAAGACAATACCATTCCCTTTTGGGCTGTTCCA.....................................................................................................................ATTATTGCTATAATCTTACCTTTGCTAGTCATACTTGTCTTTTACTTCATCCGAAAGGATGTATACGACGTGCATCAAGCTATATTAG.........................................................................................................GATTGTTGTACTCTGTACTCATCACCTCTGTTCTTACTGATGCAATAAAAGATGCCGTTGGTCGACCCCGTCCAGACTTCTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302246" ref_strand="+" ref_description="SGN-E302246 [cLEW-19-O22]">
      <seq>tcattctgtttcggcatagaacttgtttctaaaagtgaagccacatggcgttttagtgatatatactctgcagagttcattgattgggggttggtacatcaagctgcctttttgggccagtcatttgagatgtaccgatttacaatacgcggagtccagaaatcaaagacacaaccttctgttttggttccatctttttatacttttggacataaggattcacaaacatgtcagatgtgggttaatcagattaatgatcttctaaacagggacgctgagcggccaaagaaccttctggtttttgttaacccaaagagtgggaaaggactcggatgtaaagtttgggaaacagtggctccgacattttctcaagcgaaagtgaaaatgaaggttactgtgacagaaagggcaggacaagctattgacatgatgtcttccattacaagtagagagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="47804" stop="45207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47504" g_stop="47376" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47375" i_stop="47300" i_length="76">
            <donor d_prob="0.816" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47299" g_stop="47132" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="297" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47131" i_stop="46986" i_length="146">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46985" g_stop="46893" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="390" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46892" i_stop="45572" i_length="1321">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45571" g_stop="45507" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="455" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E302246" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47504" e_stop="47376"/>
          <exon e_start="47299" e_stop="47132"/>
          <exon e_start="46985" e_stop="46893"/>
          <exon e_start="45571" e_stop="45507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCTGTTTCGGCATAGAACTTGTTTCTAAAAGTGAAACCACATTGCGTTTTAGTGATATATACTCTGCAGAGTTCATTGATTGGGGGTTGGTACATCAAGCTGCCTTTTTGGGCCAGTCATTTGAGGTTATAATTATTTTACAATAGGATCTAAAGATGTCTACTTTGATCAAGAGGTAACAATATGTATATGTGGATACAGATGTACCGATTTACAATACGCGGAGTCCAGAAATCAAAGACACAACCTTCTGTTTTGGTTCCATCTTTTTATACTTTTGGACATAAGGATTCACAAACATGTCAGATGTGGGTTAATCAGATTAATGATCTTCTAAACAGGGACGCTGAGCGGCCAAAGAACCTTCTGGTAAGTTTAGTATGTTATCAATTACCAGTTAACATGTATGTTAGTTGCTAAATCTCTGGTAGTGCCTGTACTCTCTAAATGGTGACAGAAATTGACTTCAGATTGAAGTTTAAGTTTCTTCAGACTCTTTCCTTTGTGATTAGTAGGTTTTTGTTAACCCAAAGAGTGGGAAAGGACTCGGATGTAAAGTTTGGGAAACAGTGGCTCCGACATTTTCTCAAGCGAAAGTGAAAATGAAGGTAAAGTTTTCTGGTAGCTTGTGTTTCATTATTGAAGGATGTTCTGAGTTTGCATTTCATTCTAGATTGTCTATGAGAATGATGATATGTTGTTGTTAGCTTTTGGTCCGATATCTCTTACTATCCTATGTTTCTTGTACTTTGATTATCGTATTTTGGCTGTAGTTACTATTTAGTTGCTTTGTGATGGTTTCACTTCTGTTTATTCTCTGTGTGGACTGTTTTAGACTATTGAGGTTCTATCGGAAACGATCTCTCTACCTCTGAGGTAGGGGTAAGGTCTGCGTACACTACCCTCCCTAGACCCCACTTTGTGAGTATATATGTTGTTGTCTGATTTCCCTTTTCAACCCTCGACCAATTTAAGTGCAACAGAGGAATAAAAAACAAGATTGATTTTAGGATCTATCTTCATTTAAATTCTGTGTAAAATTTACTCGAGATAAGAGTTTCTGAAGATGCTATAAATAGAAAGACAATTATTTTTTAGCATTTCTTTCAAGTAAGAAATGCTAAATAAAATTGACCAAAATGGTAGCCTCTGTTGTTAAATTGCATTATCTATCTTCAAAAGGCTACTTAGTATATCAGCTTTATATACTCTTACATCTTAAAATATGTCTACTAATTCAAAACCCACAGCCTTTTATTCTTCTGACTAAACATCACCAAGAAAGTGCAGGGTATTTACAGTGGGTAAAAGCTCAGTTGCCCCTTATTTTTTTGATTAGCACTCAATTGCCCCTTATAAATTTCGGGAACTGAGGAGTTCTGGTGATGCATCCATGTCATATAAATCTTGTCTGTAATAGTACAAAGACAAAAAGTTCAAACATTTGTATTTGAAACTATATACATGTACTGTGCCATCAAACATCTTTTTCTCTCTGGGCAAATTTCTATCTGGCTATTGCACCAAAAGGTGATTGACATCTTCCACAGTAGCAGCACATAGAACATCTACTACTTAAAATGATGCATCATTTATGTAGGCTTATGTATCTCAGACACACTTCGCTTGCTGCAACATAGCAAAATCCCTTACCTTAAGAGAATCATAATATCTCTAGGTACTGAAAACCTGAAACTCATTCAAGTTTTCTTCTGTTATCTGCAAAATAGTCAATCGGGTCAATTGAAATTTGTTGTTTCATTGCGTCCGGGCTTAGTTCGAGTGCCAAAGGTTGAGGGATTTGTGATTTTTAGGTCACAGGTTCAATATCTGCAGACTAAACTTGGATAATTCAGCTTTGAAAGTGGATAATTATTGTTTATGTTCCAGTTTGTACTCTTTTTAAGTTCGCTGTATTCTTTTCATCAGGTTACTGTGACAGAAAGGGCAGGACAAGCTATTGACATGATGTCTTCCATTACAAGTAGAGAGCT</genome_strand>
        <mrna_strand>TCATTCTGTTTCGGCATAGAACTTGTTTCTAAAAGTGAAGCCACATGGCGTTTTAGTGATATATACTCTGCAGAGTTCATTGATTGGGGGTTGGTACATCAAGCTGCCTTTTTGGGCCAGTCATTTGAG............................................................................ATGTACCGATTTACAATACGCGGAGTCCAGAAATCAAAGACACAACCTTCTGTTTTGGTTCCATCTTTTTATACTTTTGGACATAAGGATTCACAAACATGTCAGATGTGGGTTAATCAGATTAATGATCTTCTAAACAGGGACGCTGAGCGGCCAAAGAACCTTCTG..................................................................................................................................................GTTTTTGTTAACCCAAAGAGTGGGAAAGGACTCGGATGTAAAGTTTGGGAAACAGTGGCTCCGACATTTTCTCAAGCGAAAGTGAAAATGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGTGACAGAAAGGGCAGGACAAGCTATTGACATGATGTCTTCCATTACAAGTAGAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704510" ref_strand="+" ref_description="SGN-E704510 [FA24CA04]">
      <seq>ttttcggttaaacctcaacgggactgaacacatacaatttcattattcccaaattctcttttcttcttcaaattcatgcatcacaacaacaacgcacagtgagttacagatcggattaagcgcttacggcggaatacggcggtgctgaacaacattgccgcttgacgctttcattctctcacaaggatgtctgttgatggggagtttgccaatggctcatccatcttaactgatgaaaaattgcccgaagtggcgaatccagctattgcatgtgaaattgcatctagcagtggcactgctgtgtctacaaaagaaattttgaactgccctgctgataagggtcaaatggaacataatccagcctcagagataacaggcattgaagaaatgagtggcaaatccggtggttcagaaaaaggaaatgatgacgaaaaattaagaaacataagtgcagaagctgcaaacacaggatgcagtggagagaagatacaatgtgaccaaagtgtaaagactgaaaatgcagacactgacggtgatcaaggggaactgagcatggtcgctgaaatcaaaggggtgaatgaaagaggaggtgattttgatggcggtgttaatttgatatgtgaagaaagtgcaaatgctgataaggtagagagcaacggccaaaaggtatgtagcacagagattanagccgttgaagaaattatgggtgaatctaatggttcatggaaaaatgataagagcgtggatgcggaaaaaggggatatcaacaattcaatggatatcgaccctgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="56583" stop="59333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56883" g_stop="57067" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57068" i_stop="58422" i_length="1355">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58423" g_stop="59033" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="796" r_length="611" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E704510" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56883" e_stop="57067"/>
          <exon e_start="58423" e_stop="59033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGGTTAAACCTCAACGGGACTGAACACATACAATTTCATTATTCCCAAATTCTCTTTTCTTCTTCAAATTCATGCATCACAACAACAACGCACAGTGAGTTACAGATCGGATTAAGCGCTTACGGCGGAATACGGCGGTGCTGAACAACATTGCCGCTTGACGCTTTCATTCTCTCACAAGGTGAACTTTTTTTTGTTGTTTTTGTTTTTTTGTGATTTCGTTGAGGTTTTGATCCGGTACATCGATCTGAGTTTAATTCAGTTGAAGTGAATGTGAATGTATCAGAAATCGCGTTTTCTGATGTTGAATTTGGTACATGCATTGTTTTACTCAGTTGTCGGTGTAGTTTTTTTTGTGTTTGAACTGGTGGAGATTGGTGATCCGTGTGTATGTGTGTTCAGTTATGATCTGTGTTTTTTGAAGTTGATGCGAGAGGTGAATTGGATTTAATTTTAGCATTTCCTTTGCTTTAAGAGTGAAAACTAGTGATTTTTTTGGGTAAATTATGTGTTGCTGGCGTGGTGGAAAAGCCTAATTCGCTGTGAATTGGATCATGAAATTGGAAGATGTGATTTAAAGTTAATGGAATTGGTTAGAAGTCCGATTTTGACATGAAAGAGTTGTATAATTTTTAGATGTCAATTTAGCAGGAAATGAAAGTTCTAGGAGATGGTCGAGTAGAATTATTTAGTAAATGTAGTTTCTTTTTGTTGTTGTGTGTGATCTCAGTTCTCAGATGTATATATGTATGATTCATGCTTTGTGAAGTTGACGCTAGAGTTTAATTGGAGTCAGTTTTAGTATTTCATTTGCTATAGGTGTGAAGAAGAGTGAACTTTTGGTAAGTCATGTGTTGCTGGTGCCGCAGAAAAGGATACTCCATTGTGAATTTGATCATGGAATTGAAAGACATGATTTTAAGTTAATAGCATTGGTTCGAAGTTCAACTTCGACATGTAAGAGTTATATAATTTAACATACCAATTAGGGGTAAAAGAAGGCTCCAGGAGATGGTCTAAGTAGCATGTTTAGTAGATGTGTTTTTATTGATTATCTTGTTCTTTTTGTTTTTGTTGTTGTGTGTGATCTCAGATCAGTTTACTTATGATCTGTGCTTTATGAAGTTGATGCGAAAGGTCAATTTTGGATTTAATTTTAATATTTCATTTGTTTTAGGTGTGAAAAAGATTTAATATTTTGTAAATCATTGTTGTTGGCGCCGCAGGAACATCCATTTTACTATGAATTTGATCATGAAATTGTAACCTGTAAGATCCAATTTTAATTTTACACTGGGGTGAATCAATTGAGACAGCGAAAGAAGCCAAAGGAAACCTTTGTCAAGTGCATCTAAGCATTTCTTGTACCTGGGGATGCCCTGGTTATTTAGCTCATTCAGTCTCTCTCACTTACTTTTATTTATAATCTTTCATTTTTTCTTCTGTATCTTTAACTTTGTTGATGGTTTTACATCTGGGATTGGTTATTCTGGGGGATAAAAGGATTTAAGCCTAACATAATTGTTGTGGTTGTAGGATGTCTGTTGATGGGGAGTTTGCCAATGGCTCATCCATCTTAACTGATGAAAAATTGCCCGAAGTGGCGAATCCAGCTATTGCATGTGAAATTGCATCTAGCAGTGGCACTGCTGTGTCTACAAAAGAAATTTTGAACTGCCCTGCTGATAAGGGTCAAATGGAACATAATCCAGCCTCAGAGATAACAGGCATTGAAGAAATGAGTGGCAAATCCGGTGGTTCAGAAAAAGGAAATGATGACGAAAAATTAAGAAACATAAGTGCAGAAGCTGCAAACACAGGATGCAGTGGAGAGAAGATACAATGTGACCAAAGTGTAAAGACTGAAAATGCAGACACTGACGGTGATCAAGGGGAACTGAGCATGGTCGCTGAAATCAAAGGGGTGAATGAAAGAGGAGGTGATTTTGATGGCGGTGTTAATTTGATATGTGAAGAAAGTGCAAATGCTGATAAGGTAGAGAGCAACGGCCAAAAGGTATGTAGCACAGAGATTAAAGCCGTTGAAGAAATTATGGGTGAATCTAATGGTTCATGGAAAAATGATAAGAGCGTGGATGCGGAAAAAGGGGATATCAACAATTCAATGGATATCGACCCTGTTACTG</genome_strand>
        <mrna_strand>TTTTCGGTTAAACCTCAACGGGACTGAACACATACAATTTCATTATTCCCAAATTCTCTTTTCTTCTTCAAATTCATGCATCACAACAACAACGCACAGTGAGTTACAGATCGGATTAAGCGCTTACGGCGGAATACGGCGGTGCTGAACAACATTGCCGCTTGACGCTTTCATTCTCTCACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCTGTTGATGGGGAGTTTGCCAATGGCTCATCCATCTTAACTGATGAAAAATTGCCCGAAGTGGCGAATCCAGCTATTGCATGTGAAATTGCATCTAGCAGTGGCACTGCTGTGTCTACAAAAGAAATTTTGAACTGCCCTGCTGATAAGGGTCAAATGGAACATAATCCAGCCTCAGAGATAACAGGCATTGAAGAAATGAGTGGCAAATCCGGTGGTTCAGAAAAAGGAAATGATGACGAAAAATTAAGAAACATAAGTGCAGAAGCTGCAAACACAGGATGCAGTGGAGAGAAGATACAATGTGACCAAAGTGTAAAGACTGAAAATGCAGACACTGACGGTGATCAAGGGGAACTGAGCATGGTCGCTGAAATCAAAGGGGTGAATGAAAGAGGAGGTGATTTTGATGGCGGTGTTAATTTGATATGTGAAGAAAGTGCAAATGCTGATAAGGTAGAGAGCAACGGCCAAAAGGTATGTAGCACAGAGATTANAGCCGTTGAAGAAATTATGGGTGAATCTAATGGTTCATGGAAAAATGATAAGAGCGTGGATGCGGAAAAAGGGGATATCAACAATTCAATGGATATCGACCCTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340528" ref_strand="+" ref_description="SGN-E340528 [cTOF-1-H6]">
      <seq>taggatggtatctagtgtagataaagttagtagtatgtcacaacgtccggtctctcagctagtaaaacaagtagtagttcttaaggatgaaattaatgatgacagtattgttgtgccagcagccgaaggtatgaaacaggttgagaaaacgaaagaggctcgcaaaccaattcaaagagagagtacggttgaggagccaaaagaggccgagcctgtgcaaactgctgaggagctagaggctgctagaaaggaggaggaactgagaaagcgtgaggaagaagcaaggttgaaagagcaacgacggttggaagagattgcaaaggctaaggaggcattagaaaggaaaaaacgcaatgcagagaaggcccaactgagagctgaaatgcgagcccagaaggaagaagagcagagactcaaggagaaggagaaaaaactgcggaaaagggaaaggaagaagggctccgtaggtgaaacacagagcgaaactaatgatggtgaagctgctttgatttctaccagcctaagagaaactgtcaaggagcccgatgctactgagaattctcaaacactcactangagaaaacagaaatcgtctcaatatacaaaacagatgaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="67848" stop="69151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68148" g_stop="68565" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68566" i_stop="68651" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68652" g_stop="68851" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="618" r_length="200" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E340528" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68148" e_stop="68565"/>
          <exon e_start="68652" e_stop="68851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGATGGTATCTAGTGTAGATAAAGTTAGTAGTATGTCACAACGTCCGGTCTCTCAGCTAGTAAAACAAGTAGTAGTTCTTAAGGATGAAATTAATGATGACAGTATTGTTGTGCCAGCAGCCGAAGGTATGAAACAGGTTGAGAAAACGAAAGAGGCTCGCAAACCAATTCAAAGAGAGAGTACGGTTGAGGAGCCAAAAGAGGCCGAGCCTGTGCAAACTGCTGAGGAGCTAGAGGCTGCTAGAAAGGAGGAGGAACTGAGAAAGCGTGAGGAAGAAGCAAGGTTGAAAGAGCAACGACGGTTGGAAGAGATTGCAAAGGCTAAGGAGGCATTAGAAAGGAAAAAACGCAATGCAGAGAAGGCCCAACTGAGAGCTGAAATGCGAGCCCAGAAGGAAGAAGAGCAGAGACTCAAGGTAAATCTTCAGCTCTTTCAAAGCAGATCGTTTTTTCTCAATAAATTATGGTTTTATAGTTTTAAATCATATCTTGTTTAATACAGGAGAAGGAGAAAAAACTGCGGAAAAGGGAAAGGAAGAAGGGCTCCGTAGGTGAAACACAGAGCGAAACTAATGATGGTGAAGCTGCTTTGATTTCTACCAGCCTAAGAGAAACTGTCAAGGAGCCCGATGCTACTGAGAATTCTCAAACACTCACTAGGAGAAAACAGAAATCGTCTCAATATACAAAACAGATGAAGAC</genome_strand>
        <mrna_strand>TAGGATGGTATCTAGTGTAGATAAAGTTAGTAGTATGTCACAACGTCCGGTCTCTCAGCTAGTAAAACAAGTAGTAGTTCTTAAGGATGAAATTAATGATGACAGTATTGTTGTGCCAGCAGCCGAAGGTATGAAACAGGTTGAGAAAACGAAAGAGGCTCGCAAACCAATTCAAAGAGAGAGTACGGTTGAGGAGCCAAAAGAGGCCGAGCCTGTGCAAACTGCTGAGGAGCTAGAGGCTGCTAGAAAGGAGGAGGAACTGAGAAAGCGTGAGGAAGAAGCAAGGTTGAAAGAGCAACGACGGTTGGAAGAGATTGCAAAGGCTAAGGAGGCATTAGAAAGGAAAAAACGCAATGCAGAGAAGGCCCAACTGAGAGCTGAAATGCGAGCCCAGAAGGAAGAAGAGCAGAGACTCAAG......................................................................................GAGAAGGAGAAAAAACTGCGGAAAAGGGAAAGGAAGAAGGGCTCCGTAGGTGAAACACAGAGCGAAACTAATGATGGTGAAGCTGCTTTGATTTCTACCAGCCTAAGAGAAACTGTCAAGGAGCCCGATGCTACTGAGAATTCTCAAACACTCACTANGAGAAAACAGAAATCGTCTCAATATACAAAACAGATGAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609551" ref_strand="+" ref_description="SGN-E609551 [25562]">
      <seq>tttttattaagtatctgttttttttttttgtagtaaagtaataaataccaatattatgttctatgttgcttaaaaaaatatctgatcactctactaagaaccaaaatgttcaaaactatgatgaaccaacatattatgtatatatatagaacgaaagaatggcctctcctctcttcatctgtaagttataaaacaaacctatttccaagccaaatctaacaaggtaatgaccctaatatccagggttttttggtggcctcagatgggagaagaagccaatgtttcctaggaagaacagagcaatgacgaccgcgcaagaaagaaataaccaaagccactgctgccatttccttttacctttgatgcgaggcgggggaggaatggacttagtcttcatctgttttgtatattgagacgatttctgttttctcctagtgattgtttgaggattctcagtagcctcgggctccttgaaagtttctcttaggcttgtggaaatcaaagcagtttcaccatcattagtttcgctctgtgtttcacctacggagcccttcttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="69532" stop="68382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69252" g_stop="68682" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E609551" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69252" e_stop="68682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTATTAAGTATCGGGGTTTTTTTTTTTTTGTAGTAAAGTAATAAATACCAATATTATGTTCTATGTTGCTT--AAAAACATCTGCTCACTCTACTAAGAACC-AAATGTTCAAATCTATGATGAACCAACATATATTATGTATATATATAGAACGAAAGAATGGTCTCTCTCCTCACTTCATCTGTAAGATATAAAACAAACCTGTAGTCTTTACTCCAAGCCAGATCTAACAAGGTAATGACCCTAATATGCAGGGTTTTTTGGTGGCTTCAGATGGGAGAAGAAGCCAATATTTCCTAGGAAGAACAGAGCAATGACGACTGCGCAAGAAAGAAATAACCAAAGCCACTGCTGCCATTTCCTTTTACCTTTGATACGAGGAGGGGGAGGAATGGATTTAGTCTTCATCTGTTTTGTATATTGAGACGATTTCTGTTTTCTCCTAGTGAGTGTTTGAGAATTCTCAGTAGCATCGGGCTCCTTGACAGTTTCTCTTAGGCTGGTAGAAATCAAAGCAGCTTCACCATCATTAGTTTCGCTCTGTGTTTCACCTACGGAGCCCTTCTTCCT</genome_strand>
        <mrna_strand>TTTTTATTAAGTATCTG--TTTT-TTTTTTTTGTAGTAAAGTAATAAATACCAATATTATGTTCTATGTTGCTTAAAAAAATATCTGATCACTCTACTAAGAACCAAAATGTTCAAAACTATGATGAACCAAC--ATATTATGTATATATATAGAACGAAAGAATGG-C-CTCTCCTCTCTTCATCTGTAAGTTATAAAACAAACC--TA----TT--TCCAAGCCAAATCTAACAAGGTAATGACCCTAATATCCAGGGTTTTTTGGTGGCCTCAGATGGGAGAAGAAGCCAATGTTTCCTAGGAAGAACAGAGCAATGACGACCGCGCAAGAAAGAAATAACCAAAGCCACTGCTGCCATTTCCTTTTACCTTTGATGCGAGGCGGGGGAGGAATGGACTTAGTCTTCATCTGTTTTGTATATTGAGACGATTTCTGTTTTCTCCTAGTGATTGTTTGAGGATTCTCAGTAGCCTCGGGCTCCTTGAAAGTTTCTCTTAGGCTTGTGGAAATCAAAGCAGTTTCACCATCATTAGTTTCGCTCTGTGTTTCACCTACGGAGCCCTTCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613421" ref_strand="+" ref_description="SGN-E613421 [63195]">
      <seq>tggcttcttctcccatctgaggccaccaaaaaaccctggatattagggtcattaccttgttagatttggcttggaaataggtttgttttataacttacagatgaagagaggagaggccattctttcgttctatatatatacataatatgttggttcatcatagttttgaacattttggttcttagtagagtgatcagatatttttttaagcaacatagaacataatattggtatttattactttactacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68663" stop="69530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68963" g_stop="69230" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E613421" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.035" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68963" e_stop="69230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCTTCTCCCATCTGAAGCCACCAAAAAACCCTGCATATTAGGGTCATTACCTTGTTAGATCTGGCTTGGAGTAAAGACTACAGGTTTGTTTTATATCTTACAGATGAAGTGAGGAGAGAGACCATTCTTTCGTTCTATATATATACATAATATATGTTGGTTCATCATAGATTTGAACA-TTTGGTTCTTAGTAGAGTGAGCAG--ATGTTTTTAAGCAACATAGAACATAATATTGGTATTTATTACTTTACTACAAAAAAAAAA</genome_strand>
        <mrna_strand>TGGCTTCTTCTCCCATCTGAGGCCACCAAAAAACCCTGGATATTAGGGTCATTACCTTGTTAGATTTGGCTT-G-G--AA-A-T--AGGTTTGTTTTATAACTTACAGATGAAGAGAGGAGAG-G-CCATTCTTTCGTTCTATATATATACAT-A-ATATGTTGGTTCATCATAGTTTTGAACATTTTGGTTCTTAGTAGAGTGATCAGATATTTTTTTAAGCAACATAGAACATAATATTGGTATTTATTACTTTACTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687675" ref_strand="+" ref_description="SGN-E687675 [T3_tus_79_G08]">
      <seq>cgtttaaaattagttcttcaaatgatgattctagacttagagaattgggttacaagcaagaactctatcgtggtcttacgctcatttcaaacttttctttgacattttgcattgtatcagttcttactggtatatcaacattgtataaccaggccctaacttttggtgggcctgttactattgtttgtggatggcccataattggattaatgacacttattgtgggcctttctatggctgaaatatgttctgcttatccaacttctgctgggctttattattggagtgctaaattggctggaaacaagattggcccatttgctgcttggattactggctggttcaacattgttggtcagtgggctgtcacaacaagtgtagattattcattggctcagttagttcaggtaataattcttcttagcactggtggattaaatggtggcggatatcaggcctccaaatatgtggttatcgcccttcacgctggaattctgcttttacatgctttattaaacagtcttccgatttcatggctgtccttcattggacaactagccgctgcatggaatgttttaggtgtctttcttcttatgattttgatcccaatggttgcaacagaaagagctagcgctaaatttgtgtttactaacttcaacactgtcaaatgaggatggaatcaacaataaactctacatcttcgtcctcggacttctcatgaaccagtatacattgacaggttatgacgcttctgcccctatgacggaaaaaaccaaagatgcagataagaatggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="70848" stop="79602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71143" g_stop="71221" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71222" i_stop="71816" i_length="595">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71817" g_stop="72077" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="340" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72078" i_stop="78237" i_length="6160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78238" g_stop="78256" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="359" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78257" i_stop="78366" i_length="110">
            <donor d_prob="0.522" d_score="0.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78367" g_stop="78586" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="579" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78587" i_stop="78668" i_length="82">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78669" g_stop="78850" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="762" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78851" i_stop="79267" i_length="417">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79268" g_stop="79302" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="797" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E687675" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71143" e_stop="71221"/>
          <exon e_start="71817" e_stop="72077"/>
          <exon e_start="78238" e_stop="78256"/>
          <exon e_start="78367" e_stop="78586"/>
          <exon e_start="78669" e_stop="78850"/>
          <exon e_start="79268" e_stop="79302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAATTAGTTCTTCAAATGATGATTCTAGACTTAGAGAATTGGGTTACAAGCAAGAACTCTATCGTGGTCTTACGTAAGTCGTTCTTTCTTTATTTTTCGTTCATCTATTTGATTTATCGAGGACATGATGTTTCTAGATAGTTTAGTGGTGTCCCACTTACTCTTATAGTTTCTTGTTCTTTGAGTTTGGTTATTTTGGGGGGTTTTTTCACACTTCGATTGTCGTTGTATCTTGTTATGACTATTGTTTAGGATGATTCAACGGATTGTTTATAGTACTTTGTGATGATTGTCTTCATTTCGATTATTTCTTTCCCTATATTACCTTAGACTATATCTTTTTTTTTGGTCAAAAGTCCATCAGAAACAATCTCTCTACCTCTAAGCTAGTTATAAAATTTGCATACACTCTACTGTCTCTAAATCCTATTTTGTATAATTACAATTGTCGTTATATAGGCACAATTAGTAGATCCAATATTTTGAATACTATGAGTTTGAGTTCAAACACACCCTATTTCAAAATAATAAATGGGTTCAAGATCTATATACAAGGTTTGAACCGAAGCTTCTGAATTCGGATGAACTATGAATGACCTTTTATGTGCAGTCTGACTGACTATTCGTGTAAAGATCCTAACTTGTTGTTTTTTGGGCTTTATGAACAGGCTCATTTCAAACTTTTCTTTGACATTTTGCATTGTATCAGTTCTTACTGGTATATCAACATTGTATAACCAGGCCCTAACTTTTGGTGGGCCTGTTACTATTGTTTGTGGATGGCCCATAATTGGATTAATGACACTTATTGTGGGCCTTTCTATGGCTGAAATATGTTCTGCTTATCCAACTTCTGCTGGGCTTTATTATTGGAGTGCTAAATTGGCTGGAAACAAGATTGGCCCATTTGCTGCTTGGATTACTGGCTGGTAAGGCCCATTTCCTTTTCCTCTCTAGTTAAATGTTAAATTTAACATTTTGTGATTTTTCATATTTTTTAGTAATATGTTCGAGAAGATAGGAAGGTGCGGAGGTCGAGGGAGGGTAGAAGGGTAGTAGGTAGTTTGTCGTATTTTCACATGGGAGAGGAAGGGTTTTGTCTCATCTTCTCATTGTTTATAATAGTCATTTCGATAAATTTTAAAGTGATAGAAAATAAACTGCAATCATAAATAAAATATAACGAAAACATAACTTTATTGATAAACATCTTATGATTCTTCTTTCATAAGATATTTATTCATTATTTGAGGGTTGTTTGTGTCGTATTTCTCGAACTAAGGTAATTTAAATTTGATCTCCTTAGGAATATTCCATGAATTTGCGTAATATTCGAGATGCCTTGTAAAGGGAATATACTACCTTTTATATAGGCATGAACTAACTGTTTAGGGTTGAGTACCTTCTAAGTACCTTATTTGAAAGTTGAACACATCTTGTAGAGTCCAATTAAAATTGAACGTATCTTGTAGAGTCTCACAAAATTTCAATGTCTACAATAGTATTATTTGATATTCGTGTTGTATCTCATTTTTTACTTCTATTTGTTGTCTTATTTGCTTTGTATATCTTGCTATTTTGTTGTACTTATTTTTGTTTTTCTAATCCTGATGCTTTGATTTTTGAGCTGGTGGACTATTAGGGTTGTCTGTTGTGGGTGTGTGTGTTAAGGTCTCTATTCTTGGTAAAATTTTTGAGTTTAATCAAATTATAGATTTTTTTTCTTAAAAAAAGAGCGATTATATATATTGATCTTAATGTCTTCGTATATAGTGCAAATATGTATTATTTGGGTAATTGAGACAGTTTACAAAATAGCGATAACGCGAGCTATGAATCACTTCACAATCTTGTAATTGAATCATCATGAAGTTTTATATATTAAATTTAAAACCTTACGACAATGACTATTTTTCAATTCAAAAGTAATTATTTATCTAAATAAATAATTTTTGCCATTTGATAACATATTTTAAATTAGTTATTGTCTCACCTTAAAGATGTGTCCTAGAGGACAGGTTTACTAATATAATATCATAAAACGCACACACATATGCATATAATTCCAAATAGTTATAATAATGTAGAATCGACAATTAATAGCTTTTCACATTTTGTATGATAATGACTTTTAAAGTAAACAATATAATGTCATTTTAAGTTAAGTAGTTGTTTGATATATACTTTGATATTTAATTGATTGCTCATGTTTTTTTTGTGATATAAAAATCGTGTAAGGACCAAATAAATAGATTAACGTAGATATGTTTGAATGATAGATATTTTTAAAAAATTTTTTTTTTGACTTTTTTTTTCTTTCGAGGTGTTATTAGTCTCACCATGTGAAAATGAGACGAAACTGTCTACTTTTGTGTTTAGATCATTGTCCAATCACTTGAATTTGTTGATACAATGTGTGAAAAGGAGATGAAATTGTACACTTTTGTGTTCGTATCATTGTCCAATCCACTGAGAATGTTAATTCGATCAACTTAGTAATTTCGAATTCGAAGTATGAATATATTAAAAAAAATCTTATTACGAAACACTTCTCCCTTTTGAAATATGAGAAGATAAAAAAAATATCACTAACATGTCAAAAAGAACTACTTTTTTTTTGACATTAAAATACATGTATTTTTTGTGGTTTATTCATTCATTTTTTTTAAAAAATATCTAACACATGGTACCATTAGTACTTCTTTTGGGGTTTAGCCAAAAAGAGAATGATATAAAATATTGACTTTATTGTAATAAATCTTAGGAGTACTAAAGTTGGATTTTCTTTAACTAAAATAAACAGAATTGTGATATATATCAATATGATGATTATGATATTAATTAGTTGATATATACTCCAAGAGAAATATTATATAACGTTCATAGAAAAATAAATAGTACAAAGCACAAAATATAACAAATATCAACATATATACGTTGAAAAACATAAATTTTCTTTTGAATTTGTTTCAAAAAATCAATTATATGCATAAATTTAGAGGGCAAGGTCATCCGCTTTTGAATAATAAATGTATATAATATATCATGATGATAATTTAAATATTTAACTAATTTTTCGAGTATGCATAAATTTAGATGGCAAGATCATCCGCTTTTGAATAGTAAATGTATATAATATATCACGATGATAATTTAAATATATAACTAATTTTTCGAGTATGCATAAATTTAGATGGCAAGATCATCCGCTTTTGAATAGTAAATGTATATAATATATCACGATGATAATTTAAATATATAACTAATTTTTCAAGTATGCATAAATTTAGAGGGCAAGATCAACTGCTTTTGAATAATAAATGTATATAATATATTACGATGATAATTTAAATATATAACTAATTTTTTGAGATAAGTTTAAAAAAAAATTTATGCCTTTTTCAAAAAAATAAGAAAGGAGAAATAACTATAGTGTATCAATTTGATTTGATTTATCTTTTAAAAATTATGATTATAAGGAGAAACATATGTAATGTATCAATTTGATTTGATTTTATTATTATAAAAAGCATATATTTAAATATTTATTTTACACGTGTTATTGAATAAAATAATATTTCGAAATAGCCGTCCCTCTTGACTTTTCCACATGCCAACAACCTCCAATTCTGAATTTTAATATCATTGGTATCTTTTTGCATTATTTTAAAAAGATTCATAGTTATGTATGTTGATAAGGTGTTTCAATATTCTTATAATCACATGGATATTATGATATATTTAAAAATATACATAAAATGATATTCTACGAAGAATTATCTTACAAAAATTACATATATTTTATTTATAAATATATGTATTCTATTTTTTTTGTTGATATCTTATGAAAAATATAATACATATAATAGAAATATCATTTGTGATAAGTTATGTATAGAATCTCTCCTCTTAGATTTTGCGCTACGGGATAACCGAGCAAATTGTCTTGTCTTGTCTTGTGTTGAACTCATTTTTCATAATAAGAATTAAGTTGTATTATAGTATAATTCGAAATTTATAATTCCTTACAACTCACTAATAAAGACACTGAGATTGATTTAAAAAATAGGTCCAAATAACTCTCTCCTCTCTCCTATCTTGCATCAATAGCGGCATTCTCTTACGAAAAAAAAAAATAATCTGATCCACAAAACATTTCATATTAGTAAATTCGGAAAAAAATCAAACCTTAAAGAGTGTGATGATAACGTTTCATGACGGATCATATTTCAAGGGACGTGAGACAGACGATTACGCCAAGCACCATAGTTCAAAGGGTATAATATAGATAACTACTACAAATATTAATAACTACTTCTATTATTTAAACTCGTAACTTATAAATCACCTAGAGACAACTACGACTCGAAAGAATATTCAATCATATTTTAATACTATAAAATACCAACTTCCAATAATTCAGATTTTTTCTAATCTTTCAATTTGCATATGCAATTATGAGCTTTTTATTACTATTAACATAATAATACAGTTCCCATGTGTCTCTATTGACTCTTTATCTGTCAACATATGGCCTTCAAAAGTTCAAATTTTTGCCTATTAATTCACACTACCTTCCAATTTCTTTCATTAACCATACTCTGCTCTTTTCACTCCACAAAACTCCATTAAAACACCACCAAAAAACACAAATAAACAATCATTTTTTTAGCAGAAAGTTCAGATTTTTCTATGTGAATCCAAAATCTTTGTTGAAAGTCAGCCAAAAGGGATTTTGAAGAAGGCAAAGTTGCAGAGGAGAAAAAATCAAGGATGGGTTATGGAGAAGAAGTTGATTCAGGCCATGCAAGGCTACATGAACTAGGATACAAACAAGAACTGAAAAGAGACCTTTCGTAAATACCCATTTCATAATTTCTTGAAAAAAATAAAAAAAATTCAATCTTTTTTGATTTTTTTGATTATTTGCTTATTGGGTTTTTTTGGGTTGTTGGGGTTTTGTTTTATTGCAGGGTGTTGTCGAATTTTGCGTTTTCGTTTTCTGTTGTATCAGTGCTTACTGGTTTGAATACATTGATGGGTACTGGTTTGAATTTTGGTGGGCCTGTTTCTTATGTTTATGGGTGGCTAATTGCTGGCGCATTTACACTGTTTGTTGGAATGTCAATGGCTGAGATTTGTTCTTCTTATCCAACTTCTGGGGGTCTTTATTATTGGAGTGCTAAGCTTGCTGGTCCAAGCTGGGCACCTTTTGCTTCTTGGATCACTGGCTGGTAATTTTTTTTGCTTTCTTGTTTAGTCTTTGCATTGTTTCTGTCTGAGTTGGTTTGTGATGTTTGGAGTTTATAGTATTTTGGAGTAGTTAGGATTTTGTGTTTCTGAGTTGTGAACTCTATTATTGGAATGCTAAGCTTGCTGGCCCAAGTGGGGGCACCTTTTGCTTCTTTAATCACTGGCTTGACTTTTTTTTTTTGCTTTTCTTGTTTAGTCTTTAAATTGTTTCTGTTGAGTTAGTTTGTGATGTTTGGTTCTTTATAGTATTTTGGAATAGTCTGAGGGGTAGTTAGGATTTTGAGTTTGTGAGGTCTGAATTTTGTTATTGGAGTGCTAAGTTTGCTGGTCCAAATGGGGCACGTTTTGCTTCTTGGATCACTGCCTGGTAATTTTTTGCTTTTCTTGTTTAGTCTTCACATTGTTTCTATTTAGTTAGTTTGTGACGTTTAGAGTTTGTAGTATTTTGGAATAGTTAGAGGAGGAGTTAGATTTTGAGTTTATGAGTTTTGAATTATAGGAAAGACAGTTGACCGAGTTCTGAATAAGTTATTTATATATCAAGTGGATTTTTTACACAATTATAGGATCTAGATCGAAGGTATTGGATTCTGCGGAACTGGTAGACCGGCTTGTAGCTCTGCCCCTAGGAACAGTCATATCATCTGTTTGTGAAAAGAATGAATTTTTAGAGAAGTCATTTATTATAAATACAAGAACTCCCTCAAAGTTTCTATTGGGTTAGTTTGTAATATTTGGAGTTTGTAGTATTTTGGAACAGTCAAGGCCAAGTTAGGACTTTGGGTTTATGAGTTCTGGATTCTAGGAAAGACAGTTTCTGAGTTCTAACTAGTTTCACTTCCTTACAAGTATTCTTGTGTTAATCAATCAGCAGTCTGTGTGCGACTGGTCCCCAGGGTCTCAGATATCAAAGAGAAAAATTCAAGAACGGGACTGACATTCCACCCTTACTTGGTGGTATGTTAGCCTGGATTAACTTTTCATATTGATTGTCAAGCTTTTTGCATTAGCATGATTTTATTAATCTTACAAGTATGTGAACTTGTATGTAAGCTCCACATAACTGGTCCTAGTGCGGATAAAGGAGGAGCATTACAGACTTACAGTAGGTTGACGGTCAATATTAAATACTCAAATTATGAGAAATCCCCGTAGTAATGAATCCTCTATGAATTGAAATGAAATAGGCCCAGATGGAGCCGAATACATAGATGATTCATGTTTTTGACCCCTACTAGTTTGGGTTTTAGGCATATCTGGTTGATGCTGATTTGCTTAACCAACAGTGCATTTTGGAGACAATAACTCGATCCATAGTTATGGCTTGATTTCCGCAAAAGACTGTTCTTCCGCAATTCGTAGTGTGAGAAATGCACAATCAGAATATGGTTTTGACTTTTGACAGTCAGAATGATTGTTCCTGAAAAATTGCAGCTGCGCTAGGACGACCTACATTGTCAATGAGTTCCTTAACTGTATGTGCGAGTTTAAGTTCAACGCTGCTAGACATTAAGTTCCTTAGAAGTAATATATTCATTGGGTAGAGCAAACAAAGAGAAGGTAAAATAGGAGGAAACACACACAAAAAAATGAAAATATTGAACTCTATGGGATGCTGACCGCTTTTTAATTCTTTACTTGGTACCTTTTATCATCTACTGACTTTCAACATTAGATTTAGCAGAATATGAAATTATTGAACTATCTTCTGGTAGCTCATGCCTCCGTCAATTGTGCAACATTCAGCTGTCATAAGTTACTTTTTGACAAAACTGATGGTTTCTACATTCATATTGCTTCTTTCTCAGTAAAATTTCTTTCCTTTTTGTATTGCAGGTTCAACATTGTTGGTCAGGTATCGTGAAGAATTACTCGTATTACCATTCACAGTTTTAGTGTCTAATTGGGCTTAGCTGATTCACCATATAAAACAACTCTAATCCAAAACGGAAAATCTGATTGCAGTGGGCTGTCACAACAAGTGTAGATTATTCATTGGCTCAGTTAGTTCAGGTAATAATTCTTCTTAGCACTGGTGGATTAAATGGTGGCGGATATCAGGCCTCCAAATATGTGGTTATCGCCCTTCACGCTGGAATTCTGCTTTTACATGCTTTATTAAACAGTCTTCCGATTTCATGGCTGTCCTTCATTGGACAACTAGCCGCTGCATGGAATGTTTTAGGTACATTGGAGTAAACCTTTGTCTATTCGACCTCATAATTATGGAATTACGCGTTCGCTCAGCTCTGAATTAATGATTACAGGTGTCTTTCTTCTTATGATTTTGATCCCAATGGTTGCAACAGAAAGAGCTAGCGCTAAATTTGTGTTTACTAACTTCAACACTGTC-AATGAGGATGGAATCAACAATAAACTCTACATCTTCGTCCTCGGACTTCTCATGAGCCAGTATACATTGACAGGTTATGACGCTTCTGCCCATATGGTGAGTTCTGCATACTTTTCCTCTGCAATACTAATTGTTTTCCTTTATTTTCTAAAGTATGTCGACTGGAGCCATGGTGTGAACTCATTTTGCTGGTTACTCTTTTAAAATTATTAATTACAGAGGCCCTTCAAATTCCACAAGAAGTGATGAAAAATACTGTTCCTTTTAAACTACTGTGACAGTGTTAAGTTATGGATTTGTAACGAGACGAGGCTCAGATATCTGAGAATACAAAATGAACTTTCCTTGTCTTTGAACATCAGGAGCGGATTACATATAGCAGCAACTCAACTGAATGCTACTTGAAACTTAATTTCCTCCTCCATTAGGCCTAGTGAAACTAGGAACATCTCGTTCAAAGTGATTGTAAGTAAATTTTTTATTTTGTTCTTATCCACTGACGCTGTTTTGCAGACGGAAGAAACCAAAGATGCAGATAAGAATGGACC</genome_strand>
        <mrna_strand>CGTTTAAAATTAGTTCTTCAAATGATGATTCTAGACTTAGAGAATTGGGTTACAAGCAAGAACTCTATCGTGGTCTTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATTTCAAACTTTTCTTTGACATTTTGCATTGTATCAGTTCTTACTGGTATATCAACATTGTATAACCAGGCCCTAACTTTTGGTGGGCCTGTTACTATTGTTTGTGGATGGCCCATAATTGGATTAATGACACTTATTGTGGGCCTTTCTATGGCTGAAATATGTTCTGCTTATCCAACTTCTGCTGGGCTTTATTATTGGAGTGCTAAATTGGCTGGAAACAAGATTGGCCCATTTGCTGCTTGGATTACTGGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAACATTGTTGGTCAG..............................................................................................................TGGGCTGTCACAACAAGTGTAGATTATTCATTGGCTCAGTTAGTTCAGGTAATAATTCTTCTTAGCACTGGTGGATTAAATGGTGGCGGATATCAGGCCTCCAAATATGTGGTTATCGCCCTTCACGCTGGAATTCTGCTTTTACATGCTTTATTAAACAGTCTTCCGATTTCATGGCTGTCCTTCATTGGACAACTAGCCGCTGCATGGAATGTTTTAG..................................................................................GTGTCTTTCTTCTTATGATTTTGATCCCAATGGTTGCAACAGAAAGAGCTAGCGCTAAATTTGTGTTTACTAACTTCAACACTGTCAAATGAGGATGGAATCAACAATAAACTCTACATCTTCGTCCTCGGACTTCTCATGAACCAGTATACATTGACAGGTTATGACGCTTCTGCCCCTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAAAAAACCAAAGATGCAGATAAGAATGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320436" ref_strand="+" ref_description="SGN-E320436 [cTOB-22-J7]">
      <seq>acaaaattagttcttcaaatgatgattctagacttagagaattgggttacaagcaagaactctatcgtggtcttacgctcatttcaaacttttctttgacattttgcattgtatcagttcttactggtatatcaacattgtataaccaggccctaacttttggtgggcctgttactattgtttgtggatggcccataattggattaatgacacttattgtgggcctttctatggctgaaatatggtctgcttatccaacttctgctgggctttattattggagtgctaaattggctggaaacaagattggcccatttgctgcttggattactggctggttcaacattgttggtcagtgggctgtcacaacaagtgtagattattcattggctcagttagttcaggtaataattcttcttagcactggtggattaaatggtggcggatatcaggcctccaaatatgtggttatcgcccttcacgctggaattctgcttttacatgctttattaaacagtcttccgatttcatggctgtccttcattggacaactanccgctgcatggaatgtgttaggtgtctttcttcttatgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="70846" stop="78991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71146" g_stop="71221" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71222" i_stop="71816" i_length="595">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71817" g_stop="72077" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="337" r_length="261" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72078" i_stop="78237" i_length="6160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78238" g_stop="78256" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="356" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78257" i_stop="78366" i_length="110">
            <donor d_prob="0.522" d_score="0.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78367" g_stop="78586" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="576" r_length="220" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78587" i_stop="78668" i_length="82">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.650" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78669" g_stop="78691" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="599" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E320436" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71146" e_stop="71221"/>
          <exon e_start="71817" e_stop="72077"/>
          <exon e_start="78238" e_stop="78256"/>
