<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:36:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545686" ref_strand="+" ref_description="SGN-E545686 [TUS-68-K15]">
      <seq>atcaattgggatatattcccaaacaatacattaaactaggtagtcgataatatatttgattacataaatcatttatattcgttttgttctatttagattcatttgtatttgtacgctaagatgggcgttatatgggatgaagaaaaattggaggaaattgaagcgaataaaccggtgagaatgaagatcaccgagccaaagacaccatatcatcgccctaaaattgatgataatgataattttgaggaatataacaatcgtagcgatgaagtggatgatgacatggcatcgtgttcaagtaaaagtagatctgatgatcctcgtaagaataatgataatgacgttgttgttatggatcatgctgatgaagattccgacgaatcggagaggaaaaggaatttcatagagcatagaagaggtcattatgatgaatacaagagaatcaaagagctacaaaggaatggatctcttctcgaagaatttgacgatgatgataatgatgatgataataataatgttattgatgatgggtgttaagggcataaaaaattgaggaagaaaaggaaaacacttcaacatagtcatcttattttcatgaatattgtgttttttttctcttcgatttaatcattttggaaaacatgtaattagctaaagaatttatccgtaatctctagctaatctgtcgctaaatagctcctagctaattagattttatgttaatctatcgctcaatgaaatacctgtgatttttgttgtttagctaggaaatttatgagtagctaatttcttgttttcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="5177" stop="3777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4877" g_stop="4077" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="802" polyA_stop="813"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E545686" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4877" e_stop="4077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAGGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAGAATTTGACGATGATGATAATGATGATGATAATAATAATGTTATTGATGAT-GGTGTTAAGGGCAT-AAAAATTGAGGAAGAAAAGGAAAACACTTCAACATAGTCATCTTATTTTCATGAATATTGTGTTTTTTTTCTCTTCGATTTAATCATTTTGGAAAACATGTAATTAGCTAAAGAATTTATCCGTAATCTCTAGCTAATCTGTCGCTAAATAGCTCCTAGCTAATTAGATTTTATGTTAATCTATCGCTCAATGAAATTACCTGTGATTTTTGTTGTTTAGCTAGGAAAATTTATGAGTAGCTAATTTCTTGTTTTCTTA</genome_strand>
        <mrna_strand>ATCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAGGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAGAATTTGACGATGATGATAATGATGATGATAATAATAATGTTATTGATGATGGGTGTTAAGGGCATAAAAAATTGAGGAAGAAAAGGAAAACACTTCAACATAGTCATCTTATTTTCATGAATATTGTGTTTTTTTTCTCTTCGATTTAATCATTTTGGAAAACATGTAATTAGCTAAAGAATTTATCCGTAATCTCTAGCTAATCTGTCGCTAAATAGCTCCTAGCTAATTAGATTTTATGTTAATCTATCGCTCAATGAAA-TACCTGTGATTTTTGTTGTTTAGCTAGG-AAATTTATGAGTAGCTAATTTCTTGTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310668" ref_strand="+" ref_description="SGN-E310668 [cLEZ-19-L2]">
      <seq>tcaattgggatatattcccaaacaatacattaaactaggtagtcgataatatatttgattacataaatcatttatattcgttttgttctatttagattcatttgtatttgtacgctaagatgggcgttatatgggatgaagaaaaattggaggaaattgaagcgaataaaccggtgagaatgaagatcaccgagccaaagacaccatatcatcgccctaaaattgatgataatgataattttgaggaatataacaatcgtagcgatgaagtggatgatgacatggcatcgtgttcaagtaaaagtagatctgatgatcctcgtaagaataatgataatgacgttgttgttatggatcatgctgatgaagattccgacgaatcggagaggaaaaggaatttcatagagcatagaagaggtcattatgatgaatacaagagaatcaaagagctacaaaggaatggatctcttctcgaagaatttgacgatgatgataatgatgatgataataataatgttattgatgatggtgttaagggcataaaaattgaggaagaaaaggaaaacacttcaacatagtcatcttattttcatgaatattgtgttttttttctcttcgatttaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="5176" stop="3950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4876" g_stop="4250" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E310668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4876" e_stop="4250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAGGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAGAATTTGACGATGATGATAATGATGATGATAATAATAATGTTATTGATGATGGTGTTAAGGGCATAAAAATTGAGGAAGAAAAGGAAAACACTTCAACATAGTCATCTTATTTTCATGAATATTGTGTTTTTTTTCTCTTCGATTTAATCA</genome_strand>
        <mrna_strand>TCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAGGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAGAATTTGACGATGATGATAATGATGATGATAATAATAATGTTATTGATGATGGTGTTAAGGGCATAAAAATTGAGGAAGAAAAGGAAAACACTTCAACATAGTCATCTTATTTTCATGAATATTGTGTTTTTTTTCTCTTCGATTTAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213870" ref_strand="+" ref_description="SGN-E213870 [cLEC-76-D2]">
      <seq>tttcttcgatttgagaatcaattgggatatattcccaaacaatacattaaactaggtagtcgataatatatttgattacataaatcatttatattcgttttgttctatttagattcatttgtatttgtacgctaagatgggcgttatatgggatgaagaaaaattggaggaaattgaagcgaataaaccggtgagaatgaagatcaccgagccaaagacaccatatcatcgccctaaaattgatgataatgataattttgaggaatataacaatcgtagcgatgaagtggatgatgacatggcatcgtgttcaagtaaaagtagatctgatgatcctcgtaagaataatgataatgacgttgttgttatggatcatgctgatgaagattccgacgaatcggagaggaaaaggaatttcatagagcatagaagaagtcattatgatgaatacaagagaatcaaagagctacaaaggaatggatctcttctcgaaaaatttgacgatgatgataatgatgatgataataataatgttattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="5193" stop="4052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4893" g_stop="4352" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E213870" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4893" e_stop="4352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCGATTTGAGAATCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAGGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAGAATTTGACGATGATGATAATGATGATGATAATAATAATGTTATTGATG</genome_strand>
        <mrna_strand>TTTCTTCGATTTGAGAATCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAAGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAAAATTTGACGATGATGATAATGATGATGATAATAATAATGTTATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287499" ref_strand="+" ref_description="SGN-E287499 [cLES-9-G8]">
      <seq>attacataaatcatttatattcgttttgttctatttagattcatttgtatttgtacgctaagatgggcgttatatgggatgaagaaaaattggaggaaattgaagcgaataaaccggtgagaatgaagatcaccgagccaaagacaccatatcatcgccctaaaattgatgataatgataattttgaggaatataacaatcgtagcgatgaagtggatgatgacatggcatcgtgttcaagtaaaagtagatctgatgatcctcgtaagaataatgataatgacgttgttgttatggatcatgctgatgaagattccgacgaatcggagaggaaaaggaatttcatagagcatagaagaggtcattatgatgaatacaagagaatcaaagagctacaaaggaatggatctcttctcgaagaatttgacgatgatgataatgatgatgataataataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="5119" stop="4062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4819" g_stop="4362" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E287499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4819" e_stop="4362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAGGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAGAATTTGACGATGATGATAATGATGATGATAATAATAAT</genome_strand>
        <mrna_strand>ATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAGGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAGAATTTGACGATGATGATAATGATGATGATAATAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203445" ref_strand="+" ref_description="SGN-E203445 [cLEC-15-E23]">
      <seq>tttcttcgatttgagaatcaattgggatatattcccaaacaatacattaaactaggtagtcgataatatatttgattacataaatcatttatattcgttttgttctatttagattcatttgtatttgtacgctaagatgggcgttatatgggatgaagaaaaattggaggaaattgaagcgaataaaccggtgagaatgaagatcaccgagccaaagacaccatatcatcgccctaaaattgatgataatgataattttgaggaatataacaatcgtagcgatgaagtggatgatgacatggcatcgtgttcaagtaaaagtagatctgatgatcctcgtaagaataatgataatgacgttgttgttatggatcatgctgatgaagattccgacgaatcggagaggaaaaggaatttcatagagcatagaagaggtcattatgatgaatacaagagaatcaaagagctacaaaggaatggatctcttctcgaagaatttgacgatgatgataatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="5193" stop="4074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4893" g_stop="4374" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E203445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4893" e_stop="4374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCGATTTGAGAATCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAGGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAGAATTTGACGATGATGATAATGATGAT</genome_strand>
        <mrna_strand>TTTCTTCGATTTGAGAATCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAGGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAGAATTTGACGATGATGATAATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281733" ref_strand="+" ref_description="SGN-E281733 [cLER-14-E23]">
      <seq>tttaactcatcattcctcattttctttcttcgatttgagaatcaattgggatatattcccaaacaatacattaaactaggtagtcgataatatatttgattacataaatcatttatattcgttttgttctatttagattcatttgtatttgtacgctaagatgggcgttatatgggatgaagaaaaattggaggaaattgaagcgaataaaccggtgagaatgaagatcaccgagccaaagacaccatatcatcgccctaaaattgatgataatgataattttgaggaatataacaatcgtagcgatgaagtggatgatgacatggcatcgtgttcaagtaaaagtagatctgatgatcctcgtaagaataatgataatgacgttgttgttatggatcatgctgatgaagattccgacgaatcggagaggaaaaggaatttcatagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="5217" stop="4168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4917" g_stop="4468" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E281733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4917" e_stop="4468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACTCATCATTCCTCATTTTCTTTCTTCGATTTGAGAATCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCA</genome_strand>
        <mrna_strand>TTTAACTCATCATTCCTCATTTTCTTTCTTCGATTTGAGAATCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206689" ref_strand="+" ref_description="SGN-E206689 [cLEC-31-I13]">
      <seq>tttgattacataaatcatttatattcgttttggtctatttagattcatttgtatttgtacgctaagatgggcgttatatgggatgaagaaaaattggaggaaattgaagcgaattaaccggtgagaatgaagatcaccgagccaaagacaccatatcattgccctaaaattgatgataatggttattttgaggaatataacaatcgttgcgatgaagtggatgatgacatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="5123" stop="4291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4823" g_stop="4591" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E206689" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4823" e_stop="4591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGC</genome_strand>
        <mrna_strand>TTTGATTACATAAATCATTTATATTCGTTTTGGTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATTAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATTGCCCTAAAATTGATGATAATGGTTATTTTGAGGAATATAACAATCGTTGCGATGAAGTGGATGATGACATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715698" ref_strand="+" ref_description="SGN-E715698 [FB15AB01]">
      <seq>agatctcaatttttctcttcaattcaggtttaaaataaaaaatgggtgaaccaaagaagcaacaaccagttttcactaaggttgatcagcttaggccaacggctactgggctaaatcttactgtgaaggtggttaatacaaagatggtagtgccaaggggaaatcaaggccgtcagatgcgattggctgaatgcttggttggtgatgagacagggatgatcattttcactgctagaaatgatcaagtcgacatgatgaaagaaggtgctactgtaattctgcgcaatgcaaaaatagatatgttcaagggatcaatgaggcttgcagtggacaggtggggacgtattgaagttaccgaacctgctagtttctctgtcaaggaagacagtaatctgtctcttatcgagtttgaacaagtgactgttgttgaacagtaactcaagacagcccatcgctatgataatgtcccgtttgcagagagtataagtaagtttggttctttagggatatgctaatgtcccttcatcagttaaagtaaaaactacttgttttgttaagtcagaaagttctcttcttttttttgtagtggaagtttttgtagatagcaaggtatgtagctgcaataaacagtagtgtacaacttgcttgtttatttatttggaaggattgtgtagccaccatagaacttactttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8491" stop="5248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8191" g_stop="8165" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7963" g_stop="7745" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="246" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5995" g_stop="5548" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="694" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5547" i_stop="5332" i_length="216">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5331" g_stop="5321" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="705" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E715698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8191" e_stop="8165"/>
          <exon e_start="7963" e_stop="7745"/>
          <exon e_start="5995" e_stop="5548"/>
          <exon e_start="5331" e_stop="5321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTCAATTTTTCTCTTCAATTCAGGTAAATCAAAAACTAAATCTTCAAAATTATTACTATTCAATATATTAAATTCAAGAATTTTTATGTTTTCTGTTAGTCTGTAGCTTTCTATGGTGGTGTATTGATCAAAGATTTGTTGTGGTTTATGAATGTGTTTGAGTTTATTTTTCAATTTATTGATTTGGGTATGTGTAAAGATTTGATCTTTTTGGATTTTGTTAGGTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAGGTATTGTCTTTGGTTTCAATTTAGCATTCAGTATCTATCCATAAAAAGAGAGAATCCGGATTTGTAGTAGTAACATTTTCAAGGGGCTCACAGTGGTGTGTATTTCTTGTATCCATTCTAACTTGCTGTGATATCTGTTTTGGGATTAATATTGATTATAAGGGTTTAGGGGAATCCTAGTAGCTCAGTTGGTTGACTAGATGGATTTTTAGATTAATCGTGGTTATAAGGGTATAGCATATGTTGCTTGGACACTTCAAAAAATGTGTGTCGGATACTCCAAAAGTAGTGCTCTTTTGAAGGATCCGACGTGGTCGTGGCAATATTTTTAGAGAGTCCGAGCAACACGGGGTATGAGAATCTTAGTAACTCAATTGGTTGATTGCCTGAAATTTTTCCTTGTGGGGACTTGATTCCCCATCTTGTAATTCCCTCCCCCTTTTCCCTGTAACTACCCCCAATTTTTTTAAAAAGGGTTATAAGGGTATAATGGTAGTAAAGACTGTATATTTAACGTTAATCAACTGAGAAAGGGAGTTGATATTGTGGTGATATCGTGGAGTCATTCTAATTTGCTGCGATTATAGTTTGAGATTAGTCTGTATTACAAGGGTATAATGGCAGTAAAGACTGCATCTTTAATGATAATTGACTGACCAAGGGGCTGATGGTATGTGTTTTGGTGATCTTAGACTCTTAGTATGTGTTTTGGTGGTCTTGATCTTACATTAATCTGTGAGCTTGATGTGTTAATGCTGTTGAAGGGGGAAAAGGAAGAACAATGAAGTTTGATTCTTTTTTGGACTGATTTAACTTCCAAACTTGTTGTGAGGCTTTAAGTAATTGAGACATACTTCACTTATTTGTTCAACCTCACTACCTACATTCCTTTTATGATCTAAAAAAGCTCATTTTGCACTATTGCGTTGAGAGTTTTACTGAGTGGGATGTGAATGAATAGAGGCAGTCAGTTGGCATTCAACATGTCATTCTTCTGCCTTTCCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCTCTTAATGCCCCCAACGGATCTTAGAGTTTTTTTTGCGCTTTTTTGCTTTAGGCTACACTGAATGAAAGGCACACCTTCAATTAGGCATACATAATTTTGCAGGTGATTGTGTGTAAGATATTATTCACTTATTGGTATTATGCTACACGTCTTTACTGGGATGTAGAATTGTATCAATTGTAACTGCATGCAAATATCATTCACCTAGTTTCTTCTGTACAGTTAGCAGTGCAATTTAAGCCAAACTTGTGTTCATCCTATGTCTTTCAGAGTTCAGTAAACCTGAGCCCTGTCTTCTCACAAGAAACAGATTTCCTATTTTTTCTGCTACATGCAAGCATCATATTAACTATTTCAAGAAAGGAGAATCGTGAAATCAGATATTTAGCCAGACATATCTGTCTTTACGCTGGTTTCAGATTCAGCTTTACTGATTTGCTTGGCCAAATCTGCAATCTCTTTTATTTTTTGTGAGCTGTAACCTTTATGTGATGGCCGTGATTAGGATTCATAAACTTCGTCATTTTGGTGATTAGTATTCATGTACTCTCTTCATTTTGGCAAATCGGGTATTTTGAATTATTTTGGTGATTGATTATGAAGAAATGAGGCTTTCATGCATCTTGAATCTTTCTTGAACATGCTTCTATCAGATATCAGGCTGTTCTCATTATCTTATCCTTCTGTTAACTCGAGTACTTTCTCTTTCAGTCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTTATCTGGTGCTTATCATAACTTTTTTTTTTTAATAATCGAGAAATTTTTGAGGGCCAGACGTTAGAGTACTAATATTAAACTCAGCTTACGATTCATAGAGTAAATATTCCATTTTAGAGCAATAGTATGATGTCGCGTAAAGCTTGCTACTCTTTTTGTCCGAGGTATATCAAATAAAATTTCTGATTTCACCATTGATTATAAAATATCTCTTTAGAAAAGAGAAAC</genome_strand>
        <mrna_strand>AGATCTCAATTTTTCTCTTCAATTCAG.........................................................................................................................................................................................................GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTTA........................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541347" ref_strand="+" ref_description="SGN-E541347 [TUS-62-B13](-)">
      <seq>gaatactcagatctcaattttcttctcaattcaggtttaaaataaaaaatgggtgaaccaaagaagcaacaaccagttttcactaaggttgatcagcttaggccaacggctactgggctaaatcttactgtgaaggtggttaatacaaagatggtagtgccaaggggaaatcaaggccgtcagatgcgattggctgaatgcttggttggtgatgagacagggatgatcattttcactgctagaaatgatcaagtcgacatgatgaaagaaggtgctactgtaattctgcgcaatgcaaaaatagatatgttcaagggatcaatgaggcttgcagtggacaggtggggacgtattgaagttaccgaacctgctagtttctctgtcaaggaagacagtaatctgtctcttatcgagtttgaacaagtgactgttgttgaacagtaactcaagacagcccatcgctatgataatgtcccgtttgcagagagtataagtaagtttggttctttagggatatgctaatgtcccttcatcagttaaagtaaaaactacttgttttgttaagtcagaaagttctcttcttttttttgtagtggaagtttttgtagatagcaaggtatgtagctgcaataaacagtagtgtacaacttgcttgtttatttatttggaaggcattgtgtagcccccnatagaacttactttatctggtgcttatcataactttttttttttaataatcgagaaatttttgagggccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8499" stop="5191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8199" g_stop="8165" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7963" g_stop="7745" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="253" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5995" g_stop="5493" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="758" r_length="505" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5492" i_stop="5332" i_length="161">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5331" g_stop="5322" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="768" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E541347" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8199" e_stop="8165"/>
          <exon e_start="7963" e_stop="7745"/>
          <exon e_start="5995" e_stop="5493"/>
          <exon e_start="5331" e_stop="5322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACTCAGATCTCAATTTTTCTCTTCAATTCAGGTAAATCAAAAACTAAATCTTCAAAATTATTACTATTCAATATATTAAATTCAAGAATTTTTATGTTTTCTGTTAGTCTGTAGCTTTCTATGGTGGTGTATTGATCAAAGATTTGTTGTGGTTTATGAATGTGTTTGAGTTTATTTTTCAATTTATTGATTTGGGTATGTGTAAAGATTTGATCTTTTTGGATTTTGTTAGGTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAGGTATTGTCTTTGGTTTCAATTTAGCATTCAGTATCTATCCATAAAAAGAGAGAATCCGGATTTGTAGTAGTAACATTTTCAAGGGGCTCACAGTGGTGTGTATTTCTTGTATCCATTCTAACTTGCTGTGATATCTGTTTTGGGATTAATATTGATTATAAGGGTTTAGGGGAATCCTAGTAGCTCAGTTGGTTGACTAGATGGATTTTTAGATTAATCGTGGTTATAAGGGTATAGCATATGTTGCTTGGACACTTCAAAAAATGTGTGTCGGATACTCCAAAAGTAGTGCTCTTTTGAAGGATCCGACGTGGTCGTGGCAATATTTTTAGAGAGTCCGAGCAACACGGGGTATGAGAATCTTAGTAACTCAATTGGTTGATTGCCTGAAATTTTTCCTTGTGGGGACTTGATTCCCCATCTTGTAATTCCCTCCCCCTTTTCCCTGTAACTACCCCCAATTTTTTTAAAAAGGGTTATAAGGGTATAATGGTAGTAAAGACTGTATATTTAACGTTAATCAACTGAGAAAGGGAGTTGATATTGTGGTGATATCGTGGAGTCATTCTAATTTGCTGCGATTATAGTTTGAGATTAGTCTGTATTACAAGGGTATAATGGCAGTAAAGACTGCATCTTTAATGATAATTGACTGACCAAGGGGCTGATGGTATGTGTTTTGGTGATCTTAGACTCTTAGTATGTGTTTTGGTGGTCTTGATCTTACATTAATCTGTGAGCTTGATGTGTTAATGCTGTTGAAGGGGGAAAAGGAAGAACAATGAAGTTTGATTCTTTTTTGGACTGATTTAACTTCCAAACTTGTTGTGAGGCTTTAAGTAATTGAGACATACTTCACTTATTTGTTCAACCTCACTACCTACATTCCTTTTATGATCTAAAAAAGCTCATTTTGCACTATTGCGTTGAGAGTTTTACTGAGTGGGATGTGAATGAATAGAGGCAGTCAGTTGGCATTCAACATGTCATTCTTCTGCCTTTCCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCTCTTAATGCCCCCAACGGATCTTAGAGTTTTTTTTGCGCTTTTTTGCTTTAGGCTACACTGAATGAAAGGCACACCTTCAATTAGGCATACATAATTTTGCAGGTGATTGTGTGTAAGATATTATTCACTTATTGGTATTATGCTACACGTCTTTACTGGGATGTAGAATTGTATCAATTGTAACTGCATGCAAATATCATTCACCTAGTTTCTTCTGTACAGTTAGCAGTGCAATTTAAGCCAAACTTGTGTTCATCCTATGTCTTTCAGAGTTCAGTAAACCTGAGCCCTGTCTTCTCACAAGAAACAGATTTCCTATTTTTTCTGCTACATGCAAGCATCATATTAACTATTTCAAGAAAGGAGAATCGTGAAATCAGATATTTAGCCAGACATATCTGTCTTTACGCTGGTTTCAGATTCAGCTTTACTGATTTGCTTGGCCAAATCTGCAATCTCTTTTATTTTTTGTGAGCTGTAACCTTTATGTGATGGCCGTGATTAGGATTCATAAACTTCGTCATTTTGGTGATTAGTATTCATGTACTCTCTTCATTTTGGCAAATCGGGTATTTTGAATTATTTTGGTGATTGATTATGAAGAAATGAGGCTTTCATGCATCTTGAATCTTTCTTGAACATGCTTCTATCAGATATCAGGCTGTTCTCATTATCTTATCCTTCTGTTAACTCGAGTACTTTCTCTTTCAGTCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGG-ATTGTGTAGCCACC-ATAGAACTTACTTTATCTGGTGCTTATCATAACTTTTTTTTTTTAATAATCGAGAAATTTTTGAGGGCCAGACGTTAGAGTACTAATATTAAACTCAGCTTACGATTCATAGAGTAAATATTCCATTTTAGAGCAATAGTATGATGTCGCGTAAAGCTTGCTACTCTTTTTGTCCGAGGTATATCAAATAAAATTTCTGATTTCACCATTGATTATAAAATATCTCTTTAGAAAAGAGAAA</genome_strand>
        <mrna_strand>GAATACTCAGATCTCAA-TTTTCTTCTCAATTCAG.........................................................................................................................................................................................................GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGCATTGTGTAGCCCCCNATAGAACTTACTTTATCTGGTGCTTATCATAACTTTTTTTTTTTAATAATCGAGAAATTTTTGAGGGCCA.................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541350" ref_strand="+" ref_description="SGN-E541350 [TUS-62-B13]">
      <seq>gaatactcagatctcaatttttctcttcaattcaggtttaaaataaaaaatgggtgaaccaaagaagcaacaaccagttttcactaaggttgatcagcttaggccaacggctactgggctaaatcttactgtgaaggtggttaatacaaagatggtagtgccaaggggaaatcaaggccgtcagatgcgattggctgaatgcttggttggtgatgagacagggatgatcattttcactgctagaaatgatcaagtcgacatgatgaaagaaggtgctactgtaattctgcgcaatgcaaaaatagatatgttcaagggatcaatgaggcttgcagtggacaggtggggacgtattgaagttaccgaacctgctagtttctctgtcaaggaagacagtaatctgtctcttatcgagtttgaacaagtgactgttgttgaacagtaactcaagacagcccatcgctatgataatgtcccgtttgcagagagtataagtaagtttggttctttagggatatgctaatgtcccttcatcagttaaagtaaaaactacttgttttgttaagtcagaaagttctcttcttttttttgtagtggaagtttttgtagatagcaaggtatgtagctgcaataaacagtagtgtacaacttgcttgtttatttatttggaaggattgtgtagccaccatagaacttactttatctggtgcttatcataactttttttttttaataatcgagaaatttttgagggccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8499" stop="5191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8199" g_stop="8165" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7963" g_stop="7745" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="254" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5995" g_stop="5484" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="766" r_length="512" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E541350" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8199" e_stop="8165"/>
          <exon e_start="7963" e_stop="7745"/>
          <exon e_start="5995" e_stop="5484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACTCAGATCTCAATTTTTCTCTTCAATTCAGGTAAATCAAAAACTAAATCTTCAAAATTATTACTATTCAATATATTAAATTCAAGAATTTTTATGTTTTCTGTTAGTCTGTAGCTTTCTATGGTGGTGTATTGATCAAAGATTTGTTGTGGTTTATGAATGTGTTTGAGTTTATTTTTCAATTTATTGATTTGGGTATGTGTAAAGATTTGATCTTTTTGGATTTTGTTAGGTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAGGTATTGTCTTTGGTTTCAATTTAGCATTCAGTATCTATCCATAAAAAGAGAGAATCCGGATTTGTAGTAGTAACATTTTCAAGGGGCTCACAGTGGTGTGTATTTCTTGTATCCATTCTAACTTGCTGTGATATCTGTTTTGGGATTAATATTGATTATAAGGGTTTAGGGGAATCCTAGTAGCTCAGTTGGTTGACTAGATGGATTTTTAGATTAATCGTGGTTATAAGGGTATAGCATATGTTGCTTGGACACTTCAAAAAATGTGTGTCGGATACTCCAAAAGTAGTGCTCTTTTGAAGGATCCGACGTGGTCGTGGCAATATTTTTAGAGAGTCCGAGCAACACGGGGTATGAGAATCTTAGTAACTCAATTGGTTGATTGCCTGAAATTTTTCCTTGTGGGGACTTGATTCCCCATCTTGTAATTCCCTCCCCCTTTTCCCTGTAACTACCCCCAATTTTTTTAAAAAGGGTTATAAGGGTATAATGGTAGTAAAGACTGTATATTTAACGTTAATCAACTGAGAAAGGGAGTTGATATTGTGGTGATATCGTGGAGTCATTCTAATTTGCTGCGATTATAGTTTGAGATTAGTCTGTATTACAAGGGTATAATGGCAGTAAAGACTGCATCTTTAATGATAATTGACTGACCAAGGGGCTGATGGTATGTGTTTTGGTGATCTTAGACTCTTAGTATGTGTTTTGGTGGTCTTGATCTTACATTAATCTGTGAGCTTGATGTGTTAATGCTGTTGAAGGGGGAAAAGGAAGAACAATGAAGTTTGATTCTTTTTTGGACTGATTTAACTTCCAAACTTGTTGTGAGGCTTTAAGTAATTGAGACATACTTCACTTATTTGTTCAACCTCACTACCTACATTCCTTTTATGATCTAAAAAAGCTCATTTTGCACTATTGCGTTGAGAGTTTTACTGAGTGGGATGTGAATGAATAGAGGCAGTCAGTTGGCATTCAACATGTCATTCTTCTGCCTTTCCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCTCTTAATGCCCCCAACGGATCTTAGAGTTTTTTTTGCGCTTTTTTGCTTTAGGCTACACTGAATGAAAGGCACACCTTCAATTAGGCATACATAATTTTGCAGGTGATTGTGTGTAAGATATTATTCACTTATTGGTATTATGCTACACGTCTTTACTGGGATGTAGAATTGTATCAATTGTAACTGCATGCAAATATCATTCACCTAGTTTCTTCTGTACAGTTAGCAGTGCAATTTAAGCCAAACTTGTGTTCATCCTATGTCTTTCAGAGTTCAGTAAACCTGAGCCCTGTCTTCTCACAAGAAACAGATTTCCTATTTTTTCTGCTACATGCAAGCATCATATTAACTATTTCAAGAAAGGAGAATCGTGAAATCAGATATTTAGCCAGACATATCTGTCTTTACGCTGGTTTCAGATTCAGCTTTACTGATTTGCTTGGCCAAATCTGCAATCTCTTTTATTTTTTGTGAGCTGTAACCTTTATGTGATGGCCGTGATTAGGATTCATAAACTTCGTCATTTTGGTGATTAGTATTCATGTACTCTCTTCATTTTGGCAAATCGGGTATTTTGAATTATTTTGGTGATTGATTATGAAGAAATGAGGCTTTCATGCATCTTGAATCTTTCTTGAACATGCTTCTATCAGATATCAGGCTGTTCTCATTATCTTATCCTTCTGTTAACTCGAGTACTTTCTCTTTCAGTCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTTATCTGGTGCTTATCATAACTTTTTTTTTTTAATAATCGAGAAATTTTTGAGGGCCAGACGTTAGA</genome_strand>
        <mrna_strand>GAATACTCAGATCTCAATTTTTCTCTTCAATTCAG.........................................................................................................................................................................................................GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTTATCTGGTGCTTATCATAACTTTTTTTTTTTAATAATCGAGAAATTTTTGAGGGCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690378" ref_strand="+" ref_description="SGN-E690378 [LH_Ea03F16]">
      <seq>cattatatgttcaagggatcaatgaggcttgcagtggacaggtggggacgtattgaagttaccgaacctgctagtttctctgtcaaggaagacagtaatctgtcccttatcgagtttgaacaagtgactgttgttgaacagtaactcaagaaagcccatcgctatgataatgtcccgtttgcagagagtataagtaagtttggttctttagggctatactaatgtggctctttatcagttaagtaaaaactacttgttttgttaagtcagaaagtccttttttttttgtagtggaagtttttgtagatagcaaggtatgtagctgcaataaacagtagtgtacaacttgcttgtttatttatttggaaggattgtgtagacaccatagaacttactttatctggtgcttatcataactttttttttaataatcgagaaattttcaaaggccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="6244" stop="5191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5949" g_stop="5490" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="456" polyA_stop="478"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E690378" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5949" e_stop="5490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGT--CCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTTATCTGGTGCTTATCATAACTTTTTTTTTTTAATAATCGAGAAATTTTTGAGGGCCAGAC</genome_strand>
        <mrna_strand>CAT-TATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCCCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGAAAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGCTATACTAATGTGGCTCTTTATCAGTT-AAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAG-TC-CTT-TTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGACACCATAGAACTTACTTTATCTGGTGCTTATCATAAC--TTTTTTTTTAATAATCGAGAAATTTTCAAAGGCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718675" ref_strand="+" ref_description="SGN-E718675 [FC05BG04]">
      <seq>aatactcagatctcaatttttctcttcaattcaggtttaaaataaaaaatgggtgaaccaaagaagcaacaaccagttttcactaaggttgatcagcttaggccaacggctactgggctaaatcttactgtgaaggtggttaatacaaagatggtagtgccaaggggaaatcaaggccgtcagatgcgattggctgaatgcttggttggtgatgagacagggatgatcattttcactgctagaaatgatcaagtcgacatgatgaaagaaggtgctactgtaattctgcgcaatgcaaaaatagatatgttcaagggatcaatgaggcttgcagtggacaggtggggacgtattgaagttaccgaacctgctagtttctctgtcaaggaagacagtaatctgtctcttatcgagtttgaacaagtgactgttgttgaacagtaactcaagacagcccatcgctatgataatgtcccgtttgcagagagtataagtaagtttggttctttagggatatgctaatgtcccttcatcagttaaagtaaaaactacttgttttgttaagtcagaaagttctcttcttttttttgtagtgaaagtttttgtagatagcaaggtatgtagctgcaataaacagtagtgtacaacttgcttgtttatttatttggaaggattgtgtagccaccatagaacttactttatctggtgcttatcataacttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8498" stop="5221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8198" g_stop="8165" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7963" g_stop="7745" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="253" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5995" g_stop="5521" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="728" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E718675" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8198" e_stop="8165"/>
          <exon e_start="7963" e_stop="7745"/>
          <exon e_start="5995" e_stop="5521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTCAGATCTCAATTTTTCTCTTCAATTCAGGTAAATCAAAAACTAAATCTTCAAAATTATTACTATTCAATATATTAAATTCAAGAATTTTTATGTTTTCTGTTAGTCTGTAGCTTTCTATGGTGGTGTATTGATCAAAGATTTGTTGTGGTTTATGAATGTGTTTGAGTTTATTTTTCAATTTATTGATTTGGGTATGTGTAAAGATTTGATCTTTTTGGATTTTGTTAGGTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAGGTATTGTCTTTGGTTTCAATTTAGCATTCAGTATCTATCCATAAAAAGAGAGAATCCGGATTTGTAGTAGTAACATTTTCAAGGGGCTCACAGTGGTGTGTATTTCTTGTATCCATTCTAACTTGCTGTGATATCTGTTTTGGGATTAATATTGATTATAAGGGTTTAGGGGAATCCTAGTAGCTCAGTTGGTTGACTAGATGGATTTTTAGATTAATCGTGGTTATAAGGGTATAGCATATGTTGCTTGGACACTTCAAAAAATGTGTGTCGGATACTCCAAAAGTAGTGCTCTTTTGAAGGATCCGACGTGGTCGTGGCAATATTTTTAGAGAGTCCGAGCAACACGGGGTATGAGAATCTTAGTAACTCAATTGGTTGATTGCCTGAAATTTTTCCTTGTGGGGACTTGATTCCCCATCTTGTAATTCCCTCCCCCTTTTCCCTGTAACTACCCCCAATTTTTTTAAAAAGGGTTATAAGGGTATAATGGTAGTAAAGACTGTATATTTAACGTTAATCAACTGAGAAAGGGAGTTGATATTGTGGTGATATCGTGGAGTCATTCTAATTTGCTGCGATTATAGTTTGAGATTAGTCTGTATTACAAGGGTATAATGGCAGTAAAGACTGCATCTTTAATGATAATTGACTGACCAAGGGGCTGATGGTATGTGTTTTGGTGATCTTAGACTCTTAGTATGTGTTTTGGTGGTCTTGATCTTACATTAATCTGTGAGCTTGATGTGTTAATGCTGTTGAAGGGGGAAAAGGAAGAACAATGAAGTTTGATTCTTTTTTGGACTGATTTAACTTCCAAACTTGTTGTGAGGCTTTAAGTAATTGAGACATACTTCACTTATTTGTTCAACCTCACTACCTACATTCCTTTTATGATCTAAAAAAGCTCATTTTGCACTATTGCGTTGAGAGTTTTACTGAGTGGGATGTGAATGAATAGAGGCAGTCAGTTGGCATTCAACATGTCATTCTTCTGCCTTTCCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCTCTTAATGCCCCCAACGGATCTTAGAGTTTTTTTTGCGCTTTTTTGCTTTAGGCTACACTGAATGAAAGGCACACCTTCAATTAGGCATACATAATTTTGCAGGTGATTGTGTGTAAGATATTATTCACTTATTGGTATTATGCTACACGTCTTTACTGGGATGTAGAATTGTATCAATTGTAACTGCATGCAAATATCATTCACCTAGTTTCTTCTGTACAGTTAGCAGTGCAATTTAAGCCAAACTTGTGTTCATCCTATGTCTTTCAGAGTTCAGTAAACCTGAGCCCTGTCTTCTCACAAGAAACAGATTTCCTATTTTTTCTGCTACATGCAAGCATCATATTAACTATTTCAAGAAAGGAGAATCGTGAAATCAGATATTTAGCCAGACATATCTGTCTTTACGCTGGTTTCAGATTCAGCTTTACTGATTTGCTTGGCCAAATCTGCAATCTCTTTTATTTTTTGTGAGCTGTAACCTTTATGTGATGGCCGTGATTAGGATTCATAAACTTCGTCATTTTGGTGATTAGTATTCATGTACTCTCTTCATTTTGGCAAATCGGGTATTTTGAATTATTTTGGTGATTGATTATGAAGAAATGAGGCTTTCATGCATCTTGAATCTTTCTTGAACATGCTTCTATCAGATATCAGGCTGTTCTCATTATCTTATCCTTCTGTTAACTCGAGTACTTTCTCTTTCAGTCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTTATCTGGTGCTTATCATAACTTTTTTTTT</genome_strand>
        <mrna_strand>AATACTCAGATCTCAATTTTTCTCTTCAATTCAG.........................................................................................................................................................................................................GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGAAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTTATCTGGTGCTTATCATAACTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303543" ref_strand="+" ref_description="SGN-E303543 [cLEX-2-F24]">
      <seq>tcagatgcgattggctgaatgcttggttggtgatgagacagggatgatcattttcactgctagaaatgatcaagtcgacatgatgaaagaaggtgctactgtaattctgcgcaatgcaaaaatagatatgttcaagggatcaatgaggcttgcagtggacaggtggggacgtattgaagttaccgaacctgctagtttctctgtcaaggaagacagtaatctgtctcttatcgagtttgaacaagtgactgttgttgaacagtaactcaagacagcccatcgctatgataatgtcccgtttgcagagagtataagtaagtttggttctttagggatatgctaatgtcccttcatcagttaaagtaaaaactacttgttttgttaagtcagaaagttctcttcttttttttgtagtggaagtttttgtagatagcaaggtatgtagctgcaataaacagtagtgtacaacttgcttgtttatttatttggaaggattgtgtagccaccatagaacttactttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8118" stop="5248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7818" g_stop="7745" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5995" g_stop="5549" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="521" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="545"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E303543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7818" e_stop="7745"/>