          <exon e_start="78367" e_stop="78586"/>
          <exon e_start="78669" e_stop="78691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATTAGTTCTTCAAATGATGATTCTAGACTTAGAGAATTGGGTTACAAGCAAGAACTCTATCGTGGTCTTACGTAAGTCGTTCTTTCTTTATTTTTCGTTCATCTATTTGATTTATCGAGGACATGATGTTTCTAGATAGTTTAGTGGTGTCCCACTTACTCTTATAGTTTCTTGTTCTTTGAGTTTGGTTATTTTGGGGGGTTTTTTCACACTTCGATTGTCGTTGTATCTTGTTATGACTATTGTTTAGGATGATTCAACGGATTGTTTATAGTACTTTGTGATGATTGTCTTCATTTCGATTATTTCTTTCCCTATATTACCTTAGACTATATCTTTTTTTTTGGTCAAAAGTCCATCAGAAACAATCTCTCTACCTCTAAGCTAGTTATAAAATTTGCATACACTCTACTGTCTCTAAATCCTATTTTGTATAATTACAATTGTCGTTATATAGGCACAATTAGTAGATCCAATATTTTGAATACTATGAGTTTGAGTTCAAACACACCCTATTTCAAAATAATAAATGGGTTCAAGATCTATATACAAGGTTTGAACCGAAGCTTCTGAATTCGGATGAACTATGAATGACCTTTTATGTGCAGTCTGACTGACTATTCGTGTAAAGATCCTAACTTGTTGTTTTTTGGGCTTTATGAACAGGCTCATTTCAAACTTTTCTTTGACATTTTGCATTGTATCAGTTCTTACTGGTATATCAACATTGTATAACCAGGCCCTAACTTTTGGTGGGCCTGTTACTATTGTTTGTGGATGGCCCATAATTGGATTAATGACACTTATTGTGGGCCTTTCTATGGCTGAAATATGTTCTGCTTATCCAACTTCTGCTGGGCTTTATTATTGGAGTGCTAAATTGGCTGGAAACAAGATTGGCCCATTTGCTGCTTGGATTACTGGCTGGTAAGGCCCATTTCCTTTTCCTCTCTAGTTAAATGTTAAATTTAACATTTTGTGATTTTTCATATTTTTTAGTAATATGTTCGAGAAGATAGGAAGGTGCGGAGGTCGAGGGAGGGTAGAAGGGTAGTAGGTAGTTTGTCGTATTTTCACATGGGAGAGGAAGGGTTTTGTCTCATCTTCTCATTGTTTATAATAGTCATTTCGATAAATTTTAAAGTGATAGAAAATAAACTGCAATCATAAATAAAATATAACGAAAACATAACTTTATTGATAAACATCTTATGATTCTTCTTTCATAAGATATTTATTCATTATTTGAGGGTTGTTTGTGTCGTATTTCTCGAACTAAGGTAATTTAAATTTGATCTCCTTAGGAATATTCCATGAATTTGCGTAATATTCGAGATGCCTTGTAAAGGGAATATACTACCTTTTATATAGGCATGAACTAACTGTTTAGGGTTGAGTACCTTCTAAGTACCTTATTTGAAAGTTGAACACATCTTGTAGAGTCCAATTAAAATTGAACGTATCTTGTAGAGTCTCACAAAATTTCAATGTCTACAATAGTATTATTTGATATTCGTGTTGTATCTCATTTTTTACTTCTATTTGTTGTCTTATTTGCTTTGTATATCTTGCTATTTTGTTGTACTTATTTTTGTTTTTCTAATCCTGATGCTTTGATTTTTGAGCTGGTGGACTATTAGGGTTGTCTGTTGTGGGTGTGTGTGTTAAGGTCTCTATTCTTGGTAAAATTTTTGAGTTTAATCAAATTATAGATTTTTTTTCTTAAAAAAAGAGCGATTATATATATTGATCTTAATGTCTTCGTATATAGTGCAAATATGTATTATTTGGGTAATTGAGACAGTTTACAAAATAGCGATAACGCGAGCTATGAATCACTTCACAATCTTGTAATTGAATCATCATGAAGTTTTATATATTAAATTTAAAACCTTACGACAATGACTATTTTTCAATTCAAAAGTAATTATTTATCTAAATAAATAATTTTTGCCATTTGATAACATATTTTAAATTAGTTATTGTCTCACCTTAAAGATGTGTCCTAGAGGACAGGTTTACTAATATAATATCATAAAACGCACACACATATGCATATAATTCCAAATAGTTATAATAATGTAGAATCGACAATTAATAGCTTTTCACATTTTGTATGATAATGACTTTTAAAGTAAACAATATAATGTCATTTTAAGTTAAGTAGTTGTTTGATATATACTTTGATATTTAATTGATTGCTCATGTTTTTTTTGTGATATAAAAATCGTGTAAGGACCAAATAAATAGATTAACGTAGATATGTTTGAATGATAGATATTTTTAAAAAATTTTTTTTTTGACTTTTTTTTTCTTTCGAGGTGTTATTAGTCTCACCATGTGAAAATGAGACGAAACTGTCTACTTTTGTGTTTAGATCATTGTCCAATCACTTGAATTTGTTGATACAATGTGTGAAAAGGAGATGAAATTGTACACTTTTGTGTTCGTATCATTGTCCAATCCACTGAGAATGTTAATTCGATCAACTTAGTAATTTCGAATTCGAAGTATGAATATATTAAAAAAAATCTTATTACGAAACACTTCTCCCTTTTGAAATATGAGAAGATAAAAAAAATATCACTAACATGTCAAAAAGAACTACTTTTTTTTTGACATTAAAATACATGTATTTTTTGTGGTTTATTCATTCATTTTTTTTAAAAAATATCTAACACATGGTACCATTAGTACTTCTTTTGGGGTTTAGCCAAAAAGAGAATGATATAAAATATTGACTTTATTGTAATAAATCTTAGGAGTACTAAAGTTGGATTTTCTTTAACTAAAATAAACAGAATTGTGATATATATCAATATGATGATTATGATATTAATTAGTTGATATATACTCCAAGAGAAATATTATATAACGTTCATAGAAAAATAAATAGTACAAAGCACAAAATATAACAAATATCAACATATATACGTTGAAAAACATAAATTTTCTTTTGAATTTGTTTCAAAAAATCAATTATATGCATAAATTTAGAGGGCAAGGTCATCCGCTTTTGAATAATAAATGTATATAATATATCATGATGATAATTTAAATATTTAACTAATTTTTCGAGTATGCATAAATTTAGATGGCAAGATCATCCGCTTTTGAATAGTAAATGTATATAATATATCACGATGATAATTTAAATATATAACTAATTTTTCGAGTATGCATAAATTTAGATGGCAAGATCATCCGCTTTTGAATAGTAAATGTATATAATATATCACGATGATAATTTAAATATATAACTAATTTTTCAAGTATGCATAAATTTAGAGGGCAAGATCAACTGCTTTTGAATAATAAATGTATATAATATATTACGATGATAATTTAAATATATAACTAATTTTTTGAGATAAGTTTAAAAAAAAATTTATGCCTTTTTCAAAAAAATAAGAAAGGAGAAATAACTATAGTGTATCAATTTGATTTGATTTATCTTTTAAAAATTATGATTATAAGGAGAAACATATGTAATGTATCAATTTGATTTGATTTTATTATTATAAAAAGCATATATTTAAATATTTATTTTACACGTGTTATTGAATAAAATAATATTTCGAAATAGCCGTCCCTCTTGACTTTTCCACATGCCAACAACCTCCAATTCTGAATTTTAATATCATTGGTATCTTTTTGCATTATTTTAAAAAGATTCATAGTTATGTATGTTGATAAGGTGTTTCAATATTCTTATAATCACATGGATATTATGATATATTTAAAAATATACATAAAATGATATTCTACGAAGAATTATCTTACAAAAATTACATATATTTTATTTATAAATATATGTATTCTATTTTTTTTGTTGATATCTTATGAAAAATATAATACATATAATAGAAATATCATTTGTGATAAGTTATGTATAGAATCTCTCCTCTTAGATTTTGCGCTACGGGATAACCGAGCAAATTGTCTTGTCTTGTCTTGTGTTGAACTCATTTTTCATAATAAGAATTAAGTTGTATTATAGTATAATTCGAAATTTATAATTCCTTACAACTCACTAATAAAGACACTGAGATTGATTTAAAAAATAGGTCCAAATAACTCTCTCCTCTCTCCTATCTTGCATCAATAGCGGCATTCTCTTACGAAAAAAAAAAATAATCTGATCCACAAAACATTTCATATTAGTAAATTCGGAAAAAAATCAAACCTTAAAGAGTGTGATGATAACGTTTCATGACGGATCATATTTCAAGGGACGTGAGACAGACGATTACGCCAAGCACCATAGTTCAAAGGGTATAATATAGATAACTACTACAAATATTAATAACTACTTCTATTATTTAAACTCGTAACTTATAAATCACCTAGAGACAACTACGACTCGAAAGAATATTCAATCATATTTTAATACTATAAAATACCAACTTCCAATAATTCAGATTTTTTCTAATCTTTCAATTTGCATATGCAATTATGAGCTTTTTATTACTATTAACATAATAATACAGTTCCCATGTGTCTCTATTGACTCTTTATCTGTCAACATATGGCCTTCAAAAGTTCAAATTTTTGCCTATTAATTCACACTACCTTCCAATTTCTTTCATTAACCATACTCTGCTCTTTTCACTCCACAAAACTCCATTAAAACACCACCAAAAAACACAAATAAACAATCATTTTTTTAGCAGAAAGTTCAGATTTTTCTATGTGAATCCAAAATCTTTGTTGAAAGTCAGCCAAAAGGGATTTTGAAGAAGGCAAAGTTGCAGAGGAGAAAAAATCAAGGATGGGTTATGGAGAAGAAGTTGATTCAGGCCATGCAAGGCTACATGAACTAGGATACAAACAAGAACTGAAAAGAGACCTTTCGTAAATACCCATTTCATAATTTCTTGAAAAAAATAAAAAAAATTCAATCTTTTTTGATTTTTTTGATTATTTGCTTATTGGGTTTTTTTGGGTTGTTGGGGTTTTGTTTTATTGCAGGGTGTTGTCGAATTTTGCGTTTTCGTTTTCTGTTGTATCAGTGCTTACTGGTTTGAATACATTGATGGGTACTGGTTTGAATTTTGGTGGGCCTGTTTCTTATGTTTATGGGTGGCTAATTGCTGGCGCATTTACACTGTTTGTTGGAATGTCAATGGCTGAGATTTGTTCTTCTTATCCAACTTCTGGGGGTCTTTATTATTGGAGTGCTAAGCTTGCTGGTCCAAGCTGGGCACCTTTTGCTTCTTGGATCACTGGCTGGTAATTTTTTTTGCTTTCTTGTTTAGTCTTTGCATTGTTTCTGTCTGAGTTGGTTTGTGATGTTTGGAGTTTATAGTATTTTGGAGTAGTTAGGATTTTGTGTTTCTGAGTTGTGAACTCTATTATTGGAATGCTAAGCTTGCTGGCCCAAGTGGGGGCACCTTTTGCTTCTTTAATCACTGGCTTGACTTTTTTTTTTTGCTTTTCTTGTTTAGTCTTTAAATTGTTTCTGTTGAGTTAGTTTGTGATGTTTGGTTCTTTATAGTATTTTGGAATAGTCTGAGGGGTAGTTAGGATTTTGAGTTTGTGAGGTCTGAATTTTGTTATTGGAGTGCTAAGTTTGCTGGTCCAAATGGGGCACGTTTTGCTTCTTGGATCACTGCCTGGTAATTTTTTGCTTTTCTTGTTTAGTCTTCACATTGTTTCTATTTAGTTAGTTTGTGACGTTTAGAGTTTGTAGTATTTTGGAATAGTTAGAGGAGGAGTTAGATTTTGAGTTTATGAGTTTTGAATTATAGGAAAGACAGTTGACCGAGTTCTGAATAAGTTATTTATATATCAAGTGGATTTTTTACACAATTATAGGATCTAGATCGAAGGTATTGGATTCTGCGGAACTGGTAGACCGGCTTGTAGCTCTGCCCCTAGGAACAGTCATATCATCTGTTTGTGAAAAGAATGAATTTTTAGAGAAGTCATTTATTATAAATACAAGAACTCCCTCAAAGTTTCTATTGGGTTAGTTTGTAATATTTGGAGTTTGTAGTATTTTGGAACAGTCAAGGCCAAGTTAGGACTTTGGGTTTATGAGTTCTGGATTCTAGGAAAGACAGTTTCTGAGTTCTAACTAGTTTCACTTCCTTACAAGTATTCTTGTGTTAATCAATCAGCAGTCTGTGTGCGACTGGTCCCCAGGGTCTCAGATATCAAAGAGAAAAATTCAAGAACGGGACTGACATTCCACCCTTACTTGGTGGTATGTTAGCCTGGATTAACTTTTCATATTGATTGTCAAGCTTTTTGCATTAGCATGATTTTATTAATCTTACAAGTATGTGAACTTGTATGTAAGCTCCACATAACTGGTCCTAGTGCGGATAAAGGAGGAGCATTACAGACTTACAGTAGGTTGACGGTCAATATTAAATACTCAAATTATGAGAAATCCCCGTAGTAATGAATCCTCTATGAATTGAAATGAAATAGGCCCAGATGGAGCCGAATACATAGATGATTCATGTTTTTGACCCCTACTAGTTTGGGTTTTAGGCATATCTGGTTGATGCTGATTTGCTTAACCAACAGTGCATTTTGGAGACAATAACTCGATCCATAGTTATGGCTTGATTTCCGCAAAAGACTGTTCTTCCGCAATTCGTAGTGTGAGAAATGCACAATCAGAATATGGTTTTGACTTTTGACAGTCAGAATGATTGTTCCTGAAAAATTGCAGCTGCGCTAGGACGACCTACATTGTCAATGAGTTCCTTAACTGTATGTGCGAGTTTAAGTTCAACGCTGCTAGACATTAAGTTCCTTAGAAGTAATATATTCATTGGGTAGAGCAAACAAAGAGAAGGTAAAATAGGAGGAAACACACACAAAAAAATGAAAATATTGAACTCTATGGGATGCTGACCGCTTTTTAATTCTTTACTTGGTACCTTTTATCATCTACTGACTTTCAACATTAGATTTAGCAGAATATGAAATTATTGAACTATCTTCTGGTAGCTCATGCCTCCGTCAATTGTGCAACATTCAGCTGTCATAAGTTACTTTTTGACAAAACTGATGGTTTCTACATTCATATTGCTTCTTTCTCAGTAAAATTTCTTTCCTTTTTGTATTGCAGGTTCAACATTGTTGGTCAGGTATCGTGAAGAATTACTCGTATTACCATTCACAGTTTTAGTGTCTAATTGGGCTTAGCTGATTCACCATATAAAACAACTCTAATCCAAAACGGAAAATCTGATTGCAGTGGGCTGTCACAACAAGTGTAGATTATTCATTGGCTCAGTTAGTTCAGGTAATAATTCTTCTTAGCACTGGTGGATTAAATGGTGGCGGATATCAGGCCTCCAAATATGTGGTTATCGCCCTTCACGCTGGAATTCTGCTTTTACATGCTTTATTAAACAGTCTTCCGATTTCATGGCTGTCCTTCATTGGACAACTAGCCGCTGCATGGAATGTTTTAGGTACATTGGAGTAAACCTTTGTCTATTCGACCTCATAATTATGGAATTACGCGTTCGCTCAGCTCTGAATTAATGATTACAGGTGTCTTTCTTCTTATGATTTTG</genome_strand>
        <mrna_strand>ACAAAATTAGTTCTTCAAATGATGATTCTAGACTTAGAGAATTGGGTTACAAGCAAGAACTCTATCGTGGTCTTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATTTCAAACTTTTCTTTGACATTTTGCATTGTATCAGTTCTTACTGGTATATCAACATTGTATAACCAGGCCCTAACTTTTGGTGGGCCTGTTACTATTGTTTGTGGATGGCCCATAATTGGATTAATGACACTTATTGTGGGCCTTTCTATGGCTGAAATATGGTCTGCTTATCCAACTTCTGCTGGGCTTTATTATTGGAGTGCTAAATTGGCTGGAAACAAGATTGGCCCATTTGCTGCTTGGATTACTGGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAACATTGTTGGTCAG..............................................................................................................TGGGCTGTCACAACAAGTGTAGATTATTCATTGGCTCAGTTAGTTCAGGTAATAATTCTTCTTAGCACTGGTGGATTAAATGGTGGCGGATATCAGGCCTCCAAATATGTGGTTATCGCCCTTCACGCTGGAATTCTGCTTTTACATGCTTTATTAAACAGTCTTCCGATTTCATGGCTGTCCTTCATTGGACAACTANCCGCTGCATGGAATGTGTTAG..................................................................................GTGTCTTTCTTCTTATGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321987" ref_strand="+" ref_description="SGN-E321987 [cTOB-29-F1]">
      <seq>acaaaattaattcttcaaatgatgattctagacttacagaattgggtgacaagcaagaactctatcgtggtcttacgctcatttcaaacttttctttgacattttgcattgtatcagatcttactggtatatcaacattgaataaccaggccctaacttttggtgggcctgttactattgtttgtggatggcccataattggattaatgacacttattgtgggcctttctatggctgaaatatgttctgcttatccaacttctgctgggctttattattggagtgctaaattggctggaaacaacattggcccatttgctgcttggattactggctggatcaacattgatggacagcgggctgtcacaacaagtgtatattattcattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="70846" stop="78700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71146" g_stop="71221" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71222" i_stop="71816" i_length="595">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.844" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71817" g_stop="72077" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="337" r_length="261" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72078" i_stop="78237" i_length="6160">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78238" g_stop="78256" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="356" r_length="19" r_score="0.842"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78257" i_stop="78366" i_length="110">
            <donor d_prob="0.522" d_score="0.00"/>
            <acceptor a_prob="0.687" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78367" g_stop="78400" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="390" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E321987" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71146" e_stop="71221"/>
          <exon e_start="71817" e_stop="72077"/>
          <exon e_start="78238" e_stop="78256"/>
          <exon e_start="78367" e_stop="78400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATTAGTTCTTCAAATGATGATTCTAGACTTAGAGAATTGGGTTACAAGCAAGAACTCTATCGTGGTCTTACGTAAGTCGTTCTTTCTTTATTTTTCGTTCATCTATTTGATTTATCGAGGACATGATGTTTCTAGATAGTTTAGTGGTGTCCCACTTACTCTTATAGTTTCTTGTTCTTTGAGTTTGGTTATTTTGGGGGGTTTTTTCACACTTCGATTGTCGTTGTATCTTGTTATGACTATTGTTTAGGATGATTCAACGGATTGTTTATAGTACTTTGTGATGATTGTCTTCATTTCGATTATTTCTTTCCCTATATTACCTTAGACTATATCTTTTTTTTTGGTCAAAAGTCCATCAGAAACAATCTCTCTACCTCTAAGCTAGTTATAAAATTTGCATACACTCTACTGTCTCTAAATCCTATTTTGTATAATTACAATTGTCGTTATATAGGCACAATTAGTAGATCCAATATTTTGAATACTATGAGTTTGAGTTCAAACACACCCTATTTCAAAATAATAAATGGGTTCAAGATCTATATACAAGGTTTGAACCGAAGCTTCTGAATTCGGATGAACTATGAATGACCTTTTATGTGCAGTCTGACTGACTATTCGTGTAAAGATCCTAACTTGTTGTTTTTTGGGCTTTATGAACAGGCTCATTTCAAACTTTTCTTTGACATTTTGCATTGTATCAGTTCTTACTGGTATATCAACATTGTATAACCAGGCCCTAACTTTTGGTGGGCCTGTTACTATTGTTTGTGGATGGCCCATAATTGGATTAATGACACTTATTGTGGGCCTTTCTATGGCTGAAATATGTTCTGCTTATCCAACTTCTGCTGGGCTTTATTATTGGAGTGCTAAATTGGCTGGAAACAAGATTGGCCCATTTGCTGCTTGGATTACTGGCTGGTAAGGCCCATTTCCTTTTCCTCTCTAGTTAAATGTTAAATTTAACATTTTGTGATTTTTCATATTTTTTAGTAATATGTTCGAGAAGATAGGAAGGTGCGGAGGTCGAGGGAGGGTAGAAGGGTAGTAGGTAGTTTGTCGTATTTTCACATGGGAGAGGAAGGGTTTTGTCTCATCTTCTCATTGTTTATAATAGTCATTTCGATAAATTTTAAAGTGATAGAAAATAAACTGCAATCATAAATAAAATATAACGAAAACATAACTTTATTGATAAACATCTTATGATTCTTCTTTCATAAGATATTTATTCATTATTTGAGGGTTGTTTGTGTCGTATTTCTCGAACTAAGGTAATTTAAATTTGATCTCCTTAGGAATATTCCATGAATTTGCGTAATATTCGAGATGCCTTGTAAAGGGAATATACTACCTTTTATATAGGCATGAACTAACTGTTTAGGGTTGAGTACCTTCTAAGTACCTTATTTGAAAGTTGAACACATCTTGTAGAGTCCAATTAAAATTGAACGTATCTTGTAGAGTCTCACAAAATTTCAATGTCTACAATAGTATTATTTGATATTCGTGTTGTATCTCATTTTTTACTTCTATTTGTTGTCTTATTTGCTTTGTATATCTTGCTATTTTGTTGTACTTATTTTTGTTTTTCTAATCCTGATGCTTTGATTTTTGAGCTGGTGGACTATTAGGGTTGTCTGTTGTGGGTGTGTGTGTTAAGGTCTCTATTCTTGGTAAAATTTTTGAGTTTAATCAAATTATAGATTTTTTTTCTTAAAAAAAGAGCGATTATATATATTGATCTTAATGTCTTCGTATATAGTGCAAATATGTATTATTTGGGTAATTGAGACAGTTTACAAAATAGCGATAACGCGAGCTATGAATCACTTCACAATCTTGTAATTGAATCATCATGAAGTTTTATATATTAAATTTAAAACCTTACGACAATGACTATTTTTCAATTCAAAAGTAATTATTTATCTAAATAAATAATTTTTGCCATTTGATAACATATTTTAAATTAGTTATTGTCTCACCTTAAAGATGTGTCCTAGAGGACAGGTTTACTAATATAATATCATAAAACGCACACACATATGCATATAATTCCAAATAGTTATAATAATGTAGAATCGACAATTAATAGCTTTTCACATTTTGTATGATAATGACTTTTAAAGTAAACAATATAATGTCATTTTAAGTTAAGTAGTTGTTTGATATATACTTTGATATTTAATTGATTGCTCATGTTTTTTTTGTGATATAAAAATCGTGTAAGGACCAAATAAATAGATTAACGTAGATATGTTTGAATGATAGATATTTTTAAAAAATTTTTTTTTTGACTTTTTTTTTCTTTCGAGGTGTTATTAGTCTCACCATGTGAAAATGAGACGAAACTGTCTACTTTTGTGTTTAGATCATTGTCCAATCACTTGAATTTGTTGATACAATGTGTGAAAAGGAGATGAAATTGTACACTTTTGTGTTCGTATCATTGTCCAATCCACTGAGAATGTTAATTCGATCAACTTAGTAATTTCGAATTCGAAGTATGAATATATTAAAAAAAATCTTATTACGAAACACTTCTCCCTTTTGAAATATGAGAAGATAAAAAAAATATCACTAACATGTCAAAAAGAACTACTTTTTTTTTGACATTAAAATACATGTATTTTTTGTGGTTTATTCATTCATTTTTTTTAAAAAATATCTAACACATGGTACCATTAGTACTTCTTTTGGGGTTTAGCCAAAAAGAGAATGATATAAAATATTGACTTTATTGTAATAAATCTTAGGAGTACTAAAGTTGGATTTTCTTTAACTAAAATAAACAGAATTGTGATATATATCAATATGATGATTATGATATTAATTAGTTGATATATACTCCAAGAGAAATATTATATAACGTTCATAGAAAAATAAATAGTACAAAGCACAAAATATAACAAATATCAACATATATACGTTGAAAAACATAAATTTTCTTTTGAATTTGTTTCAAAAAATCAATTATATGCATAAATTTAGAGGGCAAGGTCATCCGCTTTTGAATAATAAATGTATATAATATATCATGATGATAATTTAAATATTTAACTAATTTTTCGAGTATGCATAAATTTAGATGGCAAGATCATCCGCTTTTGAATAGTAAATGTATATAATATATCACGATGATAATTTAAATATATAACTAATTTTTCGAGTATGCATAAATTTAGATGGCAAGATCATCCGCTTTTGAATAGTAAATGTATATAATATATCACGATGATAATTTAAATATATAACTAATTTTTCAAGTATGCATAAATTTAGAGGGCAAGATCAACTGCTTTTGAATAATAAATGTATATAATATATTACGATGATAATTTAAATATATAACTAATTTTTTGAGATAAGTTTAAAAAAAAATTTATGCCTTTTTCAAAAAAATAAGAAAGGAGAAATAACTATAGTGTATCAATTTGATTTGATTTATCTTTTAAAAATTATGATTATAAGGAGAAACATATGTAATGTATCAATTTGATTTGATTTTATTATTATAAAAAGCATATATTTAAATATTTATTTTACACGTGTTATTGAATAAAATAATATTTCGAAATAGCCGTCCCTCTTGACTTTTCCACATGCCAACAACCTCCAATTCTGAATTTTAATATCATTGGTATCTTTTTGCATTATTTTAAAAAGATTCATAGTTATGTATGTTGATAAGGTGTTTCAATATTCTTATAATCACATGGATATTATGATATATTTAAAAATATACATAAAATGATATTCTACGAAGAATTATCTTACAAAAATTACATATATTTTATTTATAAATATATGTATTCTATTTTTTTTGTTGATATCTTATGAAAAATATAATACATATAATAGAAATATCATTTGTGATAAGTTATGTATAGAATCTCTCCTCTTAGATTTTGCGCTACGGGATAACCGAGCAAATTGTCTTGTCTTGTCTTGTGTTGAACTCATTTTTCATAATAAGAATTAAGTTGTATTATAGTATAATTCGAAATTTATAATTCCTTACAACTCACTAATAAAGACACTGAGATTGATTTAAAAAATAGGTCCAAATAACTCTCTCCTCTCTCCTATCTTGCATCAATAGCGGCATTCTCTTACGAAAAAAAAAAATAATCTGATCCACAAAACATTTCATATTAGTAAATTCGGAAAAAAATCAAACCTTAAAGAGTGTGATGATAACGTTTCATGACGGATCATATTTCAAGGGACGTGAGACAGACGATTACGCCAAGCACCATAGTTCAAAGGGTATAATATAGATAACTACTACAAATATTAATAACTACTTCTATTATTTAAACTCGTAACTTATAAATCACCTAGAGACAACTACGACTCGAAAGAATATTCAATCATATTTTAATACTATAAAATACCAACTTCCAATAATTCAGATTTTTTCTAATCTTTCAATTTGCATATGCAATTATGAGCTTTTTATTACTATTAACATAATAATACAGTTCCCATGTGTCTCTATTGACTCTTTATCTGTCAACATATGGCCTTCAAAAGTTCAAATTTTTGCCTATTAATTCACACTACCTTCCAATTTCTTTCATTAACCATACTCTGCTCTTTTCACTCCACAAAACTCCATTAAAACACCACCAAAAAACACAAATAAACAATCATTTTTTTAGCAGAAAGTTCAGATTTTTCTATGTGAATCCAAAATCTTTGTTGAAAGTCAGCCAAAAGGGATTTTGAAGAAGGCAAAGTTGCAGAGGAGAAAAAATCAAGGATGGGTTATGGAGAAGAAGTTGATTCAGGCCATGCAAGGCTACATGAACTAGGATACAAACAAGAACTGAAAAGAGACCTTTCGTAAATACCCATTTCATAATTTCTTGAAAAAAATAAAAAAAATTCAATCTTTTTTGATTTTTTTGATTATTTGCTTATTGGGTTTTTTTGGGTTGTTGGGGTTTTGTTTTATTGCAGGGTGTTGTCGAATTTTGCGTTTTCGTTTTCTGTTGTATCAGTGCTTACTGGTTTGAATACATTGATGGGTACTGGTTTGAATTTTGGTGGGCCTGTTTCTTATGTTTATGGGTGGCTAATTGCTGGCGCATTTACACTGTTTGTTGGAATGTCAATGGCTGAGATTTGTTCTTCTTATCCAACTTCTGGGGGTCTTTATTATTGGAGTGCTAAGCTTGCTGGTCCAAGCTGGGCACCTTTTGCTTCTTGGATCACTGGCTGGTAATTTTTTTTGCTTTCTTGTTTAGTCTTTGCATTGTTTCTGTCTGAGTTGGTTTGTGATGTTTGGAGTTTATAGTATTTTGGAGTAGTTAGGATTTTGTGTTTCTGAGTTGTGAACTCTATTATTGGAATGCTAAGCTTGCTGGCCCAAGTGGGGGCACCTTTTGCTTCTTTAATCACTGGCTTGACTTTTTTTTTTTGCTTTTCTTGTTTAGTCTTTAAATTGTTTCTGTTGAGTTAGTTTGTGATGTTTGGTTCTTTATAGTATTTTGGAATAGTCTGAGGGGTAGTTAGGATTTTGAGTTTGTGAGGTCTGAATTTTGTTATTGGAGTGCTAAGTTTGCTGGTCCAAATGGGGCACGTTTTGCTTCTTGGATCACTGCCTGGTAATTTTTTGCTTTTCTTGTTTAGTCTTCACATTGTTTCTATTTAGTTAGTTTGTGACGTTTAGAGTTTGTAGTATTTTGGAATAGTTAGAGGAGGAGTTAGATTTTGAGTTTATGAGTTTTGAATTATAGGAAAGACAGTTGACCGAGTTCTGAATAAGTTATTTATATATCAAGTGGATTTTTTACACAATTATAGGATCTAGATCGAAGGTATTGGATTCTGCGGAACTGGTAGACCGGCTTGTAGCTCTGCCCCTAGGAACAGTCATATCATCTGTTTGTGAAAAGAATGAATTTTTAGAGAAGTCATTTATTATAAATACAAGAACTCCCTCAAAGTTTCTATTGGGTTAGTTTGTAATATTTGGAGTTTGTAGTATTTTGGAACAGTCAAGGCCAAGTTAGGACTTTGGGTTTATGAGTTCTGGATTCTAGGAAAGACAGTTTCTGAGTTCTAACTAGTTTCACTTCCTTACAAGTATTCTTGTGTTAATCAATCAGCAGTCTGTGTGCGACTGGTCCCCAGGGTCTCAGATATCAAAGAGAAAAATTCAAGAACGGGACTGACATTCCACCCTTACTTGGTGGTATGTTAGCCTGGATTAACTTTTCATATTGATTGTCAAGCTTTTTGCATTAGCATGATTTTATTAATCTTACAAGTATGTGAACTTGTATGTAAGCTCCACATAACTGGTCCTAGTGCGGATAAAGGAGGAGCATTACAGACTTACAGTAGGTTGACGGTCAATATTAAATACTCAAATTATGAGAAATCCCCGTAGTAATGAATCCTCTATGAATTGAAATGAAATAGGCCCAGATGGAGCCGAATACATAGATGATTCATGTTTTTGACCCCTACTAGTTTGGGTTTTAGGCATATCTGGTTGATGCTGATTTGCTTAACCAACAGTGCATTTTGGAGACAATAACTCGATCCATAGTTATGGCTTGATTTCCGCAAAAGACTGTTCTTCCGCAATTCGTAGTGTGAGAAATGCACAATCAGAATATGGTTTTGACTTTTGACAGTCAGAATGATTGTTCCTGAAAAATTGCAGCTGCGCTAGGACGACCTACATTGTCAATGAGTTCCTTAACTGTATGTGCGAGTTTAAGTTCAACGCTGCTAGACATTAAGTTCCTTAGAAGTAATATATTCATTGGGTAGAGCAAACAAAGAGAAGGTAAAATAGGAGGAAACACACACAAAAAAATGAAAATATTGAACTCTATGGGATGCTGACCGCTTTTTAATTCTTTACTTGGTACCTTTTATCATCTACTGACTTTCAACATTAGATTTAGCAGAATATGAAATTATTGAACTATCTTCTGGTAGCTCATGCCTCCGTCAATTGTGCAACATTCAGCTGTCATAAGTTACTTTTTGACAAAACTGATGGTTTCTACATTCATATTGCTTCTTTCTCAGTAAAATTTCTTTCCTTTTTGTATTGCAGGTTCAACATTGTTGGTCAGGTATCGTGAAGAATTACTCGTATTACCATTCACAGTTTTAGTGTCTAATTGGGCTTAGCTGATTCACCATATAAAACAACTCTAATCCAAAACGGAAAATCTGATTGCAGTGGGCTGTCACAACAAGTGTAGATTATTCATTGG</genome_strand>
        <mrna_strand>ACAAAATTAATTCTTCAAATGATGATTCTAGACTTACAGAATTGGGTGACAAGCAAGAACTCTATCGTGGTCTTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATTTCAAACTTTTCTTTGACATTTTGCATTGTATCAGATCTTACTGGTATATCAACATTGAATAACCAGGCCCTAACTTTTGGTGGGCCTGTTACTATTGTTTGTGGATGGCCCATAATTGGATTAATGACACTTATTGTGGGCCTTTCTATGGCTGAAATATGTTCTGCTTATCCAACTTCTGCTGGGCTTTATTATTGGAGTGCTAAATTGGCTGGAAACAACATTGGCCCATTTGCTGCTTGGATTACTGGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACATTGATGGACAG..............................................................................................................CGGGCTGTCACAACAAGTGTATATTATTCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316437" ref_strand="+" ref_description="SGN-E316437 [cTOA-25-D10]">
      <seq>gctgagatttgttcttcttatccaacttctgggggtctttattattggagtgctaagcttgctggtccaagctgggcaccttttgcttcttggatcactggctggttcaacattgttggtcagtgggctgtcacaacaagtgtagattattcattggctcagttagttcaggtaataattcttcttagcactggtggattaaatggtggcggatatcaggcctccaaatatgtggttatcgcccttcacgctggaattctgcttttacatgctttattaaacagtcttccgatttcatggctgtccttcattggacaactagccgctgcatggaatgttttangtgtctttcttcttatgattttgatcccaatggttgcaacagaaagagctagcgctaaatttgtgtttactaacttcaacactgtcgatgaggatggaatcaacaataaactctacatcttcgtcctcggacttctcatgagccagtatacattgacaggttatgacgcttctgcccctatgacggaagaaaccaaagatgccgataagaatggaccaaaaggaattgtaagtgctattggcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="75979" stop="79630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76279" g_stop="76382" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76383" i_stop="78237" i_length="1855">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78238" g_stop="78256" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="123" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78257" i_stop="78366" i_length="110">
            <donor d_prob="0.522" d_score="0.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78367" g_stop="78586" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="343" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78587" i_stop="78668" i_length="82">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78669" g_stop="78850" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="525" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78851" i_stop="79267" i_length="417">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79268" g_stop="79330" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="588" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E316437" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76279" e_stop="76382"/>
          <exon e_start="78238" e_stop="78256"/>
          <exon e_start="78367" e_stop="78586"/>
          <exon e_start="78669" e_stop="78850"/>
          <exon e_start="79268" e_stop="79330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAGATTTGTTCTTCTTATCCAACTTCTGGGGGTCTTTATTATTGGAGTGCTAAGCTTGCTGGTCCAAGCTGGGCACCTTTTGCTTCTTGGATCACTGGCTGGTAATTTTTTTTGCTTTCTTGTTTAGTCTTTGCATTGTTTCTGTCTGAGTTGGTTTGTGATGTTTGGAGTTTATAGTATTTTGGAGTAGTTAGGATTTTGTGTTTCTGAGTTGTGAACTCTATTATTGGAATGCTAAGCTTGCTGGCCCAAGTGGGGGCACCTTTTGCTTCTTTAATCACTGGCTTGACTTTTTTTTTTTGCTTTTCTTGTTTAGTCTTTAAATTGTTTCTGTTGAGTTAGTTTGTGATGTTTGGTTCTTTATAGTATTTTGGAATAGTCTGAGGGGTAGTTAGGATTTTGAGTTTGTGAGGTCTGAATTTTGTTATTGGAGTGCTAAGTTTGCTGGTCCAAATGGGGCACGTTTTGCTTCTTGGATCACTGCCTGGTAATTTTTTGCTTTTCTTGTTTAGTCTTCACATTGTTTCTATTTAGTTAGTTTGTGACGTTTAGAGTTTGTAGTATTTTGGAATAGTTAGAGGAGGAGTTAGATTTTGAGTTTATGAGTTTTGAATTATAGGAAAGACAGTTGACCGAGTTCTGAATAAGTTATTTATATATCAAGTGGATTTTTTACACAATTATAGGATCTAGATCGAAGGTATTGGATTCTGCGGAACTGGTAGACCGGCTTGTAGCTCTGCCCCTAGGAACAGTCATATCATCTGTTTGTGAAAAGAATGAATTTTTAGAGAAGTCATTTATTATAAATACAAGAACTCCCTCAAAGTTTCTATTGGGTTAGTTTGTAATATTTGGAGTTTGTAGTATTTTGGAACAGTCAAGGCCAAGTTAGGACTTTGGGTTTATGAGTTCTGGATTCTAGGAAAGACAGTTTCTGAGTTCTAACTAGTTTCACTTCCTTACAAGTATTCTTGTGTTAATCAATCAGCAGTCTGTGTGCGACTGGTCCCCAGGGTCTCAGATATCAAAGAGAAAAATTCAAGAACGGGACTGACATTCCACCCTTACTTGGTGGTATGTTAGCCTGGATTAACTTTTCATATTGATTGTCAAGCTTTTTGCATTAGCATGATTTTATTAATCTTACAAGTATGTGAACTTGTATGTAAGCTCCACATAACTGGTCCTAGTGCGGATAAAGGAGGAGCATTACAGACTTACAGTAGGTTGACGGTCAATATTAAATACTCAAATTATGAGAAATCCCCGTAGTAATGAATCCTCTATGAATTGAAATGAAATAGGCCCAGATGGAGCCGAATACATAGATGATTCATGTTTTTGACCCCTACTAGTTTGGGTTTTAGGCATATCTGGTTGATGCTGATTTGCTTAACCAACAGTGCATTTTGGAGACAATAACTCGATCCATAGTTATGGCTTGATTTCCGCAAAAGACTGTTCTTCCGCAATTCGTAGTGTGAGAAATGCACAATCAGAATATGGTTTTGACTTTTGACAGTCAGAATGATTGTTCCTGAAAAATTGCAGCTGCGCTAGGACGACCTACATTGTCAATGAGTTCCTTAACTGTATGTGCGAGTTTAAGTTCAACGCTGCTAGACATTAAGTTCCTTAGAAGTAATATATTCATTGGGTAGAGCAAACAAAGAGAAGGTAAAATAGGAGGAAACACACACAAAAAAATGAAAATATTGAACTCTATGGGATGCTGACCGCTTTTTAATTCTTTACTTGGTACCTTTTATCATCTACTGACTTTCAACATTAGATTTAGCAGAATATGAAATTATTGAACTATCTTCTGGTAGCTCATGCCTCCGTCAATTGTGCAACATTCAGCTGTCATAAGTTACTTTTTGACAAAACTGATGGTTTCTACATTCATATTGCTTCTTTCTCAGTAAAATTTCTTTCCTTTTTGTATTGCAGGTTCAACATTGTTGGTCAGGTATCGTGAAGAATTACTCGTATTACCATTCACAGTTTTAGTGTCTAATTGGGCTTAGCTGATTCACCATATAAAACAACTCTAATCCAAAACGGAAAATCTGATTGCAGTGGGCTGTCACAACAAGTGTAGATTATTCATTGGCTCAGTTAGTTCAGGTAATAATTCTTCTTAGCACTGGTGGATTAAATGGTGGCGGATATCAGGCCTCCAAATATGTGGTTATCGCCCTTCACGCTGGAATTCTGCTTTTACATGCTTTATTAAACAGTCTTCCGATTTCATGGCTGTCCTTCATTGGACAACTAGCCGCTGCATGGAATGTTTTAGGTACATTGGAGTAAACCTTTGTCTATTCGACCTCATAATTATGGAATTACGCGTTCGCTCAGCTCTGAATTAATGATTACAGGTGTCTTTCTTCTTATGATTTTGATCCCAATGGTTGCAACAGAAAGAGCTAGCGCTAAATTTGTGTTTACTAACTTCAACACTGTCAATGAGGATGGAATCAACAATAAACTCTACATCTTCGTCCTCGGACTTCTCATGAGCCAGTATACATTGACAGGTTATGACGCTTCTGCCCATATGGTGAGTTCTGCATACTTTTCCTCTGCAATACTAATTGTTTTCCTTTATTTTCTAAAGTATGTCGACTGGAGCCATGGTGTGAACTCATTTTGCTGGTTACTCTTTTAAAATTATTAATTACAGAGGCCCTTCAAATTCCACAAGAAGTGATGAAAAATACTGTTCCTTTTAAACTACTGTGACAGTGTTAAGTTATGGATTTGTAACGAGACGAGGCTCAGATATCTGAGAATACAAAATGAACTTTCCTTGTCTTTGAACATCAGGAGCGGATTACATATAGCAGCAACTCAACTGAATGCTACTTGAAACTTAATTTCCTCCTCCATTAGGCCTAGTGAAACTAGGAACATCTCGTTCAAAGTGATTGTAAGTAAATTTTTTATTTTGTTCTTATCCACTGACGCTGTTTTGCAGACGGAAGAAACCAAAGATGCAGATAAGAATGGACCAAAAGGAATTGTAAGTGCTATTGGCATA</genome_strand>
        <mrna_strand>GCTGAGATTTGTTCTTCTTATCCAACTTCTGGGGGTCTTTATTATTGGAGTGCTAAGCTTGCTGGTCCAAGCTGGGCACCTTTTGCTTCTTGGATCACTGGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAACATTGTTGGTCAG..............................................................................................................TGGGCTGTCACAACAAGTGTAGATTATTCATTGGCTCAGTTAGTTCAGGTAATAATTCTTCTTAGCACTGGTGGATTAAATGGTGGCGGATATCAGGCCTCCAAATATGTGGTTATCGCCCTTCACGCTGGAATTCTGCTTTTACATGCTTTATTAAACAGTCTTCCGATTTCATGGCTGTCCTTCATTGGACAACTAGCCGCTGCATGGAATGTTTTAN..................................................................................GTGTCTTTCTTCTTATGATTTTGATCCCAATGGTTGCAACAGAAAGAGCTAGCGCTAAATTTGTGTTTACTAACTTCAACACTGTCGATGAGGATGGAATCAACAATAAACTCTACATCTTCGTCCTCGGACTTCTCATGAGCCAGTATACATTGACAGGTTATGACGCTTCTGCCCCTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAAGAAACCAAAGATGCCGATAAGAATGGACCAAAAGGAATTGTAAGTGCTATTGGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424025" ref_strand="+" ref_description="SGN-E424025 [STM-42-N10]">
      <seq>gttagctcatgtctctgtcagttgtgcaacattcaactgtcataagttactttttgacaaaactgacggtttctacattcatattgcttctttctcagtaaaatttctttccttttcatattgcaggttcaacattgttggtcaggtatcgtgaagaattactcgtatttccattcacaattttagtgtctaattgggcttagctgcttcaccatataaaacaactctaatccactacggaaaatctgattgcagtgggctgtcacaacaagtgtagattattcattggctcagttagttcaggtgataattcttcttagcactggtggattaaatggtggcggatatcaggcctccaaatatgtggtcatcgccctccatgctttaattctgcttttacatgctttattaaacagtcttccgatttcatggttgtccttcattgggcaactagctgctgcatggaatgttttaggtgtctttcttcttatgattttgatcccaatggtcgcaacagaaagagctagcgctaaatttgtgtttactaacttcaatactgtncatgaggatggaatcaacaaataactctacatcttcgtcctcggacttctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="77812" stop="79108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78112" g_stop="78586" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78587" i_stop="78668" i_length="82">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.650" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78669" g_stop="78808" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="615" r_length="140" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E424025" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78112" e_stop="78586"/>
          <exon e_start="78669" e_stop="78808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGCTCATGCCTCCGTCAATTGTGCAACATTCAGCTGTCATAAGTTACTTTTTGACAAAACTGATGGTTTCTACATTCATATTGCTTCTTTCTCAGTAAAATTTCTTTCCTTTTTGTATTGCAGGTTCAACATTGTTGGTCAGGTATCGTGAAGAATTACTCGTATTACCATTCACAGTTTTAGTGTCTAATTGGGCTTAGCTGATTCACCATATAAAACAACTCTAATCCAAAACGGAAAATCTGATTGCAGTGGGCTGTCACAACAAGTGTAGATTATTCATTGGCTCAGTTAGTTCAGGTAATAATTCTTCTTAGCACTGGTGGATTAAATGGTGGCGGATATCAGGCCTCCAAATATGTGGTTATCGCCCTTCACGCTGGAATTCTGCTTTTACATGCTTTATTAAACAGTCTTCCGATTTCATGGCTGTCCTTCATTGGACAACTAGCCGCTGCATGGAATGTTTTAGGTACATTGGAGTAAACCTTTGTCTATTCGACCTCATAATTATGGAATTACGCGTTCGCTCAGCTCTGAATTAATGATTACAGGTGTCTTTCTTCTTATGATTTTGATCCCAATGGTTGCAACAGAAAGAGCTAGCGCTAAATTTGTGTTTACTAACTTCAACACTGTCAATGAGGATGGAATCAACAATAAACTCTACATCTTCGTCCTCGGACTTCTCATG</genome_strand>
        <mrna_strand>GTTAGCTCATGTCTCTGTCAGTTGTGCAACATTCAACTGTCATAAGTTACTTTTTGACAAAACTGACGGTTTCTACATTCATATTGCTTCTTTCTCAGTAAAATTTCTTTCCTTTTCATATTGCAGGTTCAACATTGTTGGTCAGGTATCGTGAAGAATTACTCGTATTTCCATTCACAATTTTAGTGTCTAATTGGGCTTAGCTGCTTCACCATATAAAACAACTCTAATCCACTACGGAAAATCTGATTGCAGTGGGCTGTCACAACAAGTGTAGATTATTCATTGGCTCAGTTAGTTCAGGTGATAATTCTTCTTAGCACTGGTGGATTAAATGGTGGCGGATATCAGGCCTCCAAATATGTGGTCATCGCCCTCCATGCTTTAATTCTGCTTTTACATGCTTTATTAAACAGTCTTCCGATTTCATGGTTGTCCTTCATTGGGCAACTAGCTGCTGCATGGAATGTTTTAG..................................................................................GTGTCTTTCTTCTTATGATTTTGATCCCAATGGTCGCAACAGAAAGAGCTAGCGCTAAATTTGTGTTTACTAACTTCAATACTGTNCATGAGGATGGAATCAACAAATAACTCTACATCTTCGTCCTCGGACTTCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451541" ref_strand="+" ref_description="SGN-E451541 [cSTS-13-D19]">
      <seq>cgagggttagcctcctggtctctgtcagttgtgccaacattcaactgtcataagttactttttgacaaaactgacggtttctacattcatattgcttctttctcagtaaaatttctttccttttcatattgcaggttcaacattgttggtcaggtatcgtgaagaattactcgtatttccattcacaattttagtgtctaattgggcttagctgcttcaccatataaaacaactctaatccactacggaaaatctgattgcagtgggctgtcacaacaagtgtagattattcattggctcagttagttcaggtgataattcttcttagcactggtggattaaatggtggcggatatcaggcctccaaatatgtggtcatcgccctccatgctttaattctgcttttacatgctttattaaacagtcttccgatttcatggttgtccttcattgggcaactagctgctgcatggaatgttttaggtgtctttcttcttatgattttgatcccaatggtcgcaacagaaagagctagcgctaaatttgtgtttactaacttcaatactgtcaatgaggatggaatcaacaataaactctacatcttcgtcctcggacttctcatgagccagtatacattgacaggttatgacgcttctgcccatatgacggaagaaaccaaagatgcagataagaatgggccaaaaagaattgtaagtgctattggcatatcaattcttgctggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="77812" stop="79647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78117" g_stop="78586" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="483" r_length="472" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78587" i_stop="78668" i_length="82">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.650" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78669" g_stop="78850" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="665" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78851" i_stop="79267" i_length="417">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79268" g_stop="79347" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="745" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E451541" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78117" e_stop="78586"/>
          <exon e_start="78669" e_stop="78850"/>
          <exon e_start="79268" e_stop="79347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAT-GCCTCCGTCAATTGTG-CAACATTCAGCTGTCATAAGTTACTTTTTGACAAAACTGATGGTTTCTACATTCATATTGCTTCTTTCTCAGTAAAATTTCTTTCCTTTTTGTATTGCAGGTTCAACATTGTTGGTCAGGTATCGTGAAGAATTACTCGTATTACCATTCACAGTTTTAGTGTCTAATTGGGCTTAGCTGATTCACCATATAAAACAACTCTAATCCAAAACGGAAAATCTGATTGCAGTGGGCTGTCACAACAAGTGTAGATTATTCATTGGCTCAGTTAGTTCAGGTAATAATTCTTCTTAGCACTGGTGGATTAAATGGTGGCGGATATCAGGCCTCCAAATATGTGGTTATCGCCCTTCACGCTGGAATTCTGCTTTTACATGCTTTATTAAACAGTCTTCCGATTTCATGGCTGTCCTTCATTGGACAACTAGCCGCTGCATGGAATGTTTTAGGTACATTGGAGTAAACCTTTGTCTATTCGACCTCATAATTATGGAATTACGCGTTCGCTCAGCTCTGAATTAATGATTACAGGTGTCTTTCTTCTTATGATTTTGATCCCAATGGTTGCAACAGAAAGAGCTAGCGCTAAATTTGTGTTTACTAACTTCAACACTGTCAATGAGGATGGAATCAACAATAAACTCTACATCTTCGTCCTCGGACTTCTCATGAGCCAGTATACATTGACAGGTTATGACGCTTCTGCCCATATGGTGAGTTCTGCATACTTTTCCTCTGCAATACTAATTGTTTTCCTTTATTTTCTAAAGTATGTCGACTGGAGCCATGGTGTGAACTCATTTTGCTGGTTACTCTTTTAAAATTATTAATTACAGAGGCCCTTCAAATTCCACAAGAAGTGATGAAAAATACTGTTCCTTTTAAACTACTGTGACAGTGTTAAGTTATGGATTTGTAACGAGACGAGGCTCAGATATCTGAGAATACAAAATGAACTTTCCTTGTCTTTGAACATCAGGAGCGGATTACATATAGCAGCAACTCAACTGAATGCTACTTGAAACTTAATTTCCTCCTCCATTAGGCCTAGTGAAACTAGGAACATCTCGTTCAAAGTGATTGTAAGTAAATTTTTTATTTTGTTCTTATCCACTGACGCTGTTTTGCAGACGGAAGAAACCAAAGATGCAGATAAGAATGGACCAAAAGGAATTGTAAGTGCTATTGGCATATCAATTCTTGCTGGCTG</genome_strand>
        <mrna_strand>CTCCTGGTCTCTGTCAGTTGTGCCAACATTCAACTGTCATAAGTTACTTTTTGACAAAACTGACGGTTTCTACATTCATATTGCTTCTTTCTCAGTAAAATTTCTTTCCTTTTCATATTGCAGGTTCAACATTGTTGGTCAGGTATCGTGAAGAATTACTCGTATTTCCATTCACAATTTTAGTGTCTAATTGGGCTTAGCTGCTTCACCATATAAAACAACTCTAATCCACTACGGAAAATCTGATTGCAGTGGGCTGTCACAACAAGTGTAGATTATTCATTGGCTCAGTTAGTTCAGGTGATAATTCTTCTTAGCACTGGTGGATTAAATGGTGGCGGATATCAGGCCTCCAAATATGTGGTCATCGCCCTCCATGCTTTAATTCTGCTTTTACATGCTTTATTAAACAGTCTTCCGATTTCATGGTTGTCCTTCATTGGGCAACTAGCTGCTGCATGGAATGTTTTAG..................................................................................GTGTCTTTCTTCTTATGATTTTGATCCCAATGGTCGCAACAGAAAGAGCTAGCGCTAAATTTGTGTTTACTAACTTCAATACTGTCAATGAGGATGGAATCAACAATAAACTCTACATCTTCGTCCTCGGACTTCTCATGAGCCAGTATACATTGACAGGTTATGACGCTTCTGCCCATATG.................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAAGAAACCAAAGATGCAGATAAGAATGGGCCAAAAAGAATTGTAAGTGCTATTGGCATATCAATTCTTGCTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278839" ref_strand="+" ref_description="SGN-E278839 [cLER-2-B18]">
      <seq>aagaatggaccaaaaggaattgtaagtgctattggcatatcaattcttgctggctgggcttacatacttggtataacctttgcagttacagatatcccacatctgttagataaaaacaatgattctggtggctatgctattgctcaaatcttttatgacgtattcaagagtagatatggcagtggtgttggtggaattgtttgcttaagtgttattgctgttgccgtattcttttgtggtatgagctcattaactagcaactcgaggatggcttatgcattctccagagatggagcaatgccatattcgtcgttctggcataaagtaaacaagcatgaggttccgctaaatgcagtctggacgtcagcttttatagcattttgcatggcattgacgtctcttggaagcttggtagcatttcaagccatgacatctatagcgacaatcgggctttacattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="78992" stop="80591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79292" g_stop="79557" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79558" i_stop="79637" i_length="80">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79638" g_stop="79767" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="396" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79768" i_stop="80225" i_length="458">
            <donor d_prob="0.635" d_score="1.00"/>
            <acceptor a_prob="0.540" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80226" g_stop="80291" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="462" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E278839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79292" e_stop="79557"/>
          <exon e_start="79638" e_stop="79767"/>
          <exon e_start="80226" e_stop="80291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGGACCAAAAGGAATTGTAAGTGCTATTGGCATATCAATTCTTGCTGGCTGGGCTTACATACTTGGTATAACCTTTGCAGTTACAGATATCCCACATCTGTTAGATAAAAACAATGATTCTGGTGGCTATGCTATTGCTCAAATCTTTTATGACGTATTCAAGAGTAGATATGGCAGTGGTGTTGGTGGAATTGTTTGCTTAAGTGTTATTGCTGTTGCCGTATTCTTTTGTGGTATGAGCTCATTAACTAGCAACTCGAGGTAAATATACTTGATCGGAAATTCTCCTTCTATAACTCAAGATTCTTTAGAAGAGCCACTGATGGAAAATATCTTTGCAGGATGGCTTATGCATTCTCCAGAGATGGAGCAATGCCATATTCGTCGTTCTGGCATAAAGTAAACAAGCATGAGGTTCCGCTAAATGCAGTCTGGACGTCAGCTTTTATAGCATTTTGCATGGCATTGACGGTACAAAGTTCATACTTTTGCATCTTGAAAGACCACATTAAACCTCCCCTACACCGACAATACCCTTAAAAAAATCTGAGCAAAATAAGAACATACGATTCATATCAGAAAATTACTCTACTTATTACCTAGGCATAATACATATATAAACAGATGCTCAAACTTGGTCTTGGCTGGCAAGTAAACACTCTAAGTTTGAGTATGCACAATTAAACCCCTCAACTCGGCTCCATTGTGTCACGTCAGTGTCAAGTGTCAACGTAACACAATGGGGATGAGTTGGAGTGTTAAGTTGTCAGCTGAAACCAAATTGAGATGTCTAAATGTGCACTCTCAAAGTTAGAGTGCCTACTTGTCAGCATGCCTATTACTTAATATGCTTTCTTGATTCATCAATCTGCTTGTTTCGCGCCCTTCCAGTTACTAATACACTCTTTTTTCGTCTATTTTAACTATAGTCTCTTGGAAGCTTGGTAGCATTTCAAGCCATGACATCTATAGCGACAATCGGGCTTTACATTGCT</genome_strand>
        <mrna_strand>AAGAATGGACCAAAAGGAATTGTAAGTGCTATTGGCATATCAATTCTTGCTGGCTGGGCTTACATACTTGGTATAACCTTTGCAGTTACAGATATCCCACATCTGTTAGATAAAAACAATGATTCTGGTGGCTATGCTATTGCTCAAATCTTTTATGACGTATTCAAGAGTAGATATGGCAGTGGTGTTGGTGGAATTGTTTGCTTAAGTGTTATTGCTGTTGCCGTATTCTTTTGTGGTATGAGCTCATTAACTAGCAACTCGAG................................................................................GATGGCTTATGCATTCTCCAGAGATGGAGCAATGCCATATTCGTCGTTCTGGCATAAAGTAAACAAGCATGAGGTTCCGCTAAATGCAGTCTGGACGTCAGCTTTTATAGCATTTTGCATGGCATTGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTTGGAAGCTTGGTAGCATTTCAAGCCATGACATCTATAGCGACAATCGGGCTTTACATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424026" ref_strand="-" ref_description="SGN-E424026 [STM-42-N10]">
      <seq>tcaagagtagatatggcagtggtgttgtgggaattgtttgcttaggtgttattgctgttgccgtattcttttgtggtatgagctcattaactagcaactcgaggatggcttatgcattctcccgagatggagcaatgccatattcgtcgttctggcataaagtaaacaagcatgaggttccgctaaatgcagtctggacgtcagcctttatagcattttgcatggcattgacgtctctcggaagcttggtagcatttcaagccatgacatctatagcgacaatcgggctttacattgcttatgccttgccaatcctgtttcgagtgactctagctcgaaagtccttcactccaggtcctttcaacttgggaagctacggtatcgttgtaggttgggttgcagtattctgggtcgcgctcatctctgtgctcttctctttgcctattgcctaccctattacagatcaaactctcaactatactccagtcgcggtcggtggccttgtcattcttgttgtttcttcatggatcttcagtgctaggcattggtttaaaggtcctattaccaatataggcaactctagtgaagaagcataagtagagagaattcttttgtaattacacaatgctgatagcggataatagatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="+" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="79155" stop="80934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79455" g_stop="79557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79558" i_stop="79637" i_length="80">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79638" g_stop="79767" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="233" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79768" i_stop="80225" i_length="458">
            <donor d_prob="0.635" d_score="0.98"/>
            <acceptor a_prob="0.540" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80226" g_stop="80644" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="650" r_length="417" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="+" ref_id="SGN-E424026" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424026" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79455" e_stop="79557"/>
          <exon e_start="79638" e_stop="79767"/>
          <exon e_start="80226" e_stop="80644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGTAGATATGGCAGTGGTGTTGGTGGAATTGTTTGCTTAAGTGTTATTGCTGTTGCCGTATTCTTTTGTGGTATGAGCTCATTAACTAGCAACTCGAGGTAAATATACTTGATCGGAAATTCTCCTTCTATAACTCAAGATTCTTTAGAAGAGCCACTGATGGAAAATATCTTTGCAGGATGGCTTATGCATTCTCCAGAGATGGAGCAATGCCATATTCGTCGTTCTGGCATAAAGTAAACAAGCATGAGGTTCCGCTAAATGCAGTCTGGACGTCAGCTTTTATAGCATTTTGCATGGCATTGACGGTACAAAGTTCATACTTTTGCATCTTGAAAGACCACATTAAACCTCCCCTACACCGACAATACCCTTAAAAAAATCTGAGCAAAATAAGAACATACGATTCATATCAGAAAATTACTCTACTTATTACCTAGGCATAATACATATATAAACAGATGCTCAAACTTGGTCTTGGCTGGCAAGTAAACACTCTAAGTTTGAGTATGCACAATTAAACCCCTCAACTCGGCTCCATTGTGTCACGTCAGTGTCAAGTGTCAACGTAACACAATGGGGATGAGTTGGAGTGTTAAGTTGTCAGCTGAAACCAAATTGAGATGTCTAAATGTGCACTCTCAAAGTTAGAGTGCCTACTTGTCAGCATGCCTATTACTTAATATGCTTTCTTGATTCATCAATCTGCTTGTTTCGCGCCCTTCCAGTTACTAATACACTCTTTTTTCGTCTATTTTAACTATAGTCTCTTGGAAGCTTGGTAGCATTTCAAGCCATGACATCTATAGCGACAATCGGGCTTTACATTGCTTATGCCTTGCCAATCCTGTTTCGAGTGACTCTAGCTCGAAAATCCTTCACTCCAGGTCCTTTCAACTTGGGAAGCTACGGGATCATTGTAGGTTGGGTTGCAGTATTTTGGGTCGCGCTCATCTCTGTGCTCTTCTCTTTGCCTGTTGCCTACCCTATTACAGATCAAACTCTCAACTATACTCCAGTCGCGGTTGTTGGCCTTGTCATTCTTGTTGTTTCTTCATGGATCTTCAGTGCTAGGCATTGGTTTAAAGGTCCTATTACCAATATAGGCAACTCTAGTGAAGAAGCATAAGTAGAGAAAAATTCTTTTGTAATTAGACAACGCTGAATTGCTGATAGCGGATTTAA</genome_strand>
        <mrna_strand>TCAAGAGTAGATATGGCAGTGGTGTTGTGGGAATTGTTTGCTTAGGTGTTATTGCTGTTGCCGTATTCTTTTGTGGTATGAGCTCATTAACTAGCAACTCGAG................................................................................GATGGCTTATGCATTCTCCCGAGATGGAGCAATGCCATATTCGTCGTTCTGGCATAAAGTAAACAAGCATGAGGTTCCGCTAAATGCAGTCTGGACGTCAGCCTTTATAGCATTTTGCATGGCATTGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCGGAAGCTTGGTAGCATTTCAAGCCATGACATCTATAGCGACAATCGGGCTTTACATTGCTTATGCCTTGCCAATCCTGTTTCGAGTGACTCTAGCTCGAAAGTCCTTCACTCCAGGTCCTTTCAACTTGGGAAGCTACGGTATCGTTGTAGGTTGGGTTGCAGTATTCTGGGTCGCGCTCATCTCTGTGCTCTTCTCTTTGCCTATTGCCTACCCTATTACAGATCAAACTCTCAACTATACTCCAGTCGCGGTCGGTGGCCTTGTCATTCTTGTTGTTTCTTCATGGATCTTCAGTGCTAGGCATTGGTTTAAAGGTCCTATTACCAATATAGGCAACTCTAGTGAAGAAGCATAAGTAGAG-AGAATTCTTTTGTAATTACACAATGCTG-ATAGCGGATAATAGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593020" ref_strand="+" ref_description="SGN-E593020 [36241]">
      <seq>ggagaagcaaaggcagaagatcaaaggagatgaagaacgtagtaaagacaaatctagaaaggacaaacaaaaatcgaaacgccgttctaatgaagagaaggagtcgggggaaaagcacaaaagcaagagccacaaacaaaaggataagttgaaaatcaagtttgaagagctatcaaaggatgattatttctctaagaacaatgaatttgctacttggctgaaagagaagaagaaattgttcttctcagatctttcatctgaggctgctcgtgatttattttccgactttgtcaaagaatggaacaagggaaagctcgacatccaatactacgagggaatcacaacagcaccacggtcatcccatgcttggaatataaaaaagtagcggaattccatgtctcttctacttaagtagcactagcagtgactctatctcagttgtcccatggttacgccttagccgcctattttttctttggtaaaaccgtcgtctttctgttggtaacaactatggtgacctaagtatagatgaggtttatgttatgtcaattactttggcaagcatcgctttcagtgtgaaattttctgcttgttgattctgaatgcatagaagccttttcgttcaagaaagacacgaagaaacaaaagacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="84435" stop="80693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84135" g_stop="84031" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84030" i_stop="82313" i_length="1718">
            <donor d_prob="0.960" d_score="0.78"/>
            <acceptor a_prob="0.969" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82312" g_stop="82257" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="151" r_length="56" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82256" i_stop="81472" i_length="785">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81471" g_stop="80994" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="625" r_length="474" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E593020" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84135" e_stop="84031"/>
          <exon e_start="82312" e_stop="82257"/>
          <exon e_start="81471" e_stop="80994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGCAAAAGGCAGAAGATCAAAGGAGATGAAGAAACTAGTAAAGACAAATCTAGAAAGGAGAAACACAAATCTCATAAATCGAAACGGCGTTCTAATGAAGGTAAAGTTGAGAAATTTACTGATTTTTAGTATGAAAATCTAGGGATTTTGTAAATCAATTGGTATTTTGAGTATTAAGGATTTGGGTGTTATTACTGTTGGTAGGGTTTGGTTTGATTAATTAGTGTAGTGAGTTTGAAAATGAATTGAGAAGTATTTTGCTGCTCACAGAGACCTTTTGTTCTTCTTTGTTTCACTTTGGTTAATTTTTACATGTGGGTTAGAAGATTTTGTCATTCGTTAACAAACTAAGCGAGAAATTACGGGGCAACCATATACTCTAAAGGAAAAAGAAACAAAAAGGTAACTTCTTGCAAGTAGCTTTACTGGTATTATGTAGGATTTTTGTTTTGTCCCCTAGTTCTATAGGGTGGTGGTTAGACTATCTGTGGCTATGTTATATGGGGGCGGAGTGTTGGTTGATCAAAAACTCTTATGAGCATATCTGATGAGATAAGAGTAGGAATAAAGGGACAAGGTGGGAGTGAACCCCGTGGTGGATAAGATGCGGGAAGTGAGGCTGACGGTTCGTACATGTGGAGGAGATGTGTAGATGTCCTAGTAAGGAGGTGTGAGAGGTTTGCCTTAGTGGGCTTGAGGAGGGGTAGAGGTTGGCCAAAGAAGTATTGGGGTGAGTTGATTAGCAGGATATGGCGCAAGTTTAGCTCACCGAGGACATGCCCCTTGATATGAGGGTGTGGAGGTCGAGAATTAGAGTAGAAGACTATTAGGTAGTCGGACACATTATTTCTTTTCCTTTCTCTGAGTATTAGTATTATTCTTGTTTCTTATTATCTTCAGATTTCTGTAACTACATGTTGTTTCTTTAGTCTCAATTATCTTATTATCTTGTTGTTGTTTCTGCAACTTTTTATCGTTCGTCAAGGTATATTAGAAACAAACTTTCTATCAAGGTAAGGGTAAGGTTTGCATACACTCTACCCTCTCTAGACCCCATGTGTGGGATTACACTAGGTTTGTTGTTGTTGTTGTACGCGAAAATTGTTAGGGGTAATGCAGGATTATTTTGTCTCGCATTTGGTTATGAGTGTTAATTAGTCCCAAGAACCATTCTGTACTGAATAGGCAGGGATTAGCTAGACCATATAAAAGGTGGGATAAGCTAATCCCATGGGATATCTTGTTTATACCATCCCAGTAACCAAACGACTCTGTGGAGTTCTGTTTGCTTTGGAAATGATGGGTACTTCCTAAGCCTTCTTCTTGGAAACCAAGTTCTTTGTTCCGATATATGATAGGATATCTTATACTACTAATAACTGAAAAGGTCTTTGATTTTTGTGCTCATTTTCTTCAAATAGAGATTGGGTCCCTGCAGTATTGTGATGGAGAGACTAATAGACCCAGCGATAGAGTTATGATTTTGTCCCTGAAATCTCATAGATTTCAGGCAATCTCTTCCAATTAAGACAAGTATCTAAGGCTGGAACACTGATTCTACTTAATATTACTAACCTCTGTTCTTCGTATTGTTAGGTCTCCCTTCATTGTTTAGTTTCACTCATGGTGATGTCGCGGATAACTTTATAGATCTATTTTATATGATTATTATAACAAGTGTGGATATCTGATTTTATGTTATTATGTATGTTTCTACATAGGGACATGTGTAACCTTAAATTGAATGGTTTCCCTATATGTTACTGGTTTGGTGCTTGAAGCTATGTTAGACACACTGACTCACTGGTATTGCTTCAGATAGGGAGTCGGGGGAAAAGCACAAAAGCAAGAGTCACAAACATAAGGATAAGTTGGTAAGTGCTTCTAGTTTTACACCTACGTCTTCTTCTTTTTAATTTCAAAAAGAGGTTTCTCAAGCTAATCCATTTACTGCCGATAAACCTCCAAGTAGTTTGTCCTCTTCCTCACTTGATTACTCTGTATTATATGTTGTGGAAGAAATATTTGTTCTCTGCTCATGTCGTTATTATACTTTGCGCTAATTTGTAGCTGTATGCAATTAGTGTTGGTTTAAGTTGGTGCTGAATTAGGTTGCTGCTTATTTTGCTTGAATTTATAGTTAGATCTAGTTTTCTGTCTGGTTTGAGCTTTCAGCTAACCTATGTTCGTTCTTGTAGCGAATCTTCATTAAAAGCGTTACAGGTCGATGCTTCAAAGTATGTCGTGTAAAGAAGACTTAATGTTTCATTTTCTTCAGTCGTGATATCTGAAATCTTGGTTGGGCCGTGGATGTTTTTGATTGAAAATAGATAATCCATGTGATATACAAAGTTATTCATATATCATATATATATATATATGGAGGAATCATGCGGTTAAAACTTAAAAACCTATTGATGACTGTTGTGGTGCAATCAGACTGGCTCAGGTTCACAGTAAGGTGATATTGTTGTATGTTGAATGTCATCCACTCTAACGGAGCTCGAAATGCTTGAAAATTTATTGGACTCTGTGCATTTAGCAGTAACGTAACTATTTCCCCTCGCGTTCCTTCTCCTGACTTACTTTATGAAAACAAGTAGGATATCCATTTCCATGTTTGATCTTTTATATGGTTTTGCTGTAACATCTTTCACAGAAAATCAAGTTTGAAGAACTATCAAAGGATGATTATTTCTCTAAGAACAATGAATTTGCTACCTGGCTGAAAGATAAGAAGAAATTGTTCTTCTCAGATCTTTCTTCTGAGGCTGCTCGTGATTTATTTTCCGACTTTGTCAAAGAATGGAACAAGGGAAAGCTTGACATCCAATACTACGAAGGAATCACAACAGCACCACGGTCATCCCATGCTTGGAACATAAAAAAGTAGCGGAATTCCATGTCTCTCTTCTACTTAAATAGCAGTAGCAGTGACTCTATCCCAGCTGTTCCATGGTTACGCGTTAGGCACCTTTTCTTATTCTTTGGTAAAATCGTCGTCTTTCTGTT-GTAACAACTACTTTGATCT-AGCATAGATGAGGTTTATGTTATGTCAAATACTTTGGCTAGCATCGCTTTCAGTGTGAAATTTTGCTGCTTGTTTGATTTTGAATGCATAGAAGCCTTTTCGTTCC</genome_strand>
        <mrna_strand>GGAGAAGC-AAAGGCAGAAGATCAAAGGAGATGAAGAACGTAGTAAAGACAAATCTAGAAA-G-G----ACAAA---CAAAAATCGAAACGCCGTTCTAATGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGTCGGGGGAAAAGCACAAAAGCAAGAGCCACAAACAAAAGGATAAGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCAAGTTTGAAGAGCTATCAAAGGATGATTATTTCTCTAAGAACAATGAATTTGCTACTTGGCTGAAAGAGAAGAAGAAATTGTTCTTCTCAGATCTTTCATCTGAGGCTGCTCGTGATTTATTTTCCGACTTTGTCAAAGAATGGAACAAGGGAAAGCTCGACATCCAATACTACGAGGGAATCACAACAGCACCACGGTCATCCCATGCTTGGAATATAAAAAAGTAGCGGAATTCCATG--TCTCTTCTACTTAAGTAGCACTAGCAGTGACTCTATCTCAGTTGTCCCATGGTTACGCCTTAGCCGCCTATT-TT-TTCTTTGGTAAAACCGTCGTCTTTCTGTTGGTAACAACTATGGTGACCTAAGTATAGATGAGGTTTATGTTATGTCAATTACTTTGGCAAGCATCGCTTTCAGTGTGAAATTTT-CTGCTTG-TTGATTCTGAATGCATAGAAGCCTTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352257" ref_strand="+" ref_description="SGN-E352257 [cTOS-13-F14]">
      <seq>acaaacataaggataagttgaaaatcaagtttgaagaactatcaaaggatgattatttctctaagaacaatgaatttgctacctggctgaaagataagaagaaattgttcttctcagatctttcttctgaggctgctcgtgatttattttccgactttgtcaaagaatggaacaagggaaagcttgacatccaatactacgaaggaatcacaacagcaccacggtcatcccatgcttggaacataaaaaagtagcggaattccatgtctctcttctacttaaatagcagtagcagtgactctatcccagctgttccatggttacgcgttaggcaccttttcttattctttggtaaaatcgtcgtctttctgttgtaacaactactttgatctagcatagatgaggtttatgttatgtcaaatactttggctagcatcgctttcagtgtgaaattttgctgcttgtttgattttgaatgcatagaagccttttcgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0122H05-yRdLe/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0122H05.2" temp_strand="-" temp_description="C05SLe0122H05.2  AC212309.2 htgs_phase:3 submitted_to_sgn_as:C05SLe0122H05 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="82576" stop="80693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82276" g_stop="82257" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82256" i_stop="81472" i_length="785">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81471" g_stop="80994" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="498" r_length="478" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0122H05.2" gen_strand="-" ref_id="SGN-E352257" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0122H05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82276" e_stop="82257"/>
          <exon e_start="81471" e_stop="80994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACATAAGGATAAGTTGGTAAGTGCTTCTAGTTTTACACCTACGTCTTCTTCTTTTTAATTTCAAAAAGAGGTTTCTCAAGCTAATCCATTTACTGCCGATAAACCTCCAAGTAGTTTGTCCTCTTCCTCACTTGATTACTCTGTATTATATGTTGTGGAAGAAATATTTGTTCTCTGCTCATGTCGTTATTATACTTTGCGCTAATTTGTAGCTGTATGCAATTAGTGTTGGTTTAAGTTGGTGCTGAATTAGGTTGCTGCTTATTTTGCTTGAATTTATAGTTAGATCTAGTTTTCTGTCTGGTTTGAGCTTTCAGCTAACCTATGTTCGTTCTTGTAGCGAATCTTCATTAAAAGCGTTACAGGTCGATGCTTCAAAGTATGTCGTGTAAAGAAGACTTAATGTTTCATTTTCTTCAGTCGTGATATCTGAAATCTTGGTTGGGCCGTGGATGTTTTTGATTGAAAATAGATAATCCATGTGATATACAAAGTTATTCATATATCATATATATATATATATGGAGGAATCATGCGGTTAAAACTTAAAAACCTATTGATGACTGTTGTGGTGCAATCAGACTGGCTCAGGTTCACAGTAAGGTGATATTGTTGTATGTTGAATGTCATCCACTCTAACGGAGCTCGAAATGCTTGAAAATTTATTGGACTCTGTGCATTTAGCAGTAACGTAACTATTTCCCCTCGCGTTCCTTCTCCTGACTTACTTTATGAAAACAAGTAGGATATCCATTTCCATGTTTGATCTTTTATATGGTTTTGCTGTAACATCTTTCACAGAAAATCAAGTTTGAAGAACTATCAAAGGATGATTATTTCTCTAAGAACAATGAATTTGCTACCTGGCTGAAAGATAAGAAGAAATTGTTCTTCTCAGATCTTTCTTCTGAGGCTGCTCGTGATTTATTTTCCGACTTTGTCAAAGAATGGAACAAGGGAAAGCTTGACATCCAATACTACGAAGGAATCACAACAGCACCACGGTCATCCCATGCTTGGAACATAAAAAAGTAGCGGAATTCCATGTCTCTCTTCTACTTAAATAGCAGTAGCAGTGACTCTATCCCAGCTGTTCCATGGTTACGCGTTAGGCACCTTTTCTTATTCTTTGGTAAAATCGTCGTCTTTCTGTTGTAACAACTACTTTGATCTAGCATAGATGAGGTTTATGTTATGTCAAATACTTTGGCTAGCATCGCTTTCAGTGTGAAATTTTGCTGCTTGTTTGATTTTGAATGCATAGAAGCCTTTTCGTTCC</genome_strand>
        <mrna_strand>ACAAACATAAGGATAAGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCAAGTTTGAAGAACTATCAAAGGATGATTATTTCTCTAAGAACAATGAATTTGCTACCTGGCTGAAAGATAAGAAGAAATTGTTCTTCTCAGATCTTTCTTCTGAGGCTGCTCGTGATTTATTTTCCGACTTTGTCAAAGAATGGAACAAGGGAAAGCTTGACATCCAATACTACGAAGGAATCACAACAGCACCACGGTCATCCCATGCTTGGAACATAAAAAAGTAGCGGAATTCCATGTCTCTCTTCTACTTAAATAGCAGTAGCAGTGACTCTATCCCAGCTGTTCCATGGTTACGCGTTAGGCACCTTTTCTTATTCTTTGGTAAAATCGTCGTCTTTCTGTTGTAACAACTACTTTGATCTAGCATAGATGAGGTTTATGTTATGTCAAATACTTTGGCTAGCATCGCTTTCAGTGTGAAATTTTGCTGCTTGTTTGATTTTGAATGCATAGAAGCCTTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>74</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1570" PGL_stop="4747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1570" e_stop="1971"/>
            <exon e_start="3388" e_stop="3489"/>
            <exon e_start="3577" e_stop="3675"/>
            <exon e_start="3765" e_stop="3920"/>
            <exon e_start="4502" e_stop="4747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="0.908"/>
          <exon-intron don_prob="0.996" acc_prob="0.978" e_score="0.941"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="0.949"/>
          <exon-intron don_prob="0.943" acc_prob="1.000" e_score="0.974"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="1570" e_stop="1971" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="1972" i_stop="3387" i_length="1416"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="3388" e_stop="3489" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.978">
            <gDNA_intron_boundary i_start="3490" i_stop="3576" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.949">
            <gDNA_exon_boundary e_start="3577" e_stop="3675" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3676" i_stop="3764" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="3765" e_stop="3920" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3921" i_stop="4501" i_length="581"/>
          </intron>
          <exon e_serial="5" e_score="0.919">
            <gDNA_exon_boundary e_start="4502" e_stop="4747" e_length="246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1570" stop="1971"/>
              <exon start="3388" stop="3489"/>
              <exon start="3577" stop="3675"/>
              <exon start="3765" stop="3893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1571" stop="1971"/>
              <exon start="3388" stop="3489"/>
              <exon start="3577" stop="3668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1689" stop="1971"/>
              <exon start="3388" stop="3489"/>
              <exon start="3577" stop="3675"/>
              <exon start="3765" stop="3803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3765" stop="3920"/>
              <exon start="4502" stop="4747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423064" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAAATTTCATTATTTCTTTTAACACAATGCCAATATCAACAATTGAACATCAATATTCAAGATTCAAAAATCCAAAAAACAACACTCATTCTACCCCTAATCATCAATTTTCCAACACAAATGTATCAAAAAACAAGAAAAAATTTATGTCTATGAGCTTTAGAGGGCTAGGATGTAAGGGAAAATTAAACTCACCGGACGCGTCGACACCGGAAGTTATTAGATCAGCAGCACAATGGGAGAGTAGTAGTAAGCAAATGAGGAAAAATAGAAGAAAAAAGATGACAACATTGTCAACAAGTACTAGGAATTCAACTAATGTTGTTTGTTGTGCTCCTCCTGGTATTGGTTCTGCTTATGATGTTGCTCCTAGGCCAAAAACAAGATCAAATAATAGAGAG : CACCCTCGTATCGCGAGGAGAGCAACGAATGGCGAAGCAATTTCTAGGTCTCATACGTCTAATACAAGACATCATTGCCCTCGTTCTCATCATCGTCCTCAT : ATTATGATCCTCAGACACAATTTGCAATATGCTAGAGATGTAGAAGGGGATGATCAATATGGATCTTGGAGACTAGATGTAGATGATATGTCATATGAG : CAATTGGTTGAACTAAGTGATAAGATTGGGTATGTGGGAACAGGTTTAGAAGAAGAGAAGATAGTTGAATATATAAGAAAGTTTTAGCTCTCAACAATTGACTCATATTCAATGCTAATATCTACTGAAAAAAGTTGGAAATGTACCATTTGCCAA : GAAGGATACAAAGTTGATGATGAAATTGGAAAACTAGAATGTGGACACTACCATCACATTGAGTGCATAAAGAAATGGCTTATGCATAAAAATTCATGTCCTATTTGCAAAATTGCAGCAATCCATGAAAATTAATTATTGACAAAAATTTCTTTCACTTTTCTCTATATTTTTATATTATATAGTCAAGAATATTTAATTTCAGAGGCAGAAATTAAATTTTGGTTTTAATTTTTCCTATTTTTG</gDNA_template>
            <first_frame> L  N  F  I  I  S  F  N  T  M  P  I  S  T  I  E  H  Q  Y  S  R  F  K  N  P  K  N  N  T  H  S  T  P  N  H  Q  F  S  N  T  N  V  S  K  N  K  K  K  F  M  S  M  S  F  R  G  L  G  C  K  G  K  L  N  S  P  D  A  S  T  P  E  V  I  R  S  A  A  Q  W  E  S  S  S  K  Q  M  R  K  N  R  R  K  K  M  T  T  L  S  T  S  T  R  N  S  T  N  V  V  C  C  A  P  P  G  I  G  S  A  Y  D  V  A  P  R  P  K  T  R  S  N  N  R  E  :  H  P  R  I  A  R  R  A  T  N  G  E  A  I  S  R  S  H  T  S  N  T  R  H  H  C  P  R  S  H  H  R  P  H  :  I  M  I  L  R  H  N  L  Q  Y  A  R  D  V  E  G  D  D  Q  Y  G  S  W  R  L  D  V  D  D  M  S  Y  E  :  Q  L  V  E  L  S  D  K  I  G  Y  V  G  T  G  L  E  E  E  K  I  V  E  Y  I  R  K  F  *  L  S  T  I  D  S  Y  S  M  L  I  S  T  E  K  S  W  K  C  T  I  C  Q  :  E  G  Y  K  V  D  D  E  I  G  K  L  E  C  G  H  Y  H  H  I  E  C  I  K  K  W  L  M  H  K  N  S  C  P  I  C  K  I  A  A  I  H  E  N  *  L  L  T  K  I  S  F  T  F  L  Y  I  F  I  L  Y  S  Q  E  Y  L  I  S  E  A  E  I  K  F  W  F  *  F  F  L  F  L </first_frame>
            <second_frame>  *  I  S  L  F  L  L  T  Q  C  Q  Y  Q  Q  L  N  I  N  I  Q  D  S  K  I  Q  K  T  T  L  I  L  P  L  I  I  N  F  P  T  Q  M  Y  Q  K  T  R  K  N  L  C  L  *  A  L  E  G  *  D  V  R  E  N  *  T  H  R  T  R  R  H  R  K  L  L  D  Q  Q  H  N  G  R  V  V  V  S  K  *  G  K  I  E  E  K  R  *  Q  H  C  Q  Q  V  L  G  I  Q  L  M  L  F  V  V  L  L  L  V  L  V  L  L  M  M  L  L  L  G  Q  K  Q  D  Q  I  I  E  S :   T  L  V  S  R  G  E  Q  R  M  A  K  Q  F  L  G  L  I  R  L  I  Q  D  I  I  A  L  V  L  I  I  V  L  I :   L  *  S  S  D  T  I  C  N  M  L  E  M  *  K  G  M  I  N  M  D  L  G  D  *  M  *  M  I  C  H  M  S :   N  W  L  N  *  V  I  R  L  G  M  W  E  Q  V  *  K  K  R  R  *  L  N  I  *  E  S  F  S  S  Q  Q  L  T  H  I  Q  C  *  Y  L  L  K  K  V  G  N  V  P  F  A  K :   K  D  T  K  L  M  M  K  L  E  N  *  N  V  D  T  T  I  T  L  S  A  *  R  N  G  L  C  I  K  I  H  V  L  F  A  K  L  Q  Q  S  M  K  I  N  Y  *  Q  K  F  L  S  L  F  S  I  F  L  Y  Y  I  V  K  N  I  *  F  Q  R  Q  K  L  N  F  G  F  N  F  S  Y  F   </second_frame>
            <third_frame>   K  F  H  Y  F  F  *  H  N  A  N  I  N  N  *  T  S  I  F  K  I  Q  K  S  K  K  Q  H  S  F  Y  P  *  S  S  I  F  Q  H  K  C  I  K  K  Q  E  K  I  Y  V  Y  E  L  *  R  A  R  M  *  G  K  I  K  L  T  G  R  V  D  T  G  S  Y  *  I  S  S  T  M  G  E  *  *  *  A  N  E  E  K  *  K  K  K  D  D  N  I  V  N  K  Y  *  E  F  N  *  C  C  L  L  C  S  S  W  Y  W  F  C  L  *  C  C  S  *  A  K  N  K  I  K  *  *  R   : A  P  S  Y  R  E  E  S  N  E  W  R  S  N  F  *  V  S  Y  V  *  Y  K  T  S  L  P  S  F  S  S  S  S  S   : Y  Y  D  P  Q  T  Q  F  A  I  C  *  R  C  R  R  G  *  S  I  W  I  L  E  T  R  C  R  *  Y  V  I  *   : A  I  G  *  T  K  *  *  D  W  V  C  G  N  R  F  R  R  R  E  D  S  *  I  Y  K  K  V  L  A  L  N  N  *  L  I  F  N  A  N  I  Y  *  K  K  L  E  M  Y  H  L  P   : R  R  I  Q  S  *  *  *  N  W  K  T  R  M  W  T  L  P  S  H  *  V  H  K  E  M  A  Y  A  *  K  F  M  S  Y  L  Q  N  C  S  N  P  *  K  L  I  I  D  K  N  F  F  H  F  S  L  Y  F  Y  I  I  *  S  R  I  F  N  F  R  G  R  N  *  I  L  V  L  I  F  P  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1570" stop="1971"/>
                    <exon start="3388" stop="3489"/>
                    <exon start="3577" stop="3675"/>
                    <exon start="3765" stop="3851"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNFIISFNTMPISTIEHQYSRFKNPKNNTHSTPNHQFSNTNVSKNKKKFMSMSFRGLGCKGKLNSPDASTPEVIRSAAQWESSSKQMRKNRRKKMTTLSTSTRNSTNVVCCAPPGIGSAYDVAPRPKTRSNNREHPRIARRATNGEAISRSHTSNTRHHCPRSHHRPHIMILRHNLQYARDVEGDDQYGSWRLDVDDMSYEQLVELSDKIGYVGTGLEEEKIVEYIRKF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3852" stop="3920"/>
                    <exon start="4502" stop="4636"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSTIDSYSMLISTEKSWKCTICQEGYKVDDEIGKLECGHYHHIECIKKWLMHKNSCPICKIAAIHEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15387" PGL_stop="12252"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15387" e_stop="14182"/>
            <exon e_start="13480" e_stop="12252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.999"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="15387" e_stop="14182" e_length="1206"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14181" i_stop="13481" i_length="701"/>
          </intron>
          <exon e_serial="2" e_score="0.939">
            <gDNA_exon_boundary e_start="13480" e_stop="12252" e_length="1229"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15387" stop="14694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15319" stop="14854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15312" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15292" stop="14855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15274" stop="14583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15274" stop="14583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14976" stop="14470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14770" stop="14261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14700" stop="14182"/>
              <exon start="13480" stop="13280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14700" stop="14291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14537" stop="14182"/>
              <exon start="13480" stop="12963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14238" stop="14182"/>
              <exon start="13480" stop="13142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13262" stop="12662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13219" stop="12724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13215" stop="12410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12992" stop="12252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12848" stop="12341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439435" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12805" stop="12344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12734" stop="12339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTAGCAAAACAGCTGTGAGGACTATAAAGCAAAAAACAGCTCTGGCAAAACTATCTTCTTTTTTTCTCTCTCTCCCTTTTATTCAAGTCTCTTTCCTATATGGACCCTCCACCGTTTTCCGGCGGACCAATCACGGCGGCGACGGCAGCTGTGCCACCGTCGGGAACCATCAATTATGCAGACTCGGCAGATTCTTCACCGGGATCCCGCCACACTGATTCCTGGGACGAGCAGCAGCAGCCGTCAAACACCGCCGCCACTACCACCGGCGGGAAACTGCGGTTAATGTGCAGCTATGGAGGACACATATTCCCTCGTCCTCACGACAAAACTCTTTGCTACGTCGGCGGTGACACCCGCATTTTCGTCGCCGATCGTAACAGCTCTTTGGCTGAGTTGTCTGCTCGGCTCTCTAAAACCCTTCTCGGAGGGAAACCCTTTTGCTTGAAGTATCAGCTTCAGAACGAGGACCTTGATTCACTTATCTCCGTTACCTCCGATGAGGATCTGGAAAACATGATCGATGAATACGATCGCATGAGTTCGTCTTCTAAAATTACTCGGCTTCGTTTGTTTCTGTTTCCGAGTAAAATTGATTCATGGAATCCTTCAATTGGTATGATTAGAGATAGTTCAGTGAGATCTGAAGATTGGTTTGTGAATATTTTAAATGGGGCAAATTCTACTGCTTCAACAAAGGTATTTTCTGAATCTTCTTCAGTGAATTGCCTTCTGGGTTTAGACGATGATTTAGGAAATGCGAATATTAAGGAAGTAGAAGCTCAATTAGAGGTAAAAAATGGTGGGAATAGTGTGAAAGGTACTATACATGATGTTCAATCGGTGCCGGATTCACCGATGGTTGAGACGACGTCGTCTTTTGGGTCGGGATCGTCTATGCCGTCGCTGGCGAATTTGCCGCCGATTAGGGTTCATGTTGAAGAGAGTCAAAAGGGAGGTGGAATTGAGGAGCAGTTTGCACAGATGACTGTTGGGGTTAAGCAGAAGAATGAGGAAGGGGGATTTTTGGGTTTAGCTTCACCGCCGGCGCCGGCTGTTGTAGTGACGGCGACTGTTGTTTCTGGTGTGCCGGTGGTTGAACAGATGATGCAACAACAGCAGCAACAGGTACAGCAGCCTCAGCAGTTGATGTCAAAGCCTGTTATTCCATCTGATTTGCCTTCCCCTGATTCAGTTTCAAG : TGAGGGTAGTGGTAGGCAAAGACATTACTTTTATCAAGATCCAGGGGTTCATTTCCAGTCGGGGAGCGGTAGGATTACAGGTAATTCAGCTGATCTGAATATGAGTGATTCGATGGGAAGGGTTCAGGTGAAACAGCAAGTCCAGGATGGTGGTGGTGGATATGCATTGCCAGTACAATATGAGCAGCATCCACAAATGCTCCAACCCCAACAATATGTTCATGCTGGGCAGTATATTCAACATACACCTTCGGGGCATGTCCCTATGACGTCCTACTATCCTATGTACCCTTCACAGCACCAAACACATATGCAACACCCGAATCTTGAGCACCAGTATCCCGTTTATTTTATTCCTGCTAGACCAGGCCAAGGTTACAGTTTGCCATTGCAACAAACAAATTATACCGAGCCTGCTCAAACAGTCCCTCCTACTCGTCCCCAAACACCTCCTACTATGGCCAATCCGGCATCAGCTTATAATCCGGCTAGAAATCCTCCGTCATCTAATCCTGAAATGGTTGCTGGTACATACAGAACTTCAGCTTCAGCGGCTCCACAATTAGTTCAGATCACTCCAGGCCAGCATCAGCCACAATACGTGAACTACTCTCAGATTCATCATCCTTCTCAGTCAATTCCTCCTACTTCAGCCACCACCGCCAATTATGCTTATGATTTCGCTGATCCACATGCTAAGATGTACTATAGTCAGCCTCTTGCTCCCCAATTGTCTGCGCAATATCAAACCATGACATCCGCCCCTGCAGTAAGTTTCGCAGAAACTTCCTCTCAGCTCTCCGCGGAGAACTCAAAGCAGCAAAATTAGAACTTTGCAGGCATGAAACTGTGAGTTGATCGTAAAGAAGCAATTTTGAAACATTGGTTCAGTTTGTCTTGAATATTCTGTTGAAATGTTTGAATTCTTATTGTTATTGGTTTGTCGAATGTGTAAGTTATAGGTAATAAGAAAGTCGGGGTCTTTCTTTTCTTTTCTTCTGTAAGTAATGCTGTTTATTACCCATGAAAGCATAATGGTACAAGATCTTGCTGTATAATTCCAAACTGATATGTTACATCCTCAGTTCTATGTATGGTTTTCGGAACAAATATGAAGTCGTGATTTGAGGGATTTCCAGAGTATCACTGTGTTGCCCTGCATATATTTGTTAATTTCACTCCTCTGGATCTTGTTGTTTCTTTGTTCAATAGAGAGGACGATACAACTC</gDNA_template>