          <exon e_start="5995" e_stop="5549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAGGTATTGTCTTTGGTTTCAATTTAGCATTCAGTATCTATCCATAAAAAGAGAGAATCCGGATTTGTAGTAGTAACATTTTCAAGGGGCTCACAGTGGTGTGTATTTCTTGTATCCATTCTAACTTGCTGTGATATCTGTTTTGGGATTAATATTGATTATAAGGGTTTAGGGGAATCCTAGTAGCTCAGTTGGTTGACTAGATGGATTTTTAGATTAATCGTGGTTATAAGGGTATAGCATATGTTGCTTGGACACTTCAAAAAATGTGTGTCGGATACTCCAAAAGTAGTGCTCTTTTGAAGGATCCGACGTGGTCGTGGCAATATTTTTAGAGAGTCCGAGCAACACGGGGTATGAGAATCTTAGTAACTCAATTGGTTGATTGCCTGAAATTTTTCCTTGTGGGGACTTGATTCCCCATCTTGTAATTCCCTCCCCCTTTTCCCTGTAACTACCCCCAATTTTTTTAAAAAGGGTTATAAGGGTATAATGGTAGTAAAGACTGTATATTTAACGTTAATCAACTGAGAAAGGGAGTTGATATTGTGGTGATATCGTGGAGTCATTCTAATTTGCTGCGATTATAGTTTGAGATTAGTCTGTATTACAAGGGTATAATGGCAGTAAAGACTGCATCTTTAATGATAATTGACTGACCAAGGGGCTGATGGTATGTGTTTTGGTGATCTTAGACTCTTAGTATGTGTTTTGGTGGTCTTGATCTTACATTAATCTGTGAGCTTGATGTGTTAATGCTGTTGAAGGGGGAAAAGGAAGAACAATGAAGTTTGATTCTTTTTTGGACTGATTTAACTTCCAAACTTGTTGTGAGGCTTTAAGTAATTGAGACATACTTCACTTATTTGTTCAACCTCACTACCTACATTCCTTTTATGATCTAAAAAAGCTCATTTTGCACTATTGCGTTGAGAGTTTTACTGAGTGGGATGTGAATGAATAGAGGCAGTCAGTTGGCATTCAACATGTCATTCTTCTGCCTTTCCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCTCTTAATGCCCCCAACGGATCTTAGAGTTTTTTTTGCGCTTTTTTGCTTTAGGCTACACTGAATGAAAGGCACACCTTCAATTAGGCATACATAATTTTGCAGGTGATTGTGTGTAAGATATTATTCACTTATTGGTATTATGCTACACGTCTTTACTGGGATGTAGAATTGTATCAATTGTAACTGCATGCAAATATCATTCACCTAGTTTCTTCTGTACAGTTAGCAGTGCAATTTAAGCCAAACTTGTGTTCATCCTATGTCTTTCAGAGTTCAGTAAACCTGAGCCCTGTCTTCTCACAAGAAACAGATTTCCTATTTTTTCTGCTACATGCAAGCATCATATTAACTATTTCAAGAAAGGAGAATCGTGAAATCAGATATTTAGCCAGACATATCTGTCTTTACGCTGGTTTCAGATTCAGCTTTACTGATTTGCTTGGCCAAATCTGCAATCTCTTTTATTTTTTGTGAGCTGTAACCTTTATGTGATGGCCGTGATTAGGATTCATAAACTTCGTCATTTTGGTGATTAGTATTCATGTACTCTCTTCATTTTGGCAAATCGGGTATTTTGAATTATTTTGGTGATTGATTATGAAGAAATGAGGCTTTCATGCATCTTGAATCTTTCTTGAACATGCTTCTATCAGATATCAGGCTGTTCTCATTATCTTATCCTTCTGTTAACTCGAGTACTTTCTCTTTCAGTCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTT</genome_strand>
        <mrna_strand>TCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210754" ref_strand="+" ref_description="SGN-E210754 [cLEC-68-O11]">
      <seq>tgatatttagttctctcgtcaaaaccaaagccccattctgttttcctacttccaatctgaatctccagaagaatactcagatctcaatttttctcttcaattcaggtttaaaataaaaaatgggtgaaccaaagaagcaacaaccagttttcactaaggttgatcagcttaagccaacggctactgggctaaatcttactgtgaaggtggttaatacaaagatggtagtgccaaggggaaatcaaggccgtcagatgcgattggctgaatgcttggttggtgatgagacagggatgatcattttcactgctagaaatgatcaagtcgacatgatgaaagaaggtgctactgtaattctgcgcaatgcaaaaatagatatgttcaagggatcaatgaggcttgcagtggacaggtggggacgtattgaagttaccgaacctgctagtttctctgtcaaggaagacagtaatctgtctcttatcgagtttgaacaagtgactgttgttgaacagtaactcaagacagcccatcgctatgataatgtcccgtttgcagagagtataagtaagtttggttctttaaggatatgctaatgtcccttcatcagttaaagtaaaaactacttgttttgttaagtcaaaaaagtctcttcctttttttgtagtggaagttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8569" stop="5345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8269" g_stop="8165" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7963" g_stop="7745" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="324" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5995" g_stop="5645" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="675" r_length="351" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E210754" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8269" e_stop="8165"/>
          <exon e_start="7963" e_stop="7745"/>
          <exon e_start="5995" e_stop="5645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTTAGTTCTCTCGTCAAAACCAAAGCCCCATTCTGTTTTCCTACTTCCAATCTGAATCTCCAGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAGGTAAATCAAAAACTAAATCTTCAAAATTATTACTATTCAATATATTAAATTCAAGAATTTTTATGTTTTCTGTTAGTCTGTAGCTTTCTATGGTGGTGTATTGATCAAAGATTTGTTGTGGTTTATGAATGTGTTTGAGTTTATTTTTCAATTTATTGATTTGGGTATGTGTAAAGATTTGATCTTTTTGGATTTTGTTAGGTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAGGTATTGTCTTTGGTTTCAATTTAGCATTCAGTATCTATCCATAAAAAGAGAGAATCCGGATTTGTAGTAGTAACATTTTCAAGGGGCTCACAGTGGTGTGTATTTCTTGTATCCATTCTAACTTGCTGTGATATCTGTTTTGGGATTAATATTGATTATAAGGGTTTAGGGGAATCCTAGTAGCTCAGTTGGTTGACTAGATGGATTTTTAGATTAATCGTGGTTATAAGGGTATAGCATATGTTGCTTGGACACTTCAAAAAATGTGTGTCGGATACTCCAAAAGTAGTGCTCTTTTGAAGGATCCGACGTGGTCGTGGCAATATTTTTAGAGAGTCCGAGCAACACGGGGTATGAGAATCTTAGTAACTCAATTGGTTGATTGCCTGAAATTTTTCCTTGTGGGGACTTGATTCCCCATCTTGTAATTCCCTCCCCCTTTTCCCTGTAACTACCCCCAATTTTTTTAAAAAGGGTTATAAGGGTATAATGGTAGTAAAGACTGTATATTTAACGTTAATCAACTGAGAAAGGGAGTTGATATTGTGGTGATATCGTGGAGTCATTCTAATTTGCTGCGATTATAGTTTGAGATTAGTCTGTATTACAAGGGTATAATGGCAGTAAAGACTGCATCTTTAATGATAATTGACTGACCAAGGGGCTGATGGTATGTGTTTTGGTGATCTTAGACTCTTAGTATGTGTTTTGGTGGTCTTGATCTTACATTAATCTGTGAGCTTGATGTGTTAATGCTGTTGAAGGGGGAAAAGGAAGAACAATGAAGTTTGATTCTTTTTTGGACTGATTTAACTTCCAAACTTGTTGTGAGGCTTTAAGTAATTGAGACATACTTCACTTATTTGTTCAACCTCACTACCTACATTCCTTTTATGATCTAAAAAAGCTCATTTTGCACTATTGCGTTGAGAGTTTTACTGAGTGGGATGTGAATGAATAGAGGCAGTCAGTTGGCATTCAACATGTCATTCTTCTGCCTTTCCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCTCTTAATGCCCCCAACGGATCTTAGAGTTTTTTTTGCGCTTTTTTGCTTTAGGCTACACTGAATGAAAGGCACACCTTCAATTAGGCATACATAATTTTGCAGGTGATTGTGTGTAAGATATTATTCACTTATTGGTATTATGCTACACGTCTTTACTGGGATGTAGAATTGTATCAATTGTAACTGCATGCAAATATCATTCACCTAGTTTCTTCTGTACAGTTAGCAGTGCAATTTAAGCCAAACTTGTGTTCATCCTATGTCTTTCAGAGTTCAGTAAACCTGAGCCCTGTCTTCTCACAAGAAACAGATTTCCTATTTTTTCTGCTACATGCAAGCATCATATTAACTATTTCAAGAAAGGAGAATCGTGAAATCAGATATTTAGCCAGACATATCTGTCTTTACGCTGGTTTCAGATTCAGCTTTACTGATTTGCTTGGCCAAATCTGCAATCTCTTTTATTTTTTGTGAGCTGTAACCTTTATGTGATGGCCGTGATTAGGATTCATAAACTTCGTCATTTTGGTGATTAGTATTCATGTACTCTCTTCATTTTGGCAAATCGGGTATTTTGAATTATTTTGGTGATTGATTATGAAGAAATGAGGCTTTCATGCATCTTGAATCTTTCTTGAACATGCTTCTATCAGATATCAGGCTGTTCTCATTATCTTATCCTTCTGTTAACTCGAGTACTTTCTCTTTCAGTCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTT</genome_strand>
        <mrna_strand>TGATATTTAGTTCTCTCGTCAAAACCAAAGCCCCATTCTGTTTTCCTACTTCCAATCTGAATCTCCAGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAG.........................................................................................................................................................................................................GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAAGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAAGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAAAAAAGTCTCTTCCTTTTTTTGTAGTGGAAGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293675" ref_strand="+" ref_description="SGN-E293675 [cLET-21-M3]">
      <seq>agaagaatactcagatctcaatttttctcttcaattcaggtttaaaataaaaaatgggtgaaccaaagaagcaacaaccagttttcactaaggttgatcagcttaggccaacggctactgggctaaatcttactgtgaaggtggttaatacaaagatggtagtgccaaggggaaatcaaggccgtcagatgcgattggctgaatgcttggttggtgatgagacagggatgatcattttcactgctagaaatgatcaagtcgacatgatgaaagaaggtgctactgtaattctgcgcaatgcaaaaatagatatgttcaagggatcaatgaggcttgcagtggacaggtggggacgtattgaagttaccgaacctgctagtttctctgtcaaggaagacagtaatctgtctcttatcgagtttgaacaagtgactgttgttgaacagtaactcaagacagcccatcgctatgataatgtcccgtttgcagagagtataagtaagtttggttctttagggatatgctaatgtcccttcatcagttaaagtaaaaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8503" stop="5397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8203" g_stop="8165" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7963" g_stop="7745" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="258" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5995" g_stop="5697" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="557" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E293675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8203" e_stop="8165"/>
          <exon e_start="7963" e_stop="7745"/>
          <exon e_start="5995" e_stop="5697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAGGTAAATCAAAAACTAAATCTTCAAAATTATTACTATTCAATATATTAAATTCAAGAATTTTTATGTTTTCTGTTAGTCTGTAGCTTTCTATGGTGGTGTATTGATCAAAGATTTGTTGTGGTTTATGAATGTGTTTGAGTTTATTTTTCAATTTATTGATTTGGGTATGTGTAAAGATTTGATCTTTTTGGATTTTGTTAGGTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAGGTATTGTCTTTGGTTTCAATTTAGCATTCAGTATCTATCCATAAAAAGAGAGAATCCGGATTTGTAGTAGTAACATTTTCAAGGGGCTCACAGTGGTGTGTATTTCTTGTATCCATTCTAACTTGCTGTGATATCTGTTTTGGGATTAATATTGATTATAAGGGTTTAGGGGAATCCTAGTAGCTCAGTTGGTTGACTAGATGGATTTTTAGATTAATCGTGGTTATAAGGGTATAGCATATGTTGCTTGGACACTTCAAAAAATGTGTGTCGGATACTCCAAAAGTAGTGCTCTTTTGAAGGATCCGACGTGGTCGTGGCAATATTTTTAGAGAGTCCGAGCAACACGGGGTATGAGAATCTTAGTAACTCAATTGGTTGATTGCCTGAAATTTTTCCTTGTGGGGACTTGATTCCCCATCTTGTAATTCCCTCCCCCTTTTCCCTGTAACTACCCCCAATTTTTTTAAAAAGGGTTATAAGGGTATAATGGTAGTAAAGACTGTATATTTAACGTTAATCAACTGAGAAAGGGAGTTGATATTGTGGTGATATCGTGGAGTCATTCTAATTTGCTGCGATTATAGTTTGAGATTAGTCTGTATTACAAGGGTATAATGGCAGTAAAGACTGCATCTTTAATGATAATTGACTGACCAAGGGGCTGATGGTATGTGTTTTGGTGATCTTAGACTCTTAGTATGTGTTTTGGTGGTCTTGATCTTACATTAATCTGTGAGCTTGATGTGTTAATGCTGTTGAAGGGGGAAAAGGAAGAACAATGAAGTTTGATTCTTTTTTGGACTGATTTAACTTCCAAACTTGTTGTGAGGCTTTAAGTAATTGAGACATACTTCACTTATTTGTTCAACCTCACTACCTACATTCCTTTTATGATCTAAAAAAGCTCATTTTGCACTATTGCGTTGAGAGTTTTACTGAGTGGGATGTGAATGAATAGAGGCAGTCAGTTGGCATTCAACATGTCATTCTTCTGCCTTTCCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCTCTTAATGCCCCCAACGGATCTTAGAGTTTTTTTTGCGCTTTTTTGCTTTAGGCTACACTGAATGAAAGGCACACCTTCAATTAGGCATACATAATTTTGCAGGTGATTGTGTGTAAGATATTATTCACTTATTGGTATTATGCTACACGTCTTTACTGGGATGTAGAATTGTATCAATTGTAACTGCATGCAAATATCATTCACCTAGTTTCTTCTGTACAGTTAGCAGTGCAATTTAAGCCAAACTTGTGTTCATCCTATGTCTTTCAGAGTTCAGTAAACCTGAGCCCTGTCTTCTCACAAGAAACAGATTTCCTATTTTTTCTGCTACATGCAAGCATCATATTAACTATTTCAAGAAAGGAGAATCGTGAAATCAGATATTTAGCCAGACATATCTGTCTTTACGCTGGTTTCAGATTCAGCTTTACTGATTTGCTTGGCCAAATCTGCAATCTCTTTTATTTTTTGTGAGCTGTAACCTTTATGTGATGGCCGTGATTAGGATTCATAAACTTCGTCATTTTGGTGATTAGTATTCATGTACTCTCTTCATTTTGGCAAATCGGGTATTTTGAATTATTTTGGTGATTGATTATGAAGAAATGAGGCTTTCATGCATCTTGAATCTTTCTTGAACATGCTTCTATCAGATATCAGGCTGTTCTCATTATCTTATCCTTCTGTTAACTCGAGTACTTTCTCTTTCAGTCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTAC</genome_strand>
        <mrna_strand>AGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAG.........................................................................................................................................................................................................GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228070" ref_strand="+" ref_description="SGN-E228070 [cLED-2-B5]">
      <seq>tccagaagaatactcagatctcaatttttctcttcaattcaggtttaaaataaaaaatgggtgaaccaaagaagcaacaaccagttttcactaaggttgatcagcttaggccaacggctactgggctaaatcttactgtgaaggtggttaatacaaagatggtagtgccaaggggaaatcaaggccgtcagatgcgattggctgaatgcttggttggtgatgagacagggatgatcattttcactgctagaaatgatcaagtcgacatgatgaaagaaagtgctactgtaatttctgcgcaatgcaaaaatagatatgttcaagggatcaatgaggcttgcagtggacaggtggggacgtattgaagttaccgaacctgctagtttctctgtcaaggaagacagtaatctgtctcttatcgagtttgaacaagtgactgttgttgaacagtaactcaagacagcccatcgctatgataatgtcccgtttgcagagagtataagttagtttggttctttagggatatgctaatgtcccttcatcagttaaagtaaaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8506" stop="5398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8206" g_stop="8165" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7963" g_stop="7745" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="261" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5995" g_stop="5698" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="560" r_length="299" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E228070" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8206" e_stop="8165"/>
          <exon e_start="7963" e_stop="7745"/>
          <exon e_start="5995" e_stop="5698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAGGTAAATCAAAAACTAAATCTTCAAAATTATTACTATTCAATATATTAAATTCAAGAATTTTTATGTTTTCTGTTAGTCTGTAGCTTTCTATGGTGGTGTATTGATCAAAGATTTGTTGTGGTTTATGAATGTGTTTGAGTTTATTTTTCAATTTATTGATTTGGGTATGTGTAAAGATTTGATCTTTTTGGATTTTGTTAGGTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAGGTATTGTCTTTGGTTTCAATTTAGCATTCAGTATCTATCCATAAAAAGAGAGAATCCGGATTTGTAGTAGTAACATTTTCAAGGGGCTCACAGTGGTGTGTATTTCTTGTATCCATTCTAACTTGCTGTGATATCTGTTTTGGGATTAATATTGATTATAAGGGTTTAGGGGAATCCTAGTAGCTCAGTTGGTTGACTAGATGGATTTTTAGATTAATCGTGGTTATAAGGGTATAGCATATGTTGCTTGGACACTTCAAAAAATGTGTGTCGGATACTCCAAAAGTAGTGCTCTTTTGAAGGATCCGACGTGGTCGTGGCAATATTTTTAGAGAGTCCGAGCAACACGGGGTATGAGAATCTTAGTAACTCAATTGGTTGATTGCCTGAAATTTTTCCTTGTGGGGACTTGATTCCCCATCTTGTAATTCCCTCCCCCTTTTCCCTGTAACTACCCCCAATTTTTTTAAAAAGGGTTATAAGGGTATAATGGTAGTAAAGACTGTATATTTAACGTTAATCAACTGAGAAAGGGAGTTGATATTGTGGTGATATCGTGGAGTCATTCTAATTTGCTGCGATTATAGTTTGAGATTAGTCTGTATTACAAGGGTATAATGGCAGTAAAGACTGCATCTTTAATGATAATTGACTGACCAAGGGGCTGATGGTATGTGTTTTGGTGATCTTAGACTCTTAGTATGTGTTTTGGTGGTCTTGATCTTACATTAATCTGTGAGCTTGATGTGTTAATGCTGTTGAAGGGGGAAAAGGAAGAACAATGAAGTTTGATTCTTTTTTGGACTGATTTAACTTCCAAACTTGTTGTGAGGCTTTAAGTAATTGAGACATACTTCACTTATTTGTTCAACCTCACTACCTACATTCCTTTTATGATCTAAAAAAGCTCATTTTGCACTATTGCGTTGAGAGTTTTACTGAGTGGGATGTGAATGAATAGAGGCAGTCAGTTGGCATTCAACATGTCATTCTTCTGCCTTTCCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCTCTTAATGCCCCCAACGGATCTTAGAGTTTTTTTTGCGCTTTTTTGCTTTAGGCTACACTGAATGAAAGGCACACCTTCAATTAGGCATACATAATTTTGCAGGTGATTGTGTGTAAGATATTATTCACTTATTGGTATTATGCTACACGTCTTTACTGGGATGTAGAATTGTATCAATTGTAACTGCATGCAAATATCATTCACCTAGTTTCTTCTGTACAGTTAGCAGTGCAATTTAAGCCAAACTTGTGTTCATCCTATGTCTTTCAGAGTTCAGTAAACCTGAGCCCTGTCTTCTCACAAGAAACAGATTTCCTATTTTTTCTGCTACATGCAAGCATCATATTAACTATTTCAAGAAAGGAGAATCGTGAAATCAGATATTTAGCCAGACATATCTGTCTTTACGCTGGTTTCAGATTCAGCTTTACTGATTTGCTTGGCCAAATCTGCAATCTCTTTTATTTTTTGTGAGCTGTAACCTTTATGTGATGGCCGTGATTAGGATTCATAAACTTCGTCATTTTGGTGATTAGTATTCATGTACTCTCTTCATTTTGGCAAATCGGGTATTTTGAATTATTTTGGTGATTGATTATGAAGAAATGAGGCTTTCATGCATCTTGAATCTTTCTTGAACATGCTTCTATCAGATATCAGGCTGTTCTCATTATCTTATCCTTCTGTTAACTCGAGTACTTTCTCTTTCAGTCGACATGATGAAAGAAGGTGCTACTGTAA-TTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTA</genome_strand>
        <mrna_strand>TCCAGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAG.........................................................................................................................................................................................................GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACATGATGAAAGAAAGTGCTACTGTAATTTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTTAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240413" ref_strand="+" ref_description="SGN-E240413 [cLED-25-P3]">
      <seq>tccagaagaatactcagatctcaatttttctcttcaattcaggtttaaaataaaaaatgggtgaaccaaagaagcaacaaccagttttcactaaggttgatcagcttaggccaacggctactgggctaaatcttactgtgaaggtggttaatacaaagatggtagtgccaaggggaaatcaaggccgtcagatgcgattggctgaatgcttggttggtgatgagacagggatgatcattttcactgctagaaatgatcaagtcgacatgatgaaagaaggtgctactgtaattctgcgcaatgcaaaaatagatatgttcaagggatcaatgaggcttgcagtggacaggtggggacgtattgaagttaccgaacctgctagtttctctgtcaaggaagacagtaatctgtctcttatcgagtttgaacaagtgactgttgttgaacagtaactcaagacagcccatcgctatgataatgtcccgtttgcagagagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8506" stop="5459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8206" g_stop="8165" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7963" g_stop="7745" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="261" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5995" g_stop="5759" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="498" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E240413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8206" e_stop="8165"/>
          <exon e_start="7963" e_stop="7745"/>
          <exon e_start="5995" e_stop="5759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAGGTAAATCAAAAACTAAATCTTCAAAATTATTACTATTCAATATATTAAATTCAAGAATTTTTATGTTTTCTGTTAGTCTGTAGCTTTCTATGGTGGTGTATTGATCAAAGATTTGTTGTGGTTTATGAATGTGTTTGAGTTTATTTTTCAATTTATTGATTTGGGTATGTGTAAAGATTTGATCTTTTTGGATTTTGTTAGGTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAGGTATTGTCTTTGGTTTCAATTTAGCATTCAGTATCTATCCATAAAAAGAGAGAATCCGGATTTGTAGTAGTAACATTTTCAAGGGGCTCACAGTGGTGTGTATTTCTTGTATCCATTCTAACTTGCTGTGATATCTGTTTTGGGATTAATATTGATTATAAGGGTTTAGGGGAATCCTAGTAGCTCAGTTGGTTGACTAGATGGATTTTTAGATTAATCGTGGTTATAAGGGTATAGCATATGTTGCTTGGACACTTCAAAAAATGTGTGTCGGATACTCCAAAAGTAGTGCTCTTTTGAAGGATCCGACGTGGTCGTGGCAATATTTTTAGAGAGTCCGAGCAACACGGGGTATGAGAATCTTAGTAACTCAATTGGTTGATTGCCTGAAATTTTTCCTTGTGGGGACTTGATTCCCCATCTTGTAATTCCCTCCCCCTTTTCCCTGTAACTACCCCCAATTTTTTTAAAAAGGGTTATAAGGGTATAATGGTAGTAAAGACTGTATATTTAACGTTAATCAACTGAGAAAGGGAGTTGATATTGTGGTGATATCGTGGAGTCATTCTAATTTGCTGCGATTATAGTTTGAGATTAGTCTGTATTACAAGGGTATAATGGCAGTAAAGACTGCATCTTTAATGATAATTGACTGACCAAGGGGCTGATGGTATGTGTTTTGGTGATCTTAGACTCTTAGTATGTGTTTTGGTGGTCTTGATCTTACATTAATCTGTGAGCTTGATGTGTTAATGCTGTTGAAGGGGGAAAAGGAAGAACAATGAAGTTTGATTCTTTTTTGGACTGATTTAACTTCCAAACTTGTTGTGAGGCTTTAAGTAATTGAGACATACTTCACTTATTTGTTCAACCTCACTACCTACATTCCTTTTATGATCTAAAAAAGCTCATTTTGCACTATTGCGTTGAGAGTTTTACTGAGTGGGATGTGAATGAATAGAGGCAGTCAGTTGGCATTCAACATGTCATTCTTCTGCCTTTCCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCTCTTAATGCCCCCAACGGATCTTAGAGTTTTTTTTGCGCTTTTTTGCTTTAGGCTACACTGAATGAAAGGCACACCTTCAATTAGGCATACATAATTTTGCAGGTGATTGTGTGTAAGATATTATTCACTTATTGGTATTATGCTACACGTCTTTACTGGGATGTAGAATTGTATCAATTGTAACTGCATGCAAATATCATTCACCTAGTTTCTTCTGTACAGTTAGCAGTGCAATTTAAGCCAAACTTGTGTTCATCCTATGTCTTTCAGAGTTCAGTAAACCTGAGCCCTGTCTTCTCACAAGAAACAGATTTCCTATTTTTTCTGCTACATGCAAGCATCATATTAACTATTTCAAGAAAGGAGAATCGTGAAATCAGATATTTAGCCAGACATATCTGTCTTTACGCTGGTTTCAGATTCAGCTTTACTGATTTGCTTGGCCAAATCTGCAATCTCTTTTATTTTTTGTGAGCTGTAACCTTTATGTGATGGCCGTGATTAGGATTCATAAACTTCGTCATTTTGGTGATTAGTATTCATGTACTCTCTTCATTTTGGCAAATCGGGTATTTTGAATTATTTTGGTGATTGATTATGAAGAAATGAGGCTTTCATGCATCTTGAATCTTTCTTGAACATGCTTCTATCAGATATCAGGCTGTTCTCATTATCTTATCCTTCTGTTAACTCGAGTACTTTCTCTTTCAGTCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTA</genome_strand>
        <mrna_strand>TCCAGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAG.........................................................................................................................................................................................................GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277578" ref_strand="+" ref_description="SGN-E277578 [cLER-6-I4]">
      <seq>aagcaacaaccagttttcactaaggttgatcagcttaggccaacggctactgggctaaatcttactgtgaaggtggttaatacaaagatggtagtgccaaggggaaatcaaggccgtcagatgcgattggctgaatgcttggttggtgatgagacagggatgatcattttcactgctagaaatgatcaagtcgacatgatgaaagaaggtgctactgtaattctgcgcaatgcaaaaatagatatgttcaagggatcaatgatgcttgcagtggacaggtggggacgtattgaagttaccgaacctgctagtttctctgtcaaggaagacagtaatctgtctcttatcgagtttgaacaagtgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8234" stop="5520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7934" g_stop="7745" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5995" g_stop="5820" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="366" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E277578" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7934" e_stop="7745"/>
          <exon e_start="5995" e_stop="5820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAGGTATTGTCTTTGGTTTCAATTTAGCATTCAGTATCTATCCATAAAAAGAGAGAATCCGGATTTGTAGTAGTAACATTTTCAAGGGGCTCACAGTGGTGTGTATTTCTTGTATCCATTCTAACTTGCTGTGATATCTGTTTTGGGATTAATATTGATTATAAGGGTTTAGGGGAATCCTAGTAGCTCAGTTGGTTGACTAGATGGATTTTTAGATTAATCGTGGTTATAAGGGTATAGCATATGTTGCTTGGACACTTCAAAAAATGTGTGTCGGATACTCCAAAAGTAGTGCTCTTTTGAAGGATCCGACGTGGTCGTGGCAATATTTTTAGAGAGTCCGAGCAACACGGGGTATGAGAATCTTAGTAACTCAATTGGTTGATTGCCTGAAATTTTTCCTTGTGGGGACTTGATTCCCCATCTTGTAATTCCCTCCCCCTTTTCCCTGTAACTACCCCCAATTTTTTTAAAAAGGGTTATAAGGGTATAATGGTAGTAAAGACTGTATATTTAACGTTAATCAACTGAGAAAGGGAGTTGATATTGTGGTGATATCGTGGAGTCATTCTAATTTGCTGCGATTATAGTTTGAGATTAGTCTGTATTACAAGGGTATAATGGCAGTAAAGACTGCATCTTTAATGATAATTGACTGACCAAGGGGCTGATGGTATGTGTTTTGGTGATCTTAGACTCTTAGTATGTGTTTTGGTGGTCTTGATCTTACATTAATCTGTGAGCTTGATGTGTTAATGCTGTTGAAGGGGGAAAAGGAAGAACAATGAAGTTTGATTCTTTTTTGGACTGATTTAACTTCCAAACTTGTTGTGAGGCTTTAAGTAATTGAGACATACTTCACTTATTTGTTCAACCTCACTACCTACATTCCTTTTATGATCTAAAAAAGCTCATTTTGCACTATTGCGTTGAGAGTTTTACTGAGTGGGATGTGAATGAATAGAGGCAGTCAGTTGGCATTCAACATGTCATTCTTCTGCCTTTCCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCTCTTAATGCCCCCAACGGATCTTAGAGTTTTTTTTGCGCTTTTTTGCTTTAGGCTACACTGAATGAAAGGCACACCTTCAATTAGGCATACATAATTTTGCAGGTGATTGTGTGTAAGATATTATTCACTTATTGGTATTATGCTACACGTCTTTACTGGGATGTAGAATTGTATCAATTGTAACTGCATGCAAATATCATTCACCTAGTTTCTTCTGTACAGTTAGCAGTGCAATTTAAGCCAAACTTGTGTTCATCCTATGTCTTTCAGAGTTCAGTAAACCTGAGCCCTGTCTTCTCACAAGAAACAGATTTCCTATTTTTTCTGCTACATGCAAGCATCATATTAACTATTTCAAGAAAGGAGAATCGTGAAATCAGATATTTAGCCAGACATATCTGTCTTTACGCTGGTTTCAGATTCAGCTTTACTGATTTGCTTGGCCAAATCTGCAATCTCTTTTATTTTTTGTGAGCTGTAACCTTTATGTGATGGCCGTGATTAGGATTCATAAACTTCGTCATTTTGGTGATTAGTATTCATGTACTCTCTTCATTTTGGCAAATCGGGTATTTTGAATTATTTTGGTGATTGATTATGAAGAAATGAGGCTTTCATGCATCTTGAATCTTTCTTGAACATGCTTCTATCAGATATCAGGCTGTTCTCATTATCTTATCCTTCTGTTAACTCGAGTACTTTCTCTTTCAGTCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACT</genome_strand>
        <mrna_strand>AAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGATGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297005" ref_strand="+" ref_description="SGN-E297005 [cLET-26-P24]">
      <seq>aatactcagatctcaatttttctcttcaattcaggtttaaaataaaaaatgggtgaaccaaagaagcaacaaccagttttcactaaggttgatcagcttaggccaacggctactgggctaaatcttactgtgaaggtggttaatacaaagatggtagtgccaaggggaaatcaaggccgtcagatgcgattggctgaatgcttggttggtgatgagacagggatgatcattttcactgctagaaatgatcaagtcgacatgatgaaagaaggtgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8498" stop="5670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8198" g_stop="8165" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7963" g_stop="7745" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="253" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5995" g_stop="5970" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="279" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E297005" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8198" e_stop="8165"/>
          <exon e_start="7963" e_stop="7745"/>
          <exon e_start="5995" e_stop="5970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTCAGATCTCAATTTTTCTCTTCAATTCAGGTAAATCAAAAACTAAATCTTCAAAATTATTACTATTCAATATATTAAATTCAAGAATTTTTATGTTTTCTGTTAGTCTGTAGCTTTCTATGGTGGTGTATTGATCAAAGATTTGTTGTGGTTTATGAATGTGTTTGAGTTTATTTTTCAATTTATTGATTTGGGTATGTGTAAAGATTTGATCTTTTTGGATTTTGTTAGGTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAGGTATTGTCTTTGGTTTCAATTTAGCATTCAGTATCTATCCATAAAAAGAGAGAATCCGGATTTGTAGTAGTAACATTTTCAAGGGGCTCACAGTGGTGTGTATTTCTTGTATCCATTCTAACTTGCTGTGATATCTGTTTTGGGATTAATATTGATTATAAGGGTTTAGGGGAATCCTAGTAGCTCAGTTGGTTGACTAGATGGATTTTTAGATTAATCGTGGTTATAAGGGTATAGCATATGTTGCTTGGACACTTCAAAAAATGTGTGTCGGATACTCCAAAAGTAGTGCTCTTTTGAAGGATCCGACGTGGTCGTGGCAATATTTTTAGAGAGTCCGAGCAACACGGGGTATGAGAATCTTAGTAACTCAATTGGTTGATTGCCTGAAATTTTTCCTTGTGGGGACTTGATTCCCCATCTTGTAATTCCCTCCCCCTTTTCCCTGTAACTACCCCCAATTTTTTTAAAAAGGGTTATAAGGGTATAATGGTAGTAAAGACTGTATATTTAACGTTAATCAACTGAGAAAGGGAGTTGATATTGTGGTGATATCGTGGAGTCATTCTAATTTGCTGCGATTATAGTTTGAGATTAGTCTGTATTACAAGGGTATAATGGCAGTAAAGACTGCATCTTTAATGATAATTGACTGACCAAGGGGCTGATGGTATGTGTTTTGGTGATCTTAGACTCTTAGTATGTGTTTTGGTGGTCTTGATCTTACATTAATCTGTGAGCTTGATGTGTTAATGCTGTTGAAGGGGGAAAAGGAAGAACAATGAAGTTTGATTCTTTTTTGGACTGATTTAACTTCCAAACTTGTTGTGAGGCTTTAAGTAATTGAGACATACTTCACTTATTTGTTCAACCTCACTACCTACATTCCTTTTATGATCTAAAAAAGCTCATTTTGCACTATTGCGTTGAGAGTTTTACTGAGTGGGATGTGAATGAATAGAGGCAGTCAGTTGGCATTCAACATGTCATTCTTCTGCCTTTCCGCCTTTTTTCATTAAAGCCCACACTTTATTTGCTCTTAATGCCCCCAACGGATCTTAGAGTTTTTTTTGCGCTTTTTTGCTTTAGGCTACACTGAATGAAAGGCACACCTTCAATTAGGCATACATAATTTTGCAGGTGATTGTGTGTAAGATATTATTCACTTATTGGTATTATGCTACACGTCTTTACTGGGATGTAGAATTGTATCAATTGTAACTGCATGCAAATATCATTCACCTAGTTTCTTCTGTACAGTTAGCAGTGCAATTTAAGCCAAACTTGTGTTCATCCTATGTCTTTCAGAGTTCAGTAAACCTGAGCCCTGTCTTCTCACAAGAAACAGATTTCCTATTTTTTCTGCTACATGCAAGCATCATATTAACTATTTCAAGAAAGGAGAATCGTGAAATCAGATATTTAGCCAGACATATCTGTCTTTACGCTGGTTTCAGATTCAGCTTTACTGATTTGCTTGGCCAAATCTGCAATCTCTTTTATTTTTTGTGAGCTGTAACCTTTATGTGATGGCCGTGATTAGGATTCATAAACTTCGTCATTTTGGTGATTAGTATTCATGTACTCTCTTCATTTTGGCAAATCGGGTATTTTGAATTATTTTGGTGATTGATTATGAAGAAATGAGGCTTTCATGCATCTTGAATCTTTCTTGAACATGCTTCTATCAGATATCAGGCTGTTCTCATTATCTTATCCTTCTGTTAACTCGAGTACTTTCTCTTTCAGTCGACATGATGAAAGAAGGTGCTACT</genome_strand>
        <mrna_strand>AATACTCAGATCTCAATTTTTCTCTTCAATTCAG.........................................................................................................................................................................................................GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACATGATGAAAGAAGGTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726310" ref_strand="+" ref_description="SGN-E726310 [LA11BG12]">
      <seq>cgtgatacttctcaagtcttgaattctacatataaggaatattattgaggattaattcttagtaattatggctggaaaattaaggaaatgcatgctaatgtgttgttcaagaaagtctttcaatcaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaagaagctgtgaatgtatcactaggggacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="9647" stop="20438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9945" g_stop="9980" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9981" i_stop="10325" i_length="345">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10326" g_stop="10416" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="127" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10417" i_stop="15441" i_length="5025">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="189" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="330" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="379" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="496" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="550" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="636" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="742" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20057" g_stop="20138" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="824" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E726310" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9945" e_stop="9980"/>
          <exon e_start="10326" e_stop="10416"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATACTTCTCAAGTCTTGAATTCTACATATAAGGTACACTTTCTCTTTTTTATATGTACTAAAAGAACATCAAATTTTGAATAATCTGATTACTTAAAAGATATCTATGCATGTATCACTTTTATATCTTGAATAATCATGTCATGTCATTTAGCTTTCATATTCAGATAGTAATTCATATTCTTAGGCAAAGGCAAAGTAGTTGCATATACTAATGGAATCCTAGGAGTTTTAGATCAAACAAATTTGTTATCTTTTTTGGTGTGTGGAGTATAATGTGGGGTATTGCATATTATTATTATTATTATTATTATTATTATATATTATGTATGATATTGTTAACCAACGTATATGATAAGTGGCTGAATTATATTCCAGGAATATTATTGAGGATTAATTCTTAGTAATTATGGCTGGAAAATTAAGGAAATGCATGCTAATGTGTTGTTCAAGAAAGTCTTTCAATCAGGTTAGTTCTATATATTTAATTGTCTTTATTTTGAGTCAAATGAAGATGGTAAATGTATAATAACACCCTTATAGTTCCGATAATAATATACGTAATGTAATCTCACGGGTAGGTGCATCTACCTTGTGAGGTTAAAATTTCTGAAAGCAACTATTTGAGAATTTACGAGTAATACTAAAATACTATAAAGGTAAATTCATAAAATAAACCTCCCTCTCTGCCACAAAATATTCTAGGTTTATTTTTGCTTTTGAGATTCAAAAAATTCACGTTAAATGATTTATAGTATAAGCGAAAAATATACAATAAATCGAGGTTGAAAGGATAATGTAGAATGAGTGTTAAGACAAGAAGGGCTATTCGAATGGTAAGCACTCCTCATTTCCAATCCGAAGGTGGTGAGTTACGTGCAAAATTCAAAACCCAAAAATGACTACTTTTATTAGTTATAGAAATTGAAAAGTGACTATGTGTGATTTTTTAGTGAATTATTTTTCGACTCTTAATTTTCTTTTGTCAAGTCTTTCTCATTTGGGCCCTCTTATCATAATGTTCATAGTTTGGATACTAGCCACATTGTTCGATTCTATCTATTCACCATATAATGAAGGTCAATAATGAGGAAAAAAAAAACTTGCAAATTTTAGATTGAATTATGATATAAATTATAAAATAAGATTTATACCTTTTGGATATTTTCGTTTTAATTCTTCATTTTGTTGAAATTTTCCTGCGTAAAAGACTTCAAAATTTAATAACAAAAAACCAAGGGAAAATAGGTGTATACGTACTTTTACACGTTATAGTTTTCCATCAGAATAGTTATAGACAATGTAAAAACATATATATTTTATGTATAACTACTGTATATTTTTATATATAATACAGGTTAGCGACCGTAAAACGGCCTTTTTTTAAAGTTGTTACTTCAATCCAATCAACAAGCCCAAACTTCTTTAATGGACCACATTTTTTATCATTTTAAATGCAACTTTTATAGGTCCAATGGCCCAACAAGCCCAAAACATAAAAGTTTGTTAGATGGCTCCAACCCAAACCCCCCACCCACCACCTTTTTTTTTTTAAAGGAAATTTCACTTAATAATTTTAAATAAGTGATTTTAAACTTTTATCATAAAATATCAAATTCAAAAGTAGTATTCATTTTTGAAAAAAAAATTGTCAAATTTAATATTATGTTCTCGTGGTCCTAGAGTAAAAGTTTAAGATAACTTAGGCCTCATTTGTTTGCATTTAATGTGTTCTGAATCTTAATTATTCAGATTAAGGCCATTAAGTGCATTTAATTTATAAGATTGTTTTTGTAATTATATTTTTTTTCGGGAGCAAGGATTGTCCACTTAAATGGTAGTTGTGTTAAGTCATTATGAAAATTAAATTCATAATACTGCAATATAAAAAATAGTATCTCTTCAAATTTATGTGAAAGCGTTTGATAATCATAAAAAGAAATACAGATTTATTCAACTTGTGATTAAAAAATATCATCCAATTATAAAATTATATCATTAAAATTAAAAATTATTTTAAATTCACAAACATATAAGATCATTTCAGGGGTTTCTAACCAAAAAAAAAAGTTAGGGCTGGAAAATTCAAGCCAAACCTATATGATTCATTTAACTTGTTCAAATTTAAATATATGGACATTATTGTAAACGAATTAAATTTTGGTATAATTCATCTTAATTCATTATAAAAGTTAGCACAAAGTCAGTTCATATTCAATTCTTGTGCTATCCAACACTACCGGAAGTGTTAAATGACCAAAGAATTTGGCCAGAAAATTTTAAAAAATTATAATATTTTTTAATTTGAAAATAAATTCTTTTTTTTTTTTACTTTTTCGTCTGTATTAAAGTTAAAAGAGCAAAAATATTTAAAAAGATAAAATAAATCTCATTCTCATCAAATTCTGACCAAATTTTCTGACCTAAAAGATTTTTTCGATAATTTAATTCGATCACAAACCAATAAATAAGGGTGTCACGTCACAAACCATTTGTGGTGATGAAAGTTATATAAAATGGTAAGGTTGAAAATTTAGAAAATGGCCTTTTCGACTTTCTTAAGAGCATTTTCTTATAGTTCTCTTCAACCTTTCCAATTTCAAAAGAATATTTTGGGATATTGAATGCTTTTGTTTTGGAATTTAGTCATATATACATTGATAGGATAAGGATTACGTACAAAGTTATTAGTCTTTCTGTTTCAAAATAATTCCATATTTGGATACAAACAAATAGTAACTAACTAAATTTTCATCATTTTTCTAAGAGAAGTCATTAAATTTGCATTTGAATTTTTTGAATTGGTTATACTTTATCTATTATTTTCTTTACAAAAAAAAAAAGTGAGTGAATTTTTATTCTTATTGACTTGTCACAAAAGTTTTTCAATATGTGTACTTGGTTTTCTTTTTATTTTAATAATGATGAAAAGATTAAATTGTCCTCAGAAGTATGTAAAACAATTTAGATTTGTTAATAAAATTCGTCGTCAAGATTAAAATATTAAGTTCATTGATTTTTTTCTTTTAATATTTTGGTGTGAATTTCTAATATAGTTACTGACAATTAATGAAAATAGTGATTGATGGAGTTACTATGAAAGTGAAAATTCAAGTTGATGGTGTAGTTGACCATTATTTGTGTGCCATTTAGGTTGATTAAGAAAGGAAAAATGTATAAGTATCGATTTAACTTATGTTCGAAATTTCAGAAACACATTTATACTATACGAATGTCCTATACTCCTTTGAACTTATTTTAAATAATTTTTTACCCCTTTTTAGAGGGTTATAATTCTCACATAGATAAAAAAAAAGTTCTTATAAAAAAATAATATAATGGAAAGCTAGCTTTAGTTGTTTGTGAATAAGAAAAAAAATTAATCCCTTTGTTTAATATTAATATTCGTTTACTATTGACTTTATATATTTATTTTAATATTATCTTTTTATTTTTGATTTGACATACATATCAAGAAAATTACAATAACATAATAAATTTAATATTTTATTATTATTAATTAATATCTCAAAATAATTTAACGAACAATTATTATTAAATGAAATGAGTAGTTGATCTCAATAACAAGAAAGATAGAATCCCAAAATTTGGATCATTTCCCAAAATTGAAGAATAAATTTAACTATTTTCTCAAACATCGATAAAACTTAGCCTTAATTATCATTGAAGAATGGTCAAATATTGGTTGTGATTGGTCTCATATTGTTTTTTTTTTTCTTCATATTTTATTCATTCAAACTTTATTTGTGAGATGGTTATGATAGTAAATTCATCTTTAATAAGTCGAAAAAGATGAATCAATTTAGAAATAATGGACTTTTTCCAATAAAATCGGATCTTGAAATTAAAAGAGTTTATTTATAATGTGAAGAAGAAAAGTTCATTTTATTATTTAATTAAATGTATAGGATGTAATGAGTAACACTAAATTATTTAAAAACATAAAAAATTAATGAAATGTTGAGTCCAAAAGCCAAAAATAGAATGTGGTGGCACTCCATGGTTGACTTAGCCACCGGCAAGCCAGGAAGGCCACATTACACGTACTACCCCTTCACCTAAAACCTTATAATAAATTAATATTTAATAATCATAATCCTATTTTTGACTTAGTTATATATATAATTAGAAGACAAAGTAGGATTCTATTATGTCCACTAAACTATTGTGCCTTCGTGCCCCCTGATCGGGTTAACACTATTTGAAGTCGTTTGATGTGAAATATAAATTAGAATATCTAATCGAAGGTATTAAATCATAGTAACTGAGAATTGAGCGAATCTTAAAACTCAATTAAATTTAAGCATTTTCCACACCTTTGAGATAGCGGTAGGACAAACGAAAAATATTAGATAGGAAACATATTTTTAAATTGTTTGAACTTATATTGAAAGTGAGTAATATCACCAATGAGGCCGTTACAATAATACAATTTTTATACTCTATGTAATCAACAATAATTGTTCAGTATTGACTTGAATACCTCTTAAGAAATAATAAATAATAGGGATAACATTTATATTATCCTTTGAACTTATTAAATTAAATGTTTTGAAAAAACGTGTTAGATAATAAATAATACTTAATAACAAGGATGAAATTGGCACAAATTGTTGAACAATTATTTTCAATATAATGGATTTAAAAATTTTGTTTTATCTTTGATGAAATGATTCATAAAAACACAAATATTTATGATTTAATTTAGATCACAAATTTGGAAAGTGTTTCTTTCCTTTTTATACTTGGTGTACAGTGAAAGTCAAAGTCATCACATCCTCAGTTTCATTTTAGGAGTTTAATTAATTTTTAAAGTTAAATTAAATTATATTAATTTAATATTTTAATATAAAAATTTAAACATTTAAAAATTATATTAATATGACTCAAAATATATTTTAATCAAAATCCATATAATTTGACAAAAAATAAGAAGTGTGATATTAATTTATAAATTGTAATAATTGAAAATGAAAAACTATTTTAATTGATTAACATAGCAAGTGAAATCAATGGCCCATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAA</genome_strand>