            <first_frame> L  F  S  K  T  A  V  R  T  I  K  Q  K  T  A  L  A  K  L  S  S  F  F  L  S  L  P  F  I  Q  V  S  F  L  Y  G  P  S  T  V  F  R  R  T  N  H  G  G  D  G  S  C  A  T  V  G  N  H  Q  L  C  R  L  G  R  F  F  T  G  I  P  P  H  *  F  L  G  R  A  A  A  A  V  K  H  R  R  H  Y  H  R  R  E  T  A  V  N  V  Q  L  W  R  T  H  I  P  S  S  S  R  Q  N  S  L  L  R  R  R  *  H  P  H  F  R  R  R  S  *  Q  L  F  G  *  V  V  C  S  A  L  *  N  P  S  R  R  E  T  L  L  L  E  V  S  A  S  E  R  G  P  *  F  T  Y  L  R  Y  L  R  *  G  S  G  K  H  D  R  *  I  R  S  H  E  F  V  F  *  N  Y  S  A  S  F  V  S  V  S  E  *  N  *  F  M  E  S  F  N  W  Y  D  *  R  *  F  S  E  I  *  R  L  V  C  E  Y  F  K  W  G  K  F  Y  C  F  N  K  G  I  F  *  I  F  F  S  E  L  P  S  G  F  R  R  *  F  R  K  C  E  Y  *  G  S  R  S  S  I  R  G  K  K  W  W  E  *  C  E  R  Y  Y  T  *  C  S  I  G  A  G  F  T  D  G  *  D  D  V  V  F  W  V  G  I  V  Y  A  V  A  G  E  F  A  A  D  *  G  S  C  *  R  E  S  K  G  R  W  N  *  G  A  V  C  T  D  D  C  W  G  *  A  E  E  *  G  R  G  I  F  G  F  S  F  T  A  G  A  G  C  C  S  D  G  D  C  C  F  W  C  A  G  G  *  T  D  D  A  T  T  A  A  T  G  T  A  A  S  A  V  D  V  K  A  C  Y  S  I  *  F  A  F  P  *  F  S  F  K  :  *  G  *  W  *  A  K  T  L  L  L  S  R  S  R  G  S  F  P  V  G  E  R  *  D  Y  R  *  F  S  *  S  E  Y  E  *  F  D  G  K  G  S  G  E  T  A  S  P  G  W  W  W  W  I  C  I  A  S  T  I  *  A  A  S  T  N  A  P  T  P  T  I  C  S  C  W  A  V  Y  S  T  Y  T  F  G  A  C  P  Y  D  V  L  L  S  Y  V  P  F  T  A  P  N  T  Y  A  T  P  E  S  *  A  P  V  S  R  L  F  Y  S  C  *  T  R  P  R  L  Q  F  A  I  A  T  N  K  L  Y  R  A  C  S  N  S  P  S  Y  S  S  P  N  T  S  Y  Y  G  Q  S  G  I  S  L  *  S  G  *  K  S  S  V  I  *  S  *  N  G  C  W  Y  I  Q  N  F  S  F  S  G  S  T  I  S  S  D  H  S  R  P  A  S  A  T  I  R  E  L  L  S  D  S  S  S  F  S  V  N  S  S  Y  F  S  H  H  R  Q  L  C  L  *  F  R  *  S  T  C  *  D  V  L  *  S  A  S  C  S  P  I  V  C  A  I  S  N  H  D  I  R  P  C  S  K  F  R  R  N  F  L  S  A  L  R  G  E  L  K  A  A  K  L  E  L  C  R  H  E  T  V  S  *  S  *  R  S  N  F  E  T  L  V  Q  F  V  L  N  I  L  L  K  C  L  N  S  Y  C  Y  W  F  V  E  C  V  S  Y  R  *  *  E  S  R  G  L  S  F  L  F  F  C  K  *  C  C  L  L  P  M  K  A  *  W  Y  K  I  L  L  Y  N  S  K  L  I  C  Y  I  L  S  S  M  Y  G  F  R  N  K  Y  E  V  V  I  *  G  I  S  R  V  S  L  C  C  P  A  Y  I  C  *  F  H  S  S  G  S  C  C  F  F  V  Q  *  R  G  R  Y  N   </first_frame>
            <second_frame>  C  L  A  K  Q  L  *  G  L  *  S  K  K  Q  L  W  Q  N  Y  L  L  F  F  S  L  S  L  L  F  K  S  L  S  Y  M  D  P  P  P  F  S  G  G  P  I  T  A  A  T  A  A  V  P  P  S  G  T  I  N  Y  A  D  S  A  D  S  S  P  G  S  R  H  T  D  S  W  D  E  Q  Q  Q  P  S  N  T  A  A  T  T  T  G  G  K  L  R  L  M  C  S  Y  G  G  H  I  F  P  R  P  H  D  K  T  L  C  Y  V  G  G  D  T  R  I  F  V  A  D  R  N  S  S  L  A  E  L  S  A  R  L  S  K  T  L  L  G  G  K  P  F  C  L  K  Y  Q  L  Q  N  E  D  L  D  S  L  I  S  V  T  S  D  E  D  L  E  N  M  I  D  E  Y  D  R  M  S  S  S  S  K  I  T  R  L  R  L  F  L  F  P  S  K  I  D  S  W  N  P  S  I  G  M  I  R  D  S  S  V  R  S  E  D  W  F  V  N  I  L  N  G  A  N  S  T  A  S  T  K  V  F  S  E  S  S  S  V  N  C  L  L  G  L  D  D  D  L  G  N  A  N  I  K  E  V  E  A  Q  L  E  V  K  N  G  G  N  S  V  K  G  T  I  H  D  V  Q  S  V  P  D  S  P  M  V  E  T  T  S  S  F  G  S  G  S  S  M  P  S  L  A  N  L  P  P  I  R  V  H  V  E  E  S  Q  K  G  G  G  I  E  E  Q  F  A  Q  M  T  V  G  V  K  Q  K  N  E  E  G  G  F  L  G  L  A  S  P  P  A  P  A  V  V  V  T  A  T  V  V  S  G  V  P  V  V  E  Q  M  M  Q  Q  Q  Q  Q  Q  V  Q  Q  P  Q  Q  L  M  S  K  P  V  I  P  S  D  L  P  S  P  D  S  V  S  S :   E  G  S  G  R  Q  R  H  Y  F  Y  Q  D  P  G  V  H  F  Q  S  G  S  G  R  I  T  G  N  S  A  D  L  N  M  S  D  S  M  G  R  V  Q  V  K  Q  Q  V  Q  D  G  G  G  G  Y  A  L  P  V  Q  Y  E  Q  H  P  Q  M  L  Q  P  Q  Q  Y  V  H  A  G  Q  Y  I  Q  H  T  P  S  G  H  V  P  M  T  S  Y  Y  P  M  Y  P  S  Q  H  Q  T  H  M  Q  H  P  N  L  E  H  Q  Y  P  V  Y  F  I  P  A  R  P  G  Q  G  Y  S  L  P  L  Q  Q  T  N  Y  T  E  P  A  Q  T  V  P  P  T  R  P  Q  T  P  P  T  M  A  N  P  A  S  A  Y  N  P  A  R  N  P  P  S  S  N  P  E  M  V  A  G  T  Y  R  T  S  A  S  A  A  P  Q  L  V  Q  I  T  P  G  Q  H  Q  P  Q  Y  V  N  Y  S  Q  I  H  H  P  S  Q  S  I  P  P  T  S  A  T  T  A  N  Y  A  Y  D  F  A  D  P  H  A  K  M  Y  Y  S  Q  P  L  A  P  Q  L  S  A  Q  Y  Q  T  M  T  S  A  P  A  V  S  F  A  E  T  S  S  Q  L  S  A  E  N  S  K  Q  Q  N  *  N  F  A  G  M  K  L  *  V  D  R  K  E  A  I  L  K  H  W  F  S  L  S  *  I  F  C  *  N  V  *  I  L  I  V  I  G  L  S  N  V  *  V  I  G  N  K  K  V  G  V  F  L  F  F  S  S  V  S  N  A  V  Y  Y  P  *  K  H  N  G  T  R  S  C  C  I  I  P  N  *  Y  V  T  S  S  V  L  C  M  V  F  G  T  N  M  K  S  *  F  E  G  F  P  E  Y  H  C  V  A  L  H  I  F  V  N  F  T  P  L  D  L  V  V  S  L  F  N  R  E  D  D  T  T  </second_frame>
            <third_frame>   V  *  Q  N  S  C  E  D  Y  K  A  K  N  S  S  G  K  T  I  F  F  F  S  L  S  P  F  Y  S  S  L  F  P  I  W  T  L  H  R  F  P  A  D  Q  S  R  R  R  R  Q  L  C  H  R  R  E  P  S  I  M  Q  T  R  Q  I  L  H  R  D  P  A  T  L  I  P  G  T  S  S  S  S  R  Q  T  P  P  P  L  P  P  A  G  N  C  G  *  C  A  A  M  E  D  T  Y  S  L  V  L  T  T  K  L  F  A  T  S  A  V  T  P  A  F  S  S  P  I  V  T  A  L  W  L  S  C  L  L  G  S  L  K  P  F  S  E  G  N  P  F  A  *  S  I  S  F  R  T  R  T  L  I  H  L  S  P  L  P  P  M  R  I  W  K  T  *  S  M  N  T  I  A  *  V  R  L  L  K  L  L  G  F  V  C  F  C  F  R  V  K  L  I  H  G  I  L  Q  L  V  *  L  E  I  V  Q  *  D  L  K  I  G  L  *  I  F  *  M  G  Q  I  L  L  L  Q  Q  R  Y  F  L  N  L  L  Q  *  I  A  F  W  V  *  T  M  I  *  E  M  R  I  L  R  K  *  K  L  N  *  R  *  K  M  V  G  I  V  *  K  V  L  Y  M  M  F  N  R  C  R  I  H  R  W  L  R  R  R  R  L  L  G  R  D  R  L  C  R  R  W  R  I  C  R  R  L  G  F  M  L  K  R  V  K  R  E  V  E  L  R  S  S  L  H  R  *  L  L  G  L  S  R  R  M  R  K  G  D  F  W  V  *  L  H  R  R  R  R  L  L  *  *  R  R  L  L  F  L  V  C  R  W  L  N  R  *  C  N  N  S  S  N  R  Y  S  S  L  S  S  *  C  Q  S  L  L  F  H  L  I  C  L  P  L  I  Q  F  Q   : V  R  V  V  V  G  K  D  I  T  F  I  K  I  Q  G  F  I  S  S  R  G  A  V  G  L  Q  V  I  Q  L  I  *  I  *  V  I  R  W  E  G  F  R  *  N  S  K  S  R  M  V  V  V  D  M  H  C  Q  Y  N  M  S  S  I  H  K  C  S  N  P  N  N  M  F  M  L  G  S  I  F  N  I  H  L  R  G  M  S  L  *  R  P  T  I  L  C  T  L  H  S  T  K  H  I  C  N  T  R  I  L  S  T  S  I  P  F  I  L  F  L  L  D  Q  A  K  V  T  V  C  H  C  N  K  Q  I  I  P  S  L  L  K  Q  S  L  L  L  V  P  K  H  L  L  L  W  P  I  R  H  Q  L  I  I  R  L  E  I  L  R  H  L  I  L  K  W  L  L  V  H  T  E  L  Q  L  Q  R  L  H  N  *  F  R  S  L  Q  A  S  I  S  H  N  T  *  T  T  L  R  F  I  I  L  L  S  Q  F  L  L  L  Q  P  P  P  P  I  M  L  M  I  S  L  I  H  M  L  R  C  T  I  V  S  L  L  L  P  N  C  L  R  N  I  K  P  *  H  P  P  L  Q  *  V  S  Q  K  L  P  L  S  S  P  R  R  T  Q  S  S  K  I  R  T  L  Q  A  *  N  C  E  L  I  V  K  K  Q  F  *  N  I  G  S  V  C  L  E  Y  S  V  E  M  F  E  F  L  L  L  L  V  C  R  M  C  K  L  *  V  I  R  K  S  G  S  F  F  S  F  L  L  *  V  M  L  F  I  T  H  E  S  I  M  V  Q  D  L  A  V  *  F  Q  T  D  M  L  H  P  Q  F  Y  V  W  F  S  E  Q  I  *  S  R  D  L  R  D  F  Q  S  I  T  V  L  P  C  I  Y  L  L  I  S  L  L  W  I  L  L  F  L  C  S  I  E  R  T  I  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15356" stop="14182"/>
                    <exon start="13480" stop="12652"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2001</number_coding_nucleotides>
                  <number_encoded_amino_acids>667</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKKQLWQNYLLFFSLSLLFKSLSYMDPPPFSGGPITAATAAVPPSGTINYADSADSSPGSRHTDSWDEQQQPSNTAATTTGGKLRLMCSYGGHIFPRPHDKTLCYVGGDTRIFVADRNSSLAELSARLSKTLLGGKPFCLKYQLQNEDLDSLISVTSDEDLENMIDEYDRMSSSSKITRLRLFLFPSKIDSWNPSIGMIRDSSVRSEDWFVNILNGANSTASTKVFSESSSVNCLLGLDDDLGNANIKEVEAQLEVKNGGNSVKGTIHDVQSVPDSPMVETTSSFGSGSSMPSLANLPPIRVHVEESQKGGGIEEQFAQMTVGVKQKNEEGGFLGLASPPAPAVVVTATVVSGVPVVEQMMQQQQQQVQQPQQLMSKPVIPSDLPSPDSVSSEGSGRQRHYFYQDPGVHFQSGSGRITGNSADLNMSDSMGRVQVKQQVQDGGGGYALPVQYEQHPQMLQPQQYVHAGQYIQHTPSGHVPMTSYYPMYPSQHQTHMQHPNLEHQYPVYFIPARPGQGYSLPLQQTNYTEPAQTVPPTRPQTPPTMANPASAYNPARNPPSSNPEMVAGTYRTSASAAPQLVQITPGQHQPQYVNYSQIHHPSQSIPPTSATTANYAYDFADPHAKMYYSQPLAPQLSAQYQTMTSAPAVSFAETSSQLSAENSKQQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12365" PGL_stop="13076"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12365" e_stop="13076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="12365" e_stop="13076" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12365" stop="12896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12374" stop="13076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12394" stop="12741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306604" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATATTTGTTCCGAAAACCATACATAGAACTGAGGATGTAACATATCAGTTTGGAATTATACAGCAAGATCTTGTACCATTATGCTTTCATGGGTAATAAACAGCATTACTTACAGAAGAAAAGAAAAGAAAGACCCCGACTTTCTTATTACCTATAACTTACACATTCGACAAACCAATAACAATAAGAATTCAAACATTTCAACAGAATATTCAAGACAAACTGAACCAATGTTTCAAAATTGCTTCTTTACGATCAACTCACAGTTTCATGCCTGCAAAGTTCTAATTTTGCTGCTTTGAGTTCTCCGCGGAGAGCTGAGAGGAAGTTTCTGCGAAACTTACTGCAGGGGCGGATGTCATGGTTTGATATTGCGCAGACAATTGGGGAGCAAGAGGCTGACTATAGTACATCTTAGCATGTGGATCAGCGAAATCATAAGCATAATTGGCGGTGGTGGCTGAAGTAGGAGGAATTGACTGAGAAGGATGATGAATCTGAGAGTAGTTCACGTATTGTGGCTGATGCTGGCCTGGAGTGATCTGAACTAATTGTGGAGCCGCTGAAGCTGAAGTTCTGTATGTACCAGCAACCATTTCAGGATTAGATGACGGAGGATTTCTAGCCGGATTATAAGCTGATGCCGGATTGGCCATAGTAGGAGGTGTTTGGGGACGAGTAGGAGGGACTGTTTGAGCAGGCTCGGTAT</gDNA_template>
            <first_frame> F  I  F  V  P  K  T  I  H  R  T  E  D  V  T  Y  Q  F  G  I  I  Q  Q  D  L  V  P  L  C  F  H  G  *  *  T  A  L  L  T  E  E  K  K  R  K  T  P  T  F  L  L  P  I  T  Y  T  F  D  K  P  I  T  I  R  I  Q  T  F  Q  Q  N  I  Q  D  K  L  N  Q  C  F  K  I  A  S  L  R  S  T  H  S  F  M  P  A  K  F  *  F  C  C  F  E  F  S  A  E  S  *  E  E  V  S  A  K  L  T  A  G  A  D  V  M  V  *  Y  C  A  D  N  W  G  A  R  G  *  L  *  Y  I  L  A  C  G  S  A  K  S  *  A  *  L  A  V  V  A  E  V  G  G  I  D  *  E  G  *  *  I  *  E  *  F  T  Y  C  G  *  C  W  P  G  V  I  *  T  N  C  G  A  A  E  A  E  V  L  Y  V  P  A  T  I  S  G  L  D  D  G  G  F  L  A  G  L  *  A  D  A  G  L  A  I  V  G  G  V  W  G  R  V  G  G  T  V  *  A  G  S  V  </first_frame>
            <second_frame>  S  Y  L  F  R  K  P  Y  I  E  L  R  M  *  H  I  S  L  E  L  Y  S  K  I  L  Y  H  Y  A  F  M  G  N  K  Q  H  Y  L  Q  K  K  R  K  E  R  P  R  L  S  Y  Y  L  *  L  T  H  S  T  N  Q  *  Q  *  E  F  K  H  F  N  R  I  F  K  T  N  *  T  N  V  S  K  L  L  L  Y  D  Q  L  T  V  S  C  L  Q  S  S  N  F  A  A  L  S  S  P  R  R  A  E  R  K  F  L  R  N  L  L  Q  G  R  M  S  W  F  D  I  A  Q  T  I  G  E  Q  E  A  D  Y  S  T  S  *  H  V  D  Q  R  N  H  K  H  N  W  R  W  W  L  K  *  E  E  L  T  E  K  D  D  E  S  E  S  S  S  R  I  V  A  D  A  G  L  E  *  S  E  L  I  V  E  P  L  K  L  K  F  C  M  Y  Q  Q  P  F  Q  D  *  M  T  E  D  F  *  P  D  Y  K  L  M  P  D  W  P  *  *  E  V  F  G  D  E  *  E  G  L  F  E  Q  A  R  Y </second_frame>
            <third_frame>   H  I  C  S  E  N  H  T  *  N  *  G  C  N  I  S  V  W  N  Y  T  A  R  S  C  T  I  M  L  S  W  V  I  N  S  I  T  Y  R  R  K  E  K  K  D  P  D  F  L  I  T  Y  N  L  H  I  R  Q  T  N  N  N  K  N  S  N  I  S  T  E  Y  S  R  Q  T  E  P  M  F  Q  N  C  F  F  T  I  N  S  Q  F  H  A  C  K  V  L  I  L  L  L  *  V  L  R  G  E  L  R  G  S  F  C  E  T  Y  C  R  G  G  C  H  G  L  I  L  R  R  Q  L  G  S  K  R  L  T  I  V  H  L  S  M  W  I  S  E  I  I  S  I  I  G  G  G  G  *  S  R  R  N  *  L  R  R  M  M  N  L  R  V  V  H  V  L  W  L  M  L  A  W  S  D  L  N  *  L  W  S  R  *  S  *  S  S  V  C  T  S  N  H  F  R  I  R  *  R  R  I  S  S  R  I  I  S  *  C  R  I  G  H  S  R  R  C  L  G  T  S  R  R  D  C  L  S  R  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12400" stop="12669"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCNISVWNYTARSCTIMLSWVINSITYRRKEKKDPDFLITYNLHIRQTNNNKNSNISTEYSRQTEPMFQNCFFTINSQFHACKVLILLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="18763" PGL_stop="17274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18763" e_stop="18749"/>
            <exon e_start="18634" e_stop="18544"/>
            <exon e_start="18460" e_stop="18272"/>
            <exon e_start="18181" e_stop="18122"/>
            <exon e_start="17621" e_stop="17274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.837" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.700" e_score="1.000"/>
          <exon-intron don_prob="0.773" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18763" e_stop="18749" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.837" acc_prob="0.990">
            <gDNA_intron_boundary i_start="18748" i_stop="18635" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18634" e_stop="18544" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.700">
            <gDNA_intron_boundary i_start="18543" i_stop="18461" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18460" e_stop="18272" e_length="189"/>
          </exon>
          <intron i_serial="3" don_prob="0.773" acc_prob="0.966">
            <gDNA_intron_boundary i_start="18271" i_stop="18182" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18181" e_stop="18122" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.986">
            <gDNA_intron_boundary i_start="18121" i_stop="17622" i_length="500"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17621" e_stop="17274" e_length="348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18763" stop="18749"/>
              <exon start="18634" stop="18544"/>
              <exon start="18460" stop="18272"/>
              <exon start="18181" stop="18122"/>
              <exon start="17621" stop="17463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18763" stop="18749"/>
              <exon start="18634" stop="18544"/>
              <exon start="18460" stop="18391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18762" stop="18749"/>
              <exon start="18634" stop="18544"/>
              <exon start="18460" stop="18272"/>
              <exon start="18181" stop="18122"/>
              <exon start="17621" stop="17274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18762" stop="18749"/>
              <exon start="18634" stop="18544"/>
              <exon start="18460" stop="18272"/>
              <exon start="18181" stop="18122"/>
              <exon start="17621" stop="17274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18762" stop="18749"/>
              <exon start="18634" stop="18544"/>
              <exon start="18460" stop="18272"/>
              <exon start="18181" stop="18122"/>
              <exon start="17621" stop="17588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18370" stop="18272"/>
              <exon start="18181" stop="18122"/>
              <exon start="17621" stop="17308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302219" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17513" stop="17346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGATGGTAAAGAT : GAGTATGATCGGTGGGGAAACGTGAAATGTCATGGTAAAGAAAGTGATATTAAGGAAGGACATAAGAGTTTCCCAAGCGGACATACAAGTG : CATCATTTGCTGGTCTCGGGTTTCTATCATTGTATTTGGCTGGGAAGATTAAAGCATTTGATCGACGAGGGCATATAGCTAAACTATGCATAGTTTTTCTTCCTCTTCTAATGGCATCTCTTGTCGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTATTTGCTGGAGGACTGATAG : GTCTTTTCGTTGCAGCGTTCTGTTATCTGCAGTTCTTCCCAGCTCCATACCATACTGAAG : GATGGGGACCATATGCATATTTCCGGGCAGTGGAGGAGGTTCGTGTTAGCAGACAACACGCCACCCCTACCAACGGAGGAGTAGAGGTAGAACATTCCGAGGTACAACTGAATCAGCAATCTGGTACAACTACCATTGCTTTTGAGGATGTGGAGAATGGCAGAATATGAGACATGTATAAACACTGTATACTTATGCTTATATCTATAGCAAAGTTCTATTAGGTATTTGGAAATATGTAAAATGAACAAGCAAAGAAATTAAAATTTAGTAAGAATCGATCGAATCGAGTTATGATCTGCTTTTTAGCTCAAATAAACTTTTATGATTGACCGTCTCGTTTATTTA</gDNA_template>
            <first_frame> P  D  G  K  D  :  E  Y  D  R  W  G  N  V  K  C  H  G  K  E  S  D  I  K  E  G  H  K  S  F  P  S  G  H  T  S   : A  S  F  A  G  L  G  F  L  S  L  Y  L  A  G  K  I  K  A  F  D  R  R  G  H  I  A  K  L  C  I  V  F  L  P  L  L  M  A  S  L  V  G  V  S  R  V  D  D  Y  W  H  H  W  Q  D  V  F  A  G  G  L  I   : G  L  F  V  A  A  F  C  Y  L  Q  F  F  P  A  P  Y  H  T  E   : G  W  G  P  Y  A  Y  F  R  A  V  E  E  V  R  V  S  R  Q  H  A  T  P  T  N  G  G  V  E  V  E  H  S  E  V  Q  L  N  Q  Q  S  G  T  T  T  I  A  F  E  D  V  E  N  G  R  I  *  D  M  Y  K  H  C  I  L  M  L  I  S  I  A  K  F  Y  *  V  F  G  N  M  *  N  E  Q  A  K  K  L  K  F  S  K  N  R  S  N  R  V  M  I  C  F  L  A  Q  I  N  F  Y  D  *  P  S  R  L  F  </first_frame>
            <second_frame>  L  M  V  K  M :   S  M  I  G  G  E  T  *  N  V  M  V  K  K  V  I  L  R  K  D  I  R  V  S  Q  A  D  I  Q  V  :  H  H  L  L  V  S  G  F  Y  H  C  I  W  L  G  R  L  K  H  L  I  D  E  G  I  *  L  N  Y  A  *  F  F  F  L  F  *  W  H  L  L  S  G  S  H  V  W  M  T  T  G  I  I  G  K  T  Y  L  L  E  D  *  *  :  V  F  S  L  Q  R  S  V  I  C  S  S  S  Q  L  H  T  I  L  K  :  D  G  D  H  M  H  I  S  G  Q  W  R  R  F  V  L  A  D  N  T  P  P  L  P  T  E  E  *  R  *  N  I  P  R  Y  N  *  I  S  N  L  V  Q  L  P  L  L  L  R  M  W  R  M  A  E  Y  E  T  C  I  N  T  V  Y  L  C  L  Y  L  *  Q  S  S  I  R  Y  L  E  I  C  K  M  N  K  Q  R  N  *  N  L  V  R  I  D  R  I  E  L  *  S  A  F  *  L  K  *  T  F  M  I  D  R  L  V  Y  L </second_frame>
            <third_frame>   *  W  *  R   : *  V  *  S  V  G  K  R  E  M  S  W  *  R  K  *  Y  *  G  R  T  *  E  F  P  K  R  T  Y  K  C :   I  I  C  W  S  R  V  S  I  I  V  F  G  W  E  D  *  S  I  *  S  T  R  A  Y  S  *  T  M  H  S  F  S  S  S  S  N  G  I  S  C  R  G  L  T  C  G  *  L  L  A  S  L  A  R  R  I  C  W  R  T  D  R :   S  F  R  C  S  V  L  L  S  A  V  L  P  S  S  I  P  Y  *  R :   M  G  T  I  C  I  F  P  G  S  G  G  G  S  C  *  Q  T  T  R  H  P  Y  Q  R  R  S  R  G  R  T  F  R  G  T  T  E  S  A  I  W  Y  N  Y  H  C  F  *  G  C  G  E  W  Q  N  M  R  H  V  *  T  L  Y  T  Y  A  Y  I  Y  S  K  V  L  L  G  I  W  K  Y  V  K  *  T  S  K  E  I  K  I  *  *  E  S  I  E  S  S  Y  D  L  L  F  S  S  N  K  L  L  *  L  T  V  S  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18763" stop="18749"/>
                    <exon start="18634" stop="18544"/>
                    <exon start="18460" stop="18272"/>
                    <exon start="18181" stop="18122"/>
                    <exon start="17621" stop="17452"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PDGKDEYDRWGNVKCHGKESDIKEGHKSFPSGHTSASFAGLGFLSLYLAGKIKAFDRRGHIAKLCIVFLPLLMASLVGVSRVDDYWHHWQDVFAGGLIGLFVAAFCYLQFFPAPYHTEGWGPYAYFRAVEEVRVSRQHATPTNGGVEVEHSEVQLNQQSGTTTIAFEDVENGRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="20522" PGL_stop="18796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20329" e_stop="20224"/>
            <exon e_start="19386" e_stop="19162"/>
            <exon e_start="19034" e_stop="18947"/>
            <exon e_start="18858" e_stop="18796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.970" e_score="0.864"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-intron don_prob="0.912" acc_prob="0.883" e_score="0.955"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.864">
            <gDNA_exon_boundary e_start="20329" e_stop="20224" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.970">
            <gDNA_intron_boundary i_start="20223" i_stop="19387" i_length="837"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="19386" e_stop="19162" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19161" i_stop="19035" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="0.955">
            <gDNA_exon_boundary e_start="19034" e_stop="18947" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.912" acc_prob="0.883">
            <gDNA_intron_boundary i_start="18946" i_stop="18859" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.937">
            <gDNA_exon_boundary e_start="18858" e_stop="18796" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20329" stop="20224"/>
              <exon start="19386" stop="19162"/>
              <exon start="19034" stop="18947"/>
              <exon start="18858" stop="18796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20326" stop="20224"/>
              <exon start="19386" stop="19162"/>
              <exon start="19034" stop="18947"/>
              <exon start="18858" stop="18831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432138" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGTGTTTTTTTTTTTTGGATTTTAGGTTCTCAAGATTCTCTGTAATTGAAATATTAGCTCTGCTTAAATGAGCTGGAAAAATAAGATTAGAGCTGTATTTCAG : GGTAATACACATGAGATTGAGCGCGGATGTGGACATACTATTAAGTCTCATGGTTTATCCGTTGCAAGAATTCACATCCACGACTGGCTTATATTGCTACTGCTTGTTGTTATAGCTATAGTTCTTAATGTCATCGGTCCATTTCATCGGTTTGTTGGGAAGGATATGATGACTGATCTGAAATATCCGATGAAAGATAATACAGTTCCAGCGTGGTCTATTCCT : CTATATGCAGTGTTATTGCCTATTATAATCTTCGTTTTCATCTATCTTCGGAGGAAGGACGTTTATGATCTGCACCACAGCATTTTAG : GTATTTTATTTGCCATACTAATTACAGCTGTAGTTACTGAAGCCATCAAGAATGGAGTAGGAC</gDNA_template>
            <first_frame> F  G  V  F  F  F  W  I  L  G  S  Q  D  S  L  *  L  K  Y  *  L  C  L  N  E  L  E  K  *  D  *  S  C  I  S   : G  *  Y  T  *  D  *  A  R  M  W  T  Y  Y  *  V  S  W  F  I  R  C  K  N  S  H  P  R  L  A  Y  I  A  T  A  C  C  Y  S  Y  S  S  *  C  H  R  S  I  S  S  V  C  W  E  G  Y  D  D  *  S  E  I  S  D  E  R  *  Y  S  S  S  V  V  Y  S   : S  I  C  S  V  I  A  Y  Y  N  L  R  F  H  L  S  S  E  E  G  R  L  *  S  A  P  Q  H  F  R :   Y  F  I  C  H  T  N  Y  S  C  S  Y  *  S  H  Q  E  W  S  R   </first_frame>
            <second_frame>  L  V  F  F  F  F  G  F  *  V  L  K  I  L  C  N  *  N  I  S  S  A  *  M  S  W  K  N  K  I  R  A  V  F  Q  :  G  N  T  H  E  I  E  R  G  C  G  H  T  I  K  S  H  G  L  S  V  A  R  I  H  I  H  D  W  L  I  L  L  L  L  V  V  I  A  I  V  L  N  V  I  G  P  F  H  R  F  V  G  K  D  M  M  T  D  L  K  Y  P  M  K  D  N  T  V  P  A  W  S  I  P  :  L  Y  A  V  L  L  P  I  I  I  F  V  F  I  Y  L  R  R  K  D  V  Y  D  L  H  H  S  I  L   : G  I  L  F  A  I  L  I  T  A  V  V  T  E  A  I  K  N  G  V  G  </second_frame>
            <third_frame>   W  C  F  F  F  L  D  F  R  F  S  R  F  S  V  I  E  I  L  A  L  L  K  *  A  G  K  I  R  L  E  L  Y  F  R :   V  I  H  M  R  L  S  A  D  V  D  I  L  L  S  L  M  V  Y  P  L  Q  E  F  T  S  T  T  G  L  Y  C  Y  C  L  L  L  *  L  *  F  L  M  S  S  V  H  F  I  G  L  L  G  R  I  *  *  L  I  *  N  I  R  *  K  I  I  Q  F  Q  R  G  L  F  L :   Y  M  Q  C  Y  C  L  L  *  S  S  F  S  S  I  F  G  G  R  T  F  M  I  C  T  T  A  F  *  :  V  F  Y  L  P  Y  *  L  Q  L  *  L  L  K  P  S  R  M  E  *  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20259" stop="20224"/>
                    <exon start="19386" stop="19162"/>
                    <exon start="19034" stop="18947"/>
                    <exon start="18858" stop="18797"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSWKNKIRAVFQGNTHEIERGCGHTIKSHGLSVARIHIHDWLILLLLVVIAIVLNVIGPFHRFVGKDMMTDLKYPMKDNTVPAWSIPLYAVLLPIIIFVFIYLRRKDVYDLHHSILGILFAILITAVVTEAIKNGVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20522" e_stop="20490"/>
            <exon e_start="20301" e_stop="20224"/>
            <exon e_start="19386" e_stop="19162"/>
            <exon e_start="19034" e_stop="18947"/>
            <exon e_start="18877" e_stop="18834"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.059" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20522" e_stop="20490" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.988">
            <gDNA_intron_boundary i_start="20489" i_stop="20302" i_length="188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20301" e_stop="20224" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.970">
            <gDNA_intron_boundary i_start="20223" i_stop="19387" i_length="837"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19386" e_stop="19162" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19161" i_stop="19035" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="19034" e_stop="18947" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.912" acc_prob="0.059">
            <gDNA_intron_boundary i_start="18946" i_stop="18878" i_length="69"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18877" e_stop="18834" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20522" stop="20490"/>
              <exon start="20301" stop="20224"/>
              <exon start="19386" stop="19162"/>
              <exon start="19034" stop="18987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20285" stop="20224"/>
              <exon start="19386" stop="19162"/>
              <exon start="19034" stop="18947"/>
              <exon start="18877" stop="18834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGCCATTGCTAAAGTTTGAAACTTCAAAAGG : GTTCTCAAGATTCTCTGTAATTGAAATATTAGCTCTGCTTAAATGAGCTGGAAAAATAAGATTAGAGCTGTATTTCAG : GGTAATACACATGAGATTGAGCGCGGATGTGGACATACTATTAAGTCTCATGGTTTATCCGTTGCAAGAATTCACATCCACGACTGGCTTATATTGCTACTGCTTGTTGTTATAGCTATAGTTCTTAATGTCATCGGTCCATTTCATCGGTTTGTTGGGAAGGATATGATGACTGATCTGAAATATCCGATGAAAGATAATACAGTTCCAGCGTGGTCTATTCCT : CTATATGCAGTGTTATTGCCTATTATAATCTTCGTTTTCATCTATCTTCGGAGGAAGGACGTTTATGATCTGCACCACAGCATTTTAG : GCTTGTCCGAAAATTGCAGGTATTTTATTTGCCATACTAATTAC</gDNA_template>
            <first_frame> S  A  I  A  K  V  *  N  F  K  R  :  V  L  K  I  L  C  N  *  N  I  S  S  A  *  M  S  W  K  N  K  I  R  A  V  F  Q  :  G  N  T  H  E  I  E  R  G  C  G  H  T  I  K  S  H  G  L  S  V  A  R  I  H  I  H  D  W  L  I  L  L  L  L  V  V  I  A  I  V  L  N  V  I  G  P  F  H  R  F  V  G  K  D  M  M  T  D  L  K  Y  P  M  K  D  N  T  V  P  A  W  S  I  P  :  L  Y  A  V  L  L  P  I  I  I  F  V  F  I  Y  L  R  R  K  D  V  Y  D  L  H  H  S  I  L   : G  L  S  E  N  C  R  Y  F  I  C  H  T  N  Y </first_frame>
            <second_frame>  L  P  L  L  K  F  E  T  S  K  G :   F  S  R  F  S  V  I  E  I  L  A  L  L  K  *  A  G  K  I  R  L  E  L  Y  F  R :   V  I  H  M  R  L  S  A  D  V  D  I  L  L  S  L  M  V  Y  P  L  Q  E  F  T  S  T  T  G  L  Y  C  Y  C  L  L  L  *  L  *  F  L  M  S  S  V  H  F  I  G  L  L  G  R  I  *  *  L  I  *  N  I  R  *  K  I  I  Q  F  Q  R  G  L  F  L :   Y  M  Q  C  Y  C  L  L  *  S  S  F  S  S  I  F  G  G  R  T  F  M  I  C  T  T  A  F  *  :  A  C  P  K  I  A  G  I  L  F  A  I  L  I   </second_frame>
            <third_frame>   C  H  C  *  S  L  K  L  Q  K   : G  S  Q  D  S  L  *  L  K  Y  *  L  C  L  N  E  L  E  K  *  D  *  S  C  I  S   : G  *  Y  T  *  D  *  A  R  M  W  T  Y  Y  *  V  S  W  F  I  R  C  K  N  S  H  P  R  L  A  Y  I  A  T  A  C  C  Y  S  Y  S  S  *  C  H  R  S  I  S  S  V  C  W  E  G  Y  D  D  *  S  E  I  S  D  E  R  *  Y  S  S  S  V  V  Y  S   : S  I  C  S  V  I  A  Y  Y  N  L  R  F  H  L  S  S  E  E  G  R  L  *  S  A  P  Q  H  F  R :   L  V  R  K  L  Q  V  F  Y  L  P  Y  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20259" stop="20224"/>
                    <exon start="19386" stop="19162"/>
                    <exon start="19034" stop="18947"/>
                    <exon start="18877" stop="18834"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSWKNKIRAVFQGNTHEIERGCGHTIKSHGLSVARIHIHDWLILLLLVVIAIVLNVIGPFHRFVGKDMMTDLKYPMKDNTVPAWSIPLYAVLLPIIIFVFIYLRRKDVYDLHHSILGLSENCRYFICHTNY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="24397" PGL_stop="30203"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25982" e_stop="26027"/>
            <exon e_start="26201" e_stop="26274"/>
            <exon e_start="27221" e_stop="27445"/>
            <exon e_start="27676" e_stop="27763"/>
            <exon e_start="27931" e_stop="28040"/>
            <exon e_start="28270" e_stop="28360"/>
            <exon e_start="28453" e_stop="28641"/>
            <exon e_start="28726" e_stop="28785"/>
            <exon e_start="29180" e_stop="29597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.728" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.845" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25982" e_stop="26027" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.728" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26028" i_stop="26200" i_length="173"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26201" e_stop="26274" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.987">
            <gDNA_intron_boundary i_start="26275" i_stop="27220" i_length="946"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27221" e_stop="27445" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.845" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27446" i_stop="27675" i_length="230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27676" e_stop="27763" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.873" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27764" i_stop="27930" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27931" e_stop="28040" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.910" acc_prob="0.994">
            <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28270" e_stop="28360" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.952">
            <gDNA_intron_boundary i_start="28361" i_stop="28452" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28453" e_stop="28641" e_length="189"/>
          </exon>
          <intron i_serial="7" don_prob="0.863" acc_prob="0.916">
            <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28726" e_stop="28785" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394"/>
          </intron>
          <exon e_serial="9" e_score="0.962">
            <gDNA_exon_boundary e_start="29180" e_stop="29597" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25982" stop="26027"/>
              <exon start="26201" stop="26274"/>
              <exon start="27221" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25982" stop="26027"/>
              <exon start="26201" stop="26274"/>
              <exon start="27221" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26205" stop="26274"/>
              <exon start="27221" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27222" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28018" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28027" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28030" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28507" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411655" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGAAGGATTCTTTGCTGATAAATCATGTTTCCTTTCTTAATCTCG : ATCCCAAGAGATTGGACTGAAGTATCAACAGTGCTTAAATGGGTTGGAAAGACAAGATTAGAACTGTGTTTCAG : GGTAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTACTACTGCTTGTAGTAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCC : CTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCGGAGGAGGGACATCTATGATCTGCACCACAGCATTCTAG : GCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGAT : GAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACATAAGAGCTTCCCAAGCGGGCATACCTCAT : GGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAG : GCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAG : GATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTTTTTTTTGTGTGTGTGTAATTTGTTGCATAATTAGTTTATTGGTTGATAATTTTGTCATTATTTCTTTCATTCCTTGAGCTAAAGATCATTTTGTTA</gDNA_template>
            <first_frame> *  K  D  S  L  L  I  N  H  V  S  F  L  N  L   : D  P  K  R  L  D  *  S  I  N  S  A  *  M  G  W  K  D  K  I  R  T  V  F  Q  :  G  N  T  N  E  I  E  L  G  C  G  H  T  I  K  S  H  G  S  S  V  A  R  I  H  M  H  D  W  L  I  L  L  L  L  V  V  I  E  V  V  L  Y  V  I  G  P  F  H  R  Y  V  G  K  D  M  M  T  D  L  K  Y  P  M  K  D  N  T  V  P  V  W  S  V  P  :  L  Y  A  V  V  L  P  I  I  I  F  I  F  V  Y  L  R  R  R  D  I  Y  D  L  H  H  S  I  L   : G  L  L  F  A  V  L  I  T  A  V  I  T  D  A  I  K  N  G  V  G  R  P  R  P  D  F  F  W  R  C  F  P  D  G  K  D  :  E  Y  D  Q  W  G  D  V  K  C  H  G  K  A  S  D  I  K  E  G  H  K  S  F  P  S  G  H  T  S   : W  S  F  A  G  L  G  F  L  S  L  Y  L  A  G  K  I  K  A  F  D  R  R  G  H  V  A  K  L  C  I  V  L  L  P  L  L  M  A  S  L  V  G  V  S  R  V  D  D  Y  W  H  H  W  Q  D  V  F  T  G  G  M  I   : G  L  F  V  A  T  F  C  Y  L  Q  F  F  P  A  P  Y  H  T  E   : G  W  G  P  Y  A  Y  F  R  A  V  E  E  V  R  S  S  R  P  H  V  H  P  T  N  G  G  L  E  T  E  H  P  E  V  Q  L  N  Q  R  T  G  T  T  P  N  P  F  E  D  V  E  Y  G  R  M  *  D  I  G  N  C  L  Y  F  C  S  K  Y  F  N  W  H  S  L  L  F  S  C  E  Y  L  C  L  F  L  L  S  I  L  A  I  G  N  Y  L  I  T  E  I  V  L  I  S  G  K  F  F  F  L  C  V  C  N  L  L  H  N  *  F  I  G  *  *  F  C  H  Y  F  F  H  S  L  S  *  R  S  F  C   </first_frame>
            <second_frame>  R  R  I  L  C  *  *  I  M  F  P  F  L  I  S  :  I  P  R  D  W  T  E  V  S  T  V  L  K  W  V  G  K  T  R  L  E  L  C  F  R :   V  I  Q  M  R  L  S  L  D  V  D  I  L  L  S  L  M  D  H  Q  L  Q  E  F  T  C  M  T  G  L  Y  Y  Y  C  L  *  *  *  R  *  S  F  M  S  L  V  H  F  T  G  M  L  E  R  I  *  *  L  I  *  N  I  P  *  K  I  I  R  S  Q  C  G  L  F  P :   Y  M  Q  L  Y  Y  L  L  S  S  L  F  S  F  I  F  G  G  G  T  S  M  I  C  T  T  A  F  *  :  A  S  Y  L  P  F  *  L  R  Q  *  S  R  M  P  S  R  M  E  *  A  V  P  D  Q  I  F  S  G  V  A  F  L  M  V  K  M :   S  M  I  S  G  E  T  *  N  A  M  V  K  Q  V  I  L  R  K  D  I  R  A  S  Q  A  G  I  P  H  :  G  H  L  L  V  S  G  F  Y  R  C  I  *  Q  G  R  L  K  H  L  I  A  E  G  M  W  Q  N  Y  A  *  F  F  F  L  S  *  W  H  L  L  L  G  S  H  V  W  M  T  T  G  I  I  G  K  T  C  S  L  E  E  *  *  :  A  F  S  L  L  H  S  V  T  C  S  S  S  L  L  H  T  I  L  K  :  D  G  D  H  M  H  I  S  G  L  W  R  R  F  V  V  A  D  H  T  S  T  L  L  M  E  D  *  R  R  N  I  L  R  Y  N  *  I  S  E  R  V  Q  L  P  I  H  L  R  M  W  S  M  A  E  C  E  T  *  E  T  A  Y  I  F  V  Q  S  I  L  I  G  T  V  C  Y  F  L  V  N  I  Y  V  C  F  C  *  V  F  *  L  *  G  T  I  *  L  L  K  L  F  *  S  V  A  S  S  F  F  C  V  C  V  I  C  C  I  I  S  L  L  V  D  N  F  V  I  I  S  F  I  P  *  A  K  D  H  F  V  </second_frame>
            <third_frame>   E  G  F  F  A  D  K  S  C  F  L  S  *  S  R :   S  Q  E  I  G  L  K  Y  Q  Q  C  L  N  G  L  E  R  Q  D  *  N  C  V  S   : G  *  Y  K  *  D  *  A  W  M  W  T  Y  Y  *  V  S  W  I  I  S  C  K  N  S  H  A  *  L  A  Y  I  T  T  A  C  S  N  R  G  S  P  L  C  H  W  S  I  S  P  V  C  W  K  G  Y  D  D  *  S  E  I  S  H  E  R  *  Y  G  P  S  V  V  C  S   : P  I  C  S  C  I  T  Y  Y  H  L  Y  F  R  L  S  S  E  E  G  H  L  *  S  A  P  Q  H  S  R :   P  L  I  C  R  S  N  Y  G  S  N  H  G  C  H  Q  E  W  S  R  P  S  P  T  R  F  F  L  A  L  L  S  *  W  *  R   : *  V  *  S  V  G  R  R  K  M  P  W  *  S  K  *  Y  *  G  R  T  *  E  L  P  K  R  A  Y  L  M :   V  I  C  W  S  R  V  S  I  V  V  F  S  R  E  D  *  S  I  *  S  P  R  A  C  G  K  T  M  H  S  S  S  S  S  P  N  G  I  S  C  W  G  L  T  C  G  *  L  L  A  S  L  A  R  R  V  H  W  R  N  D  R :   P  F  R  C  Y  I  L  L  P  A  V  L  P  C  S  I  P  Y  *  R :   M  G  T  I  C  I  F  P  G  C  G  G  G  S  *  *  Q  T  T  R  P  P  Y  *  W  R  I  R  D  G  T  S  *  G  T  T  E  S  A  N  G  Y  N  S  Q  S  I  *  G  C  G  V  W  Q  N  V  R  H  R  K  L  L  I  F  L  F  K  V  F  *  L  A  Q  F  V  I  F  L  *  I  F  M  F  V  F  V  K  Y  F  S  Y  R  E  L  F  D  Y  *  N  C  F  N  Q  W  Q  V  L  F  F  V  C  V  *  F  V  A  *  L  V  Y  W  L  I  I  L  S  L  F  L  S  F  L  E  L  K  I  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26239" stop="26274"/>
                    <exon start="27221" stop="27445"/>
                    <exon start="27676" stop="27763"/>
                    <exon start="27931" stop="28040"/>
                    <exon start="28270" stop="28360"/>
                    <exon start="28453" stop="28641"/>
                    <exon start="28726" stop="28785"/>
                    <exon start="29180" stop="29349"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGWKDKIRTVFQGNTNEIELGCGHTIKSHGSSVARIHMHDWLILLLLVVIEVVLYVIGPFHRYVGKDMMTDLKYPMKDNTVPVWSVPLYAVVLPIIIFIFVYLRRRDIYDLHHSILGLLFAVLITAVITDAIKNGVGRPRPDFFWRCFPDGKDEYDQWGDVKCHGKASDIKEGHKSFPSGHTSWSFAGLGFLSLYLAGKIKAFDRRGHVAKLCIVLLPLLMASLVGVSRVDDYWHHWQDVFTGGMIGLFVATFCYLQFFPAPYHTEGWGPYAYFRAVEEVRSSRPHVHPTNGGLETEHPEVQLNQRTGTTPNPFEDVEYGRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25973" e_stop="26027"/>
            <exon e_start="26177" e_stop="26274"/>
            <exon e_start="27221" e_stop="27445"/>
            <exon e_start="27676" e_stop="27763"/>
            <exon e_start="27931" e_stop="28040"/>
            <exon e_start="28270" e_stop="28360"/>
            <exon e_start="28453" e_stop="28641"/>
            <exon e_start="28726" e_stop="28785"/>
            <exon e_start="29180" e_stop="29597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.728" acc_prob="0.000" e_score="0.909"/>
          <exon-intron don_prob="0.970" acc_prob="0.987" e_score="0.914"/>
          <exon-intron don_prob="0.845" acc_prob="0.000" e_score="0.973"/>
          <exon-intron don_prob="0.873" acc_prob="0.998" e_score="0.977"/>
          <exon-intron don_prob="0.910" acc_prob="0.994" e_score="0.964"/>
          <exon-intron don_prob="0.977" acc_prob="0.952" e_score="0.989"/>
          <exon-intron don_prob="0.863" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="25973" e_stop="26027" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.728" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26028" i_stop="26176" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="0.914">
            <gDNA_exon_boundary e_start="26177" e_stop="26274" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.987">
            <gDNA_intron_boundary i_start="26275" i_stop="27220" i_length="946"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="27221" e_stop="27445" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.845" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27446" i_stop="27675" i_length="230"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="27676" e_stop="27763" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.873" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27764" i_stop="27930" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="0.964">
            <gDNA_exon_boundary e_start="27931" e_stop="28040" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.910" acc_prob="0.994">
            <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="28270" e_stop="28360" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.952">
            <gDNA_intron_boundary i_start="28361" i_stop="28452" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28453" e_stop="28641" e_length="189"/>
          </exon>
          <intron i_serial="7" don_prob="0.863" acc_prob="0.916">
            <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28726" e_stop="28785" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394"/>
          </intron>
          <exon e_serial="9" e_score="0.962">
            <gDNA_exon_boundary e_start="29180" e_stop="29597" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25973" stop="26027"/>
              <exon start="26177" stop="26274"/>
              <exon start="27221" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26205" stop="26274"/>
              <exon start="27221" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27222" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28018" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28027" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28030" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28507" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411655" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATATAATGTAGAAGGATTCTTTGCTGATAAATCATGTTTCCTTTCTTAATCTCG : TTTTGGTGGTTTTTTGGATTTTAGATCCCAAGAGATTGGACTGAAGTATCAACAGTGCTTAAATGGGTTGGAAAGACAAGATTAGAACTGTGTTTCAG : GGTAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTACTACTGCTTGTAGTAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCC : CTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCGGAGGAGGGACATCTATGATCTGCACCACAGCATTCTAG : GCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGAT : GAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACATAAGAGCTTCCCAAGCGGGCATACCTCAT : GGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAG : GCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAG : GATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTTTTTTTTGTGTGTGTGTAATTTGTTGCATAATTAGTTTATTGGTTGATAATTTTGTCATTATTTCTTTCATTCCTTGAGCTAAAGATCATTTTGTTA</gDNA_template>
            <first_frame> D  I  M  *  K  D  S  L  L  I  N  H  V  S  F  L  N  L   : V  L  V  V  F  W  I  L  D  P  K  R  L  D  *  S  I  N  S  A  *  M  G  W  K  D  K  I  R  T  V  F  Q  :  G  N  T  N  E  I  E  L  G  C  G  H  T  I  K  S  H  G  S  S  V  A  R  I  H  M  H  D  W  L  I  L  L  L  L  V  V  I  E  V  V  L  Y  V  I  G  P  F  H  R  Y  V  G  K  D  M  M  T  D  L  K  Y  P  M  K  D  N  T  V  P  V  W  S  V  P  :  L  Y  A  V  V  L  P  I  I  I  F  I  F  V  Y  L  R  R  R  D  I  Y  D  L  H  H  S  I  L   : G  L  L  F  A  V  L  I  T  A  V  I  T  D  A  I  K  N  G  V  G  R  P  R  P  D  F  F  W  R  C  F  P  D  G  K  D  :  E  Y  D  Q  W  G  D  V  K  C  H  G  K  A  S  D  I  K  E  G  H  K  S  F  P  S  G  H  T  S   : W  S  F  A  G  L  G  F  L  S  L  Y  L  A  G  K  I  K  A  F  D  R  R  G  H  V  A  K  L  C  I  V  L  L  P  L  L  M  A  S  L  V  G  V  S  R  V  D  D  Y  W  H  H  W  Q  D  V  F  T  G  G  M  I   : G  L  F  V  A  T  F  C  Y  L  Q  F  F  P  A  P  Y  H  T  E   : G  W  G  P  Y  A  Y  F  R  A  V  E  E  V  R  S  S  R  P  H  V  H  P  T  N  G  G  L  E  T  E  H  P  E  V  Q  L  N  Q  R  T  G  T  T  P  N  P  F  E  D  V  E  Y  G  R  M  *  D  I  G  N  C  L  Y  F  C  S  K  Y  F  N  W  H  S  L  L  F  S  C  E  Y  L  C  L  F  L  L  S  I  L  A  I  G  N  Y  L  I  T  E  I  V  L  I  S  G  K  F  F  F  L  C  V  C  N  L  L  H  N  *  F  I  G  *  *  F  C  H  Y  F  F  H  S  L  S  *  R  S  F  C   </first_frame>
            <second_frame>  I  *  C  R  R  I  L  C  *  *  I  M  F  P  F  L  I  S  :  F  W  W  F  F  G  F  *  I  P  R  D  W  T  E  V  S  T  V  L  K  W  V  G  K  T  R  L  E  L  C  F  R :   V  I  Q  M  R  L  S  L  D  V  D  I  L  L  S  L  M  D  H  Q  L  Q  E  F  T  C  M  T  G  L  Y  Y  Y  C  L  *  *  *  R  *  S  F  M  S  L  V  H  F  T  G  M  L  E  R  I  *  *  L  I  *  N  I  P  *  K  I  I  R  S  Q  C  G  L  F  P :   Y  M  Q  L  Y  Y  L  L  S  S  L  F  S  F  I  F  G  G  G  T  S  M  I  C  T  T  A  F  *  :  A  S  Y  L  P  F  *  L  R  Q  *  S  R  M  P  S  R  M  E  *  A  V  P  D  Q  I  F  S  G  V  A  F  L  M  V  K  M :   S  M  I  S  G  E  T  *  N  A  M  V  K  Q  V  I  L  R  K  D  I  R  A  S  Q  A  G  I  P  H  :  G  H  L  L  V  S  G  F  Y  R  C  I  *  Q  G  R  L  K  H  L  I  A  E  G  M  W  Q  N  Y  A  *  F  F  F  L  S  *  W  H  L  L  L  G  S  H  V  W  M  T  T  G  I  I  G  K  T  C  S  L  E  E  *  *  :  A  F  S  L  L  H  S  V  T  C  S  S  S  L  L  H  T  I  L  K  :  D  G  D  H  M  H  I  S  G  L  W  R  R  F  V  V  A  D  H  T  S  T  L  L  M  E  D  *  R  R  N  I  L  R  Y  N  *  I  S  E  R  V  Q  L  P  I  H  L  R  M  W  S  M  A  E  C  E  T  *  E  T  A  Y  I  F  V  Q  S  I  L  I  G  T  V  C  Y  F  L  V  N  I  Y  V  C  F  C  *  V  F  *  L  *  G  T  I  *  L  L  K  L  F  *  S  V  A  S  S  F  F  C  V  C  V  I  C  C  I  I  S  L  L  V  D  N  F  V  I  I  S  F  I  P  *  A  K  D  H  F  V  </second_frame>
            <third_frame>   Y  N  V  E  G  F  F  A  D  K  S  C  F  L  S  *  S  R :   F  G  G  F  L  D  F  R  S  Q  E  I  G  L  K  Y  Q  Q  C  L  N  G  L  E  R  Q  D  *  N  C  V  S   : G  *  Y  K  *  D  *  A  W  M  W  T  Y  Y  *  V  S  W  I  I  S  C  K  N  S  H  A  *  L  A  Y  I  T  T  A  C  S  N  R  G  S  P  L  C  H  W  S  I  S  P  V  C  W  K  G  Y  D  D  *  S  E  I  S  H  E  R  *  Y  G  P  S  V  V  C  S   : P  I  C  S  C  I  T  Y  Y  H  L  Y  F  R  L  S  S  E  E  G  H  L  *  S  A  P  Q  H  S  R :   P  L  I  C  R  S  N  Y  G  S  N  H  G  C  H  Q  E  W  S  R  P  S  P  T  R  F  F  L  A  L  L  S  *  W  *  R   : *  V  *  S  V  G  R  R  K  M  P  W  *  S  K  *  Y  *  G  R  T  *  E  L  P  K  R  A  Y  L  M :   V  I  C  W  S  R  V  S  I  V  V  F  S  R  E  D  *  S  I  *  S  P  R  A  C  G  K  T  M  H  S  S  S  S  S  P  N  G  I  S  C  W  G  L  T  C  G  *  L  L  A  S  L  A  R  R  V  H  W  R  N  D  R :   P  F  R  C  Y  I  L  L  P  A  V  L  P  C  S  I  P  Y  *  R :   M  G  T  I  C  I  F  P  G  C  G  G  G  S  *  *  Q  T  T  R  P  P  Y  *  W  R  I  R  D  G  T  S  *  G  T  T  E  S  A  N  G  Y  N  S  Q  S  I  *  G  C  G  V  W  Q  N  V  R  H  R  K  L  L  I  F  L  F  K  V  F  *  L  A  Q  F  V  I  F  L  *  I  F  M  F  V  F  V  K  Y  F  S  Y  R  E  L  F  D  Y  *  N  C  F  N  Q  W  Q  V  L  F  F  V  C  V  *  F  V  A  *  L  V  Y  W  L  I  I  L  S  L  F  L  S  F  L  E  L  K  I  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26239" stop="26274"/>
                    <exon start="27221" stop="27445"/>
                    <exon start="27676" stop="27763"/>
                    <exon start="27931" stop="28040"/>
                    <exon start="28270" stop="28360"/>
                    <exon start="28453" stop="28641"/>
                    <exon start="28726" stop="28785"/>
                    <exon start="29180" stop="29349"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGWKDKIRTVFQGNTNEIELGCGHTIKSHGSSVARIHMHDWLILLLLVVIEVVLYVIGPFHRYVGKDMMTDLKYPMKDNTVPVWSVPLYAVVLPIIIFIFVYLRRRDIYDLHHSILGLLFAVLITAVITDAIKNGVGRPRPDFFWRCFPDGKDEYDQWGDVKCHGKASDIKEGHKSFPSGHTSWSFAGLGFLSLYLAGKIKAFDRRGHVAKLCIVLLPLLMASLVGVSRVDDYWHHWQDVFTGGMIGLFVATFCYLQFFPAPYHTEGWGPYAYFRAVEEVRSSRPHVHPTNGGLETEHPEVQLNQRTGTTPNPFEDVEYGRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="25982" e_stop="26027"/>
            <exon e_start="26201" e_stop="26274"/>
            <exon e_start="27221" e_stop="27445"/>
            <exon e_start="27676" e_stop="27763"/>
            <exon e_start="27931" e_stop="28040"/>
            <exon e_start="28270" e_stop="28360"/>
            <exon e_start="28453" e_stop="28641"/>
            <exon e_start="28726" e_stop="28785"/>
            <exon e_start="29180" e_stop="29505"/>
            <exon e_start="29616" e_stop="29632"/>
            <exon e_start="30120" e_stop="30203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.728" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.845" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="0.916" e_score="0.984"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.809" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.706"/>
          <exon-only e_score="0.452"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25982" e_stop="26027" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.728" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26028" i_stop="26200" i_length="173"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26201" e_stop="26274" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.987">
            <gDNA_intron_boundary i_start="26275" i_stop="27220" i_length="946"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27221" e_stop="27445" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.845" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27446" i_stop="27675" i_length="230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27676" e_stop="27763" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.873" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27764" i_stop="27930" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27931" e_stop="28040" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.910" acc_prob="0.994">
            <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28270" e_stop="28360" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.952">
            <gDNA_intron_boundary i_start="28361" i_stop="28452" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="28453" e_stop="28641" e_length="189"/>
          </exon>
          <intron i_serial="7" don_prob="0.863" acc_prob="0.916">
            <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28726" e_stop="28785" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29180" e_stop="29505" e_length="326"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.809">
            <gDNA_intron_boundary i_start="29506" i_stop="29615" i_length="110"/>
          </intron>
          <exon e_serial="10" e_score="0.706">
            <gDNA_exon_boundary e_start="29616" e_stop="29632" e_length="17"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29633" i_stop="30119" i_length="487"/>
          </intron>
          <exon e_serial="11" e_score="0.452">
            <gDNA_exon_boundary e_start="30120" e_stop="30203" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25982" stop="26027"/>
              <exon start="26201" stop="26274"/>
              <exon start="27221" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25982" stop="26027"/>
              <exon start="26201" stop="26274"/>
              <exon start="27221" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26205" stop="26274"/>
              <exon start="27221" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27222" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28027" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28030" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28524" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29505"/>
              <exon start="29616" stop="29632"/>
              <exon start="30120" stop="30203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGAAGGATTCTTTGCTGATAAATCATGTTTCCTTTCTTAATCTCG : ATCCCAAGAGATTGGACTGAAGTATCAACAGTGCTTAAATGGGTTGGAAAGACAAGATTAGAACTGTGTTTCAG : GGTAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTACTACTGCTTGTAGTAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCC : CTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCGGAGGAGGGACATCTATGATCTGCACCACAGCATTCTAG : GCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGAT : GAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACATAAGAGCTTCCCAAGCGGGCATACCTCAT : GGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAG : GCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAG : GATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTTTTTT : TACTTAAAAAGGAAAAA : AAAATACAAAAATAAAATAAAAAATCCGACAATCGACACATATGACGTGTGTTTATACATCTGGCTGTGTAGCCTAGTGATCAA</gDNA_template>
            <first_frame> *  K  D  S  L  L  I  N  H  V  S  F  L  N  L   : D  P  K  R  L  D  *  S  I  N  S  A  *  M  G  W  K  D  K  I  R  T  V  F  Q  :  G  N  T  N  E  I  E  L  G  C  G  H  T  I  K  S  H  G  S  S  V  A  R  I  H  M  H  D  W  L  I  L  L  L  L  V  V  I  E  V  V  L  Y  V  I  G  P  F  H  R  Y  V  G  K  D  M  M  T  D  L  K  Y  P  M  K  D  N  T  V  P  V  W  S  V  P  :  L  Y  A  V  V  L  P  I  I  I  F  I  F  V  Y  L  R  R  R  D  I  Y  D  L  H  H  S  I  L   : G  L  L  F  A  V  L  I  T  A  V  I  T  D  A  I  K  N  G  V  G  R  P  R  P  D  F  F  W  R  C  F  P  D  G  K  D  :  E  Y  D  Q  W  G  D  V  K  C  H  G  K  A  S  D  I  K  E  G  H  K  S  F  P  S  G  H  T  S   : W  S  F  A  G  L  G  F  L  S  L  Y  L  A  G  K  I  K  A  F  D  R  R  G  H  V  A  K  L  C  I  V  L  L  P  L  L  M  A  S  L  V  G  V  S  R  V  D  D  Y  W  H  H  W  Q  D  V  F  T  G  G  M  I   : G  L  F  V  A  T  F  C  Y  L  Q  F  F  P  A  P  Y  H  T  E   : G  W  G  P  Y  A  Y  F  R  A  V  E  E  V  R  S  S  R  P  H  V  H  P  T  N  G  G  L  E  T  E  H  P  E  V  Q  L  N  Q  R  T  G  T  T  P  N  P  F  E  D  V  E  Y  G  R  M  *  D  I  G  N  C  L  Y  F  C  S  K  Y  F  N  W  H  S  L  L  F  S  C  E  Y  L  C  L  F  L  L  S  I  L  A  I  G  N  Y  L  I  T  E  I  V  L  I  S  G  K  F  F  F  :  Y  L  K  R  K  K :   K  Y  K  N  K  I  K  N  P  T  I  D  T  Y  D  V  C  L  Y  I  W  L  C  S  L  V  I   </first_frame>
            <second_frame>  R  R  I  L  C  *  *  I  M  F  P  F  L  I  S  :  I  P  R  D  W  T  E  V  S  T  V  L  K  W  V  G  K  T  R  L  E  L  C  F  R :   V  I  Q  M  R  L  S  L  D  V  D  I  L  L  S  L  M  D  H  Q  L  Q  E  F  T  C  M  T  G  L  Y  Y  Y  C  L  *  *  *  R  *  S  F  M  S  L  V  H  F  T  G  M  L  E  R  I  *  *  L  I  *  N  I  P  *  K  I  I  R  S  Q  C  G  L  F  P :   Y  M  Q  L  Y  Y  L  L  S  S  L  F  S  F  I  F  G  G  G  T  S  M  I  C  T  T  A  F  *  :  A  S  Y  L  P  F  *  L  R  Q  *  S  R  M  P  S  R  M  E  *  A  V  P  D  Q  I  F  S  G  V  A  F  L  M  V  K  M :   S  M  I  S  G  E  T  *  N  A  M  V  K  Q  V  I  L  R  K  D  I  R  A  S  Q  A  G  I  P  H  :  G  H  L  L  V  S  G  F  Y  R  C  I  *  Q  G  R  L  K  H  L  I  A  E  G  M  W  Q  N  Y  A  *  F  F  F  L  S  *  W  H  L  L  L  G  S  H  V  W  M  T  T  G  I  I  G  K  T  C  S  L  E  E  *  *  :  A  F  S  L  L  H  S  V  T  C  S  S  S  L  L  H  T  I  L  K  :  D  G  D  H  M  H  I  S  G  L  W  R  R  F  V  V  A  D  H  T  S  T  L  L  M  E  D  *  R  R  N  I  L  R  Y  N  *  I  S  E  R  V  Q  L  P  I  H  L  R  M  W  S  M  A  E  C  E  T  *  E  T  A  Y  I  F  V  Q  S  I  L  I  G  T  V  C  Y  F  L  V  N  I  Y  V  C  F  C  *  V  F  *  L  *  G  T  I  *  L  L  K  L  F  *  S  V  A  S  S  F  F :   T  *  K  G  K   : K  N  T  K  I  K  *  K  I  R  Q  S  T  H  M  T  C  V  Y  T  S  G  C  V  A  *  *  S  </second_frame>
            <third_frame>   E  G  F  F  A  D  K  S  C  F  L  S  *  S  R :   S  Q  E  I  G  L  K  Y  Q  Q  C  L  N  G  L  E  R  Q  D  *  N  C  V  S   : G  *  Y  K  *  D  *  A  W  M  W  T  Y  Y  *  V  S  W  I  I  S  C  K  N  S  H  A  *  L  A  Y  I  T  T  A  C  S  N  R  G  S  P  L  C  H  W  S  I  S  P  V  C  W  K  G  Y  D  D  *  S  E  I  S  H  E  R  *  Y  G  P  S  V  V  C  S   : P  I  C  S  C  I  T  Y  Y  H  L  Y  F  R  L  S  S  E  E  G  H  L  *  S  A  P  Q  H  S  R :   P  L  I  C  R  S  N  Y  G  S  N  H  G  C  H  Q  E  W  S  R  P  S  P  T  R  F  F  L  A  L  L  S  *  W  *  R   : *  V  *  S  V  G  R  R  K  M  P  W  *  S  K  *  Y  *  G  R  T  *  E  L  P  K  R  A  Y  L  M :   V  I  C  W  S  R  V  S  I  V  V  F  S  R  E  D  *  S  I  *  S  P  R  A  C  G  K  T  M  H  S  S  S  S  S  P  N  G  I  S  C  W  G  L  T  C  G  *  L  L  A  S  L  A  R  R  V  H  W  R  N  D  R :   P  F  R  C  Y  I  L  L  P  A  V  L  P  C  S  I  P  Y  *  R :   M  G  T  I  C  I  F  P  G  C  G  G  G  S  *  *  Q  T  T  R  P  P  Y  *  W  R  I  R  D  G  T  S  *  G  T  T  E  S  A  N  G  Y  N  S  Q  S  I  *  G  C  G  V  W  Q  N  V  R  H  R  K  L  L  I  F  L  F  K  V  F  *  L  A  Q  F  V  I  F  L  *  I  F  M  F  V  F  V  K  Y  F  S  Y  R  E  L  F  D  Y  *  N  C  F  N  Q  W  Q  V  L  F   : L  L  K  K  E  K  :  K  I  Q  K  *  N  K  K  S  D  N  R  H  I  *  R  V  F  I  H  L  A  V  *  P  S  D  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26239" stop="26274"/>
                    <exon start="27221" stop="27445"/>
                    <exon start="27676" stop="27763"/>
                    <exon start="27931" stop="28040"/>
                    <exon start="28270" stop="28360"/>
                    <exon start="28453" stop="28641"/>
                    <exon start="28726" stop="28785"/>
                    <exon start="29180" stop="29349"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGWKDKIRTVFQGNTNEIELGCGHTIKSHGSSVARIHMHDWLILLLLVVIEVVLYVIGPFHRYVGKDMMTDLKYPMKDNTVPVWSVPLYAVVLPIIIFIFVYLRRRDIYDLHHSILGLLFAVLITAVITDAIKNGVGRPRPDFFWRCFPDGKDEYDQWGDVKCHGKASDIKEGHKSFPSGHTSWSFAGLGFLSLYLAGKIKAFDRRGHVAKLCIVLLPLLMASLVGVSRVDDYWHHWQDVFTGGMIGLFVATFCYLQFFPAPYHTEGWGPYAYFRAVEEVRSSRPHVHPTNGGLETEHPEVQLNQRTGTTPNPFEDVEYGRM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29350" stop="29505"/>
                    <exon start="29616" stop="29632"/>
                    <exon start="30120" stop="30201"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIGNCLYFCSKYFNWHSLLFSCEYLCLFLLSILAIGNYLITEIVLISGKFFFYLKRKKKYKNKIKNPTIDTYDVCLYIWLCSLVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="25982" e_stop="26027"/>
            <exon e_start="26201" e_stop="26274"/>
            <exon e_start="27221" e_stop="27445"/>
            <exon e_start="27676" e_stop="27763"/>
            <exon e_start="27931" e_stop="28040"/>
            <exon e_start="28270" e_stop="28360"/>
            <exon e_start="28453" e_stop="28641"/>
            <exon e_start="28726" e_stop="28785"/>
            <exon e_start="29180" e_stop="29501"/>
            <exon e_start="29616" e_stop="29632"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.728" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.845" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="0.916" e_score="0.984"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.809" e_score="1.000"/>
          <exon-only e_score="0.765"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25982" e_stop="26027" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.728" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26028" i_stop="26200" i_length="173"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26201" e_stop="26274" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.987">
            <gDNA_intron_boundary i_start="26275" i_stop="27220" i_length="946"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27221" e_stop="27445" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.845" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27446" i_stop="27675" i_length="230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27676" e_stop="27763" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.873" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27764" i_stop="27930" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27931" e_stop="28040" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.910" acc_prob="0.994">
            <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28270" e_stop="28360" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.952">
            <gDNA_intron_boundary i_start="28361" i_stop="28452" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="28453" e_stop="28641" e_length="189"/>
          </exon>
          <intron i_serial="7" don_prob="0.863" acc_prob="0.916">
            <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28726" e_stop="28785" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29180" e_stop="29501" e_length="322"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.809">
            <gDNA_intron_boundary i_start="29502" i_stop="29615" i_length="114"/>
          </intron>
          <exon e_serial="10" e_score="0.765">
            <gDNA_exon_boundary e_start="29616" e_stop="29632" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25982" stop="26027"/>
              <exon start="26201" stop="26274"/>
              <exon start="27221" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25982" stop="26027"/>
              <exon start="26201" stop="26274"/>
              <exon start="27221" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26205" stop="26274"/>
              <exon start="27221" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27222" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28027" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28030" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28493" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29501"/>
              <exon start="29616" stop="29632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGAAGGATTCTTTGCTGATAAATCATGTTTCCTTTCTTAATCTCG : ATCCCAAGAGATTGGACTGAAGTATCAACAGTGCTTAAATGGGTTGGAAAGACAAGATTAGAACTGTGTTTCAG : GGTAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTACTACTGCTTGTAGTAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCC : CTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCGGAGGAGGGACATCTATGATCTGCACCACAGCATTCTAG : GCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGAT : GAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACATAAGAGCTTCCCAAGCGGGCATACCTCAT : GGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAG : GCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAG : GATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTT : TACTTAAAAAGGAAAAA</gDNA_template>
            <first_frame> *  K  D  S  L  L  I  N  H  V  S  F  L  N  L   : D  P  K  R  L  D  *  S  I  N  S  A  *  M  G  W  K  D  K  I  R  T  V  F  Q  :  G  N  T  N  E  I  E  L  G  C  G  H  T  I  K  S  H  G  S  S  V  A  R  I  H  M  H  D  W  L  I  L  L  L  L  V  V  I  E  V  V  L  Y  V  I  G  P  F  H  R  Y  V  G  K  D  M  M  T  D  L  K  Y  P  M  K  D  N  T  V  P  V  W  S  V  P  :  L  Y  A  V  V  L  P  I  I  I  F  I  F  V  Y  L  R  R  R  D  I  Y  D  L  H  H  S  I  L   : G  L  L  F  A  V  L  I  T  A  V  I  T  D  A  I  K  N  G  V  G  R  P  R  P  D  F  F  W  R  C  F  P  D  G  K  D  :  E  Y  D  Q  W  G  D  V  K  C  H  G  K  A  S  D  I  K  E  G  H  K  S  F  P  S  G  H  T  S   : W  S  F  A  G  L  G  F  L  S  L  Y  L  A  G  K  I  K  A  F  D  R  R  G  H  V  A  K  L  C  I  V  L  L  P  L  L  M  A  S  L  V  G  V  S  R  V  D  D  Y  W  H  H  W  Q  D  V  F  T  G  G  M  I   : G  L  F  V  A  T  F  C  Y  L  Q  F  F  P  A  P  Y  H  T  E   : G  W  G  P  Y  A  Y  F  R  A  V  E  E  V  R  S  S  R  P  H  V  H  P  T  N  G  G  L  E  T  E  H  P  E  V  Q  L  N  Q  R  T  G  T  T  P  N  P  F  E  D  V  E  Y  G  R  M  *  D  I  G  N  C  L  Y  F  C  S  K  Y  F  N  W  H  S  L  L  F  S  C  E  Y  L  C  L  F  L  L  S  I  L  A  I  G  N  Y  L  I  T  E  I  V  L  I  S  G  K  F  F :   T  *  K  G  K  </first_frame>