        <mrna_strand>CGTGATACTTCTCAAGTCTTGAATTCTACATATAAG.........................................................................................................................................................................................................................................................................................................................................................GAATATTATTGAGGATTAATTCTTAGTAATTATGGCTGGAAAATTAAGGAAATGCATGCTAATGTGTTGTTCAAGAAAGTCTTTCAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAA............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGGACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731138" ref_strand="+" ref_description="SGN-E731138 [LA26BA08]">
      <seq>cttctcaagtcttgaattctacatataaggaatattattgaggattaattcttagtaattatggctggaaaattaaggaaatgcatgctaatgtgttgttcaagaaagtctttcaatcaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="9652" stop="20028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9952" g_stop="9980" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9981" i_stop="10325" i_length="345">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10326" g_stop="10416" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="120" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10417" i_stop="15441" i_length="5025">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="182" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="323" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="372" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="489" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="543" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="629" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="735" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E731138" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9952" e_stop="9980"/>
          <exon e_start="10326" e_stop="10416"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCAAGTCTTGAATTCTACATATAAGGTACACTTTCTCTTTTTTATATGTACTAAAAGAACATCAAATTTTGAATAATCTGATTACTTAAAAGATATCTATGCATGTATCACTTTTATATCTTGAATAATCATGTCATGTCATTTAGCTTTCATATTCAGATAGTAATTCATATTCTTAGGCAAAGGCAAAGTAGTTGCATATACTAATGGAATCCTAGGAGTTTTAGATCAAACAAATTTGTTATCTTTTTTGGTGTGTGGAGTATAATGTGGGGTATTGCATATTATTATTATTATTATTATTATTATTATATATTATGTATGATATTGTTAACCAACGTATATGATAAGTGGCTGAATTATATTCCAGGAATATTATTGAGGATTAATTCTTAGTAATTATGGCTGGAAAATTAAGGAAATGCATGCTAATGTGTTGTTCAAGAAAGTCTTTCAATCAGGTTAGTTCTATATATTTAATTGTCTTTATTTTGAGTCAAATGAAGATGGTAAATGTATAATAACACCCTTATAGTTCCGATAATAATATACGTAATGTAATCTCACGGGTAGGTGCATCTACCTTGTGAGGTTAAAATTTCTGAAAGCAACTATTTGAGAATTTACGAGTAATACTAAAATACTATAAAGGTAAATTCATAAAATAAACCTCCCTCTCTGCCACAAAATATTCTAGGTTTATTTTTGCTTTTGAGATTCAAAAAATTCACGTTAAATGATTTATAGTATAAGCGAAAAATATACAATAAATCGAGGTTGAAAGGATAATGTAGAATGAGTGTTAAGACAAGAAGGGCTATTCGAATGGTAAGCACTCCTCATTTCCAATCCGAAGGTGGTGAGTTACGTGCAAAATTCAAAACCCAAAAATGACTACTTTTATTAGTTATAGAAATTGAAAAGTGACTATGTGTGATTTTTTAGTGAATTATTTTTCGACTCTTAATTTTCTTTTGTCAAGTCTTTCTCATTTGGGCCCTCTTATCATAATGTTCATAGTTTGGATACTAGCCACATTGTTCGATTCTATCTATTCACCATATAATGAAGGTCAATAATGAGGAAAAAAAAAACTTGCAAATTTTAGATTGAATTATGATATAAATTATAAAATAAGATTTATACCTTTTGGATATTTTCGTTTTAATTCTTCATTTTGTTGAAATTTTCCTGCGTAAAAGACTTCAAAATTTAATAACAAAAAACCAAGGGAAAATAGGTGTATACGTACTTTTACACGTTATAGTTTTCCATCAGAATAGTTATAGACAATGTAAAAACATATATATTTTATGTATAACTACTGTATATTTTTATATATAATACAGGTTAGCGACCGTAAAACGGCCTTTTTTTAAAGTTGTTACTTCAATCCAATCAACAAGCCCAAACTTCTTTAATGGACCACATTTTTTATCATTTTAAATGCAACTTTTATAGGTCCAATGGCCCAACAAGCCCAAAACATAAAAGTTTGTTAGATGGCTCCAACCCAAACCCCCCACCCACCACCTTTTTTTTTTTAAAGGAAATTTCACTTAATAATTTTAAATAAGTGATTTTAAACTTTTATCATAAAATATCAAATTCAAAAGTAGTATTCATTTTTGAAAAAAAAATTGTCAAATTTAATATTATGTTCTCGTGGTCCTAGAGTAAAAGTTTAAGATAACTTAGGCCTCATTTGTTTGCATTTAATGTGTTCTGAATCTTAATTATTCAGATTAAGGCCATTAAGTGCATTTAATTTATAAGATTGTTTTTGTAATTATATTTTTTTTCGGGAGCAAGGATTGTCCACTTAAATGGTAGTTGTGTTAAGTCATTATGAAAATTAAATTCATAATACTGCAATATAAAAAATAGTATCTCTTCAAATTTATGTGAAAGCGTTTGATAATCATAAAAAGAAATACAGATTTATTCAACTTGTGATTAAAAAATATCATCCAATTATAAAATTATATCATTAAAATTAAAAATTATTTTAAATTCACAAACATATAAGATCATTTCAGGGGTTTCTAACCAAAAAAAAAAGTTAGGGCTGGAAAATTCAAGCCAAACCTATATGATTCATTTAACTTGTTCAAATTTAAATATATGGACATTATTGTAAACGAATTAAATTTTGGTATAATTCATCTTAATTCATTATAAAAGTTAGCACAAAGTCAGTTCATATTCAATTCTTGTGCTATCCAACACTACCGGAAGTGTTAAATGACCAAAGAATTTGGCCAGAAAATTTTAAAAAATTATAATATTTTTTAATTTGAAAATAAATTCTTTTTTTTTTTTACTTTTTCGTCTGTATTAAAGTTAAAAGAGCAAAAATATTTAAAAAGATAAAATAAATCTCATTCTCATCAAATTCTGACCAAATTTTCTGACCTAAAAGATTTTTTCGATAATTTAATTCGATCACAAACCAATAAATAAGGGTGTCACGTCACAAACCATTTGTGGTGATGAAAGTTATATAAAATGGTAAGGTTGAAAATTTAGAAAATGGCCTTTTCGACTTTCTTAAGAGCATTTTCTTATAGTTCTCTTCAACCTTTCCAATTTCAAAAGAATATTTTGGGATATTGAATGCTTTTGTTTTGGAATTTAGTCATATATACATTGATAGGATAAGGATTACGTACAAAGTTATTAGTCTTTCTGTTTCAAAATAATTCCATATTTGGATACAAACAAATAGTAACTAACTAAATTTTCATCATTTTTCTAAGAGAAGTCATTAAATTTGCATTTGAATTTTTTGAATTGGTTATACTTTATCTATTATTTTCTTTACAAAAAAAAAAAGTGAGTGAATTTTTATTCTTATTGACTTGTCACAAAAGTTTTTCAATATGTGTACTTGGTTTTCTTTTTATTTTAATAATGATGAAAAGATTAAATTGTCCTCAGAAGTATGTAAAACAATTTAGATTTGTTAATAAAATTCGTCGTCAAGATTAAAATATTAAGTTCATTGATTTTTTTCTTTTAATATTTTGGTGTGAATTTCTAATATAGTTACTGACAATTAATGAAAATAGTGATTGATGGAGTTACTATGAAAGTGAAAATTCAAGTTGATGGTGTAGTTGACCATTATTTGTGTGCCATTTAGGTTGATTAAGAAAGGAAAAATGTATAAGTATCGATTTAACTTATGTTCGAAATTTCAGAAACACATTTATACTATACGAATGTCCTATACTCCTTTGAACTTATTTTAAATAATTTTTTACCCCTTTTTAGAGGGTTATAATTCTCACATAGATAAAAAAAAAGTTCTTATAAAAAAATAATATAATGGAAAGCTAGCTTTAGTTGTTTGTGAATAAGAAAAAAAATTAATCCCTTTGTTTAATATTAATATTCGTTTACTATTGACTTTATATATTTATTTTAATATTATCTTTTTATTTTTGATTTGACATACATATCAAGAAAATTACAATAACATAATAAATTTAATATTTTATTATTATTAATTAATATCTCAAAATAATTTAACGAACAATTATTATTAAATGAAATGAGTAGTTGATCTCAATAACAAGAAAGATAGAATCCCAAAATTTGGATCATTTCCCAAAATTGAAGAATAAATTTAACTATTTTCTCAAACATCGATAAAACTTAGCCTTAATTATCATTGAAGAATGGTCAAATATTGGTTGTGATTGGTCTCATATTGTTTTTTTTTTTCTTCATATTTTATTCATTCAAACTTTATTTGTGAGATGGTTATGATAGTAAATTCATCTTTAATAAGTCGAAAAAGATGAATCAATTTAGAAATAATGGACTTTTTCCAATAAAATCGGATCTTGAAATTAAAAGAGTTTATTTATAATGTGAAGAAGAAAAGTTCATTTTATTATTTAATTAAATGTATAGGATGTAATGAGTAACACTAAATTATTTAAAAACATAAAAAATTAATGAAATGTTGAGTCCAAAAGCCAAAAATAGAATGTGGTGGCACTCCATGGTTGACTTAGCCACCGGCAAGCCAGGAAGGCCACATTACACGTACTACCCCTTCACCTAAAACCTTATAATAAATTAATATTTAATAATCATAATCCTATTTTTGACTTAGTTATATATATAATTAGAAGACAAAGTAGGATTCTATTATGTCCACTAAACTATTGTGCCTTCGTGCCCCCTGATCGGGTTAACACTATTTGAAGTCGTTTGATGTGAAATATAAATTAGAATATCTAATCGAAGGTATTAAATCATAGTAACTGAGAATTGAGCGAATCTTAAAACTCAATTAAATTTAAGCATTTTCCACACCTTTGAGATAGCGGTAGGACAAACGAAAAATATTAGATAGGAAACATATTTTTAAATTGTTTGAACTTATATTGAAAGTGAGTAATATCACCAATGAGGCCGTTACAATAATACAATTTTTATACTCTATGTAATCAACAATAATTGTTCAGTATTGACTTGAATACCTCTTAAGAAATAATAAATAATAGGGATAACATTTATATTATCCTTTGAACTTATTAAATTAAATGTTTTGAAAAAACGTGTTAGATAATAAATAATACTTAATAACAAGGATGAAATTGGCACAAATTGTTGAACAATTATTTTCAATATAATGGATTTAAAAATTTTGTTTTATCTTTGATGAAATGATTCATAAAAACACAAATATTTATGATTTAATTTAGATCACAAATTTGGAAAGTGTTTCTTTCCTTTTTATACTTGGTGTACAGTGAAAGTCAAAGTCATCACATCCTCAGTTTCATTTTAGGAGTTTAATTAATTTTTAAAGTTAAATTAAATTATATTAATTTAATATTTTAATATAAAAATTTAAACATTTAAAAATTATATTAATATGACTCAAAATATATTTTAATCAAAATCCATATAATTTGACAAAAAATAAGAAGTGTGATATTAATTTATAAATTGTAATAATTGAAAATGAAAAACTATTTTAATTGATTAACATAGCAAGTGAAATCAATGGCCCATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG</genome_strand>
        <mrna_strand>CTTCTCAAGTCTTGAATTCTACATATAAG.........................................................................................................................................................................................................................................................................................................................................................GAATATTATTGAGGATTAATTCTTAGTAATTATGGCTGGAAAATTAAGGAAATGCATGCTAATGTGTTGTTCAAGAAAGTCTTTCAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736772" ref_strand="+" ref_description="SGN-E736772 [LC07AE09]">
      <seq>ttctcaagtcttgaattctacatataaggaatattattgaggattaattcttagtaattatggctggaaaattaaggaaatgcatgctaatgtgttgttcaagaaagtctttcaatcaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgntgcactcttaatatgttgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="9653" stop="20534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9953" g_stop="9980" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9981" i_stop="10325" i_length="345">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10326" g_stop="10416" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="119" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10417" i_stop="15441" i_length="5025">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="181" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="322" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="371" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="488" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="542" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="628" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="734" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20057" g_stop="20234" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="912" r_length="178" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E736772" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9953" e_stop="9980"/>
          <exon e_start="10326" e_stop="10416"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAAGTCTTGAATTCTACATATAAGGTACACTTTCTCTTTTTTATATGTACTAAAAGAACATCAAATTTTGAATAATCTGATTACTTAAAAGATATCTATGCATGTATCACTTTTATATCTTGAATAATCATGTCATGTCATTTAGCTTTCATATTCAGATAGTAATTCATATTCTTAGGCAAAGGCAAAGTAGTTGCATATACTAATGGAATCCTAGGAGTTTTAGATCAAACAAATTTGTTATCTTTTTTGGTGTGTGGAGTATAATGTGGGGTATTGCATATTATTATTATTATTATTATTATTATTATATATTATGTATGATATTGTTAACCAACGTATATGATAAGTGGCTGAATTATATTCCAGGAATATTATTGAGGATTAATTCTTAGTAATTATGGCTGGAAAATTAAGGAAATGCATGCTAATGTGTTGTTCAAGAAAGTCTTTCAATCAGGTTAGTTCTATATATTTAATTGTCTTTATTTTGAGTCAAATGAAGATGGTAAATGTATAATAACACCCTTATAGTTCCGATAATAATATACGTAATGTAATCTCACGGGTAGGTGCATCTACCTTGTGAGGTTAAAATTTCTGAAAGCAACTATTTGAGAATTTACGAGTAATACTAAAATACTATAAAGGTAAATTCATAAAATAAACCTCCCTCTCTGCCACAAAATATTCTAGGTTTATTTTTGCTTTTGAGATTCAAAAAATTCACGTTAAATGATTTATAGTATAAGCGAAAAATATACAATAAATCGAGGTTGAAAGGATAATGTAGAATGAGTGTTAAGACAAGAAGGGCTATTCGAATGGTAAGCACTCCTCATTTCCAATCCGAAGGTGGTGAGTTACGTGCAAAATTCAAAACCCAAAAATGACTACTTTTATTAGTTATAGAAATTGAAAAGTGACTATGTGTGATTTTTTAGTGAATTATTTTTCGACTCTTAATTTTCTTTTGTCAAGTCTTTCTCATTTGGGCCCTCTTATCATAATGTTCATAGTTTGGATACTAGCCACATTGTTCGATTCTATCTATTCACCATATAATGAAGGTCAATAATGAGGAAAAAAAAAACTTGCAAATTTTAGATTGAATTATGATATAAATTATAAAATAAGATTTATACCTTTTGGATATTTTCGTTTTAATTCTTCATTTTGTTGAAATTTTCCTGCGTAAAAGACTTCAAAATTTAATAACAAAAAACCAAGGGAAAATAGGTGTATACGTACTTTTACACGTTATAGTTTTCCATCAGAATAGTTATAGACAATGTAAAAACATATATATTTTATGTATAACTACTGTATATTTTTATATATAATACAGGTTAGCGACCGTAAAACGGCCTTTTTTTAAAGTTGTTACTTCAATCCAATCAACAAGCCCAAACTTCTTTAATGGACCACATTTTTTATCATTTTAAATGCAACTTTTATAGGTCCAATGGCCCAACAAGCCCAAAACATAAAAGTTTGTTAGATGGCTCCAACCCAAACCCCCCACCCACCACCTTTTTTTTTTTAAAGGAAATTTCACTTAATAATTTTAAATAAGTGATTTTAAACTTTTATCATAAAATATCAAATTCAAAAGTAGTATTCATTTTTGAAAAAAAAATTGTCAAATTTAATATTATGTTCTCGTGGTCCTAGAGTAAAAGTTTAAGATAACTTAGGCCTCATTTGTTTGCATTTAATGTGTTCTGAATCTTAATTATTCAGATTAAGGCCATTAAGTGCATTTAATTTATAAGATTGTTTTTGTAATTATATTTTTTTTCGGGAGCAAGGATTGTCCACTTAAATGGTAGTTGTGTTAAGTCATTATGAAAATTAAATTCATAATACTGCAATATAAAAAATAGTATCTCTTCAAATTTATGTGAAAGCGTTTGATAATCATAAAAAGAAATACAGATTTATTCAACTTGTGATTAAAAAATATCATCCAATTATAAAATTATATCATTAAAATTAAAAATTATTTTAAATTCACAAACATATAAGATCATTTCAGGGGTTTCTAACCAAAAAAAAAAGTTAGGGCTGGAAAATTCAAGCCAAACCTATATGATTCATTTAACTTGTTCAAATTTAAATATATGGACATTATTGTAAACGAATTAAATTTTGGTATAATTCATCTTAATTCATTATAAAAGTTAGCACAAAGTCAGTTCATATTCAATTCTTGTGCTATCCAACACTACCGGAAGTGTTAAATGACCAAAGAATTTGGCCAGAAAATTTTAAAAAATTATAATATTTTTTAATTTGAAAATAAATTCTTTTTTTTTTTTACTTTTTCGTCTGTATTAAAGTTAAAAGAGCAAAAATATTTAAAAAGATAAAATAAATCTCATTCTCATCAAATTCTGACCAAATTTTCTGACCTAAAAGATTTTTTCGATAATTTAATTCGATCACAAACCAATAAATAAGGGTGTCACGTCACAAACCATTTGTGGTGATGAAAGTTATATAAAATGGTAAGGTTGAAAATTTAGAAAATGGCCTTTTCGACTTTCTTAAGAGCATTTTCTTATAGTTCTCTTCAACCTTTCCAATTTCAAAAGAATATTTTGGGATATTGAATGCTTTTGTTTTGGAATTTAGTCATATATACATTGATAGGATAAGGATTACGTACAAAGTTATTAGTCTTTCTGTTTCAAAATAATTCCATATTTGGATACAAACAAATAGTAACTAACTAAATTTTCATCATTTTTCTAAGAGAAGTCATTAAATTTGCATTTGAATTTTTTGAATTGGTTATACTTTATCTATTATTTTCTTTACAAAAAAAAAAAGTGAGTGAATTTTTATTCTTATTGACTTGTCACAAAAGTTTTTCAATATGTGTACTTGGTTTTCTTTTTATTTTAATAATGATGAAAAGATTAAATTGTCCTCAGAAGTATGTAAAACAATTTAGATTTGTTAATAAAATTCGTCGTCAAGATTAAAATATTAAGTTCATTGATTTTTTTCTTTTAATATTTTGGTGTGAATTTCTAATATAGTTACTGACAATTAATGAAAATAGTGATTGATGGAGTTACTATGAAAGTGAAAATTCAAGTTGATGGTGTAGTTGACCATTATTTGTGTGCCATTTAGGTTGATTAAGAAAGGAAAAATGTATAAGTATCGATTTAACTTATGTTCGAAATTTCAGAAACACATTTATACTATACGAATGTCCTATACTCCTTTGAACTTATTTTAAATAATTTTTTACCCCTTTTTAGAGGGTTATAATTCTCACATAGATAAAAAAAAAGTTCTTATAAAAAAATAATATAATGGAAAGCTAGCTTTAGTTGTTTGTGAATAAGAAAAAAAATTAATCCCTTTGTTTAATATTAATATTCGTTTACTATTGACTTTATATATTTATTTTAATATTATCTTTTTATTTTTGATTTGACATACATATCAAGAAAATTACAATAACATAATAAATTTAATATTTTATTATTATTAATTAATATCTCAAAATAATTTAACGAACAATTATTATTAAATGAAATGAGTAGTTGATCTCAATAACAAGAAAGATAGAATCCCAAAATTTGGATCATTTCCCAAAATTGAAGAATAAATTTAACTATTTTCTCAAACATCGATAAAACTTAGCCTTAATTATCATTGAAGAATGGTCAAATATTGGTTGTGATTGGTCTCATATTGTTTTTTTTTTTCTTCATATTTTATTCATTCAAACTTTATTTGTGAGATGGTTATGATAGTAAATTCATCTTTAATAAGTCGAAAAAGATGAATCAATTTAGAAATAATGGACTTTTTCCAATAAAATCGGATCTTGAAATTAAAAGAGTTTATTTATAATGTGAAGAAGAAAAGTTCATTTTATTATTTAATTAAATGTATAGGATGTAATGAGTAACACTAAATTATTTAAAAACATAAAAAATTAATGAAATGTTGAGTCCAAAAGCCAAAAATAGAATGTGGTGGCACTCCATGGTTGACTTAGCCACCGGCAAGCCAGGAAGGCCACATTACACGTACTACCCCTTCACCTAAAACCTTATAATAAATTAATATTTAATAATCATAATCCTATTTTTGACTTAGTTATATATATAATTAGAAGACAAAGTAGGATTCTATTATGTCCACTAAACTATTGTGCCTTCGTGCCCCCTGATCGGGTTAACACTATTTGAAGTCGTTTGATGTGAAATATAAATTAGAATATCTAATCGAAGGTATTAAATCATAGTAACTGAGAATTGAGCGAATCTTAAAACTCAATTAAATTTAAGCATTTTCCACACCTTTGAGATAGCGGTAGGACAAACGAAAAATATTAGATAGGAAACATATTTTTAAATTGTTTGAACTTATATTGAAAGTGAGTAATATCACCAATGAGGCCGTTACAATAATACAATTTTTATACTCTATGTAATCAACAATAATTGTTCAGTATTGACTTGAATACCTCTTAAGAAATAATAAATAATAGGGATAACATTTATATTATCCTTTGAACTTATTAAATTAAATGTTTTGAAAAAACGTGTTAGATAATAAATAATACTTAATAACAAGGATGAAATTGGCACAAATTGTTGAACAATTATTTTCAATATAATGGATTTAAAAATTTTGTTTTATCTTTGATGAAATGATTCATAAAAACACAAATATTTATGATTTAATTTAGATCACAAATTTGGAAAGTGTTTCTTTCCTTTTTATACTTGGTGTACAGTGAAAGTCAAAGTCATCACATCCTCAGTTTCATTTTAGGAGTTTAATTAATTTTTAAAGTTAAATTAAATTATATTAATTTAATATTTTAATATAAAAATTTAAACATTTAAAAATTATATTAATATGACTCAAAATATATTTTAATCAAAATCCATATAATTTGACAAAAAATAAGAAGTGTGATATTAATTTATAAATTGTAATAATTGAAAATGAAAAACTATTTTAATTGATTAACATAGCAAGTGAAATCAATGGCCCATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAA</genome_strand>
        <mrna_strand>TTCTCAAGTCTTGAATTCTACATATAAG.........................................................................................................................................................................................................................................................................................................................................................GAATATTATTGAGGATTAATTCTTAGTAATTATGGCTGGAAAATTAAGGAAATGCATGCTAATGTGTTGTTCAAGAAAGTCTTTCAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGNTGCACTCTTAATATGTTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730831" ref_strand="+" ref_description="SGN-E730831 [LA25BD02]">
      <seq>ccatttcttgaattctacatataaggaatattattgaggattaattcttagtaattatggctggaaaattaaggaaatgcatgctaatgtgttgttcaagaaagtctttcaatcaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaagaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="9657" stop="20437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9956" g_stop="9980" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9981" i_stop="10325" i_length="345">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10326" g_stop="10416" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="116" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10417" i_stop="15441" i_length="5025">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="178" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="319" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="368" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="485" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="539" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="625" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="731" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20057" g_stop="20137" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="812" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E730831" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9956" e_stop="9980"/>
          <exon e_start="10326" e_stop="10416"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCTTGAATTCTACATATAAGGTACACTTTCTCTTTTTTATATGTACTAAAAGAACATCAAATTTTGAATAATCTGATTACTTAAAAGATATCTATGCATGTATCACTTTTATATCTTGAATAATCATGTCATGTCATTTAGCTTTCATATTCAGATAGTAATTCATATTCTTAGGCAAAGGCAAAGTAGTTGCATATACTAATGGAATCCTAGGAGTTTTAGATCAAACAAATTTGTTATCTTTTTTGGTGTGTGGAGTATAATGTGGGGTATTGCATATTATTATTATTATTATTATTATTATTATATATTATGTATGATATTGTTAACCAACGTATATGATAAGTGGCTGAATTATATTCCAGGAATATTATTGAGGATTAATTCTTAGTAATTATGGCTGGAAAATTAAGGAAATGCATGCTAATGTGTTGTTCAAGAAAGTCTTTCAATCAGGTTAGTTCTATATATTTAATTGTCTTTATTTTGAGTCAAATGAAGATGGTAAATGTATAATAACACCCTTATAGTTCCGATAATAATATACGTAATGTAATCTCACGGGTAGGTGCATCTACCTTGTGAGGTTAAAATTTCTGAAAGCAACTATTTGAGAATTTACGAGTAATACTAAAATACTATAAAGGTAAATTCATAAAATAAACCTCCCTCTCTGCCACAAAATATTCTAGGTTTATTTTTGCTTTTGAGATTCAAAAAATTCACGTTAAATGATTTATAGTATAAGCGAAAAATATACAATAAATCGAGGTTGAAAGGATAATGTAGAATGAGTGTTAAGACAAGAAGGGCTATTCGAATGGTAAGCACTCCTCATTTCCAATCCGAAGGTGGTGAGTTACGTGCAAAATTCAAAACCCAAAAATGACTACTTTTATTAGTTATAGAAATTGAAAAGTGACTATGTGTGATTTTTTAGTGAATTATTTTTCGACTCTTAATTTTCTTTTGTCAAGTCTTTCTCATTTGGGCCCTCTTATCATAATGTTCATAGTTTGGATACTAGCCACATTGTTCGATTCTATCTATTCACCATATAATGAAGGTCAATAATGAGGAAAAAAAAAACTTGCAAATTTTAGATTGAATTATGATATAAATTATAAAATAAGATTTATACCTTTTGGATATTTTCGTTTTAATTCTTCATTTTGTTGAAATTTTCCTGCGTAAAAGACTTCAAAATTTAATAACAAAAAACCAAGGGAAAATAGGTGTATACGTACTTTTACACGTTATAGTTTTCCATCAGAATAGTTATAGACAATGTAAAAACATATATATTTTATGTATAACTACTGTATATTTTTATATATAATACAGGTTAGCGACCGTAAAACGGCCTTTTTTTAAAGTTGTTACTTCAATCCAATCAACAAGCCCAAACTTCTTTAATGGACCACATTTTTTATCATTTTAAATGCAACTTTTATAGGTCCAATGGCCCAACAAGCCCAAAACATAAAAGTTTGTTAGATGGCTCCAACCCAAACCCCCCACCCACCACCTTTTTTTTTTTAAAGGAAATTTCACTTAATAATTTTAAATAAGTGATTTTAAACTTTTATCATAAAATATCAAATTCAAAAGTAGTATTCATTTTTGAAAAAAAAATTGTCAAATTTAATATTATGTTCTCGTGGTCCTAGAGTAAAAGTTTAAGATAACTTAGGCCTCATTTGTTTGCATTTAATGTGTTCTGAATCTTAATTATTCAGATTAAGGCCATTAAGTGCATTTAATTTATAAGATTGTTTTTGTAATTATATTTTTTTTCGGGAGCAAGGATTGTCCACTTAAATGGTAGTTGTGTTAAGTCATTATGAAAATTAAATTCATAATACTGCAATATAAAAAATAGTATCTCTTCAAATTTATGTGAAAGCGTTTGATAATCATAAAAAGAAATACAGATTTATTCAACTTGTGATTAAAAAATATCATCCAATTATAAAATTATATCATTAAAATTAAAAATTATTTTAAATTCACAAACATATAAGATCATTTCAGGGGTTTCTAACCAAAAAAAAAAGTTAGGGCTGGAAAATTCAAGCCAAACCTATATGATTCATTTAACTTGTTCAAATTTAAATATATGGACATTATTGTAAACGAATTAAATTTTGGTATAATTCATCTTAATTCATTATAAAAGTTAGCACAAAGTCAGTTCATATTCAATTCTTGTGCTATCCAACACTACCGGAAGTGTTAAATGACCAAAGAATTTGGCCAGAAAATTTTAAAAAATTATAATATTTTTTAATTTGAAAATAAATTCTTTTTTTTTTTTACTTTTTCGTCTGTATTAAAGTTAAAAGAGCAAAAATATTTAAAAAGATAAAATAAATCTCATTCTCATCAAATTCTGACCAAATTTTCTGACCTAAAAGATTTTTTCGATAATTTAATTCGATCACAAACCAATAAATAAGGGTGTCACGTCACAAACCATTTGTGGTGATGAAAGTTATATAAAATGGTAAGGTTGAAAATTTAGAAAATGGCCTTTTCGACTTTCTTAAGAGCATTTTCTTATAGTTCTCTTCAACCTTTCCAATTTCAAAAGAATATTTTGGGATATTGAATGCTTTTGTTTTGGAATTTAGTCATATATACATTGATAGGATAAGGATTACGTACAAAGTTATTAGTCTTTCTGTTTCAAAATAATTCCATATTTGGATACAAACAAATAGTAACTAACTAAATTTTCATCATTTTTCTAAGAGAAGTCATTAAATTTGCATTTGAATTTTTTGAATTGGTTATACTTTATCTATTATTTTCTTTACAAAAAAAAAAAGTGAGTGAATTTTTATTCTTATTGACTTGTCACAAAAGTTTTTCAATATGTGTACTTGGTTTTCTTTTTATTTTAATAATGATGAAAAGATTAAATTGTCCTCAGAAGTATGTAAAACAATTTAGATTTGTTAATAAAATTCGTCGTCAAGATTAAAATATTAAGTTCATTGATTTTTTTCTTTTAATATTTTGGTGTGAATTTCTAATATAGTTACTGACAATTAATGAAAATAGTGATTGATGGAGTTACTATGAAAGTGAAAATTCAAGTTGATGGTGTAGTTGACCATTATTTGTGTGCCATTTAGGTTGATTAAGAAAGGAAAAATGTATAAGTATCGATTTAACTTATGTTCGAAATTTCAGAAACACATTTATACTATACGAATGTCCTATACTCCTTTGAACTTATTTTAAATAATTTTTTACCCCTTTTTAGAGGGTTATAATTCTCACATAGATAAAAAAAAAGTTCTTATAAAAAAATAATATAATGGAAAGCTAGCTTTAGTTGTTTGTGAATAAGAAAAAAAATTAATCCCTTTGTTTAATATTAATATTCGTTTACTATTGACTTTATATATTTATTTTAATATTATCTTTTTATTTTTGATTTGACATACATATCAAGAAAATTACAATAACATAATAAATTTAATATTTTATTATTATTAATTAATATCTCAAAATAATTTAACGAACAATTATTATTAAATGAAATGAGTAGTTGATCTCAATAACAAGAAAGATAGAATCCCAAAATTTGGATCATTTCCCAAAATTGAAGAATAAATTTAACTATTTTCTCAAACATCGATAAAACTTAGCCTTAATTATCATTGAAGAATGGTCAAATATTGGTTGTGATTGGTCTCATATTGTTTTTTTTTTTCTTCATATTTTATTCATTCAAACTTTATTTGTGAGATGGTTATGATAGTAAATTCATCTTTAATAAGTCGAAAAAGATGAATCAATTTAGAAATAATGGACTTTTTCCAATAAAATCGGATCTTGAAATTAAAAGAGTTTATTTATAATGTGAAGAAGAAAAGTTCATTTTATTATTTAATTAAATGTATAGGATGTAATGAGTAACACTAAATTATTTAAAAACATAAAAAATTAATGAAATGTTGAGTCCAAAAGCCAAAAATAGAATGTGGTGGCACTCCATGGTTGACTTAGCCACCGGCAAGCCAGGAAGGCCACATTACACGTACTACCCCTTCACCTAAAACCTTATAATAAATTAATATTTAATAATCATAATCCTATTTTTGACTTAGTTATATATATAATTAGAAGACAAAGTAGGATTCTATTATGTCCACTAAACTATTGTGCCTTCGTGCCCCCTGATCGGGTTAACACTATTTGAAGTCGTTTGATGTGAAATATAAATTAGAATATCTAATCGAAGGTATTAAATCATAGTAACTGAGAATTGAGCGAATCTTAAAACTCAATTAAATTTAAGCATTTTCCACACCTTTGAGATAGCGGTAGGACAAACGAAAAATATTAGATAGGAAACATATTTTTAAATTGTTTGAACTTATATTGAAAGTGAGTAATATCACCAATGAGGCCGTTACAATAATACAATTTTTATACTCTATGTAATCAACAATAATTGTTCAGTATTGACTTGAATACCTCTTAAGAAATAATAAATAATAGGGATAACATTTATATTATCCTTTGAACTTATTAAATTAAATGTTTTGAAAAAACGTGTTAGATAATAAATAATACTTAATAACAAGGATGAAATTGGCACAAATTGTTGAACAATTATTTTCAATATAATGGATTTAAAAATTTTGTTTTATCTTTGATGAAATGATTCATAAAAACACAAATATTTATGATTTAATTTAGATCACAAATTTGGAAAGTGTTTCTTTCCTTTTTATACTTGGTGTACAGTGAAAGTCAAAGTCATCACATCCTCAGTTTCATTTTAGGAGTTTAATTAATTTTTAAAGTTAAATTAAATTATATTAATTTAATATTTTAATATAAAAATTTAAACATTTAAAAATTATATTAATATGACTCAAAATATATTTTAATCAAAATCCATATAATTTGACAAAAAATAAGAAGTGTGATATTAATTTATAAATTGTAATAATTGAAAATGAAAAACTATTTTAATTGATTAACATAGCAAGTGAAATCAATGGCCCATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTA</genome_strand>
        <mrna_strand>CCATTTCTTGAATTCTACATATAAG.........................................................................................................................................................................................................................................................................................................................................................GAATATTATTGAGGATTAATTCTTAGTAATTATGGCTGGAAAATTAAGGAAATGCATGCTAATGTGTTGTTCAAGAAAGTCTTTCAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAA............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747062" ref_strand="+" ref_description="SGN-E747062 [GI|56562174]">
      <seq>gcattcctccataacaaatgggtgacgttccatccattaaggcgttgaatattcataaaattaaaatttcaatataattaaagaaaattttttccaaatttcaatttagatatataaaatatttatccatacccaaatctcttttctataaatactccttgtaatagtccttcacaacacaaagaacgtgagtttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagtttttcttcttctttacttgatttgcattttgatgtaaatgtattactgaacaacagtgtggtgtgtcatcacataaataatgttaaaatggctgttttcagcttttagcttaatgtaaaaaaaaaaaaaaaaaactcgagactagttctctctctctcgagactagatctctctctgctatattcagtactctcctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14687" stop="20686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14986" g_stop="15272" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="349" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="490" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="539" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="656" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="710" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="796" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="902" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20057" g_stop="20385" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="903" r_stop="1231" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20386" i_stop="20558" i_length="173">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20559" g_stop="20582" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1232" r_stop="1253" r_length="22" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E747062" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1255</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14986" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20385"/>
          <exon e_start="20559" e_stop="20582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTAATCTACTTGTGTTTTTTTTTCACAACCTTCCTTTTTTGATGAGCCAAATATCTTACTCATACTTGTTTGATTCTACTTTCAAAAGTGAAGGCACCTGATTCCTTTAATCAGCATAGACCTATTAGTTTTAAATATTTAGAATAATAAAGAAAACACAATCTTCAACAAAACAGAAACAATGAAAAGAAGAAAATCGA</genome_strand>
        <mrna_strand>GCATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTA.............................................................................................................................................................................AAA-AA-AAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746876" ref_strand="+" ref_description="SGN-E746876 [GI|47104406]">
      <seq>cattcctccataacaaatgggtgacgttccatccattaaggcgttgaatattcataaaattaaaatttcaatataattaaagaaaattttttccaaatttcaatttagatatataaaatatttatccatacccaaatctcttttctataaatactccttgtaatagtccttcacaacacaaagaacgtgagtttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagtttttcttcttctttacttgatttgcattttgatgtaaatgtattactgaacaacagtgtggtgtgtcatcacataaataatgttaaaatggctgttttcagcttttagcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14687" stop="20681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14987" g_stop="15272" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="348" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="489" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="538" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="655" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="709" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="795" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="901" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20057" g_stop="20382" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="902" r_stop="1227" r_length="326" r_score="0.997"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20383" i_stop="20558" i_length="176">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.885" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20559" g_stop="20572" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1228" r_stop="1241" r_length="14" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E746876" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14987" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20382"/>
          <exon e_start="20559" e_stop="20572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTAATCTACTTGTGTTTTTTTTTCACAACCTTCCTTTTTTGATGAGCCAAATATCTTACTCATACTTGTTTGATTCTACTTTCAAAAGTGAAGGCACCTGATTCCTTTAATCAGCATAGACCTATTAGTTTTAAATATTTAGAATAATAAAGAAAACACAATCTTCAACAAAACAGAAACAATGAAAAGA</genome_strand>
        <mrna_strand>CATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAAA................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303399" ref_strand="+" ref_description="SGN-E303399 [cLEX-2-P5]">
      <seq>attcctccataacaaatgggtgacgttccatccattaaggcgttgaatattcataaaattaaaatttcaatataattaaagaaaattttttccatatttcaattcagatatataaaatatttatccatacccaaatctcttttctataaatactccttgtaatagtccttcacaacacaaagaacgtgagtttatttactcttttataagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagggaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgaccggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgctcgctctgattctcgagtttgcccatcacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14688" stop="18038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14988" g_stop="15272" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="347" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="488" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="537" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17738" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="583" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E303399" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14988" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACA</genome_strand>
        <mrna_strand>ATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCATATTTCAATTCAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTATAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................GGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACCGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTCGCTCTGATTCTCGAGTTTGCCCATCACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303165" ref_strand="+" ref_description="SGN-E303165 [cLEX-5-B20]">
      <seq>attcctccataacaaatgggtgacgttccatccattaaggcgttgaatattcataaaattaaaatttcaatataattaaagaaaattttttccaaatttcaatttagatatataaaatatttatccatacccaaatctcttttctataaatactccttgtaatagtccttcacaacacaaagaacgtgagtttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14688" stop="17460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14988" g_stop="15272" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="347" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="488" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17160" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="514" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E303165" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14988" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAAC</genome_strand>