            <second_frame>  R  R  I  L  C  *  *  I  M  F  P  F  L  I  S  :  I  P  R  D  W  T  E  V  S  T  V  L  K  W  V  G  K  T  R  L  E  L  C  F  R :   V  I  Q  M  R  L  S  L  D  V  D  I  L  L  S  L  M  D  H  Q  L  Q  E  F  T  C  M  T  G  L  Y  Y  Y  C  L  *  *  *  R  *  S  F  M  S  L  V  H  F  T  G  M  L  E  R  I  *  *  L  I  *  N  I  P  *  K  I  I  R  S  Q  C  G  L  F  P :   Y  M  Q  L  Y  Y  L  L  S  S  L  F  S  F  I  F  G  G  G  T  S  M  I  C  T  T  A  F  *  :  A  S  Y  L  P  F  *  L  R  Q  *  S  R  M  P  S  R  M  E  *  A  V  P  D  Q  I  F  S  G  V  A  F  L  M  V  K  M :   S  M  I  S  G  E  T  *  N  A  M  V  K  Q  V  I  L  R  K  D  I  R  A  S  Q  A  G  I  P  H  :  G  H  L  L  V  S  G  F  Y  R  C  I  *  Q  G  R  L  K  H  L  I  A  E  G  M  W  Q  N  Y  A  *  F  F  F  L  S  *  W  H  L  L  L  G  S  H  V  W  M  T  T  G  I  I  G  K  T  C  S  L  E  E  *  *  :  A  F  S  L  L  H  S  V  T  C  S  S  S  L  L  H  T  I  L  K  :  D  G  D  H  M  H  I  S  G  L  W  R  R  F  V  V  A  D  H  T  S  T  L  L  M  E  D  *  R  R  N  I  L  R  Y  N  *  I  S  E  R  V  Q  L  P  I  H  L  R  M  W  S  M  A  E  C  E  T  *  E  T  A  Y  I  F  V  Q  S  I  L  I  G  T  V  C  Y  F  L  V  N  I  Y  V  C  F  C  *  V  F  *  L  *  G  T  I  *  L  L  K  L  F  *  S  V  A  S  S   : L  L  K  K  E  K </second_frame>
            <third_frame>   E  G  F  F  A  D  K  S  C  F  L  S  *  S  R :   S  Q  E  I  G  L  K  Y  Q  Q  C  L  N  G  L  E  R  Q  D  *  N  C  V  S   : G  *  Y  K  *  D  *  A  W  M  W  T  Y  Y  *  V  S  W  I  I  S  C  K  N  S  H  A  *  L  A  Y  I  T  T  A  C  S  N  R  G  S  P  L  C  H  W  S  I  S  P  V  C  W  K  G  Y  D  D  *  S  E  I  S  H  E  R  *  Y  G  P  S  V  V  C  S   : P  I  C  S  C  I  T  Y  Y  H  L  Y  F  R  L  S  S  E  E  G  H  L  *  S  A  P  Q  H  S  R :   P  L  I  C  R  S  N  Y  G  S  N  H  G  C  H  Q  E  W  S  R  P  S  P  T  R  F  F  L  A  L  L  S  *  W  *  R   : *  V  *  S  V  G  R  R  K  M  P  W  *  S  K  *  Y  *  G  R  T  *  E  L  P  K  R  A  Y  L  M :   V  I  C  W  S  R  V  S  I  V  V  F  S  R  E  D  *  S  I  *  S  P  R  A  C  G  K  T  M  H  S  S  S  S  S  P  N  G  I  S  C  W  G  L  T  C  G  *  L  L  A  S  L  A  R  R  V  H  W  R  N  D  R :   P  F  R  C  Y  I  L  L  P  A  V  L  P  C  S  I  P  Y  *  R :   M  G  T  I  C  I  F  P  G  C  G  G  G  S  *  *  Q  T  T  R  P  P  Y  *  W  R  I  R  D  G  T  S  *  G  T  T  E  S  A  N  G  Y  N  S  Q  S  I  *  G  C  G  V  W  Q  N  V  R  H  R  K  L  L  I  F  L  F  K  V  F  *  L  A  Q  F  V  I  F  L  *  I  F  M  F  V  F  V  K  Y  F  S  Y  R  E  L  F  D  Y  *  N  C  F  N  Q  W  Q  V  L  :  Y  L  K  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26239" stop="26274"/>
                    <exon start="27221" stop="27445"/>
                    <exon start="27676" stop="27763"/>
                    <exon start="27931" stop="28040"/>
                    <exon start="28270" stop="28360"/>
                    <exon start="28453" stop="28641"/>
                    <exon start="28726" stop="28785"/>
                    <exon start="29180" stop="29349"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGWKDKIRTVFQGNTNEIELGCGHTIKSHGSSVARIHMHDWLILLLLVVIEVVLYVIGPFHRYVGKDMMTDLKYPMKDNTVPVWSVPLYAVVLPIIIFIFVYLRRRDIYDLHHSILGLLFAVLITAVITDAIKNGVGRPRPDFFWRCFPDGKDEYDQWGDVKCHGKASDIKEGHKSFPSGHTSWSFAGLGFLSLYLAGKIKAFDRRGHVAKLCIVLLPLLMASLVGVSRVDDYWHHWQDVFTGGMIGLFVATFCYLQFFPAPYHTEGWGPYAYFRAVEEVRSSRPHVHPTNGGLETEHPEVQLNQRTGTTPNPFEDVEYGRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="24613" e_stop="24830"/>
            <exon e_start="25132" e_stop="25182"/>
            <exon e_start="26218" e_stop="26274"/>
            <exon e_start="27221" e_stop="27445"/>
            <exon e_start="27676" e_stop="27763"/>
            <exon e_start="27931" e_stop="28040"/>
            <exon e_start="28270" e_stop="28360"/>
            <exon e_start="28453" e_stop="28641"/>
            <exon e_start="28726" e_stop="28785"/>
            <exon e_start="29180" e_stop="29597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.425" e_score="0.872"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.667"/>
          <exon-intron don_prob="0.970" acc_prob="0.987" e_score="0.965"/>
          <exon-intron don_prob="0.845" acc_prob="0.000" e_score="0.973"/>
          <exon-intron don_prob="0.873" acc_prob="0.998" e_score="0.955"/>
          <exon-intron don_prob="0.910" acc_prob="0.994" e_score="0.945"/>
          <exon-intron don_prob="0.977" acc_prob="0.952" e_score="0.989"/>
          <exon-intron don_prob="0.863" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.872">
            <gDNA_exon_boundary e_start="24613" e_stop="24830" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.425">
            <gDNA_intron_boundary i_start="24831" i_stop="25131" i_length="301"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="25132" e_stop="25182" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25183" i_stop="26217" i_length="1035"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="26218" e_stop="26274" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.987">
            <gDNA_intron_boundary i_start="26275" i_stop="27220" i_length="946"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="27221" e_stop="27445" e_length="225"/>
          </exon>
          <intron i_serial="4" don_prob="0.845" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27446" i_stop="27675" i_length="230"/>
          </intron>
          <exon e_serial="5" e_score="0.955">
            <gDNA_exon_boundary e_start="27676" e_stop="27763" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.873" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27764" i_stop="27930" i_length="167"/>
          </intron>
          <exon e_serial="6" e_score="0.945">
            <gDNA_exon_boundary e_start="27931" e_stop="28040" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.910" acc_prob="0.994">
            <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="28270" e_stop="28360" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.952">
            <gDNA_intron_boundary i_start="28361" i_stop="28452" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28453" e_stop="28641" e_length="189"/>
          </exon>
          <intron i_serial="8" don_prob="0.863" acc_prob="0.916">
            <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="28726" e_stop="28785" e_length="60"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394"/>
          </intron>
          <exon e_serial="10" e_score="0.962">
            <gDNA_exon_boundary e_start="29180" e_stop="29597" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24613" stop="24830"/>
              <exon start="25132" stop="25182"/>
              <exon start="26218" stop="26274"/>
              <exon start="27221" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27222" stop="27445"/>
              <exon start="27676" stop="27763"/>
              <exon start="27931" stop="28040"/>
              <exon start="28270" stop="28285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28018" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28027" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28030" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28507" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411655" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGAAATTTTTTTATTTTTATTTTTTGTAAGTCTTAAAAACTGTCTCCTAAAGAAGAAAAATCAATTATTCAAAATTCTTTTCATACTTTATTTTTTTTTCATCTTTGTCTTGTGTAGTTATGGTCTGCCATTGCTAAAGATTGAAGCTTTTATCTTCTTTTAGGGACCCATTTGAACTATTCTTTTGTTTCCCCAGTAAATATCTGCTATAAAAAG : AAGGATTCTTTGCTGATAAGGTCTGTGAGTTTGGATTCTCCATTTTATTCT : TGAAGTATCAACAGTGCTTAAATGGGTTGGAAAGACAAGATTAGAACTGTGTTTCAG : GGTAATACAAATGAGATTGAGCTTGGATGTGGACATACTATTAAGTCTCATGGATCATCAGTTGCAAGAATTCACATGCATGACTGGCTTATATTACTACTGCTTGTAGTAATAGAGGTAGTCCTTTATGTCATTGGTCCATTTCACCGGTATGTTGGAAAGGATATGATGACTGATCTGAAATATCCCATGAAAGATAATACGGTCCCAGTGTGGTCTGTTCCC : CTATATGCAGTTGTATTACCTATTATCATCTTTATTTTCGTTTATCTTCGGAGGAGGGACATCTATGATCTGCACCACAGCATTCTAG : GCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGAT : GAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACATAAGAGCTTCCCAAGCGGGCATACCTCAT : GGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAG : GCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAG : GATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTTTTTTTTGTGTGTGTGTAATTTGTTGCATAATTAGTTTATTGGTTGATAATTTTGTCATTATTTCTTTCATTCCTTGAGCTAAAGATCATTTTGTTA</gDNA_template>
            <first_frame> V  E  I  F  L  F  L  F  F  V  S  L  K  N  C  L  L  K  K  K  N  Q  L  F  K  I  L  F  I  L  Y  F  F  F  I  F  V  L  C  S  Y  G  L  P  L  L  K  I  E  A  F  I  F  F  *  G  P  I  *  T  I  L  L  F  P  Q  *  I  S  A  I  K  R :   R  I  L  C  *  *  G  L  *  V  W  I  L  H  F  I  L :   E  V  S  T  V  L  K  W  V  G  K  T  R  L  E  L  C  F  R :   V  I  Q  M  R  L  S  L  D  V  D  I  L  L  S  L  M  D  H  Q  L  Q  E  F  T  C  M  T  G  L  Y  Y  Y  C  L  *  *  *  R  *  S  F  M  S  L  V  H  F  T  G  M  L  E  R  I  *  *  L  I  *  N  I  P  *  K  I  I  R  S  Q  C  G  L  F  P :   Y  M  Q  L  Y  Y  L  L  S  S  L  F  S  F  I  F  G  G  G  T  S  M  I  C  T  T  A  F  *  :  A  S  Y  L  P  F  *  L  R  Q  *  S  R  M  P  S  R  M  E  *  A  V  P  D  Q  I  F  S  G  V  A  F  L  M  V  K  M :   S  M  I  S  G  E  T  *  N  A  M  V  K  Q  V  I  L  R  K  D  I  R  A  S  Q  A  G  I  P  H  :  G  H  L  L  V  S  G  F  Y  R  C  I  *  Q  G  R  L  K  H  L  I  A  E  G  M  W  Q  N  Y  A  *  F  F  F  L  S  *  W  H  L  L  L  G  S  H  V  W  M  T  T  G  I  I  G  K  T  C  S  L  E  E  *  *  :  A  F  S  L  L  H  S  V  T  C  S  S  S  L  L  H  T  I  L  K  :  D  G  D  H  M  H  I  S  G  L  W  R  R  F  V  V  A  D  H  T  S  T  L  L  M  E  D  *  R  R  N  I  L  R  Y  N  *  I  S  E  R  V  Q  L  P  I  H  L  R  M  W  S  M  A  E  C  E  T  *  E  T  A  Y  I  F  V  Q  S  I  L  I  G  T  V  C  Y  F  L  V  N  I  Y  V  C  F  C  *  V  F  *  L  *  G  T  I  *  L  L  K  L  F  *  S  V  A  S  S  F  F  C  V  C  V  I  C  C  I  I  S  L  L  V  D  N  F  V  I  I  S  F  I  P  *  A  K  D  H  F  V  </first_frame>
            <second_frame>  L  K  F  F  Y  F  Y  F  L  *  V  L  K  T  V  S  *  R  R  K  I  N  Y  S  K  F  F  S  Y  F  I  F  F  S  S  L  S  C  V  V  M  V  C  H  C  *  R  L  K  L  L  S  S  F  R  D  P  F  E  L  F  F  C  F  P  S  K  Y  L  L  *  K   : E  G  F  F  A  D  K  V  C  E  F  G  F  S  I  L  F   : L  K  Y  Q  Q  C  L  N  G  L  E  R  Q  D  *  N  C  V  S   : G  *  Y  K  *  D  *  A  W  M  W  T  Y  Y  *  V  S  W  I  I  S  C  K  N  S  H  A  *  L  A  Y  I  T  T  A  C  S  N  R  G  S  P  L  C  H  W  S  I  S  P  V  C  W  K  G  Y  D  D  *  S  E  I  S  H  E  R  *  Y  G  P  S  V  V  C  S   : P  I  C  S  C  I  T  Y  Y  H  L  Y  F  R  L  S  S  E  E  G  H  L  *  S  A  P  Q  H  S  R :   P  L  I  C  R  S  N  Y  G  S  N  H  G  C  H  Q  E  W  S  R  P  S  P  T  R  F  F  L  A  L  L  S  *  W  *  R   : *  V  *  S  V  G  R  R  K  M  P  W  *  S  K  *  Y  *  G  R  T  *  E  L  P  K  R  A  Y  L  M :   V  I  C  W  S  R  V  S  I  V  V  F  S  R  E  D  *  S  I  *  S  P  R  A  C  G  K  T  M  H  S  S  S  S  S  P  N  G  I  S  C  W  G  L  T  C  G  *  L  L  A  S  L  A  R  R  V  H  W  R  N  D  R :   P  F  R  C  Y  I  L  L  P  A  V  L  P  C  S  I  P  Y  *  R :   M  G  T  I  C  I  F  P  G  C  G  G  G  S  *  *  Q  T  T  R  P  P  Y  *  W  R  I  R  D  G  T  S  *  G  T  T  E  S  A  N  G  Y  N  S  Q  S  I  *  G  C  G  V  W  Q  N  V  R  H  R  K  L  L  I  F  L  F  K  V  F  *  L  A  Q  F  V  I  F  L  *  I  F  M  F  V  F  V  K  Y  F  S  Y  R  E  L  F  D  Y  *  N  C  F  N  Q  W  Q  V  L  F  F  V  C  V  *  F  V  A  *  L  V  Y  W  L  I  I  L  S  L  F  L  S  F  L  E  L  K  I  I  L  L </second_frame>
            <third_frame>   *  N  F  F  I  F  I  F  C  K  S  *  K  L  S  P  K  E  E  K  S  I  I  Q  N  S  F  H  T  L  F  F  F  H  L  C  L  V  *  L  W  S  A  I  A  K  D  *  S  F  Y  L  L  L  G  T  H  L  N  Y  S  F  V  S  P  V  N  I  C  Y  K  K  :  K  D  S  L  L  I  R  S  V  S  L  D  S  P  F  Y  S  :  *  S  I  N  S  A  *  M  G  W  K  D  K  I  R  T  V  F  Q  :  G  N  T  N  E  I  E  L  G  C  G  H  T  I  K  S  H  G  S  S  V  A  R  I  H  M  H  D  W  L  I  L  L  L  L  V  V  I  E  V  V  L  Y  V  I  G  P  F  H  R  Y  V  G  K  D  M  M  T  D  L  K  Y  P  M  K  D  N  T  V  P  V  W  S  V  P  :  L  Y  A  V  V  L  P  I  I  I  F  I  F  V  Y  L  R  R  R  D  I  Y  D  L  H  H  S  I  L   : G  L  L  F  A  V  L  I  T  A  V  I  T  D  A  I  K  N  G  V  G  R  P  R  P  D  F  F  W  R  C  F  P  D  G  K  D  :  E  Y  D  Q  W  G  D  V  K  C  H  G  K  A  S  D  I  K  E  G  H  K  S  F  P  S  G  H  T  S   : W  S  F  A  G  L  G  F  L  S  L  Y  L  A  G  K  I  K  A  F  D  R  R  G  H  V  A  K  L  C  I  V  L  L  P  L  L  M  A  S  L  V  G  V  S  R  V  D  D  Y  W  H  H  W  Q  D  V  F  T  G  G  M  I   : G  L  F  V  A  T  F  C  Y  L  Q  F  F  P  A  P  Y  H  T  E   : G  W  G  P  Y  A  Y  F  R  A  V  E  E  V  R  S  S  R  P  H  V  H  P  T  N  G  G  L  E  T  E  H  P  E  V  Q  L  N  Q  R  T  G  T  T  P  N  P  F  E  D  V  E  Y  G  R  M  *  D  I  G  N  C  L  Y  F  C  S  K  Y  F  N  W  H  S  L  L  F  S  C  E  Y  L  C  L  F  L  L  S  I  L  A  I  G  N  Y  L  I  T  E  I  V  L  I  S  G  K  F  F  F  L  C  V  C  N  L  L  H  N  *  F  I  G  *  *  F  C  H  Y  F  F  H  S  L  S  *  R  S  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26239" stop="26274"/>
                    <exon start="27221" stop="27445"/>
                    <exon start="27676" stop="27763"/>
                    <exon start="27931" stop="28040"/>
                    <exon start="28270" stop="28360"/>
                    <exon start="28453" stop="28641"/>
                    <exon start="28726" stop="28785"/>
                    <exon start="29180" stop="29349"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGWKDKIRTVFQGNTNEIELGCGHTIKSHGSSVARIHMHDWLILLLLVVIEVVLYVIGPFHRYVGKDMMTDLKYPMKDNTVPVWSVPLYAVVLPIIIFIFVYLRRRDIYDLHHSILGLLFAVLITAVITDAIKNGVGRPRPDFFWRCFPDGKDEYDQWGDVKCHGKASDIKEGHKSFPSGHTSWSFAGLGFLSLYLAGKIKAFDRRGHVAKLCIVLLPLLMASLVGVSRVDDYWHHWQDVFTGGMIGLFVATFCYLQFFPAPYHTEGWGPYAYFRAVEEVRSSRPHVHPTNGGLETEHPEVQLNQRTGTTPNPFEDVEYGRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="27929" e_stop="28040"/>
            <exon e_start="28270" e_stop="28360"/>
            <exon e_start="28453" e_stop="28641"/>
            <exon e_start="28726" e_stop="28785"/>
            <exon e_start="29180" e_stop="29597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.910" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27929" e_stop="28040" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.910" acc_prob="0.994">
            <gDNA_intron_boundary i_start="28041" i_stop="28269" i_length="229"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28270" e_stop="28360" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.952">
            <gDNA_intron_boundary i_start="28361" i_stop="28452" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28453" e_stop="28641" e_length="189"/>
          </exon>
          <intron i_serial="3" don_prob="0.863" acc_prob="0.916">
            <gDNA_intron_boundary i_start="28642" i_stop="28725" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28726" e_stop="28785" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="28786" i_stop="29179" i_length="394"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="29180" e_stop="29597" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27929" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28018" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28027" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28030" stop="28040"/>
              <exon start="28270" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28360"/>
              <exon start="28453" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28507" stop="28641"/>
              <exon start="28726" stop="28785"/>
              <exon start="29180" stop="29597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411655" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCCTCTTATTTGCCGTTCTAATTACGGCAGTAATCACGGATGCCATCAAGAATGGAGTAGGCCGTCCCCGACCAGATTTTTTCTGGCGTTGCTTTCCTGATGGTAAAGAT : GAGTATGATCAGTGGGGAGACGTAAAATGCCATGGTAAAGCAAGTGATATTAAGGAAGGACATAAGAGCTTCCCAAGCGGGCATACCTCAT : GGTCATTTGCTGGTCTCGGGTTTCTATCGTTGTATTTAGCAGGGAAGATTAAAGCATTTGATCGCCGAGGGCATGTGGCAAAACTATGCATAGTTCTTCTTCCTCTCCTAATGGCATCTCTTGTTGGGGTCTCACGTGTGGATGACTACTGGCATCATTGGCAAGACGTGTTCACTGGAGGAATGATAG : GCCTTTTCGTTGCTACATTCTGTTACCTGCAGTTCTTCCCTGCTCCATACCATACTGAAG : GATGGGGACCATATGCATATTTCCGGGCTGTGGAGGAGGTTCGTAGTAGCAGACCACACGTCCACCCTACTAATGGAGGATTAGAGACGGAACATCCTGAGGTACAACTGAATCAGCGAACGGGTACAACTCCCAATCCATTTGAGGATGTGGAGTATGGCAGAATGTGAGACATAGGAAACTGCTTATATTTTTGTTCAAAGTATTTTAATTGGCACAGTTTGTTATTTTCTTGTGAATATTTATGTTTGTTTTTGTTAAGTATTTTAGCTATAGGGAACTATTTGATTACTGAAATTGTTTTAATCAGTGGCAAGTTCTTTTTTTTGTGTGTGTGTAATTTGTTGCATAATTAGTTTATTGGTTGATAATTTTGTCATTATTTCTTTCATTCCTTGAGCTAAAGATCATTTTGTTA</gDNA_template>
            <first_frame> R  P  L  I  C  R  S  N  Y  G  S  N  H  G  C  H  Q  E  W  S  R  P  S  P  T  R  F  F  L  A  L  L  S  *  W  *  R   : *  V  *  S  V  G  R  R  K  M  P  W  *  S  K  *  Y  *  G  R  T  *  E  L  P  K  R  A  Y  L  M :   V  I  C  W  S  R  V  S  I  V  V  F  S  R  E  D  *  S  I  *  S  P  R  A  C  G  K  T  M  H  S  S  S  S  S  P  N  G  I  S  C  W  G  L  T  C  G  *  L  L  A  S  L  A  R  R  V  H  W  R  N  D  R :   P  F  R  C  Y  I  L  L  P  A  V  L  P  C  S  I  P  Y  *  R :   M  G  T  I  C  I  F  P  G  C  G  G  G  S  *  *  Q  T  T  R  P  P  Y  *  W  R  I  R  D  G  T  S  *  G  T  T  E  S  A  N  G  Y  N  S  Q  S  I  *  G  C  G  V  W  Q  N  V  R  H  R  K  L  L  I  F  L  F  K  V  F  *  L  A  Q  F  V  I  F  L  *  I  F  M  F  V  F  V  K  Y  F  S  Y  R  E  L  F  D  Y  *  N  C  F  N  Q  W  Q  V  L  F  F  V  C  V  *  F  V  A  *  L  V  Y  W  L  I  I  L  S  L  F  L  S  F  L  E  L  K  I  I  L  L </first_frame>
            <second_frame>  G  L  L  F  A  V  L  I  T  A  V  I  T  D  A  I  K  N  G  V  G  R  P  R  P  D  F  F  W  R  C  F  P  D  G  K  D  :  E  Y  D  Q  W  G  D  V  K  C  H  G  K  A  S  D  I  K  E  G  H  K  S  F  P  S  G  H  T  S   : W  S  F  A  G  L  G  F  L  S  L  Y  L  A  G  K  I  K  A  F  D  R  R  G  H  V  A  K  L  C  I  V  L  L  P  L  L  M  A  S  L  V  G  V  S  R  V  D  D  Y  W  H  H  W  Q  D  V  F  T  G  G  M  I   : G  L  F  V  A  T  F  C  Y  L  Q  F  F  P  A  P  Y  H  T  E   : G  W  G  P  Y  A  Y  F  R  A  V  E  E  V  R  S  S  R  P  H  V  H  P  T  N  G  G  L  E  T  E  H  P  E  V  Q  L  N  Q  R  T  G  T  T  P  N  P  F  E  D  V  E  Y  G  R  M  *  D  I  G  N  C  L  Y  F  C  S  K  Y  F  N  W  H  S  L  L  F  S  C  E  Y  L  C  L  F  L  L  S  I  L  A  I  G  N  Y  L  I  T  E  I  V  L  I  S  G  K  F  F  F  L  C  V  C  N  L  L  H  N  *  F  I  G  *  *  F  C  H  Y  F  F  H  S  L  S  *  R  S  F  C   </second_frame>
            <third_frame>   A  S  Y  L  P  F  *  L  R  Q  *  S  R  M  P  S  R  M  E  *  A  V  P  D  Q  I  F  S  G  V  A  F  L  M  V  K  M :   S  M  I  S  G  E  T  *  N  A  M  V  K  Q  V  I  L  R  K  D  I  R  A  S  Q  A  G  I  P  H  :  G  H  L  L  V  S  G  F  Y  R  C  I  *  Q  G  R  L  K  H  L  I  A  E  G  M  W  Q  N  Y  A  *  F  F  F  L  S  *  W  H  L  L  L  G  S  H  V  W  M  T  T  G  I  I  G  K  T  C  S  L  E  E  *  *  :  A  F  S  L  L  H  S  V  T  C  S  S  S  L  L  H  T  I  L  K  :  D  G  D  H  M  H  I  S  G  L  W  R  R  F  V  V  A  D  H  T  S  T  L  L  M  E  D  *  R  R  N  I  L  R  Y  N  *  I  S  E  R  V  Q  L  P  I  H  L  R  M  W  S  M  A  E  C  E  T  *  E  T  A  Y  I  F  V  Q  S  I  L  I  G  T  V  C  Y  F  L  V  N  I  Y  V  C  F  C  *  V  F  *  L  *  G  T  I  *  L  L  K  L  F  *  S  V  A  S  S  F  F  C  V  C  V  I  C  C  I  I  S  L  L  V  D  N  F  V  I  I  S  F  I  P  *  A  K  D  H  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27930" stop="28040"/>
                    <exon start="28270" stop="28360"/>
                    <exon start="28453" stop="28641"/>
                    <exon start="28726" stop="28785"/>
                    <exon start="29180" stop="29349"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLLFAVLITAVITDAIKNGVGRPRPDFFWRCFPDGKDEYDQWGDVKCHGKASDIKEGHKSFPSGHTSWSFAGLGFLSLYLAGKIKAFDRRGHVAKLCIVLLPLLMASLVGVSRVDDYWHHWQDVFTGGMIGLFVATFCYLQFFPAPYHTEGWGPYAYFRAVEEVRSSRPHVHPTNGGLETEHPEVQLNQRTGTTPNPFEDVEYGRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="24952" e_stop="25716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="24952" e_stop="25716" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24952" stop="25716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24953" stop="25415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356036" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTCTTAGTTTTGGTGGGTTTTTGTTGTTTCTGTTTCTTTTGATGTGTGATGTACTTTTTTCTCTATTTTCTTGTTGAAAAATTGAGTCTTTAATCAGAAACTTGATGAAAAAATTGAATCTTTATAATTAGTCTAAATTGTTCTTATGAGTTATGATGATAGTATTTGTCATTTCTAGAAGGATTCTTTGCTGATAAGGTCTGTGAGTTTGGATTCTCCATTTTATTCTTTCTTGCCTCTTTGTTAAAAATTTTCCATTCGATGTTCGGTACCTAGGTTTGAGTTTAACTAATTCAAATTCGCATTGCTTAGGGCTCATTTTTGGGTTCTTTCCATATATCGGGCCGAAAAGAGCAGTCTTATCTACTGCACCACATTGTGCGGTGATTCTTTCTTGCCTTATGTACTGCCATTGCTAAAAGATTGAAACTTTAACTTGTGGGGGGACCCAATTGATTATTATTTTGCTTCTTTAGAAAATATTTGCTAAAGAGGGTACTGTTCAATGTTTGATTTAACACCATTAATTTCTTTTAAAAATTTCATTATTGTTCTTATGATGAGGCTGATAGTCAGTTTTGGTGTCATATATCTAGAAGGATTTTTTTCCCTTGTAGAAATGGTGGGGTCTTGGGTTTTTACTTTGATATGTGTTACCTGAGCCGACAGTCTTTCGGAAAACAACCTCTCTACTTCCACGAGATAGGAATAAGGTTGGTGTATATTCTACTTTCCCCCAACCCCACCTGTAGGATTTCACGGG</gDNA_template>
            <first_frame> L  S  *  F  W  W  V  F  V  V  S  V  S  F  D  V  *  C  T  F  F  S  I  F  L  L  K  N  *  V  F  N  Q  K  L  D  E  K  I  E  S  L  *  L  V  *  I  V  L  M  S  Y  D  D  S  I  C  H  F  *  K  D  S  L  L  I  R  S  V  S  L  D  S  P  F  Y  S  F  L  P  L  C  *  K  F  S  I  R  C  S  V  P  R  F  E  F  N  *  F  K  F  A  L  L  R  A  H  F  W  V  L  S  I  Y  R  A  E  K  S  S  L  I  Y  C  T  T  L  C  G  D  S  F  L  P  Y  V  L  P  L  L  K  D  *  N  F  N  L  W  G  D  P  I  D  Y  Y  F  A  S  L  E  N  I  C  *  R  G  Y  C  S  M  F  D  L  T  P  L  I  S  F  K  N  F  I  I  V  L  M  M  R  L  I  V  S  F  G  V  I  Y  L  E  G  F  F  S  L  V  E  M  V  G  S  W  V  F  T  L  I  C  V  T  *  A  D  S  L  S  E  N  N  L  S  T  S  T  R  *  E  *  G  W  C  I  F  Y  F  P  P  T  P  P  V  G  F  H  G </first_frame>
            <second_frame>  C  L  S  F  G  G  F  L  L  F  L  F  L  L  M  C  D  V  L  F  S  L  F  S  C  *  K  I  E  S  L  I  R  N  L  M  K  K  L  N  L  Y  N  *  S  K  L  F  L  *  V  M  M  I  V  F  V  I  S  R  R  I  L  C  *  *  G  L  *  V  W  I  L  H  F  I  L  S  C  L  F  V  K  N  F  P  F  D  V  R  Y  L  G  L  S  L  T  N  S  N  S  H  C  L  G  L  I  F  G  F  F  P  Y  I  G  P  K  R  A  V  L  S  T  A  P  H  C  A  V  I  L  S  C  L  M  Y  C  H  C  *  K  I  E  T  L  T  C  G  G  T  Q  L  I  I  I  L  L  L  *  K  I  F  A  K  E  G  T  V  Q  C  L  I  *  H  H  *  F  L  L  K  I  S  L  L  F  L  *  *  G  *  *  S  V  L  V  S  Y  I  *  K  D  F  F  P  L  *  K  W  W  G  L  G  F  L  L  *  Y  V  L  P  E  P  T  V  F  R  K  T  T  S  L  L  P  R  D  R  N  K  V  G  V  Y  S  T  F  P  Q  P  H  L  *  D  F  T   </second_frame>
            <third_frame>   V  L  V  L  V  G  F  C  C  F  C  F  F  *  C  V  M  Y  F  F  L  Y  F  L  V  E  K  L  S  L  *  S  E  T  *  *  K  N  *  I  F  I  I  S  L  N  C  S  Y  E  L  *  *  *  Y  L  S  F  L  E  G  F  F  A  D  K  V  C  E  F  G  F  S  I  L  F  F  L  A  S  L  L  K  I  F  H  S  M  F  G  T  *  V  *  V  *  L  I  Q  I  R  I  A  *  G  S  F  L  G  S  F  H  I  S  G  R  K  E  Q  S  Y  L  L  H  H  I  V  R  *  F  F  L  A  L  C  T  A  I  A  K  R  L  K  L  *  L  V  G  G  P  N  *  L  L  F  C  F  F  R  K  Y  L  L  K  R  V  L  F  N  V  *  F  N  T  I  N  F  F  *  K  F  H  Y  C  S  Y  D  E  A  D  S  Q  F  W  C  H  I  S  R  R  I  F  F  P  C  R  N  G  G  V  L  G  F  Y  F  D  M  C  Y  L  S  R  Q  S  F  G  K  Q  P  L  Y  F  H  E  I  G  I  R  L  V  Y  I  L  L  S  P  N  P  T  C  R  I  S  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25491" stop="25715"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFHYCSYDEADSQFWCHISRRIFFPCRNGGVLGFYFDMCYLSRQSFGKQPLYFHEIGIRLVYILLSPNPTCRISR</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25160" stop="25372"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWILHFILSCLFVKNFPFDVRYLGLSLTNSNSHCLGLIFGFFPYIGPKRAVLSTAPHCAVILSCLMYCHC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="24397" e_stop="24937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="24397" e_stop="24937" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24397" stop="24937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTATAATCGATATAAATTGTGATAGAATAATTAATTAATATTTTATTTATATTTAATTAAATTTTATTATCAATATCAAACTCTTAACGAAAAATCAAAAAAAAAGAAAGTCTTTGATCTTTGGAATCTTCTATCCATATTTTTACAAATTCAATTTTCAAAAATAAAAGATTGTGAACTTTCCATGTAACTCGGCACCATATTTCATATATTTGTTGAAATTTTTTTATTTTTATTTTTTGTAAGTCTTAAAAACTGTCTCCTAAAGAAGAAAAATCAATTATTCAAAATTCTTTTCATACTTTATTTTTTTTTCATCTTTGTCTTGTGTAGTTATGGTCTGCCATTGCTAAAGATTGAAGCTTTTATCTTCTTTTAGGGACCCATTTGAACTATTCTTTTGTTTCCCCAGTAAATATCTGCTATAAAAAGGTACCTTTCAGTGCTTAATCTTTGATTTGACACCATTAATTTCCTTTTAAAAAGTCAAATTTATTCTTATTGTGATGTATATTTGTCAGTCTTGAAAATCATATCTG</gDNA_template>
            <first_frame> I  Y  N  R  Y  K  L  *  *  N  N  *  L  I  F  Y  L  Y  L  I  K  F  Y  Y  Q  Y  Q  T  L  N  E  K  S  K  K  K  K  V  F  D  L  W  N  L  L  S  I  F  L  Q  I  Q  F  S  K  I  K  D  C  E  L  S  M  *  L  G  T  I  F  H  I  F  V  E  I  F  L  F  L  F  F  V  S  L  K  N  C  L  L  K  K  K  N  Q  L  F  K  I  L  F  I  L  Y  F  F  F  I  F  V  L  C  S  Y  G  L  P  L  L  K  I  E  A  F  I  F  F  *  G  P  I  *  T  I  L  L  F  P  Q  *  I  S  A  I  K  R  Y  L  S  V  L  N  L  *  F  D  T  I  N  F  L  L  K  S  Q  I  Y  S  Y  C  D  V  Y  L  S  V  L  K  I  I  S  </first_frame>
            <second_frame>  F  I  I  D  I  N  C  D  R  I  I  N  *  Y  F  I  Y  I  *  L  N  F  I  I  N  I  K  L  L  T  K  N  Q  K  K  R  K  S  L  I  F  G  I  F  Y  P  Y  F  Y  K  F  N  F  Q  K  *  K  I  V  N  F  P  C  N  S  A  P  Y  F  I  Y  L  L  K  F  F  Y  F  Y  F  L  *  V  L  K  T  V  S  *  R  R  K  I  N  Y  S  K  F  F  S  Y  F  I  F  F  S  S  L  S  C  V  V  M  V  C  H  C  *  R  L  K  L  L  S  S  F  R  D  P  F  E  L  F  F  C  F  P  S  K  Y  L  L  *  K  G  T  F  Q  C  L  I  F  D  L  T  P  L  I  S  F  *  K  V  K  F  I  L  I  V  M  Y  I  C  Q  S  *  K  S  Y  L </second_frame>
            <third_frame>   L  *  S  I  *  I  V  I  E  *  L  I  N  I  L  F  I  F  N  *  I  L  L  S  I  S  N  S  *  R  K  I  K  K  K  E  S  L  *  S  L  E  S  S  I  H  I  F  T  N  S  I  F  K  N  K  R  L  *  T  F  H  V  T  R  H  H  I  S  Y  I  C  *  N  F  F  I  F  I  F  C  K  S  *  K  L  S  P  K  E  E  K  S  I  I  Q  N  S  F  H  T  L  F  F  F  H  L  C  L  V  *  L  W  S  A  I  A  K  D  *  S  F  Y  L  L  L  G  T  H  L  N  Y  S  F  V  S  P  V  N  I  C  Y  K  K  V  P  F  S  A  *  S  L  I  *  H  H  *  F  P  F  K  K  S  N  L  F  L  L  *  C  I  F  V  S  L  E  N  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0122H05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="29523" PGL_stop="28770"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29523" e_stop="28770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="29523" e_stop="28770" e_length="754"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29523" stop="28770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326743" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTACACACACACAAAAAAAAGAACTTGCCACTGATTAAAACAATTTCAGTAATCAAATAGTTCCCTATAGCTAAAATACTTAACAAAAACAAACATAAATATTCACAAGAAAATAACAAACTGTGCCAATTAAAATACTTTGAACAAAAATATAAGCAGTTTCCTATGTCTCACATTCTGCCATACTCCACATCCTCAAATGGATTGGGAGTTGTACCCGTTCGCTGATTCAGTTGTACCTCAGGATGTTCCGTCTCTAATCCTCCATTAGTAGGGTGGACGTGTGGTCTGCTACTACGAACCTCCTCCACAGCCCGGAAATATGCATATGGTCCCCATCCTGAGAACAGCGAGAAAAATGAACATATCGGGTTAATTTCAGAGTTATGTCCACTGTAACAGTAAAGTTGCGGAGAGGAGATTTGGTGCAATGCCTTCTCCTAGATCATTAGCAAATCCATAGGAAATTAGAAGAAAATGCGATTGGAATATATGATCAGATCAGGCTTAGATGATTGGATCTTCTTTGTTTCAAGAAATGAGTTGAGAAAGGGCAGATGTATAGATCCTTTCAACGAAAGGGTGTAATTAACTTGGTATTAGTCTGGATACGGAATATTTTGAAGTACTAAGGATATAACAAAATCGAAAAGATTGGAGAAAGGTTTGTTTAAGCGCGAGGAATTACTACACAAAATGTAATTAAAGCGGGAGGAGATTAGTGAAGAACGTACCTTCAGTATGGTATGG</gDNA_template>
            <first_frame> Q  I  T  H  T  Q  K  K  E  L  A  T  D  *  N  N  F  S  N  Q  I  V  P  Y  S  *  N  T  *  Q  K  Q  T  *  I  F  T  R  K  *  Q  T  V  P  I  K  I  L  *  T  K  I  *  A  V  S  Y  V  S  H  S  A  I  L  H  I  L  K  W  I  G  S  C  T  R  S  L  I  Q  L  Y  L  R  M  F  R  L  *  S  S  I  S  R  V  D  V  W  S  A  T  T  N  L  L  H  S  P  E  I  C  I  W  S  P  S  *  E  Q  R  E  K  *  T  Y  R  V  N  F  R  V  M  S  T  V  T  V  K  L  R  R  G  D  L  V  Q  C  L  L  L  D  H  *  Q  I  H  R  K  L  E  E  N  A  I  G  I  Y  D  Q  I  R  L  R  *  L  D  L  L  C  F  K  K  *  V  E  K  G  Q  M  Y  R  S  F  Q  R  K  G  V  I  N  L  V  L  V  W  I  R  N  I  L  K  Y  *  G  Y  N  K  I  E  K  I  G  E  R  F  V  *  A  R  G  I  T  T  Q  N  V  I  K  A  G  G  D  *  *  R  T  Y  L  Q  Y  G  M  </first_frame>
            <second_frame>  K  L  H  T  H  K  K  K  N  L  P  L  I  K  T  I  S  V  I  K  *  F  P  I  A  K  I  L  N  K  N  K  H  K  Y  S  Q  E  N  N  K  L  C  Q  L  K  Y  F  E  Q  K  Y  K  Q  F  P  M  S  H  I  L  P  Y  S  T  S  S  N  G  L  G  V  V  P  V  R  *  F  S  C  T  S  G  C  S  V  S  N  P  P  L  V  G  W  T  C  G  L  L  L  R  T  S  S  T  A  R  K  Y  A  Y  G  P  H  P  E  N  S  E  K  N  E  H  I  G  L  I  S  E  L  C  P  L  *  Q  *  S  C  G  E  E  I  W  C  N  A  F  S  *  I  I  S  K  S  I  G  N  *  K  K  M  R  L  E  Y  M  I  R  S  G  L  D  D  W  I  F  F  V  S  R  N  E  L  R  K  G  R  C  I  D  P  F  N  E  R  V  *  L  T  W  Y  *  S  G  Y  G  I  F  *  S  T  K  D  I  T  K  S  K  R  L  E  K  G  L  F  K  R  E  E  L  L  H  K  M  *  L  K  R  E  E  I  S  E  E  R  T  F  S  M  V  W </second_frame>
            <third_frame>   N  Y  T  H  T  K  K  R  T  C  H  *  L  K  Q  F  Q  *  S  N  S  S  L  *  L  K  Y  L  T  K  T  N  I  N  I  H  K  K  I  T  N  C  A  N  *  N  T  L  N  K  N  I  S  S  F  L  C  L  T  F  C  H  T  P  H  P  Q  M  D  W  E  L  Y  P  F  A  D  S  V  V  P  Q  D  V  P  S  L  I  L  H  *  *  G  G  R  V  V  C  Y  Y  E  P  P  P  Q  P  G  N  M  H  M  V  P  I  L  R  T  A  R  K  M  N  I  S  G  *  F  Q  S  Y  V  H  C  N  S  K  V  A  E  R  R  F  G  A  M  P  S  P  R  S  L  A  N  P  *  E  I  R  R  K  C  D  W  N  I  *  S  D  Q  A  *  M  I  G  S  S  L  F  Q  E  M  S  *  E  R  A  D  V  *  I  L  S  T  K  G  C  N  *  L  G  I  S  L  D  T  E  Y  F  E  V  L  R  I  *  Q  N  R  K  D  W  R  K  V  C  L  S  A  R  N  Y  Y  T  K  C  N  *  S  G  R  R  L  V  K  N  V  P  S  V  W  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0122H05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="31433" PGL_stop="34842"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31433" e_stop="31556"/>
            <exon e_start="32932" e_stop="33155"/>
            <exon e_start="33273" e_stop="33360"/>
            <exon e_start="33466" e_stop="33575"/>
            <exon e_start="33663" e_stop="33756"/>
            <exon e_start="34491" e_stop="34679"/>
            <exon e_start="34783" e_stop="34842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.691" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.784" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.807" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.988" e_score="0.995"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31433" e_stop="31556" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="31557" i_stop="32931" i_length="1375"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32932" e_stop="33155" e_length="224"/>
          </exon>
          <intron i_serial="2" don_prob="0.691" acc_prob="0.040">
            <gDNA_intron_boundary i_start="33156" i_stop="33272" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33273" e_stop="33360" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.784">
            <gDNA_intron_boundary i_start="33361" i_stop="33465" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33466" e_stop="33575" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.957">
            <gDNA_intron_boundary i_start="33576" i_stop="33662" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33663" e_stop="33756" e_length="94"/>
          </exon>
          <intron i_serial="5" don_prob="0.807" acc_prob="0.924">
            <gDNA_intron_boundary i_start="33757" i_stop="34490" i_length="734"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="34491" e_stop="34679" e_length="189"/>
          </exon>
          <intron i_serial="6" don_prob="0.926" acc_prob="0.988">
            <gDNA_intron_boundary i_start="34680" i_stop="34782" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="0.950">
            <gDNA_exon_boundary e_start="34783" e_stop="34842" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31433" stop="31556"/>
              <exon start="32932" stop="33155"/>
              <exon start="33273" stop="33360"/>
              <exon start="33466" stop="33500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31436" stop="31556"/>
              <exon start="32932" stop="33155"/>
              <exon start="33273" stop="33338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31448" stop="31556"/>
              <exon start="32932" stop="33155"/>
              <exon start="33273" stop="33360"/>
              <exon start="33466" stop="33575"/>
              <exon start="33663" stop="33756"/>
              <exon start="34491" stop="34679"/>
              <exon start="34783" stop="34842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31467" stop="31556"/>
              <exon start="32932" stop="33155"/>
              <exon start="33273" stop="33360"/>
              <exon start="33466" stop="33551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTTTGACGCTTCGTTTGCTTTTGCTTTTCCTCTTCACCTTTATCTCTCCAATTATTTGAATTTACAGAAGCAAAACGAAAGCATTTTCTCCTCCGCATTCTCTTCTCCAGATCGTTTTCAG : TTGGTAAAATGCCAGAGATTCAGTTGGGTGCCCATACGTTCAGAAATCAGGGAGTGGAAGTAGCAAGATTTCACATGCATGACTGGTTTATTCTCTTCGTACTTGTGGTGATAGATATAATTTTAAATGTGATAGAACCATTTCACCGCTTTGTTGGATCTGACATGATGACAGATTTAAGTTACCCTTTGAAAGACAATACCATTCCCTTTTGGGCTGTTCCG : ATTATTGCTATAGTCTTACCTTTGCTAGTCATACTTGTGTTTTACTTCATCAGGAAGGATGTTTACGATGTGCATCAAGCTATATTAG : GATTGTTGTACTCTGTACTCATCAGCTCTGTTCTTACTGATGCAATAAAAGATGCCGTTGGTCGACCCCGTCCAGACTTCTTTTGGCGGTGTTTCCCTGATGGAAAAGGG : GTGTTTGATCCGATCACAAGCAATGTCAAATGTACTGGCTTGAAAAGTGTTATCAAAGAAGGACATAAGAGTTTCCCAAGCGGACATAGTTCTT : GGTCTTTTGCTGGTCTTGGCTTCCTCGCTTGGTACCTGTCAGGGAAAATCAAGGTGTTTGATCAAAGAGGCCATGTTGCTAAGCTCTGCCTTGTTTTCCTGCCCTTACTGATGGCGGCGTTAGTCGCAGTTTCCCGGGTTGATGATTACTGGCACCATTGGCAAGATGTATTTGCTGGAGGTCTCCTAG : GACTGACTGTGGCTTCAATTTGTTACTTACAATTCTTTCCCCCACCATATGATATAGATG</gDNA_template>
            <first_frame> H  F  *  R  F  V  C  F  C  F  S  S  S  P  L  S  L  Q  L  F  E  F  T  E  A  K  R  K  H  F  L  L  R  I  L  F  S  R  S  F  S   : V  G  K  M  P  E  I  Q  L  G  A  H  T  F  R  N  Q  G  V  E  V  A  R  F  H  M  H  D  W  F  I  L  F  V  L  V  V  I  D  I  I  L  N  V  I  E  P  F  H  R  F  V  G  S  D  M  M  T  D  L  S  Y  P  L  K  D  N  T  I  P  F  W  A  V  P  :  I  I  A  I  V  L  P  L  L  V  I  L  V  F  Y  F  I  R  K  D  V  Y  D  V  H  Q  A  I  L   : G  L  L  Y  S  V  L  I  S  S  V  L  T  D  A  I  K  D  A  V  G  R  P  R  P  D  F  F  W  R  C  F  P  D  G  K  G  :  V  F  D  P  I  T  S  N  V  K  C  T  G  L  K  S  V  I  K  E  G  H  K  S  F  P  S  G  H  S  S   : W  S  F  A  G  L  G  F  L  A  W  Y  L  S  G  K  I  K  V  F  D  Q  R  G  H  V  A  K  L  C  L  V  F  L  P  L  L  M  A  A  L  V  A  V  S  R  V  D  D  Y  W  H  H  W  Q  D  V  F  A  G  G  L  L   : G  L  T  V  A  S  I  C  Y  L  Q  F  F  P  P  P  Y  D  I  D  </first_frame>
            <second_frame>  I  F  D  A  S  F  A  F  A  F  P  L  H  L  Y  L  S  N  Y  L  N  L  Q  K  Q  N  E  S  I  F  S  S  A  F  S  S  P  D  R  F  Q  :  L  V  K  C  Q  R  F  S  W  V  P  I  R  S  E  I  R  E  W  K  *  Q  D  F  T  C  M  T  G  L  F  S  S  Y  L  W  *  *  I  *  F  *  M  *  *  N  H  F  T  A  L  L  D  L  T  *  *  Q  I  *  V  T  L  *  K  T  I  P  F  P  F  G  L  F  R :   L  L  L  *  S  Y  L  C  *  S  Y  L  C  F  T  S  S  G  R  M  F  T  M  C  I  K  L  Y  *  :  D  C  C  T  L  Y  S  S  A  L  F  L  L  M  Q  *  K  M  P  L  V  D  P  V  Q  T  S  F  G  G  V  S  L  M  E  K  G :   C  L  I  R  S  Q  A  M  S  N  V  L  A  *  K  V  L  S  K  K  D  I  R  V  S  Q  A  D  I  V  L  :  G  L  L  L  V  L  A  S  S  L  G  T  C  Q  G  K  S  R  C  L  I  K  E  A  M  L  L  S  S  A  L  F  S  C  P  Y  *  W  R  R  *  S  Q  F  P  G  L  M  I  T  G  T  I  G  K  M  Y  L  L  E  V  S  *  :  D  *  L  W  L  Q  F  V  T  Y  N  S  F  P  H  H  M  I  *  M </second_frame>
            <third_frame>   F  L  T  L  R  L  L  L  L  F  L  F  T  F  I  S  P  I  I  *  I  Y  R  S  K  T  K  A  F  S  P  P  H  S  L  L  Q  I  V  F  S :   W  *  N  A  R  D  S  V  G  C  P  Y  V  Q  K  S  G  S  G  S  S  K  I  S  H  A  *  L  V  Y  S  L  R  T  C  G  D  R  Y  N  F  K  C  D  R  T  I  S  P  L  C  W  I  *  H  D  D  R  F  K  L  P  F  E  R  Q  Y  H  S  L  L  G  C  S   : D  Y  C  Y  S  L  T  F  A  S  H  T  C  V  L  L  H  Q  E  G  C  L  R  C  A  S  S  Y  I  R :   I  V  V  L  C  T  H  Q  L  C  S  Y  *  C  N  K  R  C  R  W  S  T  P  S  R  L  L  L  A  V  F  P  *  W  K  R   : G  V  *  S  D  H  K  Q  C  Q  M  Y  W  L  E  K  C  Y  Q  R  R  T  *  E  F  P  K  R  T  *  F  L :   V  F  C  W  S  W  L  P  R  L  V  P  V  R  E  N  Q  G  V  *  S  K  R  P  C  C  *  A  L  P  C  F  P  A  L  T  D  G  G  V  S  R  S  F  P  G  *  *  L  L  A  P  L  A  R  C  I  C  W  R  S  P  R :   T  D  C  G  F  N  L  L  L  T  I  L  S  P  T  I  *  Y  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31442" stop="31556"/>
                    <exon start="32932" stop="33155"/>
                    <exon start="33273" stop="33360"/>
                    <exon start="33466" stop="33575"/>
                    <exon start="33663" stop="33756"/>
                    <exon start="34491" stop="34679"/>
                    <exon start="34783" stop="34841"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFVCFCFSSSPLSLQLFEFTEAKRKHFLLRILFSRSFSVGKMPEIQLGAHTFRNQGVEVARFHMHDWFILFVLVVIDIILNVIEPFHRFVGSDMMTDLSYPLKDNTIPFWAVPIIAIVLPLLVILVFYFIRKDVYDVHQAILGLLYSVLISSVLTDAIKDAVGRPRPDFFWRCFPDGKGVFDPITSNVKCTGLKSVIKEGHKSFPSGHSSWSFAGLGFLAWYLSGKIKVFDQRGHVAKLCLVFLPLLMAALVAVSRVDDYWHHWQDVFAGGLLGLTVASICYLQFFPPPYDID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="47504" PGL_stop="45507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47504" e_stop="47376"/>
            <exon e_start="47299" e_stop="47132"/>
            <exon e_start="46985" e_stop="46893"/>
            <exon e_start="45571" e_stop="45507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.816" acc_prob="0.970" e_score="0.977"/>
          <exon-intron don_prob="1.000" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="47504" e_stop="47376" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.816" acc_prob="0.970">
            <gDNA_intron_boundary i_start="47375" i_stop="47300" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47299" e_stop="47132" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.895">
            <gDNA_intron_boundary i_start="47131" i_stop="46986" i_length="146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46985" e_stop="46893" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46892" i_stop="45572" i_length="1321"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45571" e_stop="45507" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47504" stop="47376"/>
              <exon start="47299" stop="47132"/>
              <exon start="46985" stop="46893"/>
              <exon start="45571" stop="45507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCCTGTTTCGGCATAGAACTTGTTTCTAAAAGTGAAACCACATTGCGTTTTAGTGATATATACTCTGCAGAGTTCATTGATTGGGGGTTGGTACATCAAGCTGCCTTTTTGGGCCAGTCATTTGAG : ATGTACCGATTTACAATACGCGGAGTCCAGAAATCAAAGACACAACCTTCTGTTTTGGTTCCATCTTTTTATACTTTTGGACATAAGGATTCACAAACATGTCAGATGTGGGTTAATCAGATTAATGATCTTCTAAACAGGGACGCTGAGCGGCCAAAGAACCTTCTG : GTTTTTGTTAACCCAAAGAGTGGGAAAGGACTCGGATGTAAAGTTTGGGAAACAGTGGCTCCGACATTTTCTCAAGCGAAAGTGAAAATGAAG : GTTACTGTGACAGAAAGGGCAGGACAAGCTATTGACATGATGTCTTCCATTACAAGTAGAGAGCT</gDNA_template>
            <first_frame> S  S  C  F  G  I  E  L  V  S  K  S  E  T  T  L  R  F  S  D  I  Y  S  A  E  F  I  D  W  G  L  V  H  Q  A  A  F  L  G  Q  S  F  E  :  M  Y  R  F  T  I  R  G  V  Q  K  S  K  T  Q  P  S  V  L  V  P  S  F  Y  T  F  G  H  K  D  S  Q  T  C  Q  M  W  V  N  Q  I  N  D  L  L  N  R  D  A  E  R  P  K  N  L  L  :  V  F  V  N  P  K  S  G  K  G  L  G  C  K  V  W  E  T  V  A  P  T  F  S  Q  A  K  V  K  M  K  :  V  T  V  T  E  R  A  G  Q  A  I  D  M  M  S  S  I  T  S  R  E   </first_frame>
            <second_frame>  H  P  V  S  A  *  N  L  F  L  K  V  K  P  H  C  V  L  V  I  Y  T  L  Q  S  S  L  I  G  G  W  Y  I  K  L  P  F  W  A  S  H  L  R :   C  T  D  L  Q  Y  A  E  S  R  N  Q  R  H  N  L  L  F  W  F  H  L  F  I  L  L  D  I  R  I  H  K  H  V  R  C  G  L  I  R  L  M  I  F  *  T  G  T  L  S  G  Q  R  T  F  W :   F  L  L  T  Q  R  V  G  K  D  S  D  V  K  F  G  K  Q  W  L  R  H  F  L  K  R  K  *  K  *  R :   L  L  *  Q  K  G  Q  D  K  L  L  T  *  C  L  P  L  Q  V  E  S  </second_frame>
            <third_frame>   I  L  F  R  H  R  T  C  F  *  K  *  N  H  I  A  F  *  *  Y  I  L  C  R  V  H  *  L  G  V  G  T  S  S  C  L  F  G  P  V  I  *   : D  V  P  I  Y  N  T  R  S  P  E  I  K  D  T  T  F  C  F  G  S  I  F  L  Y  F  W  T  *  G  F  T  N  M  S  D  V  G  *  S  D  *  *  S  S  K  Q  G  R  *  A  A  K  E  P  S   : G  F  C  *  P  K  E  W  E  R  T  R  M  *  S  L  G  N  S  G  S  D  I  F  S  S  E  S  E  N  E   : G  Y  C  D  R  K  G  R  T  S  Y  *  H  D  V  F  H  Y  K  *  R  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47504" stop="47376"/>
                    <exon start="47299" stop="47132"/>
                    <exon start="46985" stop="46893"/>
                    <exon start="45571" stop="45509"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSCFGIELVSKSETTLRFSDIYSAEFIDWGLVHQAAFLGQSFEMYRFTIRGVQKSKTQPSVLVPSFYTFGHKDSQTCQMWVNQINDLLNRDAERPKNLLVFVNPKSGKGLGCKVWETVAPTFSQAKVKMKVTVTERAGQAIDMMSSITSRE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="56883" PGL_stop="59033"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56883" e_stop="57067"/>
            <exon e_start="58423" e_stop="59033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56883" e_stop="57067" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="57068" i_stop="58422" i_length="1355"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="58423" e_stop="59033" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56883" stop="57067"/>
              <exon start="58423" stop="59033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCGGTTAAACCTCAACGGGACTGAACACATACAATTTCATTATTCCCAAATTCTCTTTTCTTCTTCAAATTCATGCATCACAACAACAACGCACAGTGAGTTACAGATCGGATTAAGCGCTTACGGCGGAATACGGCGGTGCTGAACAACATTGCCGCTTGACGCTTTCATTCTCTCACAAG : GATGTCTGTTGATGGGGAGTTTGCCAATGGCTCATCCATCTTAACTGATGAAAAATTGCCCGAAGTGGCGAATCCAGCTATTGCATGTGAAATTGCATCTAGCAGTGGCACTGCTGTGTCTACAAAAGAAATTTTGAACTGCCCTGCTGATAAGGGTCAAATGGAACATAATCCAGCCTCAGAGATAACAGGCATTGAAGAAATGAGTGGCAAATCCGGTGGTTCAGAAAAAGGAAATGATGACGAAAAATTAAGAAACATAAGTGCAGAAGCTGCAAACACAGGATGCAGTGGAGAGAAGATACAATGTGACCAAAGTGTAAAGACTGAAAATGCAGACACTGACGGTGATCAAGGGGAACTGAGCATGGTCGCTGAAATCAAAGGGGTGAATGAAAGAGGAGGTGATTTTGATGGCGGTGTTAATTTGATATGTGAAGAAAGTGCAAATGCTGATAAGGTAGAGAGCAACGGCCAAAAGGTATGTAGCACAGAGATTAAAGCCGTTGAAGAAATTATGGGTGAATCTAATGGTTCATGGAAAAATGATAAGAGCGTGGATGCGGAAAAAGGGGATATCAACAATTCAATGGATATCGACCCTGTTACTG</gDNA_template>
            <first_frame> F  S  V  K  P  Q  R  D  *  T  H  T  I  S  L  F  P  N  S  L  F  F  F  K  F  M  H  H  N  N  N  A  Q  *  V  T  D  R  I  K  R  L  R  R  N  T  A  V  L  N  N  I  A  A  *  R  F  H  S  L  T  R :   M  S  V  D  G  E  F  A  N  G  S  S  I  L  T  D  E  K  L  P  E  V  A  N  P  A  I  A  C  E  I  A  S  S  S  G  T  A  V  S  T  K  E  I  L  N  C  P  A  D  K  G  Q  M  E  H  N  P  A  S  E  I  T  G  I  E  E  M  S  G  K  S  G  G  S  E  K  G  N  D  D  E  K  L  R  N  I  S  A  E  A  A  N  T  G  C  S  G  E  K  I  Q  C  D  Q  S  V  K  T  E  N  A  D  T  D  G  D  Q  G  E  L  S  M  V  A  E  I  K  G  V  N  E  R  G  G  D  F  D  G  G  V  N  L  I  C  E  E  S  A  N  A  D  K  V  E  S  N  G  Q  K  V  C  S  T  E  I  K  A  V  E  E  I  M  G  E  S  N  G  S  W  K  N  D  K  S  V  D  A  E  K  G  D  I  N  N  S  M  D  I  D  P  V  T  </first_frame>
            <second_frame>  F  R  L  N  L  N  G  T  E  H  I  Q  F  H  Y  S  Q  I  L  F  S  S  S  N  S  C  I  T  T  T  T  H  S  E  L  Q  I  G  L  S  A  Y  G  G  I  R  R  C  *  T  T  L  P  L  D  A  F  I  L  S  Q   : G  C  L  L  M  G  S  L  P  M  A  H  P  S  *  L  M  K  N  C  P  K  W  R  I  Q  L  L  H  V  K  L  H  L  A  V  A  L  L  C  L  Q  K  K  F  *  T  A  L  L  I  R  V  K  W  N  I  I  Q  P  Q  R  *  Q  A  L  K  K  *  V  A  N  P  V  V  Q  K  K  E  M  M  T  K  N  *  E  T  *  V  Q  K  L  Q  T  Q  D  A  V  E  R  R  Y  N  V  T  K  V  *  R  L  K  M  Q  T  L  T  V  I  K  G  N  *  A  W  S  L  K  S  K  G  *  M  K  E  E  V  I  L  M  A  V  L  I  *  Y  V  K  K  V  Q  M  L  I  R  *  R  A  T  A  K  R  Y  V  A  Q  R  L  K  P  L  K  K  L  W  V  N  L  M  V  H  G  K  M  I  R  A  W  M  R  K  K  G  I  S  T  I  Q  W  I  S  T  L  L  L </second_frame>
            <third_frame>   F  G  *  T  S  T  G  L  N  T  Y  N  F  I  I  P  K  F  S  F  L  L  Q  I  H  A  S  Q  Q  Q  R  T  V  S  Y  R  S  D  *  A  L  T  A  E  Y  G  G  A  E  Q  H  C  R  L  T  L  S  F  S  H  K  :  D  V  C  *  W  G  V  C  Q  W  L  I  H  L  N  *  *  K  I  A  R  S  G  E  S  S  Y  C  M  *  N  C  I  *  Q  W  H  C  C  V  Y  K  R  N  F  E  L  P  C  *  *  G  S  N  G  T  *  S  S  L  R  D  N  R  H  *  R  N  E  W  Q  I  R  W  F  R  K  R  K  *  *  R  K  I  K  K  H  K  C  R  S  C  K  H  R  M  Q  W  R  E  D  T  M  *  P  K  C  K  D  *  K  C  R  H  *  R  *  S  R  G  T  E  H  G  R  *  N  Q  R  G  E  *  K  R  R  *  F  *  W  R  C  *  F  D  M  *  R  K  C  K  C  *  *  G  R  E  Q  R  P  K  G  M  *  H  R  D  *  S  R  *  R  N  Y  G  *  I  *  W  F  M  E  K  *  *  E  R  G  C  G  K  R  G  Y  Q  Q  F  N  G  Y  R  P  C  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57048" stop="57067"/>
                    <exon start="58423" stop="59032"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFHSLTRMSVDGEFANGSSILTDEKLPEVANPAIACEIASSSGTAVSTKEILNCPADKGQMEHNPASEITGIEEMSGKSGGSEKGNDDEKLRNISAEAANTGCSGEKIQCDQSVKTENADTDGDQGELSMVAEIKGVNERGGDFDGGVNLICEESANADKVESNGQKVCSTEIKAVEEIMGESNGSWKNDKSVDAEKGDINNSMDIDPVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="68148" PGL_stop="68851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68148" e_stop="68565"/>
            <exon e_start="68652" e_stop="68851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68148" e_stop="68565" e_length="418"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68566" i_stop="68651" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="68652" e_stop="68851" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68148" stop="68565"/>
              <exon start="68652" stop="68851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGATGGTATCTAGTGTAGATAAAGTTAGTAGTATGTCACAACGTCCGGTCTCTCAGCTAGTAAAACAAGTAGTAGTTCTTAAGGATGAAATTAATGATGACAGTATTGTTGTGCCAGCAGCCGAAGGTATGAAACAGGTTGAGAAAACGAAAGAGGCTCGCAAACCAATTCAAAGAGAGAGTACGGTTGAGGAGCCAAAAGAGGCCGAGCCTGTGCAAACTGCTGAGGAGCTAGAGGCTGCTAGAAAGGAGGAGGAACTGAGAAAGCGTGAGGAAGAAGCAAGGTTGAAAGAGCAACGACGGTTGGAAGAGATTGCAAAGGCTAAGGAGGCATTAGAAAGGAAAAAACGCAATGCAGAGAAGGCCCAACTGAGAGCTGAAATGCGAGCCCAGAAGGAAGAAGAGCAGAGACTCAAG : GAGAAGGAGAAAAAACTGCGGAAAAGGGAAAGGAAGAAGGGCTCCGTAGGTGAAACACAGAGCGAAACTAATGATGGTGAAGCTGCTTTGATTTCTACCAGCCTAAGAGAAACTGTCAAGGAGCCCGATGCTACTGAGAATTCTCAAACACTCACTAGGAGAAAACAGAAATCGTCTCAATATACAAAACAGATGAAGAC</gDNA_template>
            <first_frame> *  D  G  I  *  C  R  *  S  *  *  Y  V  T  T  S  G  L  S  A  S  K  T  S  S  S  S  *  G  *  N  *  *  *  Q  Y  C  C  A  S  S  R  R  Y  E  T  G  *  E  N  E  R  G  S  Q  T  N  S  K  R  E  Y  G  *  G  A  K  R  G  R  A  C  A  N  C  *  G  A  R  G  C  *  K  G  G  G  T  E  K  A  *  G  R  S  K  V  E  R  A  T  T  V  G  R  D  C  K  G  *  G  G  I  R  K  E  K  T  Q  C  R  E  G  P  T  E  S  *  N  A  S  P  E  G  R  R  A  E  T  Q   : G  E  G  E  K  T  A  E  K  G  K  E  E  G  L  R  R  *  N  T  E  R  N  *  *  W  *  S  C  F  D  F  Y  Q  P  K  R  N  C  Q  G  A  R  C  Y  *  E  F  S  N  T  H  *  E  K  T  E  I  V  S  I  Y  K  T  D  E  D </first_frame>
            <second_frame>  R  M  V  S  S  V  D  K  V  S  S  M  S  Q  R  P  V  S  Q  L  V  K  Q  V  V  V  L  K  D  E  I  N  D  D  S  I  V  V  P  A  A  E  G  M  K  Q  V  E  K  T  K  E  A  R  K  P  I  Q  R  E  S  T  V  E  E  P  K  E  A  E  P  V  Q  T  A  E  E  L  E  A  A  R  K  E  E  E  L  R  K  R  E  E  E  A  R  L  K  E  Q  R  R  L  E  E  I  A  K  A  K  E  A  L  E  R  K  K  R  N  A  E  K  A  Q  L  R  A  E  M  R  A  Q  K  E  E  E  Q  R  L  K  :  E  K  E  K  K  L  R  K  R  E  R  K  K  G  S  V  G  E  T  Q  S  E  T  N  D  G  E  A  A  L  I  S  T  S  L  R  E  T  V  K  E  P  D  A  T  E  N  S  Q  T  L  T  R  R  K  Q  K  S  S  Q  Y  T  K  Q  M  K   </second_frame>
            <third_frame>   G  W  Y  L  V  *  I  K  L  V  V  C  H  N  V  R  S  L  S  *  *  N  K  *  *  F  L  R  M  K  L  M  M  T  V  L  L  C  Q  Q  P  K  V  *  N  R  L  R  K  R  K  R  L  A  N  Q  F  K  E  R  V  R  L  R  S  Q  K  R  P  S  L  C  K  L  L  R  S  *  R  L  L  E  R  R  R  N  *  E  S  V  R  K  K  Q  G  *  K  S  N  D  G  W  K  R  L  Q  R  L  R  R  H  *  K  G  K  N  A  M  Q  R  R  P  N  *  E  L  K  C  E  P  R  R  K  K  S  R  D  S  R :   R  R  R  K  N  C  G  K  G  K  G  R  R  A  P  *  V  K  H  R  A  K  L  M  M  V  K  L  L  *  F  L  P  A  *  E  K  L  S  R  S  P  M  L  L  R  I  L  K  H  S  L  G  E  N  R  N  R  L  N  I  Q  N  R  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68149" stop="68565"/>
                    <exon start="68652" stop="68849"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMVSSVDKVSSMSQRPVSQLVKQVVVLKDEINDDSIVVPAAEGMKQVEKTKEARKPIQRESTVEEPKEAEPVQTAEELEAARKEEELRKREEEARLKEQRRLEEIAKAKEALERKKRNAEKAQLRAEMRAQKEEEQRLKEKEKKLRKRERKKGSVGETQSETNDGEAALISTSLRETVKEPDATENSQTLTRRKQKSSQYTKQMK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="69252" PGL_stop="68682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69252" e_stop="68682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="69252" e_stop="68682" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69252" stop="68682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTATTAAGTATCGGGGTTTTTTTTTTTTTGTAGTAAAGTAATAAATACCAATATTATGTTCTATGTTGCTTAAAAACATCTGCTCACTCTACTAAGAACCAAATGTTCAAATCTATGATGAACCAACATATATTATGTATATATATAGAACGAAAGAATGGTCTCTCTCCTCACTTCATCTGTAAGATATAAAACAAACCTGTAGTCTTTACTCCAAGCCAGATCTAACAAGGTAATGACCCTAATATGCAGGGTTTTTTGGTGGCTTCAGATGGGAGAAGAAGCCAATATTTCCTAGGAAGAACAGAGCAATGACGACTGCGCAAGAAAGAAATAACCAAAGCCACTGCTGCCATTTCCTTTTACCTTTGATACGAGGAGGGGGAGGAATGGATTTAGTCTTCATCTGTTTTGTATATTGAGACGATTTCTGTTTTCTCCTAGTGAGTGTTTGAGAATTCTCAGTAGCATCGGGCTCCTTGACAGTTTCTCTTAGGCTGGTAGAAATCAAAGCAGCTTCACCATCATTAGTTTCGCTCTGTGTTTCACCTACGGAGCCCTTCTTCCT</gDNA_template>
            <first_frame> G  L  L  S  I  G  V  F  F  F  L  *  *  S  N  K  Y  Q  Y  Y  V  L  C  C  L  K  T  S  A  H  S  T  K  N  Q  M  F  K  S  M  M  N  Q  H  I  L  C  I  Y  I  E  R  K  N  G  L  S  P  H  F  I  C  K  I  *  N  K  P  V  V  F  T  P  S  Q  I  *  Q  G  N  D  P  N  M  Q  G  F  L  V  A  S  D  G  R  R  S  Q  Y  F  L  G  R  T  E  Q  *  R  L  R  K  K  E  I  T  K  A  T  A  A  I  S  F  Y  L  *  Y  E  E  G  E  E  W  I  *  S  S  S  V  L  Y  I  E  T  I  S  V  F  S  *  *  V  F  E  N  S  Q  *  H  R  A  P  *  Q  F  L  L  G  W  *  K  S  K  Q  L  H  H  H  *  F  R  S  V  F  H  L  R  S  P  S  S  </first_frame>
            <second_frame>  D  Y  *  V  S  G  F  F  F  F  C  S  K  V  I  N  T  N  I  M  F  Y  V  A  *  K  H  L  L  T  L  L  R  T  K  C  S  N  L  *  *  T  N  I  Y  Y  V  Y  I  *  N  E  R  M  V  S  L  L  T  S  S  V  R  Y  K  T  N  L  *  S  L  L  Q  A  R  S  N  K  V  M  T  L  I  C  R  V  F  W  W  L  Q  M  G  E  E  A  N  I  S  *  E  E  Q  S  N  D  D  C  A  R  K  K  *  P  K  P  L  L  P  F  P  F  T  F  D  T  R  R  G  R  N  G  F  S  L  H  L  F  C  I  L  R  R  F  L  F  S  P  S  E  C  L  R  I  L  S  S  I  G  L  L  D  S  F  S  *  A  G  R  N  Q  S  S  F  T  I  I  S  F  A  L  C  F  T  Y  G  A  L  L  P </second_frame>
            <third_frame>   I  I  K  Y  R  G  F  F  F  F  V  V  K  *  *  I  P  I  L  C  S  M  L  L  K  N  I  C  S  L  Y  *  E  P  N  V  Q  I  Y  D  E  P  T  Y  I  M  Y  I  Y  R  T  K  E  W  S  L  S  S  L  H  L  *  D  I  K  Q  T  C  S  L  Y  S  K  P  D  L  T  R  *  *  P  *  Y  A  G  F  F  G  G  F  R  W  E  K  K  P  I  F  P  R  K  N  R  A  M  T  T  A  Q  E  R  N  N  Q  S  H  C  C  H  F  L  L  P  L  I  R  G  G  G  G  M  D  L  V  F  I  C  F  V  Y  *  D  D  F  C  F  L  L  V  S  V  *  E  F  S  V  A  S  G  S  L  T  V  S  L  R  L  V  E  I  K  A  A  S  P  S  L  V  S  L  C  V  S  P  T  E  P  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0122H05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="68963" PGL_stop="69230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68963" e_stop="69230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="68963" e_stop="69230" e_length="268"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68963" stop="69230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCTTCTTCTCCCATCTGAAGCCACCAAAAAACCCTGCATATTAGGGTCATTACCTTGTTAGATCTGGCTTGGAGTAAAGACTACAGGTTTGTTTTATATCTTACAGATGAAGTGAGGAGAGAGACCATTCTTTCGTTCTATATATATACATAATATATGTTGGTTCATCATAGATTTGAACATTTGGTTCTTAGTAGAGTGAGCAGATGTTTTTAAGCAACATAGAACATAATATTGGTATTTATTACTTTACTACAAAAAAAAAA</gDNA_template>
            <first_frame> W  L  L  L  P  S  E  A  T  K  K  P  C  I  L  G  S  L  P  C  *  I  W  L  G  V  K  T  T  G  L  F  Y  I  L  Q  M  K  *  G  E  R  P  F  F  R  S  I  Y  I  H  N  I  C  W  F  I  I  D  L  N  I  W  F  L  V  E  *  A  D  V  F  K  Q  H  R  T  *  Y  W  Y  L  L  L  Y  Y  K  K  K  </first_frame>
            <second_frame>  G  F  F  S  H  L  K  P  P  K  N  P  A  Y  *  G  H  Y  L  V  R  S  G  L  E  *  R  L  Q  V  C  F  I  S  Y  R  *  S  E  E  R  D  H  S  F  V  L  Y  I  Y  I  I  Y  V  G  S  S  *  I  *  T  F  G  S  *  *  S  E  Q  M  F  L  S  N  I  E  H  N  I  G  I  Y  Y  F  T  T  K  K  K </second_frame>
            <third_frame>   A  S  S  P  I  *  S  H  Q  K  T  L  H  I  R  V  I  T  L  L  D  L  A  W  S  K  D  Y  R  F  V  L  Y  L  T  D  E  V  R  R  E  T  I  L  S  F  Y  I  Y  T  *  Y  M  L  V  H  H  R  F  E  H  L  V  L  S  R  V  S  R  C  F  *  A  T  *  N  I  I  L  V  F  I  T  L  L  Q  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0122H05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="71143" PGL_stop="80644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71143" e_stop="71221"/>
            <exon e_start="71817" e_stop="72077"/>
            <exon e_start="78238" e_stop="78256"/>
            <exon e_start="78367" e_stop="78586"/>
            <exon e_start="78669" e_stop="78850"/>
            <exon e_start="79268" e_stop="79557"/>
            <exon e_start="79638" e_stop="79767"/>
            <exon e_start="80226" e_stop="80644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.522" acc_prob="0.687" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.650" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.978"/>
          <exon-intron don_prob="0.988" acc_prob="0.624" e_score="1.000"/>
          <exon-intron don_prob="0.635" acc_prob="0.540" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71143" e_stop="71221" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.844">
            <gDNA_intron_boundary i_start="71222" i_stop="71816" i_length="595"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71817" e_stop="72077" e_length="261"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72078" i_stop="78237" i_length="6160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78238" e_stop="78256" e_length="19"/>
          </exon>
          <intron i_serial="3" don_prob="0.522" acc_prob="0.687">
            <gDNA_intron_boundary i_start="78257" i_stop="78366" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78367" e_stop="78586" e_length="220"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.650">
            <gDNA_intron_boundary i_start="78587" i_stop="78668" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="78669" e_stop="78850" e_length="182"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="78851" i_stop="79267" i_length="417"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79268" e_stop="79557" e_length="290"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.624">
            <gDNA_intron_boundary i_start="79558" i_stop="79637" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79638" e_stop="79767" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.635" acc_prob="0.540">
            <gDNA_intron_boundary i_start="79768" i_stop="80225" i_length="458"/>
          </intron>
          <exon e_serial="8" e_score="0.957">
            <gDNA_exon_boundary e_start="80226" e_stop="80644" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71143" stop="71221"/>
              <exon start="71817" stop="72077"/>
              <exon start="78238" stop="78256"/>
              <exon start="78367" stop="78586"/>
              <exon start="78669" stop="78850"/>
              <exon start="79268" stop="79302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71146" stop="71221"/>
              <exon start="71817" stop="72077"/>
              <exon start="78238" stop="78256"/>
              <exon start="78367" stop="78586"/>
              <exon start="78669" stop="78691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71146" stop="71221"/>
              <exon start="71817" stop="72077"/>
              <exon start="78238" stop="78256"/>
              <exon start="78367" stop="78400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79292" stop="79557"/>
              <exon start="79638" stop="79767"/>
              <exon start="80226" stop="80291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79455" stop="79557"/>
              <exon start="79638" stop="79767"/>
              <exon start="80226" stop="80644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424026" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAAAATTAGTTCTTCAAATGATGATTCTAGACTTAGAGAATTGGGTTACAAGCAAGAACTCTATCGTGGTCTTAC : GCTCATTTCAAACTTTTCTTTGACATTTTGCATTGTATCAGTTCTTACTGGTATATCAACATTGTATAACCAGGCCCTAACTTTTGGTGGGCCTGTTACTATTGTTTGTGGATGGCCCATAATTGGATTAATGACACTTATTGTGGGCCTTTCTATGGCTGAAATATGTTCTGCTTATCCAACTTCTGCTGGGCTTTATTATTGGAGTGCTAAATTGGCTGGAAACAAGATTGGCCCATTTGCTGCTTGGATTACTGGCTG : GTTCAACATTGTTGGTCAG : TGGGCTGTCACAACAAGTGTAGATTATTCATTGGCTCAGTTAGTTCAGGTAATAATTCTTCTTAGCACTGGTGGATTAAATGGTGGCGGATATCAGGCCTCCAAATATGTGGTTATCGCCCTTCACGCTGGAATTCTGCTTTTACATGCTTTATTAAACAGTCTTCCGATTTCATGGCTGTCCTTCATTGGACAACTAGCCGCTGCATGGAATGTTTTAG : GTGTCTTTCTTCTTATGATTTTGATCCCAATGGTTGCAACAGAAAGAGCTAGCGCTAAATTTGTGTTTACTAACTTCAACACTGTCAATGAGGATGGAATCAACAATAAACTCTACATCTTCGTCCTCGGACTTCTCATGAGCCAGTATACATTGACAGGTTATGACGCTTCTGCCCATATG : ACGGAAGAAACCAAAGATGCAGATAAGAATGGACCAAAAGGAATTGTAAGTGCTATTGGCATATCAATTCTTGCTGGCTGGGCTTACATACTTGGTATAACCTTTGCAGTTACAGATATCCCACATCTGTTAGATAAAAACAATGATTCTGGTGGCTATGCTATTGCTCAAATCTTTTATGACGTATTCAAGAGTAGATATGGCAGTGGTGTTGGTGGAATTGTTTGCTTAAGTGTTATTGCTGTTGCCGTATTCTTTTGTGGTATGAGCTCATTAACTAGCAACTCGAG : GATGGCTTATGCATTCTCCAGAGATGGAGCAATGCCATATTCGTCGTTCTGGCATAAAGTAAACAAGCATGAGGTTCCGCTAAATGCAGTCTGGACGTCAGCTTTTATAGCATTTTGCATGGCATTGACG : TCTCTTGGAAGCTTGGTAGCATTTCAAGCCATGACATCTATAGCGACAATCGGGCTTTACATTGCTTATGCCTTGCCAATCCTGTTTCGAGTGACTCTAGCTCGAAAATCCTTCACTCCAGGTCCTTTCAACTTGGGAAGCTACGGGATCATTGTAGGTTGGGTTGCAGTATTTTGGGTCGCGCTCATCTCTGTGCTCTTCTCTTTGCCTGTTGCCTACCCTATTACAGATCAAACTCTCAACTATACTCCAGTCGCGGTTGTTGGCCTTGTCATTCTTGTTGTTTCTTCATGGATCTTCAGTGCTAGGCATTGGTTTAAAGGTCCTATTACCAATATAGGCAACTCTAGTGAAGAAGCATAAGTAGAGAAAAATTCTTTTGTAATTAGACAACGCTGAATTGCTGATAGCGGATTTAA</gDNA_template>