        <mrna_strand>ATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728444" ref_strand="+" ref_description="SGN-E728444 [LA17DD05]">
      <seq>actccttgtaatagtccttcacaacacaaagaacgtgagtttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctncacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14839" stop="20010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15139" g_stop="15272" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="196" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="337" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="386" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="503" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="557" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="643" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19710" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="735" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E728444" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15139" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCA</genome_strand>
        <mrna_strand>ACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTNCACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275046" ref_strand="+" ref_description="SGN-E275046 [cLEN-16-P10]">
      <seq>ccttcacaacacaaagaacgtgagtttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14854" stop="18431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15154" g_stop="15272" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="181" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="322" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="371" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="488" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18131" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="523" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E275046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15154" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATA</genome_strand>
        <mrna_strand>CCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720753" ref_strand="+" ref_description="SGN-E720753 [FC11DA05]">
      <seq>gggcgattggcggccaatcggccgaattgaaaagaacgtgagtttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagcnttggaatattgacttcaaacttactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14866" stop="20505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15166" g_stop="15272" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="137" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="199" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="340" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="389" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="506" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="560" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="646" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="752" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20057" g_stop="20205" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="901" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E720753" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15166" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCC</genome_strand>
        <mrna_strand>AAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCNTTGGAATATTGACTTCAAACTTACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705318" ref_strand="+" ref_description="SGN-E705318 [FA26DB07]">
      <seq>gtttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttncaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttncagtttttcttcttctttacttgatttgcattttgatgtaaatgtattactgaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14877" stop="20623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15177" g_stop="15272" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15495" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="150" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15496" i_stop="15829" i_length="334">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15830" g_stop="15888" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="258" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="375" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="429" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="515" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="621" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20057" g_stop="20323" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="888" r_length="267" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E705318" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15177" e_stop="15272"/>
          <exon e_start="15442" e_stop="15495"/>
          <exon e_start="15830" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACA</genome_strand>
        <mrna_strand>GTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAG..............................................................................................................................................................................................................................................................................................................................................TCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTNCAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTNCAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710594" ref_strand="+" ref_description="SGN-E710594 [FA55DF06]">
      <seq>gtttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaacgacgctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcccttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14877" stop="20528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15177" g_stop="15272" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="158" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="299" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="348" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="465" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="519" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="605" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="711" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20057" g_stop="20228" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="883" r_length="172" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E710594" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15177" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTT</genome_strand>
        <mrna_strand>GTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAC............................................................................................................................................................................................................................................................................................................................................GACGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCCTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551190" ref_strand="+" ref_description="SGN-E551190 [TUS-55-L21]">
      <seq>tttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtgccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14878" stop="19441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15178" g_stop="15272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="157" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="298" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="347" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="464" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="518" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19141" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="585" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E551190" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15178" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTG</genome_strand>
        <mrna_strand>TTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTGCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689018" ref_strand="+" ref_description="SGN-E689018 [t3_tus_55_L21]">
      <seq>tttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtgccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14878" stop="19441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15178" g_stop="15272" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="157" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="298" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="347" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="464" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="518" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19141" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="585" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E689018" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15178" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTG</genome_strand>
        <mrna_strand>TTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTGCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254243" ref_strand="+" ref_description="SGN-E254243 [cLEG-27-A6]">
      <seq>ttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14879" stop="20019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15179" g_stop="15272" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="156" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="297" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="346" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="463" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="517" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="603" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19719" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="704" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E254243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15179" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGG</genome_strand>
        <mrna_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276245" ref_strand="+" ref_description="SGN-E276245 [cLEN-21-C13]">
      <seq>ttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcaaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14879" stop="19947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15179" g_stop="15272" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="156" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="297" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="346" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="463" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="517" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="603" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19647" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="632" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E276245" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15179" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCT</genome_strand>
        <mrna_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCAAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264204" ref_strand="+" ref_description="SGN-E264204 [cLEG-64-P18]">
      <seq>ttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaagtattaaaggacttatgtctattcctgatgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14879" stop="19448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15179" g_stop="15272" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="156" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="297" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="346" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="463" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="517" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19148" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="591" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E264204" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15179" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGG</genome_strand>
        <mrna_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAAGTATTAAAGGACTTATGTCTATTCCTGATGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205499" ref_strand="+" ref_description="SGN-E205499 [cLEC-28-F23]">
      <seq>ttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14879" stop="19396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15179" g_stop="15272" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="156" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="297" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="346" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="463" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="517" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19096" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="539" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E205499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15179" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTG</genome_strand>
        <mrna_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264263" ref_strand="+" ref_description="SGN-E264263 [cLEG-70-H12]">
      <seq>ttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14879" stop="18448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15179" g_stop="15272" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="156" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="297" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="346" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="463" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18148" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="515" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E264263" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15179" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGA</genome_strand>
        <mrna_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260122" ref_strand="+" ref_description="SGN-E260122 [cLEG-52-I21]">
      <seq>ttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14879" stop="18445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15179" g_stop="15272" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="156" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="297" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="346" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="463" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18145" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="512" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E260122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15179" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACT</genome_strand>
        <mrna_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274572" ref_strand="+" ref_description="SGN-E274572 [cLEN-11-C1]">
      <seq>ttatttactcttttttaagcgttgtattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14879" stop="18433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15179" g_stop="15272" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="156" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="297" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="346" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="463" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18133" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="500" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E274572" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15179" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATG</genome_strand>
        <mrna_strand>TTATTTACTCTTTTTTAAGCGTTGTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274496" ref_strand="+" ref_description="SGN-E274496 [cLEN-11-D3]">
      <seq>ttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14879" stop="18433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15179" g_stop="15272" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="156" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="297" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="346" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="463" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18133" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="500" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E274496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15179" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATG</genome_strand>
        <mrna_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245069" ref_strand="+" ref_description="SGN-E245069 [cLEF-13-B5]">
      <seq>ttatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14879" stop="18024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15179" g_stop="15272" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="156" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="297" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="346" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17724" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="378" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E245069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15179" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGT</genome_strand>
        <mrna_strand>TTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262819" ref_strand="+" ref_description="SGN-E262819 [cLEG-59-E1]">
      <seq>tatttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14880" stop="20400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15180" g_stop="15272" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="155" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="296" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="345" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="462" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="516" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="602" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="708" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20057" g_stop="20100" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="752" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E262819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15180" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATT</genome_strand>
        <mrna_strand>TATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311441" ref_strand="+" ref_description="SGN-E311441 [cLEZ-18-C24]">
      <seq>tttactcttttttaagcgtttgattcatcctccggtttgtcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaggattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14882" stop="19435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15182" g_stop="15272" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="153" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="294" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="460" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="514" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19135" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="575" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E311441" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15182" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTA</genome_strand>
        <mrna_strand>TTTACTCTTTTTTAAGCGTTTGATTCATCCTCCGGTTTGTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAGGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213217" ref_strand="+" ref_description="SGN-E213217 [cLEC-72-B6]">
      <seq>tttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtggggtgcagcagtcgaatatgcagttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14882" stop="18441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15182" g_stop="15272" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="153" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="294" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="460" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18141" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="506" r_length="46" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E213217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15182" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGT-GGGTGCAGCAGTCGAATATGCAGTTGTC</genome_strand>
        <mrna_strand>TTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGGTGCAGCAGTCGAATATGCAGTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276201" ref_strand="+" ref_description="SGN-E276201 [cLEN-21-B19]">
      <seq>tttactcttttttaagcgttttattcattctcctctttctcccttagcttcatcatgaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14882" stop="18433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15182" g_stop="15272" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="153" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="294" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="460" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18133" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="497" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E276201" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15182" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATG</genome_strand>
        <mrna_strand>TTTACTCTTTTTTAAGCGTTTTATTCATTCTCCTCTTTCTCCCTTAGCTTCATCATGAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212713" ref_strand="+" ref_description="SGN-E212713 [cLEC-73-D19]">
      <seq>tttactcttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttgggttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14882" stop="18119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15182" g_stop="15272" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="153" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="294" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="460" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18109" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="473" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E212713" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15182" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTG</genome_strand>
        <mrna_strand>TTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGGTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248127" ref_strand="+" ref_description="SGN-E248127 [cLEF-55-A13]">
      <seq>tttactcttttttaagcgttttattcatcctcctctttctgccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaagcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagaaccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14882" stop="18038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15182" g_stop="15272" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="153" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="294" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17738" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="389" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E248127" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15182" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACA</genome_strand>
        <mrna_strand>TTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTGCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAAGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGAACCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262176" ref_strand="+" ref_description="SGN-E262176 [cLEG-58-F2]">
      <seq>ctcttttttaagcgttttattcatcctcctctttctcccttagcttcatcttcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14886" stop="18106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15186" g_stop="15272" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="149" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="290" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="339" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17806" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="453" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E262176" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15186" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGAT</genome_strand>
        <mrna_strand>CTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCTTCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550893" ref_strand="+" ref_description="SGN-E550893 [TUS-54-D4]">
      <seq>cttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccnatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14888" stop="19400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15188" g_stop="15272" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="147" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="288" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="337" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="454" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="508" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19100" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="534" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E550893" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15188" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCA</genome_strand>
        <mrna_strand>CTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCNATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688616" ref_strand="+" ref_description="SGN-E688616 [t3_tus_54_D04]">
      <seq>cttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccnatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14888" stop="19400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15188" g_stop="15272" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="147" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="288" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="337" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="454" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="508" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19100" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="534" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E688616" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15188" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCA</genome_strand>
        <mrna_strand>CTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCNATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266904" ref_strand="+" ref_description="SGN-E266904 [cLEI-7-M9]">
      <seq>tttttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaagcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttgggttttgcttgctctgattctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14889" stop="18021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15188" g_stop="15272" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="147" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="288" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="337" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17721" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="366" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E266904" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15188" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCG</genome_strand>
        <mrna_strand>TTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAAGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGGTTTTGCTTGCTCTGATTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257800" ref_strand="+" ref_description="SGN-E257800 [cLEG-39-I17]">
      <seq>tttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14890" stop="19393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15190" g_stop="15272" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="145" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="286" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="335" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="452" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="506" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19093" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="525" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E257800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15190" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGA</genome_strand>
        <mrna_strand>TTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324677" ref_strand="+" ref_description="SGN-E324677 [cTOC-8-C3]">
      <seq>ttttaagcgttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14891" stop="19446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15191" g_stop="15272" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="144" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="285" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="334" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="451" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="505" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19146" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="577" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E324677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15191" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGAT</genome_strand>
        <mrna_strand>TTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256916" ref_strand="+" ref_description="SGN-E256916 [cLEG-44-I3]">
      <seq>aagcgttttattcatccttctctttctcccttagcttcatcatcggggaaaatgactttattttctaccagtcgagaggttgcgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14895" stop="18418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15195" g_stop="15272" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="140" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="281" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="330" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="447" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18118" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="469" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E256916" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15195" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTG</genome_strand>
        <mrna_strand>AAGCGTTTTATTCATCCTTCTCTTTCTCCCTTAGCTTCATCATCGGGGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTGCGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257801" ref_strand="+" ref_description="SGN-E257801 [cLEG-39-I19]">
      <seq>aagcgttttattcattttcctctttctcccttagcttcatcatcaacgagggggactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaagcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14895" stop="16192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15195" g_stop="15272" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="140" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="281" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E257801" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15195" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA</genome_strand>
        <mrna_strand>AAGCGTTTTATTCATTTTCCTCTTTCTCCCTTAGCTTCATCATCAACGAGGGGGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAAGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332376" ref_strand="+" ref_description="SGN-E332376 [cTOD-17-G7]">
      <seq>ttttattcatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14900" stop="19411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15200" g_stop="15272" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="135" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="276" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="325" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="442" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="496" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19111" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="533" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E332376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15200" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTG</genome_strand>
        <mrna_strand>TTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697285" ref_strand="+" ref_description="SGN-E697285 [FA02AD06]">
      <seq>cccttcatcctcctctttctcccttagcttcatcatcaacgaccatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaaaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttgggatattgacttccaacttactccttctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14905" stop="20513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15202" g_stop="15272" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="133" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="274" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="323" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="440" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="494" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="580" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="686" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20057" g_stop="20213" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="842" r_length="156" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E697285" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15202" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTG</genome_strand>
        <mrna_strand>CCCTTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGACCATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAA-AAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGGATATTGACTTCCAACTTACTCCTTCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724647" ref_strand="+" ref_description="SGN-E724647 [FC24DA06]">
      <seq>ggcgattggcggccaatcggccgaattgatcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaaaataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14904" stop="20549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15204" g_stop="15272" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="93" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="155" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="296" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="345" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="462" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="516" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="602" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="708" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20057" g_stop="20249" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="901" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E724647" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15204" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAA</genome_strand>
        <mrna_strand>ATTGATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAAATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704449" ref_strand="+" ref_description="SGN-E704449 [FA24BC11]">
      <seq>atcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14908" stop="20498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15208" g_stop="15272" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="127" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="268" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="317" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="434" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="488" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="574" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="680" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20057" g_stop="20198" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="822" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E704449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15208" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAAC</genome_strand>
        <mrna_strand>ATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247662" ref_strand="+" ref_description="SGN-E247662 [cLEF-42-E5]">
      <seq>atcctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14908" stop="20011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15208" g_stop="15272" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="127" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="268" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="317" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="434" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="488" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="574" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19711" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="667" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E247662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15208" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCAC</genome_strand>
        <mrna_strand>ATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727950" ref_strand="+" ref_description="SGN-E727950 [LA16AH12]">
      <seq>cctcctctttctcccttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactaggggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14910" stop="20467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15210" g_stop="15272" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="125" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="266" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="315" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="432" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="486" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="572" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="678" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20057" g_stop="20167" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="790" r_length="112" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E727950" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15210" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTA-GGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGA</genome_strand>
        <mrna_strand>CCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250105" ref_strand="+" ref_description="SGN-E250105 [cLEG-4-D11]">
      <seq>tctttctcccttagcttcatcatcaacgaaaatgactttattttctaccaggcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaagcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14915" stop="18038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15215" g_stop="15272" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="120" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="261" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="310" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17738" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="356" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E250105" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15215" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACA</genome_strand>
        <mrna_strand>TCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGGCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAAGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297058" ref_strand="+" ref_description="SGN-E297058 [cLEW-7-L15]">
      <seq>ccttagcttcatcatcaacgaaaatgactttattttttaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtcctacccggacgagaagatccgatccggattcgctcatttgaaggcggagaaatatgagaaaaatccggagttagtttggacaacttgccaaaggtcaaagccgtaagttcttggttttagcttgctctgattctcgagtaagcccatcacacatcctgaatttccaaccaggagaagcttttgttgtccgtaacatcgtcaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcacacgaatatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14923" stop="18435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15223" g_stop="15272" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="112" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="253" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="303" r_length="50" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.767" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="420" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18135" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="459" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E297058" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15223" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTT-GTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCA</genome_strand>
        <mrna_strand>CCTTAGCTTCATCATCAACGAAAATGACTTTATTTTTTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCTACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTGAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTAGTTTGGACAACTTGCCAAAGGTCAAAGCCGTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTAGCTTGCTCTGATTCTCGAGTAAGCCCATCACACATCCTGAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGTCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCACACGAATATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270346" ref_strand="+" ref_description="SGN-E270346 [cLEM-1-A4]">
      <seq>ttagcttcatcatcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacgggcggagcnttngggtagttaaancaaggctagggtgcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14925" stop="19463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15225" g_stop="15272" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="110" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15664" i_length="161">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15665" g_stop="15693" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="137" r_length="27" r_score="0.448"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15694" i_stop="15747" i_length="54">
            <donor d_prob="0.955" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="274" r_length="137" r_score="0.759"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="323" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="440" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="494" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="580" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E270346" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15225" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15665" e_stop="15693"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG</genome_strand>
        <mrna_strand>TTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG.................................................................................................................................................................TGAAAAGAATGAGCT-GG-AAGATACAGC......................................................TGCGGCGAA-GATAAGGCAG-TTGACGGGCGGAG-CNTTNGGGTAGTT-AAANCAAGGCTAGGGTGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274601" ref_strand="+" ref_description="SGN-E274601 [cLEN-11-D11]">
      <seq>atcaacgaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14936" stop="19946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15236" g_stop="15272" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="99" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="240" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="289" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="406" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="460" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="546" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19619" g_stop="19646" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="574" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E274601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15236" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATC</genome_strand>
        <mrna_strand>ATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264874" ref_strand="+" ref_description="SGN-E264874 [cLEG-71-D7]">
      <seq>gaaaatgactttattttctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14942" stop="18109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15242" g_stop="15272" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="93" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="234" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="283" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="400" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E264874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15242" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGACTTTATTTTCTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG</genome_strand>
        <mrna_strand>GAAAATGACTTTATTTTCTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255200" ref_strand="+" ref_description="SGN-E255200 [cLEG-31-O24]">
      <seq>ctaccagtcgagaggttacgaaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15133" stop="18038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15259" g_stop="15272" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15442" g_stop="15503" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="76" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="217" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="266" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17693" g_stop="17738" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="312" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E255200" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15259" e_stop="15272"/>
          <exon e_start="15442" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAGTCGAGAGGTATATTCAAAATCTCATAAATCATTTGTTTTCTTCGTAATTTCACCTCTTTATTCTGATTCAATACTCTCCAATTCAAATTGAATTTCACTCAATTTTCGCATATACGATCGTTGAATTATCAAAACAAGTTAATCACGATCGTTTTATTTTTTTTTTTGACTTGCAGGTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACA</genome_strand>
        <mrna_strand>CTACCAGTCGAGAG.........................................................................................................................................................................GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283080" ref_strand="+" ref_description="SGN-E283080 [cLER-17-N14]">
      <seq>aaaatggcggaagattcatacgaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatnctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15148" stop="18433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15448" g_stop="15503" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="197" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="246" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="363" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18097" g_stop="18133" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="400" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E283080" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15448" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATG</genome_strand>
        <mrna_strand>AAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATNCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257888" ref_strand="+" ref_description="SGN-E257888 [cLEG-39-D18]">
      <seq>aaaatggcggaatattcatactaagacgccattgcaggactgggggagcttgtcagtgaaaagaatgagctggaatatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcattttaaggcggagaaatatgataaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttctcggttattgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagctcttgttgtccgtaacatcgccaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15148" stop="18091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15448" g_stop="15503" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="197" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="246" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.767" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17693" g_stop="17791" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="345" r_length="99" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E257888" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15448" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATG</genome_strand>
        <mrna_strand>AAAATGGCGGAATATTCATACTAAGACGCCATTGCAGGACTGGGGGAGCTTGTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAATATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTTAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGGTTATTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTCTTGTTGTCCGTAACATCGCCAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723842" ref_strand="+" ref_description="SGN-E723842 [FC22AF05]">
      <seq>gaagacgccattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagtttttcttcttctttacttgatttgcattttgatgtaaatgtattactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15169" stop="20616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15469" g_stop="15503" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="176" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="225" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="342" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="396" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="482" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="588" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20057" g_stop="20316" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="848" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E723842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15469" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTG</genome_strand>
        <mrna_strand>GAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709877" ref_strand="+" ref_description="SGN-E709877 [FA53CB03]">
      <seq>cgcattgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagtttttcttcttctttacttgatttgcattttgatgtaaatgtattactgaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15175" stop="20623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15474" g_stop="15503" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="170" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="219" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="336" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="390" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="476" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="582" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20057" g_stop="20323" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="849" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E709877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15474" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACA</genome_strand>
        <mrna_strand>CG-CATTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709866" ref_strand="+" ref_description="SGN-E709866 [FA53CA03]">
      <seq>ccgtttgcaggactgaaaaagcttctcagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactcntaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagtttttcttcctctttacttgatttgcattttgatgtaaatgtattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15179" stop="20614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15475" g_stop="15503" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="170" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="219" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="336" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="390" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="476" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="582" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20057" g_stop="20314" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="840" r_length="258" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E709866" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15475" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTAC</genome_strand>
        <mrna_strand>CCGTTTGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCNTAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCCTCTTTACTTGATTTGCATTTTGATGTAAATGTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250926" ref_strand="+" ref_description="SGN-E250926 [cLEG-13-K24]">
      <seq>catggcaggactgaaaaagcttctcagtgaaaagaatgagctgggagatacagctgcggcgaagataaagcagttgacggcggagctggaaagcgccgacagcaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15177" stop="19951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15477" g_stop="15503" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="168" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="217" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="334" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="388" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="474" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19619" g_stop="19651" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="507" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E250926" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15477" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCAGGACTGAAAAAGCTTCTCAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTC</genome_strand>
        <mrna_strand>CATGGCAGGACTGAAAAAGCTTCTCAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGGAGATACAGCTGCGGCGAAGATAAAGCAGTTGACGGCGGAGCTGGAAAGCGCCGACAGCAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715908" ref_strand="+" ref_description="SGN-E715908 [FB15CD09]">
      <seq>cagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtctactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagtttttcttcttctttacttgatttgcattttgatgtaaatgtattactgaacaacagtgtggtgtgtcatcacataaataatgtttaaatggctgttttcagcttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15446" stop="20676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15501" g_stop="15503" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="144" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="193" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="310" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18097" g_stop="18124" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="338" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18125" i_stop="19103" i_length="979">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19104" g_stop="19160" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="395" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="501" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20057" g_stop="20376" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="821" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E715908" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15501" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18124"/>
          <exon e_start="19104" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAG</genome_strand>
        <mrna_strand>CAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCTACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTTAAATGGCTGTTTTCAGCTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715482" ref_strand="+" ref_description="SGN-E715482 [FB14BF07]">
      <seq>cagtgaaaagaatgagctggaagatacagctgcggcgaagataaggcagttgacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtctactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagtttttcttcttctttacttgatttgcattttgatgtaaatgtattactgaacaacagtgtggtgtgtcatcacataaataatgttaaaatggctgttttcagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15446" stop="20672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15501" g_stop="15503" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15748" g_stop="15888" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="144" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="193" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="310" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18097" g_stop="18124" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="338" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18125" i_stop="19103" i_length="979">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19104" g_stop="19160" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="395" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="501" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20057" g_stop="20372" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="817" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E715482" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15501" e_stop="15503"/>
          <exon e_start="15748" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18124"/>
          <exon e_start="19104" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTATAGAAAGCAGACTTTTCCATTTTTTGTCCTTTTCCATCAGGACTTTCTGTATCTTTCATAACGTAATTACTGTGATGAATTCTGTCCTGATCCGTAATTTCACGGTTTCCGATAAAAACGGAAAGTGATTTCATCCTCCAATCCTCTAACTGTTTGTCTGTCTACATTACACTGGGTCCCACACGGAGTGAGTAATTTAATATTTGTTTTTTTTTAATTATTGTTTTTTTGTGGTTGGTAGTGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTT</genome_strand>
        <mrna_strand>CAG....................................................................................................................................................................................................................................................TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCTACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275096" ref_strand="+" ref_description="SGN-E275096 [cLEN-9-A18]">
      <seq>ggcagtggacggcggagctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttaaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcacagccctaggttcttggtttttgcttgctctcattgtcgagtctgcccatcacacatactcgatttccaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15489" stop="18054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15789" g_stop="15888" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="149" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.767" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17693" g_stop="17754" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="211" r_length="62" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E275096" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15789" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACC</genome_strand>
        <mrna_strand>GGCAGTGGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTAAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCACAGCCCTAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTCATTGTCGAGTCTGCCCATCACACATACTCGATTTCCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275829" ref_strand="+" ref_description="SGN-E275829 [cLEN-18-N1]">
      <seq>agctggaaggcgccgacgggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15504" stop="19426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15804" g_stop="15888" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="134" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="251" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="305" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19075" g_stop="19126" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="357" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E275829" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15804" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGAC</genome_strand>
        <mrna_strand>AGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303835" ref_strand="+" ref_description="SGN-E303835 [cLEX-4-L16]">
      <seq>ggaaaaagtccgacccggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaagaagctgtgaatgtatcactagggaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15522" stop="20386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15822" g_stop="15888" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="116" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="233" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="287" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="373" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="479" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20057" g_stop="20086" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="509" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E303835" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15822" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTA</genome_strand>