            <first_frame> K  T  K  L  V  L  Q  M  M  I  L  D  L  E  N  W  V  T  S  K  N  S  I  V  V  L   : R  S  F  Q  T  F  L  *  H  F  A  L  Y  Q  F  L  L  V  Y  Q  H  C  I  T  R  P  *  L  L  V  G  L  L  L  L  F  V  D  G  P  *  L  D  *  *  H  L  L  W  A  F  L  W  L  K  Y  V  L  L  I  Q  L  L  L  G  F  I  I  G  V  L  N  W  L  E  T  R  L  A  H  L  L  L  G  L  L  A   : G  S  T  L  L  V  S :   G  L  S  Q  Q  V  *  I  I  H  W  L  S  *  F  R  *  *  F  F  L  A  L  V  D  *  M  V  A  D  I  R  P  P  N  M  W  L  S  P  F  T  L  E  F  C  F  Y  M  L  Y  *  T  V  F  R  F  H  G  C  P  S  L  D  N  *  P  L  H  G  M  F  *  :  V  S  F  F  L  *  F  *  S  Q  W  L  Q  Q  K  E  L  A  L  N  L  C  L  L  T  S  T  L  S  M  R  M  E  S  T  I  N  S  T  S  S  S  S  D  F  S  *  A  S  I  H  *  Q  V  M  T  L  L  P  I  * :   R  K  K  P  K  M  Q  I  R  M  D  Q  K  E  L  *  V  L  L  A  Y  Q  F  L  L  A  G  L  T  Y  L  V  *  P  L  Q  L  Q  I  S  H  I  C  *  I  K  T  M  I  L  V  A  M  L  L  L  K  S  F  M  T  Y  S  R  V  D  M  A  V  V  L  V  E  L  F  A  *  V  L  L  L  L  P  Y  S  F  V  V  *  A  H  *  L  A  T  R   : G  W  L  M  H  S  P  E  M  E  Q  C  H  I  R  R  S  G  I  K  *  T  S  M  R  F  R  *  M  Q  S  G  R  Q  L  L  *  H  F  A  W  H  *  R :   L  L  E  A  W  *  H  F  K  P  *  H  L  *  R  Q  S  G  F  T  L  L  M  P  C  Q  S  C  F  E  *  L  *  L  E  N  P  S  L  Q  V  L  S  T  W  E  A  T  G  S  L  *  V  G  L  Q  Y  F  G  S  R  S  S  L  C  S  S  L  C  L  L  P  T  L  L  Q  I  K  L  S  T  I  L  Q  S  R  L  L  A  L  S  F  L  L  F  L  H  G  S  S  V  L  G  I  G  L  K  V  L  L  P  I  *  A  T  L  V  K  K  H  K  *  R  K  I  L  L  *  L  D  N  A  E  L  L  I  A  D  L  </first_frame>
            <second_frame>  K  Q  N  *  F  F  K  *  *  F  *  T  *  R  I  G  L  Q  A  R  T  L  S  W  S  Y  :  A  H  F  K  L  F  F  D  I  L  H  C  I  S  S  Y  W  Y  I  N  I  V  *  P  G  P  N  F  W  W  A  C  Y  Y  C  L  W  M  A  H  N  W  I  N  D  T  Y  C  G  P  F  Y  G  *  N  M  F  C  L  S  N  F  C  W  A  L  L  L  E  C  *  I  G  W  K  Q  D  W  P  I  C  C  L  D  Y  W  L  :  V  Q  H  C  W  S   : V  G  C  H  N  K  C  R  L  F  I  G  S  V  S  S  G  N  N  S  S  *  H  W  W  I  K  W  W  R  I  S  G  L  Q  I  C  G  Y  R  P  S  R  W  N  S  A  F  T  C  F  I  K  Q  S  S  D  F  M  A  V  L  H  W  T  T  S  R  C  M  E  C  F  R :   C  L  S  S  Y  D  F  D  P  N  G  C  N  R  K  S  *  R  *  I  C  V  Y  *  L  Q  H  C  Q  *  G  W  N  Q  Q  *  T  L  H  L  R  P  R  T  S  H  E  P  V  Y  I  D  R  L  *  R  F  C  P  Y   : D  G  R  N  Q  R  C  R  *  E  W  T  K  R  N  C  K  C  Y  W  H  I  N  S  C  W  L  G  L  H  T  W  Y  N  L  C  S  Y  R  Y  P  T  S  V  R  *  K  Q  *  F  W  W  L  C  Y  C  S  N  L  L  *  R  I  Q  E  *  I  W  Q  W  C  W  W  N  C  L  L  K  C  Y  C  C  C  R  I  L  L  W  Y  E  L  I  N  *  Q  L  E  :  D  G  L  C  I  L  Q  R  W  S  N  A  I  F  V  V  L  A  *  S  K  Q  A  *  G  S  A  K  C  S  L  D  V  S  F  Y  S  I  L  H  G  I  D   : V  S  W  K  L  G  S  I  S  S  H  D  I  Y  S  D  N  R  A  L  H  C  L  C  L  A  N  P  V  S  S  D  S  S  S  K  I  L  H  S  R  S  F  Q  L  G  K  L  R  D  H  C  R  L  G  C  S  I  L  G  R  A  H  L  C  A  L  L  F  A  C  C  L  P  Y  Y  R  S  N  S  Q  L  Y  S  S  R  G  C  W  P  C  H  S  C  C  F  F  M  D  L  Q  C  *  A  L  V  *  R  S  Y  Y  Q  Y  R  Q  L  *  *  R  S  I  S  R  E  K  F  F  C  N  *  T  T  L  N  C  *  *  R  I  * </second_frame>
            <third_frame>   N  K  I  S  S  S  N  D  D  S  R  L  R  E  L  G  Y  K  Q  E  L  Y  R  G  L  T :   L  I  S  N  F  S  L  T  F  C  I  V  S  V  L  T  G  I  S  T  L  Y  N  Q  A  L  T  F  G  G  P  V  T  I  V  C  G  W  P  I  I  G  L  M  T  L  I  V  G  L  S  M  A  E  I  C  S  A  Y  P  T  S  A  G  L  Y  Y  W  S  A  K  L  A  G  N  K  I  G  P  F  A  A  W  I  T  G  W :   F  N  I  V  G  Q  :  W  A  V  T  T  S  V  D  Y  S  L  A  Q  L  V  Q  V  I  I  L  L  S  T  G  G  L  N  G  G  G  Y  Q  A  S  K  Y  V  V  I  A  L  H  A  G  I  L  L  L  H  A  L  L  N  S  L  P  I  S  W  L  S  F  I  G  Q  L  A  A  A  W  N  V  L   : G  V  F  L  L  M  I  L  I  P  M  V  A  T  E  R  A  S  A  K  F  V  F  T  N  F  N  T  V  N  E  D  G  I  N  N  K  L  Y  I  F  V  L  G  L  L  M  S  Q  Y  T  L  T  G  Y  D  A  S  A  H  M  :  T  E  E  T  K  D  A  D  K  N  G  P  K  G  I  V  S  A  I  G  I  S  I  L  A  G  W  A  Y  I  L  G  I  T  F  A  V  T  D  I  P  H  L  L  D  K  N  N  D  S  G  G  Y  A  I  A  Q  I  F  Y  D  V  F  K  S  R  Y  G  S  G  V  G  G  I  V  C  L  S  V  I  A  V  A  V  F  F  C  G  M  S  S  L  T  S  N  S  R :   M  A  Y  A  F  S  R  D  G  A  M  P  Y  S  S  F  W  H  K  V  N  K  H  E  V  P  L  N  A  V  W  T  S  A  F  I  A  F  C  M  A  L  T  :  S  L  G  S  L  V  A  F  Q  A  M  T  S  I  A  T  I  G  L  Y  I  A  Y  A  L  P  I  L  F  R  V  T  L  A  R  K  S  F  T  P  G  P  F  N  L  G  S  Y  G  I  I  V  G  W  V  A  V  F  W  V  A  L  I  S  V  L  F  S  L  P  V  A  Y  P  I  T  D  Q  T  L  N  Y  T  P  V  A  V  V  G  L  V  I  L  V  V  S  S  W  I  F  S  A  R  H  W  F  K  G  P  I  T  N  I  G  N  S  S  E  E  A  *  V  E  K  N  S  F  V  I  R  Q  R  *  I  A  D  S  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71145" stop="71221"/>
                    <exon start="71817" stop="72077"/>
                    <exon start="78238" stop="78256"/>
                    <exon start="78367" stop="78586"/>
                    <exon start="78669" stop="78850"/>
                    <exon start="79268" stop="79557"/>
                    <exon start="79638" stop="79767"/>
                    <exon start="80226" stop="80588"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1539</number_coding_nucleotides>
                  <number_encoded_amino_acids>513</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKISSSNDDSRLRELGYKQELYRGLTLISNFSLTFCIVSVLTGISTLYNQALTFGGPVTIVCGWPIIGLMTLIVGLSMAEICSAYPTSAGLYYWSAKLAGNKIGPFAAWITGWFNIVGQWAVTTSVDYSLAQLVQVIILLSTGGLNGGGYQASKYVVIALHAGILLLHALLNSLPISWLSFIGQLAAAWNVLGVFLLMILIPMVATERASAKFVFTNFNTVNEDGINNKLYIFVLGLLMSQYTLTGYDASAHMTEETKDADKNGPKGIVSAIGISILAGWAYILGITFAVTDIPHLLDKNNDSGGYAIAQIFYDVFKSRYGSGVGGIVCLSVIAVAVFFCGMSSLTSNSRMAYAFSRDGAMPYSSFWHKVNKHEVPLNAVWTSAFIAFCMALTSLGSLVAFQAMTSIATIGLYIAYALPILFRVTLARKSFTPGPFNLGSYGIIVGWVAVFWVALISVLFSLPVAYPITDQTLNYTPVAVVGLVILVVSSWIFSARHWFKGPITNIGNSSEEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78112" e_stop="78586"/>
            <exon e_start="78669" e_stop="78850"/>
            <exon e_start="79268" e_stop="79557"/>
            <exon e_start="79638" e_stop="79767"/>
            <exon e_start="80226" e_stop="80644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.650" e_score="0.954"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.989"/>
          <exon-intron don_prob="0.988" acc_prob="0.624" e_score="1.000"/>
          <exon-intron don_prob="0.635" acc_prob="0.540" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="78112" e_stop="78586" e_length="475"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.650">
            <gDNA_intron_boundary i_start="78587" i_stop="78668" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="78669" e_stop="78850" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="78851" i_stop="79267" i_length="417"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79268" e_stop="79557" e_length="290"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.624">
            <gDNA_intron_boundary i_start="79558" i_stop="79637" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79638" e_stop="79767" e_length="130"/>
          </exon>
          <intron i_serial="4" don_prob="0.635" acc_prob="0.540">
            <gDNA_intron_boundary i_start="79768" i_stop="80225" i_length="458"/>
          </intron>
          <exon e_serial="5" e_score="0.957">
            <gDNA_exon_boundary e_start="80226" e_stop="80644" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78112" stop="78586"/>
              <exon start="78669" stop="78808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78117" stop="78586"/>
              <exon start="78669" stop="78850"/>
              <exon start="79268" stop="79347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79292" stop="79557"/>
              <exon start="79638" stop="79767"/>
              <exon start="80226" stop="80291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79455" stop="79557"/>
              <exon start="79638" stop="79767"/>
              <exon start="80226" stop="80644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424026" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTAGCTCATGCCTCCGTCAATTGTGCAACATTCAGCTGTCATAAGTTACTTTTTGACAAAACTGATGGTTTCTACATTCATATTGCTTCTTTCTCAGTAAAATTTCTTTCCTTTTTGTATTGCAGGTTCAACATTGTTGGTCAGGTATCGTGAAGAATTACTCGTATTACCATTCACAGTTTTAGTGTCTAATTGGGCTTAGCTGATTCACCATATAAAACAACTCTAATCCAAAACGGAAAATCTGATTGCAGTGGGCTGTCACAACAAGTGTAGATTATTCATTGGCTCAGTTAGTTCAGGTAATAATTCTTCTTAGCACTGGTGGATTAAATGGTGGCGGATATCAGGCCTCCAAATATGTGGTTATCGCCCTTCACGCTGGAATTCTGCTTTTACATGCTTTATTAAACAGTCTTCCGATTTCATGGCTGTCCTTCATTGGACAACTAGCCGCTGCATGGAATGTTTTAG : GTGTCTTTCTTCTTATGATTTTGATCCCAATGGTTGCAACAGAAAGAGCTAGCGCTAAATTTGTGTTTACTAACTTCAACACTGTCAATGAGGATGGAATCAACAATAAACTCTACATCTTCGTCCTCGGACTTCTCATGAGCCAGTATACATTGACAGGTTATGACGCTTCTGCCCATATG : ACGGAAGAAACCAAAGATGCAGATAAGAATGGACCAAAAGGAATTGTAAGTGCTATTGGCATATCAATTCTTGCTGGCTGGGCTTACATACTTGGTATAACCTTTGCAGTTACAGATATCCCACATCTGTTAGATAAAAACAATGATTCTGGTGGCTATGCTATTGCTCAAATCTTTTATGACGTATTCAAGAGTAGATATGGCAGTGGTGTTGGTGGAATTGTTTGCTTAAGTGTTATTGCTGTTGCCGTATTCTTTTGTGGTATGAGCTCATTAACTAGCAACTCGAG : GATGGCTTATGCATTCTCCAGAGATGGAGCAATGCCATATTCGTCGTTCTGGCATAAAGTAAACAAGCATGAGGTTCCGCTAAATGCAGTCTGGACGTCAGCTTTTATAGCATTTTGCATGGCATTGACG : TCTCTTGGAAGCTTGGTAGCATTTCAAGCCATGACATCTATAGCGACAATCGGGCTTTACATTGCTTATGCCTTGCCAATCCTGTTTCGAGTGACTCTAGCTCGAAAATCCTTCACTCCAGGTCCTTTCAACTTGGGAAGCTACGGGATCATTGTAGGTTGGGTTGCAGTATTTTGGGTCGCGCTCATCTCTGTGCTCTTCTCTTTGCCTGTTGCCTACCCTATTACAGATCAAACTCTCAACTATACTCCAGTCGCGGTTGTTGGCCTTGTCATTCTTGTTGTTTCTTCATGGATCTTCAGTGCTAGGCATTGGTTTAAAGGTCCTATTACCAATATAGGCAACTCTAGTGAAGAAGCATAAGTAGAGAAAAATTCTTTTGTAATTAGACAACGCTGAATTGCTGATAGCGGATTTAA</gDNA_template>
            <first_frame> G  S  S  C  L  R  Q  L  C  N  I  Q  L  S  *  V  T  F  *  Q  N  *  W  F  L  H  S  Y  C  F  F  L  S  K  I  S  F  L  F  V  L  Q  V  Q  H  C  W  S  G  I  V  K  N  Y  S  Y  Y  H  S  Q  F  *  C  L  I  G  L  S  *  F  T  I  *  N  N  S  N  P  K  R  K  I  *  L  Q  W  A  V  T  T  S  V  D  Y  S  L  A  Q  L  V  Q  V  I  I  L  L  S  T  G  G  L  N  G  G  G  Y  Q  A  S  K  Y  V  V  I  A  L  H  A  G  I  L  L  L  H  A  L  L  N  S  L  P  I  S  W  L  S  F  I  G  Q  L  A  A  A  W  N  V  L   : G  V  F  L  L  M  I  L  I  P  M  V  A  T  E  R  A  S  A  K  F  V  F  T  N  F  N  T  V  N  E  D  G  I  N  N  K  L  Y  I  F  V  L  G  L  L  M  S  Q  Y  T  L  T  G  Y  D  A  S  A  H  M  :  T  E  E  T  K  D  A  D  K  N  G  P  K  G  I  V  S  A  I  G  I  S  I  L  A  G  W  A  Y  I  L  G  I  T  F  A  V  T  D  I  P  H  L  L  D  K  N  N  D  S  G  G  Y  A  I  A  Q  I  F  Y  D  V  F  K  S  R  Y  G  S  G  V  G  G  I  V  C  L  S  V  I  A  V  A  V  F  F  C  G  M  S  S  L  T  S  N  S  R :   M  A  Y  A  F  S  R  D  G  A  M  P  Y  S  S  F  W  H  K  V  N  K  H  E  V  P  L  N  A  V  W  T  S  A  F  I  A  F  C  M  A  L  T  :  S  L  G  S  L  V  A  F  Q  A  M  T  S  I  A  T  I  G  L  Y  I  A  Y  A  L  P  I  L  F  R  V  T  L  A  R  K  S  F  T  P  G  P  F  N  L  G  S  Y  G  I  I  V  G  W  V  A  V  F  W  V  A  L  I  S  V  L  F  S  L  P  V  A  Y  P  I  T  D  Q  T  L  N  Y  T  P  V  A  V  V  G  L  V  I  L  V  V  S  S  W  I  F  S  A  R  H  W  F  K  G  P  I  T  N  I  G  N  S  S  E  E  A  *  V  E  K  N  S  F  V  I  R  Q  R  *  I  A  D  S  G  F   </first_frame>
            <second_frame>  V  A  H  A  S  V  N  C  A  T  F  S  C  H  K  L  L  F  D  K  T  D  G  F  Y  I  H  I  A  S  F  S  V  K  F  L  S  F  L  Y  C  R  F  N  I  V  G  Q  V  S  *  R  I  T  R  I  T  I  H  S  F  S  V  *  L  G  L  A  D  S  P  Y  K  T  T  L  I  Q  N  G  K  S  D  C  S  G  L  S  Q  Q  V  *  I  I  H  W  L  S  *  F  R  *  *  F  F  L  A  L  V  D  *  M  V  A  D  I  R  P  P  N  M  W  L  S  P  F  T  L  E  F  C  F  Y  M  L  Y  *  T  V  F  R  F  H  G  C  P  S  L  D  N  *  P  L  H  G  M  F  *  :  V  S  F  F  L  *  F  *  S  Q  W  L  Q  Q  K  E  L  A  L  N  L  C  L  L  T  S  T  L  S  M  R  M  E  S  T  I  N  S  T  S  S  S  S  D  F  S  *  A  S  I  H  *  Q  V  M  T  L  L  P  I  * :   R  K  K  P  K  M  Q  I  R  M  D  Q  K  E  L  *  V  L  L  A  Y  Q  F  L  L  A  G  L  T  Y  L  V  *  P  L  Q  L  Q  I  S  H  I  C  *  I  K  T  M  I  L  V  A  M  L  L  L  K  S  F  M  T  Y  S  R  V  D  M  A  V  V  L  V  E  L  F  A  *  V  L  L  L  L  P  Y  S  F  V  V  *  A  H  *  L  A  T  R   : G  W  L  M  H  S  P  E  M  E  Q  C  H  I  R  R  S  G  I  K  *  T  S  M  R  F  R  *  M  Q  S  G  R  Q  L  L  *  H  F  A  W  H  *  R :   L  L  E  A  W  *  H  F  K  P  *  H  L  *  R  Q  S  G  F  T  L  L  M  P  C  Q  S  C  F  E  *  L  *  L  E  N  P  S  L  Q  V  L  S  T  W  E  A  T  G  S  L  *  V  G  L  Q  Y  F  G  S  R  S  S  L  C  S  S  L  C  L  L  P  T  L  L  Q  I  K  L  S  T  I  L  Q  S  R  L  L  A  L  S  F  L  L  F  L  H  G  S  S  V  L  G  I  G  L  K  V  L  L  P  I  *  A  T  L  V  K  K  H  K  *  R  K  I  L  L  *  L  D  N  A  E  L  L  I  A  D  L  </second_frame>
            <third_frame>   *  L  M  P  P  S  I  V  Q  H  S  A  V  I  S  Y  F  L  T  K  L  M  V  S  T  F  I  L  L  L  S  Q  *  N  F  F  P  F  C  I  A  G  S  T  L  L  V  R  Y  R  E  E  L  L  V  L  P  F  T  V  L  V  S  N  W  A  *  L  I  H  H  I  K  Q  L  *  S  K  T  E  N  L  I  A  V  G  C  H  N  K  C  R  L  F  I  G  S  V  S  S  G  N  N  S  S  *  H  W  W  I  K  W  W  R  I  S  G  L  Q  I  C  G  Y  R  P  S  R  W  N  S  A  F  T  C  F  I  K  Q  S  S  D  F  M  A  V  L  H  W  T  T  S  R  C  M  E  C  F  R :   C  L  S  S  Y  D  F  D  P  N  G  C  N  R  K  S  *  R  *  I  C  V  Y  *  L  Q  H  C  Q  *  G  W  N  Q  Q  *  T  L  H  L  R  P  R  T  S  H  E  P  V  Y  I  D  R  L  *  R  F  C  P  Y   : D  G  R  N  Q  R  C  R  *  E  W  T  K  R  N  C  K  C  Y  W  H  I  N  S  C  W  L  G  L  H  T  W  Y  N  L  C  S  Y  R  Y  P  T  S  V  R  *  K  Q  *  F  W  W  L  C  Y  C  S  N  L  L  *  R  I  Q  E  *  I  W  Q  W  C  W  W  N  C  L  L  K  C  Y  C  C  C  R  I  L  L  W  Y  E  L  I  N  *  Q  L  E  :  D  G  L  C  I  L  Q  R  W  S  N  A  I  F  V  V  L  A  *  S  K  Q  A  *  G  S  A  K  C  S  L  D  V  S  F  Y  S  I  L  H  G  I  D   : V  S  W  K  L  G  S  I  S  S  H  D  I  Y  S  D  N  R  A  L  H  C  L  C  L  A  N  P  V  S  S  D  S  S  S  K  I  L  H  S  R  S  F  Q  L  G  K  L  R  D  H  C  R  L  G  C  S  I  L  G  R  A  H  L  C  A  L  L  F  A  C  C  L  P  Y  Y  R  S  N  S  Q  L  Y  S  S  R  G  C  W  P  C  H  S  C  C  F  F  M  D  L  Q  C  *  A  L  V  *  R  S  Y  Y  Q  Y  R  Q  L  *  *  R  S  I  S  R  E  K  F  F  C  N  *  T  T  L  N  C  *  *  R  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78361" stop="78586"/>
                    <exon start="78669" stop="78850"/>
                    <exon start="79268" stop="79557"/>
                    <exon start="79638" stop="79767"/>
                    <exon start="80226" stop="80588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1188</number_coding_nucleotides>
                  <number_encoded_amino_acids>396</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQWAVTTSVDYSLAQLVQVIILLSTGGLNGGGYQASKYVVIALHAGILLLHALLNSLPISWLSFIGQLAAAWNVLGVFLLMILIPMVATERASAKFVFTNFNTVNEDGINNKLYIFVLGLLMSQYTLTGYDASAHMTEETKDADKNGPKGIVSAIGISILAGWAYILGITFAVTDIPHLLDKNNDSGGYAIAQIFYDVFKSRYGSGVGGIVCLSVIAVAVFFCGMSSLTSNSRMAYAFSRDGAMPYSSFWHKVNKHEVPLNAVWTSAFIAFCMALTSLGSLVAFQAMTSIATIGLYIAYALPILFRVTLARKSFTPGPFNLGSYGIIVGWVAVFWVALISVLFSLPVAYPITDQTLNYTPVAVVGLVILVVSSWIFSARHWFKGPITNIGNSSEEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="76279" e_stop="76382"/>
            <exon e_start="78238" e_stop="78256"/>
            <exon e_start="78367" e_stop="78586"/>
            <exon e_start="78669" e_stop="78850"/>
            <exon e_start="79268" e_stop="79557"/>
            <exon e_start="79638" e_stop="79767"/>
            <exon e_start="80226" e_stop="80644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.522" acc_prob="0.687" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.650" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.989"/>
          <exon-intron don_prob="0.988" acc_prob="0.624" e_score="1.000"/>
          <exon-intron don_prob="0.635" acc_prob="0.540" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76279" e_stop="76382" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76383" i_stop="78237" i_length="1855"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78238" e_stop="78256" e_length="19"/>
          </exon>
          <intron i_serial="2" don_prob="0.522" acc_prob="0.687">
            <gDNA_intron_boundary i_start="78257" i_stop="78366" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="78367" e_stop="78586" e_length="220"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.650">
            <gDNA_intron_boundary i_start="78587" i_stop="78668" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="78669" e_stop="78850" e_length="182"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="78851" i_stop="79267" i_length="417"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79268" e_stop="79557" e_length="290"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.624">
            <gDNA_intron_boundary i_start="79558" i_stop="79637" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79638" e_stop="79767" e_length="130"/>
          </exon>
          <intron i_serial="6" don_prob="0.635" acc_prob="0.540">
            <gDNA_intron_boundary i_start="79768" i_stop="80225" i_length="458"/>
          </intron>
          <exon e_serial="7" e_score="0.957">
            <gDNA_exon_boundary e_start="80226" e_stop="80644" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76279" stop="76382"/>
              <exon start="78238" stop="78256"/>
              <exon start="78367" stop="78586"/>
              <exon start="78669" stop="78850"/>
              <exon start="79268" stop="79330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79292" stop="79557"/>
              <exon start="79638" stop="79767"/>
              <exon start="80226" stop="80291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79455" stop="79557"/>
              <exon start="79638" stop="79767"/>
              <exon start="80226" stop="80644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424026" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGAGATTTGTTCTTCTTATCCAACTTCTGGGGGTCTTTATTATTGGAGTGCTAAGCTTGCTGGTCCAAGCTGGGCACCTTTTGCTTCTTGGATCACTGGCTG : GTTCAACATTGTTGGTCAG : TGGGCTGTCACAACAAGTGTAGATTATTCATTGGCTCAGTTAGTTCAGGTAATAATTCTTCTTAGCACTGGTGGATTAAATGGTGGCGGATATCAGGCCTCCAAATATGTGGTTATCGCCCTTCACGCTGGAATTCTGCTTTTACATGCTTTATTAAACAGTCTTCCGATTTCATGGCTGTCCTTCATTGGACAACTAGCCGCTGCATGGAATGTTTTAG : GTGTCTTTCTTCTTATGATTTTGATCCCAATGGTTGCAACAGAAAGAGCTAGCGCTAAATTTGTGTTTACTAACTTCAACACTGTCAATGAGGATGGAATCAACAATAAACTCTACATCTTCGTCCTCGGACTTCTCATGAGCCAGTATACATTGACAGGTTATGACGCTTCTGCCCATATG : ACGGAAGAAACCAAAGATGCAGATAAGAATGGACCAAAAGGAATTGTAAGTGCTATTGGCATATCAATTCTTGCTGGCTGGGCTTACATACTTGGTATAACCTTTGCAGTTACAGATATCCCACATCTGTTAGATAAAAACAATGATTCTGGTGGCTATGCTATTGCTCAAATCTTTTATGACGTATTCAAGAGTAGATATGGCAGTGGTGTTGGTGGAATTGTTTGCTTAAGTGTTATTGCTGTTGCCGTATTCTTTTGTGGTATGAGCTCATTAACTAGCAACTCGAG : GATGGCTTATGCATTCTCCAGAGATGGAGCAATGCCATATTCGTCGTTCTGGCATAAAGTAAACAAGCATGAGGTTCCGCTAAATGCAGTCTGGACGTCAGCTTTTATAGCATTTTGCATGGCATTGACG : TCTCTTGGAAGCTTGGTAGCATTTCAAGCCATGACATCTATAGCGACAATCGGGCTTTACATTGCTTATGCCTTGCCAATCCTGTTTCGAGTGACTCTAGCTCGAAAATCCTTCACTCCAGGTCCTTTCAACTTGGGAAGCTACGGGATCATTGTAGGTTGGGTTGCAGTATTTTGGGTCGCGCTCATCTCTGTGCTCTTCTCTTTGCCTGTTGCCTACCCTATTACAGATCAAACTCTCAACTATACTCCAGTCGCGGTTGTTGGCCTTGTCATTCTTGTTGTTTCTTCATGGATCTTCAGTGCTAGGCATTGGTTTAAAGGTCCTATTACCAATATAGGCAACTCTAGTGAAGAAGCATAAGTAGAGAAAAATTCTTTTGTAATTAGACAACGCTGAATTGCTGATAGCGGATTTAA</gDNA_template>
            <first_frame> A  E  I  C  S  S  Y  P  T  S  G  G  L  Y  Y  W  S  A  K  L  A  G  P  S  W  A  P  F  A  S  W  I  T  G  W :   F  N  I  V  G  Q  :  W  A  V  T  T  S  V  D  Y  S  L  A  Q  L  V  Q  V  I  I  L  L  S  T  G  G  L  N  G  G  G  Y  Q  A  S  K  Y  V  V  I  A  L  H  A  G  I  L  L  L  H  A  L  L  N  S  L  P  I  S  W  L  S  F  I  G  Q  L  A  A  A  W  N  V  L   : G  V  F  L  L  M  I  L  I  P  M  V  A  T  E  R  A  S  A  K  F  V  F  T  N  F  N  T  V  N  E  D  G  I  N  N  K  L  Y  I  F  V  L  G  L  L  M  S  Q  Y  T  L  T  G  Y  D  A  S  A  H  M  :  T  E  E  T  K  D  A  D  K  N  G  P  K  G  I  V  S  A  I  G  I  S  I  L  A  G  W  A  Y  I  L  G  I  T  F  A  V  T  D  I  P  H  L  L  D  K  N  N  D  S  G  G  Y  A  I  A  Q  I  F  Y  D  V  F  K  S  R  Y  G  S  G  V  G  G  I  V  C  L  S  V  I  A  V  A  V  F  F  C  G  M  S  S  L  T  S  N  S  R :   M  A  Y  A  F  S  R  D  G  A  M  P  Y  S  S  F  W  H  K  V  N  K  H  E  V  P  L  N  A  V  W  T  S  A  F  I  A  F  C  M  A  L  T  :  S  L  G  S  L  V  A  F  Q  A  M  T  S  I  A  T  I  G  L  Y  I  A  Y  A  L  P  I  L  F  R  V  T  L  A  R  K  S  F  T  P  G  P  F  N  L  G  S  Y  G  I  I  V  G  W  V  A  V  F  W  V  A  L  I  S  V  L  F  S  L  P  V  A  Y  P  I  T  D  Q  T  L  N  Y  T  P  V  A  V  V  G  L  V  I  L  V  V  S  S  W  I  F  S  A  R  H  W  F  K  G  P  I  T  N  I  G  N  S  S  E  E  A  *  V  E  K  N  S  F  V  I  R  Q  R  *  I  A  D  S  G  F   </first_frame>
            <second_frame>  L  R  F  V  L  L  I  Q  L  L  G  V  F  I  I  G  V  L  S  L  L  V  Q  A  G  H  L  L  L  L  G  S  L  A   : G  S  T  L  L  V  S :   G  L  S  Q  Q  V  *  I  I  H  W  L  S  *  F  R  *  *  F  F  L  A  L  V  D  *  M  V  A  D  I  R  P  P  N  M  W  L  S  P  F  T  L  E  F  C  F  Y  M  L  Y  *  T  V  F  R  F  H  G  C  P  S  L  D  N  *  P  L  H  G  M  F  *  :  V  S  F  F  L  *  F  *  S  Q  W  L  Q  Q  K  E  L  A  L  N  L  C  L  L  T  S  T  L  S  M  R  M  E  S  T  I  N  S  T  S  S  S  S  D  F  S  *  A  S  I  H  *  Q  V  M  T  L  L  P  I  * :   R  K  K  P  K  M  Q  I  R  M  D  Q  K  E  L  *  V  L  L  A  Y  Q  F  L  L  A  G  L  T  Y  L  V  *  P  L  Q  L  Q  I  S  H  I  C  *  I  K  T  M  I  L  V  A  M  L  L  L  K  S  F  M  T  Y  S  R  V  D  M  A  V  V  L  V  E  L  F  A  *  V  L  L  L  L  P  Y  S  F  V  V  *  A  H  *  L  A  T  R   : G  W  L  M  H  S  P  E  M  E  Q  C  H  I  R  R  S  G  I  K  *  T  S  M  R  F  R  *  M  Q  S  G  R  Q  L  L  *  H  F  A  W  H  *  R :   L  L  E  A  W  *  H  F  K  P  *  H  L  *  R  Q  S  G  F  T  L  L  M  P  C  Q  S  C  F  E  *  L  *  L  E  N  P  S  L  Q  V  L  S  T  W  E  A  T  G  S  L  *  V  G  L  Q  Y  F  G  S  R  S  S  L  C  S  S  L  C  L  L  P  T  L  L  Q  I  K  L  S  T  I  L  Q  S  R  L  L  A  L  S  F  L  L  F  L  H  G  S  S  V  L  G  I  G  L  K  V  L  L  P  I  *  A  T  L  V  K  K  H  K  *  R  K  I  L  L  *  L  D  N  A  E  L  L  I  A  D  L  </second_frame>
            <third_frame>   *  D  L  F  F  L  S  N  F  W  G  S  L  L  L  E  C  *  A  C  W  S  K  L  G  T  F  C  F  L  D  H  W  L  :  V  Q  H  C  W  S   : V  G  C  H  N  K  C  R  L  F  I  G  S  V  S  S  G  N  N  S  S  *  H  W  W  I  K  W  W  R  I  S  G  L  Q  I  C  G  Y  R  P  S  R  W  N  S  A  F  T  C  F  I  K  Q  S  S  D  F  M  A  V  L  H  W  T  T  S  R  C  M  E  C  F  R :   C  L  S  S  Y  D  F  D  P  N  G  C  N  R  K  S  *  R  *  I  C  V  Y  *  L  Q  H  C  Q  *  G  W  N  Q  Q  *  T  L  H  L  R  P  R  T  S  H  E  P  V  Y  I  D  R  L  *  R  F  C  P  Y   : D  G  R  N  Q  R  C  R  *  E  W  T  K  R  N  C  K  C  Y  W  H  I  N  S  C  W  L  G  L  H  T  W  Y  N  L  C  S  Y  R  Y  P  T  S  V  R  *  K  Q  *  F  W  W  L  C  Y  C  S  N  L  L  *  R  I  Q  E  *  I  W  Q  W  C  W  W  N  C  L  L  K  C  Y  C  C  C  R  I  L  L  W  Y  E  L  I  N  *  Q  L  E  :  D  G  L  C  I  L  Q  R  W  S  N  A  I  F  V  V  L  A  *  S  K  Q  A  *  G  S  A  K  C  S  L  D  V  S  F  Y  S  I  L  H  G  I  D   : V  S  W  K  L  G  S  I  S  S  H  D  I  Y  S  D  N  R  A  L  H  C  L  C  L  A  N  P  V  S  S  D  S  S  S  K  I  L  H  S  R  S  F  Q  L  G  K  L  R  D  H  C  R  L  G  C  S  I  L  G  R  A  H  L  C  A  L  L  F  A  C  C  L  P  Y  Y  R  S  N  S  Q  L  Y  S  S  R  G  C  W  P  C  H  S  C  C  F  F  M  D  L  Q  C  *  A  L  V  *  R  S  Y  Y  Q  Y  R  Q  L  *  *  R  S  I  S  R  E  K  F  F  C  N  *  T  T  L  N  C  *  *  R  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76279" stop="76382"/>
                    <exon start="78238" stop="78256"/>
                    <exon start="78367" stop="78586"/>
                    <exon start="78669" stop="78850"/>
                    <exon start="79268" stop="79557"/>
                    <exon start="79638" stop="79767"/>
                    <exon start="80226" stop="80588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1305</number_coding_nucleotides>
                  <number_encoded_amino_acids>435</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEICSSYPTSGGLYYWSAKLAGPSWAPFASWITGWFNIVGQWAVTTSVDYSLAQLVQVIILLSTGGLNGGGYQASKYVVIALHAGILLLHALLNSLPISWLSFIGQLAAAWNVLGVFLLMILIPMVATERASAKFVFTNFNTVNEDGINNKLYIFVLGLLMSQYTLTGYDASAHMTEETKDADKNGPKGIVSAIGISILAGWAYILGITFAVTDIPHLLDKNNDSGGYAIAQIFYDVFKSRYGSGVGGIVCLSVIAVAVFFCGMSSLTSNSRMAYAFSRDGAMPYSSFWHKVNKHEVPLNAVWTSAFIAFCMALTSLGSLVAFQAMTSIATIGLYIAYALPILFRVTLARKSFTPGPFNLGSYGIIVGWVAVFWVALISVLFSLPVAYPITDQTLNYTPVAVVGLVILVVSSWIFSARHWFKGPITNIGNSSEEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="84135" PGL_stop="80994"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84135" e_stop="84031"/>
            <exon e_start="82312" e_stop="82257"/>
            <exon e_start="81471" e_stop="80994"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.969" e_score="0.867"/>
          <exon-intron don_prob="0.993" acc_prob="0.970" e_score="0.929"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.867">
            <gDNA_exon_boundary e_start="84135" e_stop="84031" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.969">
            <gDNA_intron_boundary i_start="84030" i_stop="82313" i_length="1718"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="82312" e_stop="82257" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.970">
            <gDNA_intron_boundary i_start="82256" i_stop="81472" i_length="785"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="81471" e_stop="80994" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84135" stop="84031"/>
              <exon start="82312" stop="82257"/>
              <exon start="81471" stop="80994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82276" stop="82257"/>
              <exon start="81471" stop="80994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGAAGCAAAAGGCAGAAGATCAAAGGAGATGAAGAAACTAGTAAAGACAAATCTAGAAAGGAGAAACACAAATCTCATAAATCGAAACGGCGTTCTAATGAAG : ATAGGGAGTCGGGGGAAAAGCACAAAAGCAAGAGTCACAAACATAAGGATAAGTTG : AAAATCAAGTTTGAAGAACTATCAAAGGATGATTATTTCTCTAAGAACAATGAATTTGCTACCTGGCTGAAAGATAAGAAGAAATTGTTCTTCTCAGATCTTTCTTCTGAGGCTGCTCGTGATTTATTTTCCGACTTTGTCAAAGAATGGAACAAGGGAAAGCTTGACATCCAATACTACGAAGGAATCACAACAGCACCACGGTCATCCCATGCTTGGAACATAAAAAAGTAGCGGAATTCCATGTCTCTCTTCTACTTAAATAGCAGTAGCAGTGACTCTATCCCAGCTGTTCCATGGTTACGCGTTAGGCACCTTTTCTTATTCTTTGGTAAAATCGTCGTCTTTCTGTTGTAACAACTACTTTGATCTAGCATAGATGAGGTTTATGTTATGTCAAATACTTTGGCTAGCATCGCTTTCAGTGTGAAATTTTGCTGCTTGTTTGATTTTGAATGCATAGAAGCCTTTTCGTTCC</gDNA_template>
            <first_frame> G  E  A  K  G  R  R  S  K  E  M  K  K  L  V  K  T  N  L  E  R  R  N  T  N  L  I  N  R  N  G  V  L  M  K  :  I  G  S  R  G  K  S  T  K  A  R  V  T  N  I  R  I  S  * :   K  S  S  L  K  N  Y  Q  R  M  I  I  S  L  R  T  M  N  L  L  P  G  *  K  I  R  R  N  C  S  S  Q  I  F  L  L  R  L  L  V  I  Y  F  P  T  L  S  K  N  G  T  R  E  S  L  T  S  N  T  T  K  E  S  Q  Q  H  H  G  H  P  M  L  G  T  *  K  S  S  G  I  P  C  L  S  S  T  *  I  A  V  A  V  T  L  S  Q  L  F  H  G  Y  A  L  G  T  F  S  Y  S  L  V  K  S  S  S  F  C  C  N  N  Y  F  D  L  A  *  M  R  F  M  L  C  Q  I  L  W  L  A  S  L  S  V  *  N  F  A  A  C  L  I  L  N  A  *  K  P  F  R  S </first_frame>
            <second_frame>  E  K  Q  K  A  E  D  Q  R  R  *  R  N  *  *  R  Q  I  *  K  G  E  T  Q  I  S  *  I  E  T  A  F  *  *  R :   *  G  V  G  G  K  A  Q  K  Q  E  S  Q  T  *  G  *  V   : E  N  Q  V  *  R  T  I  K  G  *  L  F  L  *  E  Q  *  I  C  Y  L  A  E  R  *  E  E  I  V  L  L  R  S  F  F  *  G  C  S  *  F  I  F  R  L  C  Q  R  M  E  Q  G  K  A  *  H  P  I  L  R  R  N  H  N  S  T  T  V  I  P  C  L  E  H  K  K  V  A  E  F  H  V  S  L  L  L  K  *  Q  *  Q  *  L  Y  P  S  C  S  M  V  T  R  *  A  P  F  L  I  L  W  *  N  R  R  L  S  V  V  T  T  T  L  I  *  H  R  *  G  L  C  Y  V  K  Y  F  G  *  H  R  F  Q  C  E  I  L  L  L  V  *  F  *  M  H  R  S  L  F  V   </second_frame>
            <third_frame>   R  S  K  R  Q  K  I  K  G  D  E  E  T  S  K  D  K  S  R  K  E  K  H  K  S  H  K  S  K  R  R  S  N  E   : D  R  E  S  G  E  K  H  K  S  K  S  H  K  H  K  D  K  L  :  K  I  K  F  E  E  L  S  K  D  D  Y  F  S  K  N  N  E  F  A  T  W  L  K  D  K  K  K  L  F  F  S  D  L  S  S  E  A  A  R  D  L  F  S  D  F  V  K  E  W  N  K  G  K  L  D  I  Q  Y  Y  E  G  I  T  T  A  P  R  S  S  H  A  W  N  I  K  K  *  R  N  S  M  S  L  F  Y  L  N  S  S  S  S  D  S  I  P  A  V  P  W  L  R  V  R  H  L  F  L  F  F  G  K  I  V  V  F  L  L  *  Q  L  L  *  S  S  I  D  E  V  Y  V  M  S  N  T  L  A  S  I  A  F  S  V  K  F  C  C  L  F  D  F  E  C  I  E  A  F  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0122H05.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84133" stop="84031"/>
                    <exon start="82312" stop="82257"/>
                    <exon start="81471" stop="81238"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSKRQKIKGDEETSKDKSRKEKHKSHKSKRRSNEDRESGEKHKSKSHKHKDKLKIKFEELSKDDYFSKNNEFATWLKDKKKLFFSDLSSEAARDLFSDFVKEWNKGKLDIQYYEGITTAPRSSHAWNIKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 121 chains have been computed
$ 
$ memory statistics:
$ 280752 bytes spliced alignments in total
$ 74 spliced alignments have been stored
$ 3793 bytes was the average size of a spliced alignment
$ 26072 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1738 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 143 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:40:52
-->