        <mrna_strand>GGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAA............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253147" ref_strand="+" ref_description="SGN-E253147 [cLEG-26-G5]">
      <seq>cggacgagaagatccgatccggattcgctcatttcaaggcggagaaatatgagaaaaatccggagttgtttggacaacttgccaaaggtcaaagccctaagttcttggtttttgcttgctctgattctcgagtttgcccatcacacatcctcaatttccaaccaggagaagcttttgttgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaacgaagctgtgaatgtatcactaaggaacttattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15537" stop="20390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15837" g_stop="15888" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17135" g_stop="17183" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="101" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17693" g_stop="17809" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="218" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="272" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="358" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="464" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20057" g_stop="20090" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="498" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E253147" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15837" e_stop="15888"/>
          <exon e_start="17135" e_stop="17183"/>
          <exon e_start="17693" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGAGTAAGTTAAAATTAGGAAATTGTACTTTACCGTAAATAAATTCTGTCCTATAAAAGTTACGTCCGAACCTTTGTGGCATCAAATATTGCATCATACTCGAATATGCTGCCAGTTTTTTTTTTCAAAAAAAAATTAAATTAAAAATATTATAATAAATTTAATTATTTCTAAACAAATAATAAATGAAGAAGTTAAATCGATATTTAAAAAGAAATCGAGAGGATATTGAGTTTGACTTTATTCAAAATTAATTATATATTTTCCATTATTGAATGTGAAAAGTTGACTCCCACCGTGTGAAAATATTACTCAATTGAATTGTTAATAGTGATTAGATATTACTTGGTACTCTCCTTAAATTTATTTTTATTTGTCACTTAAATCTAAAATATAAAAAATAAAATGGTGGGTCACTTAATTATCCTGTAGATATGTCTCTCTTTCAGAGCTTTCATTAATGTTGATAGAATTTATGTCATTTTATAATAGTAGTACAAGAAGGTATTAATGATTTTATTCTAACTTCACTTTTAAGGTTTAAACTATTCTAACAAGGTCATATTGTACTTTGGAAAAGAAAATTATATGTAATTTAATAACTAATGATATTAAACACATGTCTTAGTATTAGTACATATTAAAAGTCATTAATTTATAAACAAATAAAAATAAACAATATCAGATATCAGAAAACATCTTGATAGTTCTAAAAATGAAATGAAAGCTATGGAAAATAATTATTTGATATGAGTGATTGCCAAGTGTTCAACTTGTGTCTAGAAAATAGTGGAATCTTGATCATTGAAGGTCTACCCTTGTATTATATGCCCACTATATTTCTTGTATAAAATTATGGTCCTACATTGATGAGGAAAAGACTTTCAAATTAATGGAGTATAATATGGCACGTCTTGGACTACATAAAAGGTTAGCTAAAAAGATTTGTGAGAACAAGTTGTTTTCGATAGAGAATTTTAAGTTTATTTCCAACTAATGCTTGAAAGTAAAAGCATATTTAAAAATTCACTAAGAAAATTTAAGAATCCTACACTTAAATGATTAGAGGAATGATATATCACCTAATTCTCTTATTCGTGGGGTTAATTATTTATCTAGTCTAAAAGCTAAGGAATATTAATAATTTGAAAAGCTTCTTTGCATAGTTTTAGTAAATATTTACGCCAAAAATAATTATGTTAAACATCTTTAAATTCTTAACCTTGATTTTTGTACTTTTATTTTATAGGAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAGGTAAATCATAATATTCGTTCATTTTTATTTATCGATTTTAAATTTTACATATTTTTCAAGAAATAGTAATAATTAACATGAATATTTATTCACAATTTAAAATATTATATAACAATTTAAATAAAAGTGAACATAGTTAATCATGGCCTTGGTTTGTTAATCTAGTTATTTCCTATGATCAAAAGCTTATAGAAAAAATTATCCTTTAACGATGATTTCTCACCTTATAAAGAATTATATATATATATTATTTTTTGTCTTTTTCCTCCAATCAAAGCTCTCAAGAATAATAATTATTCTCTCCTGCATATATACTCTTAGGCGTTATTCCCTATTATATCCCAAACTATTATAATGTAAATCAACATCATACTTGCCGTCCAAAATGTGAATTTTGTTCCTAAATATTGAACTTAGTTATTTTTTTTTGGGAATGCAAAACAATGGTAATGACGTTTAAGGCACGTTAATGAGTACTTATGTATAATTTGTGATTAAATTACGTGCAGTTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGA</genome_strand>
        <mrna_strand>CGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAC............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAAGGAACTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240212" ref_strand="+" ref_description="SGN-E240212 [cLED-25-G18]">
      <seq>tgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagtttttcttcttctttacttgatttgcattttgatgtaaatgtattactgaacaacagtgtggtgtgtcatcacttaaataatgttaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17470" stop="20657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17770" g_stop="17809" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="94" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="180" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="286" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20057" g_stop="20357" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="587" r_length="301" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E240212" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17770" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAAT</genome_strand>
        <mrna_strand>TGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACTTAAATAATGTTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232108" ref_strand="+" ref_description="SGN-E232108 [cLED-7-F18]">
      <seq>tgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagattttcttcttctttacttgatttgcattttgatgtaaatgtattactgaacaacagtgtggtgtgtcatcacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17470" stop="20643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17770" g_stop="17809" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="94" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="180" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="286" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20057" g_stop="20343" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="573" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E232108" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17770" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATA</genome_strand>
        <mrna_strand>TGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGATTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235900" ref_strand="+" ref_description="SGN-E235900 [cLED-16-K12]">
      <seq>tgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17470" stop="20502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17770" g_stop="17809" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="94" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="180" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="286" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20057" g_stop="20202" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="432" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E235900" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17770" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTAC</genome_strand>
        <mrna_strand>TGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239478" ref_strand="+" ref_description="SGN-E239478 [cLED-23-N15]">
      <seq>tgtccgtaacatcgccaatatggtcccaccttacgatcagacaaaatattctggagtgggtgcagcagtcgaatatgcagttgtccacttgaaggtggagaatattttggtgattgggcacagctgttgtggaggtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17470" stop="20491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17770" g_stop="17809" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18097" g_stop="18150" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="94" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19075" g_stop="19160" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="180" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="286" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20057" g_stop="20191" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="421" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E239478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17770" e_stop="17809"/>
          <exon e_start="18097" e_stop="18150"/>
          <exon e_start="19075" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAGGTAAATTACTGATGATCTGCTTACATGACGTTTTTTTCGAGTTAAAAAGTCTAAAAAGACAAATAGTGTACCATGCTGGAGACTTAATGAACAAGAATTAAAAAAAAATTGAAAAGAAAAGAAAGTAAAAGATCAAAATAATGATGTGGATATTTATGGCATAAAGTTTAGATTAATATTCTTAGTTGAATTGCAGATACTTTAACCCATATTTATTATTTATCCTCTACTTTTTCCACGTTATTCTTAATTTAAACTCTAATTTTGTTGTTAACTATACATTACAGACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAGGTCAGTCATTTTTATGACAATTTGAAATTTATTTTTATATCTCTACTTAATTAATATTTTAATTAATAATTAATAAAGGTAGCTCATTTTATCCTAATTAATTATGAGGTCAAGAACAAAGTACATGTCTTTTAGCCTGTTATTTTATGGTCCAATATTGGTCCAAAGATACCTAATTTAATTAAAGATATTCCTTTCTTACTTAACTTCTCCTCATATTTATATAAAAAATTGAAAATGTCAACTTGTTATGACATTGACCTTTTTATAATTATCTAAAATTAAGAAAGAAAAATTTGACATTTTTTAAATTGCCGAGCCTAATTTACCATCTCCTCAGTTTTGCTCAATAATATTTATATTAATCATTACTTCGAACACGAGTCATTCTATCTTTTGATTTAGCAGAACGATGATCACGTTTAATCGAGGATATTGTAATACCCTAAACTTCTCCTAATTTAGAAACATTTTCAAACTTTCTAAATATTATTTTGTGTAACTTTTCAGAGACAATATTTCTATTAACTTCAGTCCAACAGGATCTACTTGTCTGATTTGGTCTGTACCTCAAATTGCACCCCATGTGCATGTTAGAAACCAAAAACATGTAAATTAGATTAGCTCAAGACTTCAGCCTTAAGTATAGGGATTAGTACAAATCATTTAAAATTTTGATAATCTTTAATTTAATTGCCCATACTTGTCCTTTTTCCTATATATTTGGAGTTGTAAATGAAGCAAATGCAAATCAAAATACACATTTTAGTTACTTCATTAGTTCTTAACTTAACTTAAGCCTTAAGAAAGTAGGGATTAGTAAAATCATTTTTTTTTAAAAAATAATTACCTGTATTTTCCCTTTTTTCTCCTATTTATTTGGAGTTGTGAATTTAAAAATGAATAAAATTTGTACAATTATAGGTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGAC</genome_strand>
        <mrna_strand>TGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG...............................................................................................................................................................................................................................................................................................ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249161" ref_strand="-" ref_description="SGN-E249161 [cLEF-50-G5]">
      <seq>gtattaaaggacttatgtctattcctgatgatgggtccactaaaagtgatttcattgaggaatgggtgaaaatctgctcaacagccaaggcaaaggtaaaggcagaattctgtgatttggatcccagtgaacaatgccccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagtttttcttcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="18815" stop="20582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19115" g_stop="19160" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19619" g_stop="19724" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="152" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20057" g_stop="20282" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="378" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E249161" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249161" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19115" e_stop="19160"/>
          <exon e_start="19619" e_stop="19724"/>
          <exon e_start="20057" e_stop="20282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAGGTTGGGTTTTTATTAATTTTTAATTAATTAAACAACTATATAATGATTGATAATGAAAGTGGACTTATCAATAAGTGAATAGTCACCCTTATAAAGTTGTTGATAAATAAAAGATGATCAGTCCACTTGACTTTTTTTTTATAAAAAAAATCTACTCATCAATCTTTTTTTTTACTTTATTTGTTTATAAATTGTACTCTCTTTTGTCCCTTTTATCTGTCATGTAGTTCTTATACACATACTTAAAAAAAAAAGAGAGAAGATTTTTCTCCATTTATGTGATATTTTTTATCTTTTCAAATGTTAAATTTGATTAATTTAATTTTTTTTGTTAAAATCTGTATATTCAAAAGCTATATAAAAGTATTATGATCGATTAAGTTTTATGTAATATGAATATCGAAAAATGAAATTATATTTAAAGGTCTTCTTATACTTTGAGTACATTAAAAATGCAGTGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTT</genome_strand>
        <mrna_strand>GTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCCCAGTGAACAATGCCCCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241839" ref_strand="+" ref_description="SGN-E241839 [cLED-27-O9]">
      <seq>agaattctgtgatttggatcacagtgaacaatgcaccaaattggagaaggaagctgtgaatgtatcactagggaacttattgacatatccatttgtgagagaagctgtggtgaagaaaaacattgcactaaaaggtggacactatgattttgagaatggatcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagtttttcttcttctttacttgatttgcattttgatgtaaatgtattactgaacaacagtgtggtgtgtcatcacataaataatgttaaaatggctgttttcagcttttagcttagaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="19376" stop="20686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19676" g_stop="19724" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20057" g_stop="20387" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="380" r_length="331" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E241839" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19676" e_stop="19724"/>
          <exon e_start="20057" e_stop="20387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAGGTAATTACTTAATTAATTCATGTGATACAATTTTTTTTCTATAGATATTTGTCGCAAGAAAATAATAAATATTTTTCTATATTCAAAAAGTAATTTAACTTTAATTTTCTCATTTTACTCTCACTGAAAAGCTGGTCCAAACCAGTTCTTGGGTGACATTTCACTTTACAACTTTAACTTTTTTCTAAAAAAAAATGCACGTTCAGACACAACTTTACAAAACTTATAGATTTGCGAGTTTCAAAAACATCTCTTAAACTTTGTGTTCAGTCAAAATGCGAAAAAACATAAATGTGATGTTACTTATTTTTTTGGTATATGATGTTGAGCAGGAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTAAT</genome_strand>
        <mrna_strand>AGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG............................................................................................................................................................................................................................................................................................................................................GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718648" ref_strand="+" ref_description="SGN-E718648 [FC05BD03]">
      <seq>atcctttgagctttggaatattgacttcaaacttactccttctgttgcactctaaatatgttgcaaaattttcatataaccaattgtaattgtgtttcaagtttttcttcttctttacttgatttgcattttgatgtaaatgtattactgaacaacagtgtggtgtgtcatcacataaataatgttaaaatggctgttttcagcttttagcttaatgtaatctacttgtgtttttttttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="19867" stop="20710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20167" g_stop="20407" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20408" i_stop="20558" i_length="151">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20559" g_stop="20582" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="265" r_length="24" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="266" polyA_stop="288"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E718648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20167" e_stop="20407"/>
          <exon e_start="20559" e_stop="20582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTAATCTACTTGTGTTTTTTTTTCACAACCTTCCTTTTTTGATGAGCCAAATATCTTACTCATACTTGTTTGATTCTACTTTCAAAAGTGAAGGCACCTGATTCCTTTAATCAGCATAGACCTATTAGTTTTAAATATTTAGAATAATAAAGAAAACACAATCTTCAACAAAACAGAAACAATGAAAAGAAGAAAATCGA</genome_strand>
        <mrna_strand>ATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTAATCTACTTGTGTTTTTTTTTCA.......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234002" ref_strand="+" ref_description="SGN-E234002 [cLEL-8-B17](-)">
      <seq>gtggtgacatcaaatgaagagatgttgaagaaactgaanccatacttggaaagtgggaaggtgaaaccnagtgatagatccaaagggaccattctcatttgataaggttgtggatgctttctcttatcttgaaactggaagagccactgggaaagttgttattcatcccattccttgaaagttagctcttattttgtacaatttctaatacatttagggaaaaggagaagtttttgttcctcaaagcctattgtggcatgtggttgatgaaaataagatgtatctatgttgatcatgttggacacacaaataattacttaggaggatttttgtgttcactctttcttagacatggttttaccaacttttgaatccatagcaaattgaattttaaaaaaatgaaacatgttttcatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="21638" stop="20618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21338" g_stop="20922" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="433"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E234002" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21338" e_stop="20922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACC-AGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTGTTCACTCTTTCTTAGACATGGTTTTACCAACTTTTGAATCCATAGCAAATTGAATTTTAAAAAAATGAAACATGTTTTCATGAA</genome_strand>
        <mrna_strand>GTGGTGACATCAAATGAAGAGATGTTGAAGAAACTGAANCCATACTTGGAAAGTGGGAAGGTGAAACCNAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTGTTCACTCTTTCTTAGACATGGTTTTACCAACTTTTGAATCCATAGCAAATTGAATTTTAAAAAAATGAAACATGTTTTCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323134" ref_strand="+" ref_description="SGN-E323134 [cTOB-28-N5]">
      <seq>tcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccattcttgttttgggaggtgctggcggtgttggatccctagtaatccagcttgctaaacatgtatttggtgcttctaaagtagcagctacctctagcacagggaagttggaactcctgaaaagcttaggagctgatttagctattgactacactaaggagaattttgaagatctgcctgacaagtttgatgttgtttatgattcagttggtcagggtgaaaaggcggtgaaggtagtgaaggaaggtgggagtgtggtagtgctaacaggggcagtaactccaccaggttttagatttgtggtgacatcaaatggagagatgttgaagaaactgaacccatacttggaaagtgggaaggtgaaaccagtgatagatccaaagggaccattctcatttgataaggttgtggatgctttctcttatcttgaaactggaagagccactgnngaaagttgttattcatcccattccttgaaagttagctcttattttgtacaatttctaatacatttaggnaaaaaggagaagtttttgttcctcaaagcctattgtggcatgtggttgatgaaaataagatgtatctatgttgatcatgttggacacacaaatattactttaggaggatttttgtgttcactctttcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="23003" stop="20692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22703" g_stop="22589" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22076" g_stop="21917" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="275" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21427" g_stop="20991" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="714" r_length="439" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E323134" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22703" e_stop="22589"/>
          <exon e_start="22076" e_stop="21917"/>
          <exon e_start="21427" e_stop="20991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTGGTAAGAAATTAGTTTCAACTTTGAAAATTTCCGTTCTTGTAAACGCATTGTCAGGCACGTACAAATTTAACATAACACATAGGTAACTAAATAGTTTAACAGTTAATAATAGTGAACATTCACGAGTATAAAGATTAAAACTGCATATTTTGAATCAATTGATGATCAAAAACTACAATTGCAAAATTTCCTTGATAAATTCTGAACTCATCATTTCATAAGTACAATGTTGGGATCTTTACATAAATAGCCCGCCCAATTCATTATGTACTTTCTCTAGCCGGTCTACATAAATTATGTACTGATTATAAATGGTTATATACAGATTATACATCTGACGGTTATCTTTAGTTTAAGCTGTTGAGAGGGCTGCTATTTAGGTTAATTCTTCTACAATGTTTTCAGCGCTAAGAATCTTCCATCGATTTTAATTAGATTTTGGATCTGCTTCTACTAACAACTATCTCCTCCTCTTGGTACTGACTACAGGTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTG-GGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGG-AAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTGTTCACTCTTTCTTAG</genome_strand>
        <mrna_strand>TCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGNNGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGNAAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATATTACTTTAGGAGGATTTTTGTGTTCACTCTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253309" ref_strand="-" ref_description="SGN-E253309 [cLEG-26-F21]">
      <seq>tgacaagtttgatgttgtttatgattcagttggtcagggtgaaaaggcggtgaaggtagtgaaggaaggtgggagtgtggtagtgctaacaggggcagtaactccaccaggttttagatttgtggtgacatcaaatggagagatgttgaagaaactgaacccatacttggaaagtgggaaggtgaaaccagtgatagatccaaagggaccattctcatttgataaggttgtggatgctttctcttatcttgaaactggaagagccactgggaaagttgttattcatcccattccttgaaagttagctcttattttgtacaatttctaatacatttagggaaaaggagaagtttttgttcctcaaagcctattgtggcatgtggttgatgaaaataagatgtatctatgttgatcatgttggacacacaaataattacttaggaggatttttgtggttcactctttcttgggaaaaaaaaaaaaatatgactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="22248" stop="20688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21948" g_stop="21917" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21427" g_stop="20993" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="468" r_length="436" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="486"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E253309" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253309" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21948" e_stop="21917"/>
          <exon e_start="21427" e_stop="20993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAAGTTTGATGTTGTTTATGATTCAGTTGGTAAGAAATTAGTTTCAACTTTGAAAATTTCCGTTCTTGTAAACGCATTGTCAGGCACGTACAAATTTAACATAACACATAGGTAACTAAATAGTTTAACAGTTAATAATAGTGAACATTCACGAGTATAAAGATTAAAACTGCATATTTTGAATCAATTGATGATCAAAAACTACAATTGCAAAATTTCCTTGATAAATTCTGAACTCATCATTTCATAAGTACAATGTTGGGATCTTTACATAAATAGCCCGCCCAATTCATTATGTACTTTCTCTAGCCGGTCTACATAAATTATGTACTGATTATAAATGGTTATATACAGATTATACATCTGACGGTTATCTTTAGTTTAAGCTGTTGAGAGGGCTGCTATTTAGGTTAATTCTTCTACAATGTTTTCAGCGCTAAGAATCTTCCATCGATTTTAATTAGATTTTGGATCTGCTTCTACTAACAACTATCTCCTCCTCTTGGTACTGACTACAGGTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGT-GTTCACTCTTTCTT</genome_strand>
        <mrna_strand>TGACAAGTTTGATGTTGTTTATGATTCAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTGGTTCACTCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746853" ref_strand="+" ref_description="SGN-E746853 [GI|47104429]">
      <seq>atttcatcttctttatcatgcacataaattgtttgaggaaaatactgagtgagaggttaaaaaaacagctggaaagaaagaagaacaatgaaagctctattatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaaattttccactgttttgccacttaaagtctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgccttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagcaggattttcttctggcaaatccgttcttgttttgggaggtgctggcggtgttggatccctagtaatccagcttgctaaacatgtatttggtgcttctaaagtagcagctacctctagcacagggaagttggaactcctgaaaagcttaggagctgatttagctattgactacactaaggagaattttgaagatctgcctgacaagtttgatgttgtttatgattcagttggtcagggtgaaaaggcggtgaaggcagtgaaggaaggtgggagtgtggtagtgctaacaggggcagtaacaccaccaggttttagatttgtggtgacatcaaatggagagatgttgaagaaactgaacccatacttggaaagtgggaaggtgaaaccagtgatagatccaaagggaccattctcatttgataaggttgtggatgctttctcttatcttgaaactggaagagccactgggaaaattgttattcatcccattccttgaaagttagctcttattttgtacaatttctaatacatttagggaaaaggagaagtttttgttcctcaaagcctattgtggcatgtggttgatgaaaataagatgtatctatgttgatcatgttggacacagaaataattacttagaaggatttttgtgttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24535" stop="20702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24235" g_stop="23969" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23968" i_stop="23793" i_length="176">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23792" g_stop="23732" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="328" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22912" g_stop="22589" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="652" r_length="324" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22076" g_stop="21917" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="812" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21427" g_stop="21002" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="1238" r_length="426" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1239" polyA_stop="1252"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E746853" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1238</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24235" e_stop="23969"/>
          <exon e_start="23792" e_stop="23732"/>
          <exon e_start="22912" e_stop="22589"/>
          <exon e_start="22076" e_stop="21917"/>
          <exon e_start="21427" e_stop="21002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCTTATCTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTGGTAAGAAATTAGTTTCAACTTTGAAAATTTCCGTTCTTGTAAACGCATTGTCAGGCACGTACAAATTTAACATAACACATAGGTAACTAAATAGTTTAACAGTTAATAATAGTGAACATTCACGAGTATAAAGATTAAAACTGCATATTTTGAATCAATTGATGATCAAAAACTACAATTGCAAAATTTCCTTGATAAATTCTGAACTCATCATTTCATAAGTACAATGTTGGGATCTTTACATAAATAGCCCGCCCAATTCATTATGTACTTTCTCTAGCCGGTCTACATAAATTATGTACTGATTATAAATGGTTATATACAGATTATACATCTGACGGTTATCTTTAGTTTAAGCTGTTGAGAGGGCTGCTATTTAGGTTAATTCTTCTACAATGTTTTCAGCGCTAAGAATCTTCCATCGATTTTAATTAGATTTTGGATCTGCTTCTACTAACAACTATCTCCTCCTCTTGGTACTGACTACAGGTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTGTTCA</genome_strand>
        <mrna_strand>ATTTCATCTTCTTTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGAGGTTAAAAAAACAGCTGGAAAGAAAGAAGAACAATGAAAGCTCTATTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAAATTTTCCACTGTTTTGCCACTTAAAGTCTCT................................................................................................................................................................................TAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCCTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCAGGATTTTCTTCTGGCAAATCCGTTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTGAAAAGGCGGTGAAGGCAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACACCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAATTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACAGAAATAATTACTTAGAAGGATTTTTGTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713011" ref_strand="+" ref_description="SGN-E713011 [FB06BH07]">
      <seq>tgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttttggcaaatccattcttgttttgggaggtgctggcggtgttggatccctagtaatccagcttgctaaacatgtatttggtgcttctaaagtagcagctacctctagcacagggaagttggaactcctgaaaagcttaggagctgatttagctattgactacactaaggagaattttgaagatctgcctgacaagtttgatgttgtttatgattcagttggtcagggtgaaaaggcggtgaaggtagtgaaggaaggtgggagtgtggtagtgctaacaggggcagtaactccaccaggttttagatttgtggtgacatcaaatggagagatgttgaagaaactgaacccatacttggaaagtgggaaggtgaaaccagtgatagatccaaagggaccattctcatttgataaggttgtggatgctttctcttatcttgaaactggaagagccactgggaaagttgttattcatcccattccttgaaagttagctcttattttgtacaatttctaatacatttagggaaaaggagaagtttttgttcctcaaagcctattgtggcatgtggttgatgaaaataagatgtatctatgttgatcatgttggacacacaaataattacttaggaggatttttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="23075" stop="20705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22775" g_stop="22589" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22076" g_stop="21917" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="347" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21427" g_stop="21005" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="770" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E713011" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22775" e_stop="22589"/>
          <exon e_start="22076" e_stop="21917"/>
          <exon e_start="21427" e_stop="21005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTGGTAAGAAATTAGTTTCAACTTTGAAAATTTCCGTTCTTGTAAACGCATTGTCAGGCACGTACAAATTTAACATAACACATAGGTAACTAAATAGTTTAACAGTTAATAATAGTGAACATTCACGAGTATAAAGATTAAAACTGCATATTTTGAATCAATTGATGATCAAAAACTACAATTGCAAAATTTCCTTGATAAATTCTGAACTCATCATTTCATAAGTACAATGTTGGGATCTTTACATAAATAGCCCGCCCAATTCATTATGTACTTTCTCTAGCCGGTCTACATAAATTATGTACTGATTATAAATGGTTATATACAGATTATACATCTGACGGTTATCTTTAGTTTAAGCTGTTGAGAGGGCTGCTATTTAGGTTAATTCTTCTACAATGTTTTCAGCGCTAAGAATCTTCCATCGATTTTAATTAGATTTTGGATCTGCTTCTACTAACAACTATCTCCTCCTCTTGGTACTGACTACAGGTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTGT</genome_strand>
        <mrna_strand>TGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTTTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732491" ref_strand="+" ref_description="SGN-E732491 [LB02BC08]">
      <seq>agtctggtaaagggattaaaagaaggggatgaagtatatggagaattttgaagatctgcctgacaagtttgatgttgtttatgattcagttggtcagggtgaaaaggcggtgaaggtagtgaaggaaggtgggagtgtggtagtgctaacaggggcagtaactccaccaggttttagatttgtggtgacatcaaatggagagatgttgaagaaactgaacccatacttggaaagtgggaaggtgaaaccagtgatagatccaaagggaccattctcatttgataaggttgtggatgctttctcttatcttgaaactggaagagccactgggaaagttgttattcatcccattccttgaaagttagctcttattttgtacaatttctaatacatttagggaaaaggagaagtttttgttcctcaaagcctattgtggcatgtggttgatgaaaataagatgtatctatgttgatcatgttggacacacaaataattacttaggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="23167" stop="20717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22867" g_stop="22825" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22824" i_stop="21966" i_length="859">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21965" g_stop="21917" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="92" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21427" g_stop="21017" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="503" r_length="411" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="517"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E732491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22867" e_stop="22825"/>
          <exon e_start="21965" e_stop="21917"/>
          <exon e_start="21427" e_stop="21017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTGGTAAGAAATTAGTTTCAACTTTGAAAATTTCCGTTCTTGTAAACGCATTGTCAGGCACGTACAAATTTAACATAACACATAGGTAACTAAATAGTTTAACAGTTAATAATAGTGAACATTCACGAGTATAAAGATTAAAACTGCATATTTTGAATCAATTGATGATCAAAAACTACAATTGCAAAATTTCCTTGATAAATTCTGAACTCATCATTTCATAAGTACAATGTTGGGATCTTTACATAAATAGCCCGCCCAATTCATTATGTACTTTCTCTAGCCGGTCTACATAAATTATGTACTGATTATAAATGGTTATATACAGATTATACATCTGACGGTTATCTTTAGTTTAAGCTGTTGAGAGGGCTGCTATTTAGGTTAATTCTTCTACAATGTTTTCAGCGCTAAGAATCTTCCATCGATTTTAATTAGATTTTGGATCTGCTTCTACTAACAACTATCTCCTCCTCTTGGTACTGACTACAGGTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGA</genome_strand>
        <mrna_strand>AGTCTGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279975" ref_strand="+" ref_description="SGN-E279975 [cLEL-7-A5](-)">
      <seq>aagtaattatttgtgtgtccaacatgatcaacatagatacatcttattttaatcaaccacatgccacaataggctttgaggaacaaaaacttctccttttccctaaatgtattagaaattgtacaaaataagagctaactttcaaggaatgggatgaataacaactttcccagtggctcttccagtttcaagataagagaaagcatccacaaccttatcaaatgagaatggtccctttggatctatcactggtttcaccttcccactttccaagtatgggttcagtttcttcaacatctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20721" stop="21623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21021" g_stop="21320" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E279975" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21021" e_stop="21320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAATTATTTGTGTGTCCAACATGATCAACATAGATACATCTTATTTTCATCAACCACATGCCACAATAGGCTTTGAGGAACAAAAACTTCTCCTTTTCCCTAAATGTATTAGAAATTGTACAAAATAAGAGCTAACTTTCAAGGAATGGGATGAATAACAACTTTCCCAGTGGCTCTTCCAGTTTCAAGATAAGAGAAAGCATCCACAACCTTATCAAATGAGAATGGTCCCTTTGGATCTATCACTGGTTTCACCTTCCCACTTTCCAAGTATGGGTTCAGTTTCTTCAACATCTC</genome_strand>
        <mrna_strand>AAGTAATTATTTGTGTGTCCAACATGATCAACATAGATACATCTTATTTTAATCAACCACATGCCACAATAGGCTTTGAGGAACAAAAACTTCTCCTTTTCCCTAAATGTATTAGAAATTGTACAAAATAAGAGCTAACTTTCAAGGAATGGGATGAATAACAACTTTCCCAGTGGCTCTTCCAGTTTCAAGATAAGAGAAAGCATCCACAACCTTATCAAATGAGAATGGTCCCTTTGGATCTATCACTGGTTTCACCTTCCCACTTTCCAAGTATGGGTTCAGTTTCTTCAACATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734151" ref_strand="+" ref_description="SGN-E734151 [LB11DF10]">
      <seq>atccattcttgttttgggaggtgctggcggtgttggatccctagtaatccagcttgctaaacatgtatttggtgcttctaaagtagcagctacctctagcacagggaagttggaactcctgaaaagcttaggagctgatttagctattgactacactaaggagaattttgaagatctgcctgacaagtttgatgttgtttatgattcagttggtcagggtgaaaaggcggtgaaggtagtgaaggaaggtgggagtgtggtagtgctaacaggggcagtaactccaccaggttttagatttgtggtgacatcaaatggagagatgttgaagaaactgaacccatacttggaaagtgggaaggtgaaaccagtgatagatccaaagggaccattctcatttgataaggttgtggatgctttctcttatcttgaaactggaagagccactgggaaagttgttattcatcccattccttgaaagttagctcttattttgtacaatttctaatacatttagggaaaaggagaagtttttgttcctcaaagcctattgtggcatgtggttgatgaaaataagatgtatctatgttgatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="22940" stop="20745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22640" g_stop="22589" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22076" g_stop="21917" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="212" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21427" g_stop="21046" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="594" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="606"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E734151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22640" e_stop="22589"/>
          <exon e_start="22076" e_stop="21917"/>
          <exon e_start="21427" e_stop="21046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTGGTAAGAAATTAGTTTCAACTTTGAAAATTTCCGTTCTTGTAAACGCATTGTCAGGCACGTACAAATTTAACATAACACATAGGTAACTAAATAGTTTAACAGTTAATAATAGTGAACATTCACGAGTATAAAGATTAAAACTGCATATTTTGAATCAATTGATGATCAAAAACTACAATTGCAAAATTTCCTTGATAAATTCTGAACTCATCATTTCATAAGTACAATGTTGGGATCTTTACATAAATAGCCCGCCCAATTCATTATGTACTTTCTCTAGCCGGTCTACATAAATTATGTACTGATTATAAATGGTTATATACAGATTATACATCTGACGGTTATCTTTAGTTTAAGCTGTTGAGAGGGCTGCTATTTAGGTTAATTCTTCTACAATGTTTTCAGCGCTAAGAATCTTCCATCGATTTTAATTAGATTTTGGATCTGCTTCTACTAACAACTATCTCCTCCTCTTGGTACTGACTACAGGTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATC</genome_strand>
        <mrna_strand>ATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221507" ref_strand="+" ref_description="SGN-E221507 [cLEL-10-C2](-)">
      <seq>aaccagtgatagatccaaagggaccattctcatttgataaggttgtggatgctttctcttatcttgaaactggaagagccactgggaaagttgttattcatcccattccttgaaagttagctcttattttgtacaatttctaatacatttagggaaaaggaaaagtttttgttcctcaaagcctattgtggcatgtggttgatgaaaataagatgtatctatgttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="21574" stop="20748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21274" g_stop="21049" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="227" polyA_stop="243"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E221507" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21274" e_stop="21049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTG</genome_strand>
        <mrna_strand>AACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAAAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713413" ref_strand="+" ref_description="SGN-E713413 [FB08CC06]">
      <seq>gcggtgttggatccctagtaatccagcttgctaaacatgtatttggtgcttctaaagtagcagctacctctagcacagggaagttggaactcctgaaaagcttaggagctgatttagctattgactacactaaggagaattttgaagatctgcctgacaagtttgatgttgtttatgattcagttggtcagggtgaaaaggcggtgaaggtagtgaaggaaggtgggagtgtggtagtgctaacaggggcagtaactccaccaggttttagatttgtggtgacatcaaatggagagatgttgaagaaactgaacccatacttggaaagtgggaaggtgaaaccagtgatagatccaaagggaccattctcatttgataaggttgtggatgctttctcttatcttgaaactggaagagccactgggaaagttgttattcatcccattccttgaaagttagctcttattttgtacaatttctaatacatttagggaaaaggagaagtttttgttcctcaaagcctattgtggcatgtggttgatgaaaataagatgtatctannaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="22914" stop="20754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22614" g_stop="22589" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22076" g_stop="21917" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="186" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21427" g_stop="21053" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="561" r_length="375" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="563" polyA_stop="589"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E713413" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22614" e_stop="22589"/>
          <exon e_start="22076" e_stop="21917"/>
          <exon e_start="21427" e_stop="21053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTGGTAAGAAATTAGTTTCAACTTTGAAAATTTCCGTTCTTGTAAACGCATTGTCAGGCACGTACAAATTTAACATAACACATAGGTAACTAAATAGTTTAACAGTTAATAATAGTGAACATTCACGAGTATAAAGATTAAAACTGCATATTTTGAATCAATTGATGATCAAAAACTACAATTGCAAAATTTCCTTGATAAATTCTGAACTCATCATTTCATAAGTACAATGTTGGGATCTTTACATAAATAGCCCGCCCAATTCATTATGTACTTTCTCTAGCCGGTCTACATAAATTATGTACTGATTATAAATGGTTATATACAGATTATACATCTGACGGTTATCTTTAGTTTAAGCTGTTGAGAGGGCTGCTATTTAGGTTAATTCTTCTACAATGTTTTCAGCGCTAAGAATCTTCCATCGATTTTAATTAGATTTTGGATCTGCTTCTACTAACAACTATCTCCTCCTCTTGGTACTGACTACAGGTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTAT</genome_strand>
        <mrna_strand>GCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221907" ref_strand="+" ref_description="SGN-E221907 [cLEL-10-C2](-)">
      <seq>tgggagtgtggtagtgctaacaggggcagtaactccaccaggttttagatttgtggtgacatcaaatggagagatgttgaagaaactgaacccatacttggaaagtgggaaggtgaaaccagtgatagatccaaagggaccattctcatttgataaggttgtggatgctttctcttatcttgaaactggaagagccactgggaaagttgttattcatcccattccttgaaagttagctcttattttgtacaatttctaatacatttagggaaaaggagaagtttttgttcctcaaagcctattgtggcatgtggttgatgaaaataagatgtatctatgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="21690" stop="20748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21390" g_stop="21053" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="359"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E221907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21390" e_stop="21053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTAT</genome_strand>
        <mrna_strand>TGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253304" ref_strand="+" ref_description="SGN-E253304 [cLEG-26-D21]">
      <seq>acttctccttttccctaaatgtattagaaattgtacaaaataagagctaactttcaaggaatgggatgaataacaactttcccagtggctcttccagtttcaagataagagaaagcatccacaaccttatcaaatgagaatggcccctttggatctatcactggtttcaccttcccactttccaagtatgggttcagtttcttcaacatctctccatttgatgtcaccacaaatctaaaacctggtggagttactgcccctgttagcactaccacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20809" stop="21685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21109" g_stop="21385" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E253304" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21109" e_stop="21385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCCTTTTCCCTAAATGTATTAGAAATTGTACAAAATAAGAGCTAACTTTCAAGGAATGGGATGAATAACAACTTTCCCAGTGGCTCTTCCAGTTTCAAGATAAGAGAAAGCATCCACAACCTTATCAAATGAGAATGGTCCCTTTGGATCTATCACTGGTTTCACCTTCCCACTTTCCAAGTATGGGTTCAGTTTCTTCAACATCTCTCCATTTGATGTCACCACAAATCTAAAACCTGGTGGAGTTACTGCCCCTGTTAGCACTACCACAC</genome_strand>
        <mrna_strand>ACTTCTCCTTTTCCCTAAATGTATTAGAAATTGTACAAAATAAGAGCTAACTTTCAAGGAATGGGATGAATAACAACTTTCCCAGTGGCTCTTCCAGTTTCAAGATAAGAGAAAGCATCCACAACCTTATCAAATGAGAATGGCCCCTTTGGATCTATCACTGGTTTCACCTTCCCACTTTCCAAGTATGGGTTCAGTTTCTTCAACATCTCTCCATTTGATGTCACCACAAATCTAAAACCTGGTGGAGTTACTGCCCCTGTTAGCACTACCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712947" ref_strand="+" ref_description="SGN-E712947 [FB06BB02]">
      <seq>aatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccattcttgttttgggaggtgctggcggtgttggatccctagtaatccagcttgctaaacatgtatttggtgcttctaaagtagcagctacctctagcacagggaagttggaactcctgaaaagcttaggagctgatttagctattgactacactaaggagaattttgaagatctgcctgacaagtttgatgttgtttatgattcagttggtcagggtgaaaaggcggtgaaggtagtgaaggaaggtgggagtgtggtagtgctaacaggggcagtaactccaccaggttttagatttgtggtgacatcaaatggagagatgttgaagaaactgaacccatacttggaaagtgggaaggtgaccccactgatagatccaaagggaccattctcatttgataaggttggggatgctttctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24060" stop="20915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23760" g_stop="23732" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22589" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="353" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22076" g_stop="21917" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="513" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21427" g_stop="21215" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="726" r_length="213" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E712947" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23760" e_stop="23732"/>
          <exon e_start="22912" e_stop="22589"/>
          <exon e_start="22076" e_stop="21917"/>
          <exon e_start="21427" e_stop="21215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTGGTAAGAAATTAGTTTCAACTTTGAAAATTTCCGTTCTTGTAAACGCATTGTCAGGCACGTACAAATTTAACATAACACATAGGTAACTAAATAGTTTAACAGTTAATAATAGTGAACATTCACGAGTATAAAGATTAAAACTGCATATTTTGAATCAATTGATGATCAAAAACTACAATTGCAAAATTTCCTTGATAAATTCTGAACTCATCATTTCATAAGTACAATGTTGGGATCTTTACATAAATAGCCCGCCCAATTCATTATGTACTTTCTCTAGCCGGTCTACATAAATTATGTACTGATTATAAATGGTTATATACAGATTATACATCTGACGGTTATCTTTAGTTTAAGCTGTTGAGAGGGCTGCTATTTAGGTTAATTCTTCTACAATGTTTTCAGCGCTAAGAATCTTCCATCGATTTTAATTAGATTTTGGATCTGCTTCTACTAACAACTATCTCCTCCTCTTGGTACTGACTACAGGTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTT</genome_strand>
        <mrna_strand>AATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGACCCCACTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGGGGATGCTTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703976" ref_strand="+" ref_description="SGN-E703976 [FA23AA09]">
      <seq>cgttttgaagttggagtccaatgttgcagttcctgacattaccgaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccattcttgttttgggaggtgctggcggtgttggatccctagtaatccagcttgctaaacatgtatttggtgcttctaaagtagcagctacctctagcacagggaagttggaactcctgaaaagcttaagagctgatttagctattgactacactaaggagaattttgaagatctgcctgacaagtttgatgttgtttatgattcagttggtcagggtgaaaaggcggtgaaggtagtgaacgaaggtgggagtgtggtaatgctaacaggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24172" stop="21064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23873" g_stop="23732" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22589" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="466" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22076" g_stop="21917" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="626" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21427" g_stop="21364" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="690" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E703976" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23873" e_stop="23732"/>
          <exon e_start="22912" e_stop="22589"/>
          <exon e_start="22076" e_stop="21917"/>
          <exon e_start="21427" e_stop="21364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTGGTAAGAAATTAGTTTCAACTTTGAAAATTTCCGTTCTTGTAAACGCATTGTCAGGCACGTACAAATTTAACATAACACATAGGTAACTAAATAGTTTAACAGTTAATAATAGTGAACATTCACGAGTATAAAGATTAAAACTGCATATTTTGAATCAATTGATGATCAAAAACTACAATTGCAAAATTTCCTTGATAAATTCTGAACTCATCATTTCATAAGTACAATGTTGGGATCTTTACATAAATAGCCCGCCCAATTCATTATGTACTTTCTCTAGCCGGTCTACATAAATTATGTACTGATTATAAATGGTTATATACAGATTATACATCTGACGGTTATCTTTAGTTTAAGCTGTTGAGAGGGCTGCTATTTAGGTTAATTCTTCTACAATGTTTTCAGCGCTAAGAATCTTCCATCGATTTTAATTAGATTTTGGATCTGCTTCTACTAACAACTATCTCCTCCTCTTGGTACTGACTACAGGTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGC</genome_strand>
        <mrna_strand>CGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTACCGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAAGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAACGAAGGTGGGAGTGTGGTAATGCTAACAGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286335" ref_strand="+" ref_description="SGN-E286335 [cLES-11-A4]">
      <seq>ttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccattcttgttttgggaggtgctggcggtgttggatccctagtaatccagcttgctaaacatgtatttggtgcttctaaagtagcagctacctctagcacagggaagttggaactcctgaaaagcttaggagctgatttagctattgactacactaaggagaattttgaagatctgcctgacaagtttgatgttgtttatgattcagctggtcagggtgaaaaggcggtgaangtagtgaaggaaggtgggagtgtggtagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="23088" stop="21074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22788" g_stop="22589" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22076" g_stop="21917" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="360" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21427" g_stop="21374" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="414" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E286335" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22788" e_stop="22589"/>
          <exon e_start="22076" e_stop="21917"/>
          <exon e_start="21427" e_stop="21374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTGGTAAGAAATTAGTTTCAACTTTGAAAATTTCCGTTCTTGTAAACGCATTGTCAGGCACGTACAAATTTAACATAACACATAGGTAACTAAATAGTTTAACAGTTAATAATAGTGAACATTCACGAGTATAAAGATTAAAACTGCATATTTTGAATCAATTGATGATCAAAAACTACAATTGCAAAATTTCCTTGATAAATTCTGAACTCATCATTTCATAAGTACAATGTTGGGATCTTTACATAAATAGCCCGCCCAATTCATTATGTACTTTCTCTAGCCGGTCTACATAAATTATGTACTGATTATAAATGGTTATATACAGATTATACATCTGACGGTTATCTTTAGTTTAAGCTGTTGAGAGGGCTGCTATTTAGGTTAATTCTTCTACAATGTTTTCAGCGCTAAGAATCTTCCATCGATTTTAATTAGATTTTGGATCTGCTTCTACTAACAACTATCTCCTCCTCTTGGTACTGACTACAGGTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGC</genome_strand>
        <mrna_strand>TTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTGAAAAGGCGGTGAANGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340576" ref_strand="+" ref_description="SGN-E340576 [cTOF-1-E23]">
      <seq>ccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccattcttgttttgggaggtgctggcggtgttggatccctagtaatccagcttgctaaacatgtatttggtgcttctaaagtagcagctacctctagcacagggaagttggaactcctgaaaagcttaggagctgatttagctattgactacactaaggagaattttgaagatctgcctgacaagtttgatgttgtttatgattcagttggtcagggtgaaaaggcggtgaaggtagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="23206" stop="21099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22906" g_stop="22589" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22076" g_stop="21917" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="478" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21427" g_stop="21399" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="507" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E340576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22906" e_stop="22589"/>
          <exon e_start="22076" e_stop="21917"/>
          <exon e_start="21427" e_stop="21399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTGGTAAGAAATTAGTTTCAACTTTGAAAATTTCCGTTCTTGTAAACGCATTGTCAGGCACGTACAAATTTAACATAACACATAGGTAACTAAATAGTTTAACAGTTAATAATAGTGAACATTCACGAGTATAAAGATTAAAACTGCATATTTTGAATCAATTGATGATCAAAAACTACAATTGCAAAATTTCCTTGATAAATTCTGAACTCATCATTTCATAAGTACAATGTTGGGATCTTTACATAAATAGCCCGCCCAATTCATTATGTACTTTCTCTAGCCGGTCTACATAAATTATGTACTGATTATAAATGGTTATATACAGATTATACATCTGACGGTTATCTTTAGTTTAAGCTGTTGAGAGGGCTGCTATTTAGGTTAATTCTTCTACAATGTTTTCAGCGCTAAGAATCTTCCATCGATTTTAATTAGATTTTGGATCTGCTTCTACTAACAACTATCTCCTCCTCTTGGTACTGACTACAGGTCAGGGTGAAAAGGCGGTGAAGGTAGTG</genome_strand>
        <mrna_strand>CCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTGAAAAGGCGGTGAAGGTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700286" ref_strand="+" ref_description="SGN-E700286 [FA12CG07]">
      <seq>aaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccattcttgttttgggaggtgctggcggtgttggatccctagtaatccagcttgctanacatgtatttggtgcttctaaagtagcagctacctctagcacagggaaagtggaactcctgaaaagcttaggagctgatttagctattgactacacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24459" stop="21671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24159" g_stop="23732" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22589" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="752" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22076" g_stop="21971" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="858" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E700286" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24159" e_stop="23732"/>
          <exon e_start="22912" e_stop="22589"/>
          <exon e_start="22076" e_stop="21971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTA</genome_strand>
        <mrna_strand>AAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTANACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAAGTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728569" ref_strand="+" ref_description="SGN-E728569 [LA18BA05]">
      <seq>gcttgtaggaaaatactgagtgaggggtaaaaaaaccagctggaacgaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccattcttgttttgggaggtgctggcggtgttggatccctagtaatccagcttgctaaacatgtatttggtgcttctaaagtagcagctacctctagcacagggaaagtggaactcctgaaaagcttaggagctgatttagctattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24505" stop="21678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24205" g_stop="23732" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22589" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="799" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22076" g_stop="21978" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="898" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E728569" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24205" e_stop="23732"/>
          <exon e_start="22912" e_stop="22589"/>
          <exon e_start="22076" e_stop="21978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTG-AGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGAC</genome_strand>
        <mrna_strand>GCTTGTAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAACGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAAGTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728251" ref_strand="+" ref_description="SGN-E728251 [LA17AG08]">
      <seq>gaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccattcttgttttgggaggtgctggcggtgttggatccctaataatccagcttgctaaacatgtatttggtgcttctaaagtagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24453" stop="21740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24153" g_stop="23732" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22589" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="746" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22076" g_stop="22040" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="783" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E728251" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24153" e_stop="23732"/>
          <exon e_start="22912" e_stop="22589"/>
          <exon e_start="22076" e_stop="22040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAG</genome_strand>
        <mrna_strand>GAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAATAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698923" ref_strand="+" ref_description="SGN-E698923 [FA08AB03]">
      <seq>atttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttccctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccattcttgttttgggaggtgctggcggtgttggatccctagtaatccccaccttgctaaccctgtatttggtgcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24358" stop="21749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24058" g_stop="23732" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22589" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="654" r_length="327" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22076" g_stop="22049" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="682" r_length="28" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E698923" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24058" e_stop="23732"/>
          <exon e_start="22912" e_stop="22589"/>
          <exon e_start="22076" e_stop="22049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTT-CCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAAT--CCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTCTA</genome_strand>
        <mrna_strand>ATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAACCCTGTATTTGGTGCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731919" ref_strand="+" ref_description="SGN-E731919 [LA28CC06]">
      <seq>gaaagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccattcttgttttgggaggtgctggcggtgttggatccctagtaatccagcttgctaaacatgtatttggtgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24464" stop="21751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24164" g_stop="23732" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22589" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="757" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22076" g_stop="22051" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="783" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E731919" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24164" e_stop="23732"/>
          <exon e_start="22912" e_stop="22589"/>
          <exon e_start="22076" e_stop="22051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAGGTATGAACATTTCAATAAGTCTCATTTAAAGGTATTCTTTCAGTTTTAGAAAAGCATGATTTCTAGAGAAGTGTTCAGGTCACCTAATGATAACTATGAGTAACCGTCCATAAGAGTGAGATTAGTAACTCAAAAGATAAGGCAGGTTGTCCGCTACAACAGATTAAATATTCTGGTGCTAGCGTCTACAAAGATAACATACGGACATGGCTTTCAGTAGGAATATTTGAGGACAATGTCAAATTAAATCATTTTTTCAGTCTTCATCATTTACTCCCCTGAATTAGCAGTCACGCGTCTTCTTCACCTCGCTCATTACATCATATGGATTCAATATCCATTGGGCGTTTTTAAAGATAAACATAATAGCCTCTTACCCTATTTTTGTGTAAACGATCTCGTAGGCTGGGTAGCTTTAGCTATCTTTTCTGCATGTTCAATCCTTTTATATTTTCATGTGCCCCTGCTGCTAAAAATAGAAGCTGATGTGTCGTGTTTTTTCTGTTATGCAGCTTGCTAAACATGTATTTGGTGCTTC</genome_strand>
        <mrna_strand>GAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTAAACATGTATTTGGTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320349" ref_strand="+" ref_description="SGN-E320349 [cTOB-22-K11]">
      <seq>gaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccattcttgntttgggaggtgctggcggtgttggatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24456" stop="22299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24156" g_stop="23732" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22599" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="739" r_length="314" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E320349" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24156" e_stop="23732"/>
          <exon e_start="22912" e_stop="22599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCT</genome_strand>
        <mrna_strand>GAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGNTTTGGGAGGTGCTGGCGGTGTTGGATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322077" ref_strand="+" ref_description="SGN-E322077 [cTOB-29-D11]">
      <seq>aaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagcttggattttcttctggcaaatccaatcttggtttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24459" stop="22322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24159" g_stop="23732" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22622" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="720" r_length="292" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E322077" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24159" e_stop="23732"/>
          <exon e_start="22912" e_stop="22622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGC-TGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGA</genome_strand>
        <mrna_strand>AAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTTGGATTTTCTTCTGGCAAATCCAATCTTGGTTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697503" ref_strand="+" ref_description="SGN-E697503 [FA03AG03]">
      <seq>cggtatagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttaattttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgaaaaagctggattttcttctggcaaatccattcttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24465" stop="22327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24167" g_stop="23732" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22627" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="722" r_length="286" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E697503" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24167" e_stop="23732"/>
          <exon e_start="22912" e_stop="22627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTT</genome_strand>
        <mrna_strand>CGGTATAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAATTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAAAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539395" ref_strand="+" ref_description="SGN-E539395 [TUS-59-C3]">
      <seq>gaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccattcttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24456" stop="22327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24156" g_stop="23732" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22627" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="711" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E539395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24156" e_stop="23732"/>
          <exon e_start="22912" e_stop="22627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTT</genome_strand>
        <mrna_strand>GAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729999" ref_strand="+" ref_description="SGN-E729999 [LA22DA01]">
      <seq>ccattgaggggtaaaaaaaccagctggaaagaaagaagaacaatgaaaactctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcaatctccattttcttctatttctgttcttaaagtaaagggtagcaaaaaagctgaaacttttattcaaagaatcaatttttccactgttttgccacttatagtctctgctagatctcaagcaacatctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcaattcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgatgattttaaacgacagctcggaaaatttaaagccactgattcaccacttccaactgtgccacgttatgatgttgctggtgtggtagtgaaagttggtactcaggtaaagggattaaaagaaggagatgaagtatatggagatatacataagaaagcattatatggaccagagcaatttggatccttagctgattacactgctgttgaatataaactagttgctttgaaacccaataatcttacttttgcggaggatgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctgagatttcttctggcaaatccattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24488" stop="22331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24190" g_stop="23732" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22631" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="741" r_length="282" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E729999" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24190" e_stop="23732"/>
          <exon e_start="22912" e_stop="22631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTT</genome_strand>
        <mrna_strand>CCATTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGAAAACTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCAATCTCCATTTTCTTCTATTTCTGTTCTTAAAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAATCAATTTTTCCACTGTTTTGCCACTTATAGTCTCTGCTAGATCTCAAGCAACATCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAATTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGATGATTTTAAACGACAGCTCGGAAAATTTAAAGCCACTGATTCACCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCACGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTACTCAGGTAAAGGGATTAAAAGAAGGAGATGAAGTATATGGAGATATACATAAGAAAGCATTATATGGACCAGAGCAATTTGGATCCTTAGCTGATTACACTGCTGTTGAATATAAACTAGTTGCTTTGAAACCCAATAATCTTACTTTTGCGGAGGATGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGAGATTTCTTCTGGCAAATCCATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327794" ref_strand="+" ref_description="SGN-E327794 [cTOC-20-L9]">
      <seq>gaaagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggctgctgctcttcctctagctattgagactgcttatgaaggtcttgagaaagctggattttcttctggcaaatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24464" stop="22335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24164" g_stop="23732" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22635" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="711" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E327794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24164" e_stop="23732"/>
          <exon e_start="22912" e_stop="22635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCAT</genome_strand>
        <mrna_strand>GAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718488" ref_strand="+" ref_description="SGN-E718488 [FC04DC09]">
      <seq>tactgagtgaggggtaaaaaaaccagctggaaagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttgtagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaaacttagttttgcggaggctgctgctcttcctctagctattgagactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24493" stop="22379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24193" g_stop="23732" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22679" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="696" r_length="234" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E718488" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24193" e_stop="23732"/>
          <exon e_start="22912" e_stop="22679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCT</genome_strand>
        <mrna_strand>TACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGTAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAAACTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284261" ref_strand="+" ref_description="SGN-E284261 [cLER-16-F9]">
      <seq>aagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatcttagttttgcggaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24455" stop="22409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24155" g_stop="23732" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22709" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="628" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E284261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24155" e_stop="23732"/>
          <exon e_start="22912" e_stop="22709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCT</genome_strand>
        <mrna_strand>AAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318967" ref_strand="+" ref_description="SGN-E318967 [cTOB-14-J13]">
      <seq>ggaaagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttgaagagaaactagttgctttgaaacccaagaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24465" stop="22424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24165" g_stop="23732" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22724" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="623" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E318967" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24165" e_stop="23732"/>
          <exon e_start="22912" e_stop="22724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTT</genome_strand>
        <mrna_strand>GGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729286" ref_strand="+" ref_description="SGN-E729286 [LA20CD03]">
      <seq>gaaagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatatggatacttagctgagtacactgctgttgaagagaaactagttgctttgaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24464" stop="22434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24164" g_stop="23732" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22734" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="612" r_length="179" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E729286" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24164" e_stop="23732"/>
          <exon e_start="22912" e_stop="22734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACC</genome_strand>
        <mrna_strand>GAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATATGGATACTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302166" ref_strand="+" ref_description="SGN-E302166 [cLEW-19-H12]">
      <seq>tttgaggaaaatactgagtgaggggtaaaaaaaccagctggaaagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacactgctgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24504" stop="22458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24204" g_stop="23732" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22758" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="628" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E302166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24204" e_stop="23732"/>
          <exon e_start="22912" e_stop="22758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGA</genome_strand>
        <mrna_strand>TTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367313" ref_strand="+" ref_description="SGN-E367313 [cLPT-5-L6]">
      <seq>ttctttatcatgcacataaatggtttgaggaaaatactgagtgagaggttaaaaaaacagctggaaagaaagaagaacaatgaaagctctattatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaaattttccactgttttgccacttaaagtctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggttaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggatccttagctgagtacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24527" stop="22466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24227" g_stop="23969" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23968" i_stop="23793" i_length="176">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23792" g_stop="23732" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="320" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22912" g_stop="22766" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="467" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E367313" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24227" e_stop="23969"/>
          <exon e_start="23792" e_stop="23732"/>
          <exon e_start="22912" e_stop="22766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACT</genome_strand>
        <mrna_strand>TTCTTTATCATGCACATAAATGGTTTGAGGAAAATACTGAGTGAGAGGTTAAAAAAACAGCTGGAAAGAAAGAAGAACAATGAAAGCTCTATTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAAATTTTCCACTGTTTTGCCACTTAAAGTCTCT................................................................................................................................................................................TAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTTAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249698" ref_strand="+" ref_description="SGN-E249698 [cLEF-56-D16]">
      <seq>atggaagctctgttatcttccactactcttcaactcaaacggcttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagcattagatggaccaaagcaatttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24448" stop="22483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24148" g_stop="23732" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22783" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="547" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E249698" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24148" e_stop="23732"/>
          <exon e_start="22912" e_stop="22783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGAT</genome_strand>
        <mrna_strand>ATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACGGCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348089" ref_strand="+" ref_description="SGN-E348089 [cTOF-31-B22]">
      <seq>taaattgtttgaggaaatactgagtgaggggtaaaaaaccagctggaaagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacataaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgtngcctgtgttggtagtgaaagtgggtagtcaggtaaagggattaaaaaagggnatgaagtatatggagatatacatgagaaagcattagatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24511" stop="22499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24211" g_stop="23732" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22799" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="591" r_length="114" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E348089" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24211" e_stop="23732"/>
          <exon e_start="22912" e_stop="22799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTG-TGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGA</genome_strand>
        <mrna_strand>TAAATTGTTTGAGG-AAATACTGAGTGAGGGGTAAAAAA-CCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACA-TAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTNGCCTGTGTTGGTAGTGAAAGTGGGTAGTCAGGTAAAGGGATTAAAA-AAGGGNATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329436" ref_strand="+" ref_description="SGN-E329436 [cTOD-11-M11]">
      <seq>aagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24462" stop="22508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24162" g_stop="23732" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="536" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E329436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24162" e_stop="23732"/>
          <exon e_start="22912" e_stop="22808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCA</genome_strand>
        <mrna_strand>AAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257818" ref_strand="+" ref_description="SGN-E257818 [cLEG-39-C8]">
      <seq>aaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaagttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatgagaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24412" stop="22508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24112" g_stop="23732" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="486" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E257818" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24112" e_stop="23732"/>
          <exon e_start="22912" e_stop="22808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCA</genome_strand>
        <mrna_strand>AAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAAGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266401" ref_strand="+" ref_description="SGN-E266401 [cLEI-3-O16]">
      <seq>aacaatggaagctctgttatcttccactactcttcaactcaaaccccgtcatgcaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtnaagggattaaaagaaggggatgaagtatatggagatatacatgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24452" stop="22512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24152" g_stop="23732" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22812" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="522" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E266401" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24152" e_stop="23732"/>
          <exon e_start="22912" e_stop="22812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAA</genome_strand>
        <mrna_strand>AACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCGTCATGCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTNAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313505" ref_strand="+" ref_description="SGN-E313505 [cTOA-12-I13]">
      <seq>aagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggagatatacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24462" stop="22516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24162" g_stop="23732" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22816" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="528" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E313505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24162" e_stop="23732"/>
          <exon e_start="22912" e_stop="22816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATG</genome_strand>
        <mrna_strand>AAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728965" ref_strand="+" ref_description="SGN-E728965 [LA19CB09]">
      <seq>gtttgaggaaatactgagtgaggggtaaaaaaaccagctggaaagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaagaaggggatgaagtatatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24505" stop="22525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24205" g_stop="23732" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22825" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="561" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E728965" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24205" e_stop="23732"/>
          <exon e_start="22912" e_stop="22825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAG</genome_strand>
        <mrna_strand>GTTTGAGG-AAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728954" ref_strand="+" ref_description="SGN-E728954 [LA19CA06]">
      <seq>gtttgaggaaaatactgagtgaggggtaaaaaaaccagctggaaagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaaacaaggggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24505" stop="22537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24205" g_stop="23732" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22837" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="550" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E728954" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24205" e_stop="23732"/>
          <exon e_start="22912" e_stop="22837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATG</genome_strand>
        <mrna_strand>GTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAACAAGGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720255" ref_strand="+" ref_description="SGN-E720255 [FC10BB01]">
      <seq>atcggccgaattgactagagtgaccattccaaaagtataaaattttcttcatattcttagcttgaactagagtttcttaaagtagttctacgtttcaccacaactcatgttagtattttgtgtcttgaatgctctttttagtttgtggctattaatttccttatggcctcatcaaaaacagggaaaattatgaggacaagatattccaaatcactattttactaacaaatggatggctgaaaatgaattctacccaaaaaaaagaaaatagaagccaaaatcaatcatttcatcttatctatcatgcacataaattgtttgaggaaaatactgagtgaggggtaaaaaaaccagctggaaagaaagaaaaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttaaagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcaggtaaagggattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24808" stop="22548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24508" g_stop="23732" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="791" r_length="778" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22848" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="856" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E720255" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24508" e_stop="23732"/>
          <exon e_start="22912" e_stop="22848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGAGTGACCATTTCAAAAGTATAAAATTTTCTTCATATTCTTAGCTTGAACTAGAGTTTCTTAAAGTAGTTCTACGTTTCACCACAACTCATGTTAGTATTTTGTGTCTTGAATGCTCTTTTTAGTTTGTGGCTATTAATTTCCTTATGGCCTCATCAAAAACAGGGAAAATTATGAGGACAAGATATTCCAAATCACTATTTTACTAACAAATGGATGGCTGAAAATGAATTCTACCCAAAAAAAAGAAAATAGAAGCCAAAATCAATCATTTCATCTTATCTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGC-AAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAA</genome_strand>
        <mrna_strand>ACTAGAGTGACCATTCCAAAAGTATAAAATTTTCTTCATATTCTTAGCTTGAACTAGAGTTTCTTAAAGTAGTTCTACGTTTCACCACAACTCATGTTAGTATTTTGTGTCTTGAATGCTCTTTTTAGTTTGTGGCTATTAATTTCCTTATGGCCTCATCAAAAACAGGGAAAATTATGAGGACAAGATATTCCAAATCACTATTTTACTAACAAATGGATGGCTGAAAATGAATTCTACCCAAAAAAAAGAAAATAGAAGCCAAAATCAATCATTTCATCTTATCTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAAAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAAAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725536" ref_strand="+" ref_description="SGN-E725536 [LA03DG12]">
      <seq>aaattgtttgaggaaaatactgagtgaggggtaaaaaaaccagctggaaagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctncacttccaactgtgccaggttatgatgttgctggtgtggtagtgaaagttggtagtcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24510" stop="22561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24210" g_stop="23732" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="531" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E725536" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24210" e_stop="23732"/>
          <exon e_start="22912" e_stop="22861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGG</genome_strand>
        <mrna_strand>AAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTNCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246443" ref_strand="+" ref_description="SGN-E246443 [cLEF-52-M20]">
      <seq>aaaccagctggaaagaaagaagaacaatggaagcgctgatatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtcgcaaaagaagctgaaactttcattcaaagaagcaatttttccactgttttgccacttacagactatgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagatggagtgcaatgttgcagctcctgacattaatgaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattctaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatgttgctggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24474" stop="22584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24174" g_stop="23732" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22884" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="473" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E246443" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24174" e_stop="23732"/>
          <exon e_start="22912" e_stop="22884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAA-AAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGTGT</genome_strand>
        <mrna_strand>AAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCGCTGATATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTCGCAAAAGAAGCTGAAACTTTCATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTACAGACTATGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGATGGAGTGCAATGTTGCAGCTCCTGACATTAATGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTCTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATGTTGCTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313480" ref_strand="+" ref_description="SGN-E313480 [cTOA-13-L21]">
      <seq>aagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcaacagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaacgaagatcaagtcttgattaagattgctgctgctgctcttaaccctgttgattttaaacgacggctcgcaaaatttaaagccactgattctccacttgcaactgtgccaagttatgatgttgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24462" stop="22586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24162" g_stop="23732" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22886" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="458" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E313480" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24162" e_stop="23732"/>
          <exon e_start="22912" e_stop="22886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATGTTGCTGGT</genome_strand>
        <mrna_strand>AAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAACAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAACGAAGATCAAGTCTTGATTAAGATTGCTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGCAAAATTTAAAGCCACTGATTCTCCACTTGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAAGTTATGATGTTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366048" ref_strand="+" ref_description="SGN-E366048 [cLPT-15-K14]">
      <seq>aaaaaacagctggaaagaaagaagaacaatgaaagctctattatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaaattttccactgttttgccacttaaagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaaggttgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24477" stop="22594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24176" g_stop="23732" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22894" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="464" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E366048" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24176" e_stop="23732"/>
          <exon e_start="22912" e_stop="22894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGATG</genome_strand>
        <mrna_strand>AAAAAACAGCTGGAAAGAAAGAAGAACAATGAAAGCTCTATTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAAATTTTCCACTGTTTTGCCACTTAAAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGGTTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324225" ref_strand="+" ref_description="SGN-E324225 [cTOC-4-G3]">
      <seq>ggctctggtatcttccacgactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtaccaccaaagctgcaacttttattcaaagaagcacttattgcactgttccgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattntaaacgacggctcggaaaatttaaggccactgattctccacttccaactgtgccaggttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24442" stop="22595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24143" g_stop="23732" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22912" g_stop="22895" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="430" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E324225" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24143" e_stop="23732"/>
          <exon e_start="22912" e_stop="22895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCAGTAAGTTTAGGCACCCTTTTCTTGTTATCTTTGAGTTAGGCTTGAATTCCATTTTTGAATTGTAAATTTGCATTTCTTATCACTTGTGTTATAGTGTTAGTGCAGCTTTTCTCCTTGGATTTCAGCACAGAGGACGTTCAACTATTTTTCGTGTTTATTTCAGTTAATGACTACAGTGGTCACTACTAGTGTTTAGATTTCTGTGACCCTCATCGATGGCCAATATTAAATTAGAGACTATCTGTACTATCTTGTGTTTATGTGTGACGTTTCTTCTAAAAGTTTATGTTGTTAGAGGGAACACACATTCATTTACTTAATTCTTTATTGGAACATGCCCCTCGTGTGGGGGTTCGATTCATTTCATGAGTCAAGCACGTGGATATTATTTATGATAATGGGTGGCAATGAGAACCGAACTCAGGACTTGTGCTTGTTGTGATACCATGTTGAAGTGTATGACATCTAATCTAAAAGCTTAAGTTGTTAGAAACAACATATAGTTATTTACTTAATTATATGTATCTCAACATTCTGCAATTGTTGAAGATGTAAATGGTTGAATAAAATTATGATTTTTCTAACATTTTGAGTTTTTAGATGAGATAACCACACAATTTTAACATGTTGACATAGAATTTCCATGTGTGTTTGGACCATGGAAAAGAATCAGCCTCACAAGTTTGGGGCCTCGTTGAAGTTATAATTAAGTAAATAAAAGTGTACCTTCTGTGACAATACAAGTTAACAGGAAATAGGAGAAAATCACATAATATTTCTGTATATGTGGACTAAAACATATATTTTCTTTCTGTGTAGACTGTGCCAGGTTATGAT</genome_strand>
        <mrna_strand>GGCTCTGGTATCTTCCACGACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTACCACCAAAGCTGCAACTTTTATTCAAAGAAGCACTTATTGCACTGTTCCGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTNTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCCAGGTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725944" ref_strand="+" ref_description="SGN-E725944 [LA08DC06]">
      <seq>gaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgttttgaagttggagtccaatgttgcagttcctgacattaaggaagatcaagtcttgattaagattgttgctgctgctcttaaccctgttgattttaaacgacggctcggaaaatttaaggccactgattctccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24460" stop="23436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24160" g_stop="23736" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E725944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24160" e_stop="23736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACT</genome_strand>
        <mrna_strand>GAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313509" ref_strand="+" ref_description="SGN-E313509 [cTOA-12-K17]">
      <seq>aagaaagaataacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttacagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgatatgccacttacagtctctgctatttctcaagcagcagctgctgaaacatccacaagcattcttattccttctgaaatgaaagctcggagttatactgattatggaagtgttgatgttttgaagcaggagtccaatgttgcagttcctgacattaacgaagatcaagtcttgattaagatagtcgctgctgctcttaaccctgttgatgttaaacgacggctcggaaaatataaagccactgattctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24462" stop="23438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24162" g_stop="23738" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E313509" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24162" e_stop="23738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCA</genome_strand>
        <mrna_strand>AAGAAAGAATAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTACAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGATATGCCACTTACAGTCTCTGCTATTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTCTTATTCCTTCTGAAATGAAAGCTCGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGCAGGAGTCCAATGTTGCAGTTCCTGACATTAACGAAGATCAAGTCTTGATTAAGATAGTCGCTGCTGCTCTTAACCCTGTTGATGTTAAACGACGGCTCGGAAAATATAAAGCCACTGATTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279113" ref_strand="+" ref_description="SGN-E279113 [cLEL-4-O20](-)">
      <seq>gaatcagtggccttaaattttccgagccgtcgtttaaaatcaacagggttaagagcagcagcaacaatcttaatcaagacttgatcttccttaatgtcaggaactgcaaacattggactccaaacttccnnaacatcnnacacttcccatatcagtataactccaagctttcatttcagaaggaatagaaatgcttgtggatgtttcagcagctgctgcttgagaactagcagagactctaagtggcaaaacagtggaaaaattgcttctttgaataaaagtttcagcttttttgctaccctttactctaagaacagaaatagaagaaaatggagagtgaagagaagagaaagaagagggtggatgaaggggtttgagttgaagagtagtggaagataacagagcttccattgttcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="23442" stop="24460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23742" g_stop="24160" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E279113" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23742" e_stop="24160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAGTGGCCTTAAATTTTCCGAGCCGTCGTTTAAAATCAACAGGGTTAAGAGCAGCAGCAACAATCTTAATCAAGACTTGATCTTCCTTAATGTCAGGAACTGC-AACATTGGACTCC-AACTT-CAAAACATC-AACACTTCCATAATCAGTATAACTCCAAGCTTTCATTTCAGAAGGAATAGAAATGCTTGTGGATGTTTCAGCAGCTGCTGCTTGAGAACTAGCAGAGACTCTAAGTGGCAAAACAGTGGAAAAATTGCTTCTTTGAATAAAAGTTTCAGCTTTTTTGCTACCCTTTACTCTAAGAACAGAAATAGAAGAAAATGGAGAGTGAAGAGAAGAGAAAGAAGAGGGTGGATGAAGGGGTTTGAGTTGAAGAGTAGTGGAAGATAACAGAGCTTCCATTGTTCTTCTTTC</genome_strand>
        <mrna_strand>GAATCAGTGGCCTTAAATTTTCCGAGCCGTCGTTTAAAATCAACAGGGTTAAGAGCAGCAGCAACAATCTTAATCAAGACTTGATCTTCCTTAATGTCAGGAACTGCAAACATTGGACTCCAAACTTCCNNAACATCNNACACTTCCCATATCAGTATAACTCCAAGCTTTCATTTCAGAAGGAATAGAAATGCTTGTGGATGTTTCAGCAGCTGCTGCTTGAGAACTAGCAGAGACTCTAAGTGGCAAAACAGTGGAAAAATTGCTTCTTTGAATAAAAGTTTCAGCTTTTTTGCTACCCTTTACTCTAAGAACAGAAATAGAAGAAAATGGAGAGTGAAGAGAAGAGAAAGAAGAGGGTGGATGAAGGGGTTTGAGTTGAAGAGTAGTGGAAGATAACAGAGCTTCCATTGTTCCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279061" ref_strand="+" ref_description="SGN-E279061 [cLEL-4-O17](-)">
      <seq>gagcagcagcaacaatcttaatcaagacttgatcttccttaatgtcaggaactgcaacattggactccaacttcaaaacatcaacacttccataatcagtataactccaagctttcatttcagaaggaatagaaatgcttgtggatgtttcagcagctgctgcttgagaactagcagagactctaagtggcaaaacagtggaaaaattgcttctttgaataaaagtttcagcttttttgctaccctttactctaagaacagaaatagaagaaaatggagagtgaagagaagagaaagaagagggtggatgaaggggtttgagttgaagagtagtggaagataacagagcttccattgttcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="23494" stop="24460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23794" g_stop="24160" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E279061" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23794" e_stop="24160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGCAGCAACAATCTTAATCAAGACTTGATCTTCCTTAATGTCAGGAACTGCAACATTGGACTCCAACTTCAAAACATCAACACTTCCATAATCAGTATAACTCCAAGCTTTCATTTCAGAAGGAATAGAAATGCTTGTGGATGTTTCAGCAGCTGCTGCTTGAGAACTAGCAGAGACTCTAAGTGGCAAAACAGTGGAAAAATTGCTTCTTTGAATAAAAGTTTCAGCTTTTTTGCTACCCTTTACTCTAAGAACAGAAATAGAAGAAAATGGAGAGTGAAGAGAAGAGAAAGAAGAGGGTGGATGAAGGGGTTTGAGTTGAAGAGTAGTGGAAGATAACAGAGCTTCCATTGTTCTTCTTTC</genome_strand>
        <mrna_strand>GAGCAGCAGCAACAATCTTAATCAAGACTTGATCTTCCTTAATGTCAGGAACTGCAACATTGGACTCCAACTTCAAAACATCAACACTTCCATAATCAGTATAACTCCAAGCTTTCATTTCAGAAGGAATAGAAATGCTTGTGGATGTTTCAGCAGCTGCTGCTTGAGAACTAGCAGAGACTCTAAGTGGCAAAACAGTGGAAAAATTGCTTCTTTGAATAAAAGTTTCAGCTTTTTTGCTACCCTTTACTCTAAGAACAGAAATAGAAGAAAATGGAGAGTGAAGAGAAGAGAAAGAAGAGGGTGGATGAAGGGGTTTGAGTTGAAGAGTAGTGGAAGATAACAGAGCTTCCATTGTTCCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283958" ref_strand="+" ref_description="SGN-E283958 [cLER-13-L21]">
      <seq>aaaatactgagtgaggggttaaaaaaccagctggaaagaaagaagaacaatggaagctctgttatcttccactactcttcaactcaaaccccttcatccaccctcttctttctcttctcttcactctccattttcttctatttctgttcttagagtaaagggtagcaaaaaagctgaaacttttattcaaagaagcaatttttccactgttttgccacttagagtctctgctagttctcaagcagcagctgctgaaacatccacaagcatttctattccttctgaaatgaaagcttggagttatactgattatggaagtgttgatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24497" stop="23570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24197" g_stop="23870" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E283958" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24197" e_stop="23870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTT</genome_strand>
        <mrna_strand>AAAATACTGAGTGAGGGGTTAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745459" ref_strand="+" ref_description="SGN-E745459 [GI|47105619]">
      <seq>gactacaaaactttgttattaacatcaaaaaaaaaaaacacaaagagacaatggcaggggaaaattgtcatgatgtgatcaatctacttggttcttcagatcgtgactttcttattcgcaacaatggtgacaaggttaagcttgatactttaaaggagaaaaaaattggtttctacttttcagcatcatggtgtggtccgtgcaaacatttcaccccaaatttggtagaggcgtacaatgctctcctaccaaaaggagactttgaagttgttttccttactgctgatatggatgatgaatcttttaaggagtacttttctaaaatgccttggctcgctgtcccattctctgattctgaaacacgtaaacgtttgaatgaattgtttgctgttaggggaataccccacttagtgatccttgatgctagtgggaaggtagtgacaaatagcggggttgaaatcattgttgagcatggggtggagggctacccattcactcaagaacggctaaacgaacttaaagagcaagaagaaaccgctaaaagagaacagtctttgaaatctatcttggagtcacagtcaagaaactacgtaattgcggctgatggaaggaaggtacctgttgctgagcttgaaggcaagattataggcctatatatgtcaatggcttcttttgaagaatgtgaatcctttactgggaagctgatcgagatgtatgacaagttgaagtctcagggagaaaactttgagattgtcatgattcctcttgacgatgaagatgatgatgaatcttttaagaaagagttttcgagaatgccttggttttcacttcccttagaagacaagacctgcaagaagctggccaggtactttgagctctctacccttcctaccctagtcatcattggaacagatgggaagactcttcattctaatgttgctgaagccgtcgaggagcatggtatcctggcatatccttttagccacgagaagtttgctgaacttgagcagatacagaaagctaaactggaagcacaaacgttggagtcgattttggttactagagatcgtgatttcgtcattggaaaagatggtgaaaagatcctcgtgtctgacctcgtagggaagactattctcctttacttctcagcacattggtgtcctccatgccgtgcttttacaccacagcttaaagaggcatatgagacgataaaatccaaaaatggtccattggaagtgatattcttatctagcgaccaagatcaagcctcatttgatgagtattttgctacaatgccatggctggctcttccgtttggtgatgagaggaagacatatttgagtcgcctattcaaagttcgtggcataccaacattggttgctgtagggccatcaggcaagactgttacaactgacgccagaagtttgatcatgtgtcatggtgctaaggcttttccattcaccgaggagcgtatggaggagattgaagcagaaactgcagagatggcaaaggggtggcctgagaaaattatgcacaaacttcacgagcatgaacttctgctttctaagcgttctgcttacaattgtgatgtatgcgaggagctgggacagatatggtcattctattgtgaagaatgtgactttgatatgcacccaaaatgtgctctagaagaggaaaaggaaagcaacatggacatcgaggaagatcaaaaggatcatatgcacccaaattatgctctagaagaggaaaaggaaagcaacatggatatcgaggaagatcaaaaggatcaaggcaaagaggaacagaaaacaaatgagggatggatttgtgatggtgaagtttgtttcaaaggttaatttgtcattatgtcttgttgactatgaggcatttgctgagcagcatatttgtgggttttgaaattgttctttgtgagacacttctatcctaaaatcttgtcacttctatgcaatactagttttattaaacgttggacctgtatttgatcctgatggtactgtctatctccatgtttatcgtctctatgagtcaagctatttgtgaaagataatgatattgatttgacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38317" stop="28913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38018" g_stop="37886" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37885" i_stop="31428" i_length="6458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31427" g_stop="30948" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="614" r_length="480" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30947" i_stop="30848" i_length="100">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30847" g_stop="30362" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="1100" r_length="486" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30361" i_stop="30199" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30198" g_stop="29219" g_length="980"/>
          <reference_exon_boundary r_type="cDNA" r_start="1101" r_stop="2080" r_length="980" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2082" polyA_stop="2100"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E745459" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2079</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38018" e_stop="37886"/>
          <exon e_start="31427" e_stop="30948"/>
          <exon e_start="30847" e_stop="30362"/>
          <exon e_start="30198" e_stop="29219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTACAAAACTTTGTTATTAACATC-AAAAAAAAAAACACAAAGAGACAATGGCAGGGGAAAATTGTCATGATGTGATCAATCTACTTGGTTCTTCAGATCGTGACTTTCTTATTCGCAACAATGGTGACAAGGTATCAATTGTTACATAAATTCTTTGTTTCTCTTATAGTGAAGTAATTTGTAGTACCTGATGTTGATAAATGATAATTTGGAGAATTTCGATGTAGTTTCTTGTTATTCTTTTGGTTTATGTATTCGTATATTGGGGGCGGAGCTAGGTAGAGCACACGATTTAGCACGGAAAATTATACTGTTTAAATATTTTTTTAATTATATATGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACGCGAAAAACAAGATAACAGATTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGAGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTCCCATAGCGTCTATATATAGTGCTAAGCTACGCCCTAACAGGCTTGGGCCCAACATACAGAATCAACAGAAAACTAAGGGCCCAATACAACAACATTGTATACCGTCGGGCCGGGGGCGTCTCCGCCCCCCCGGACCCCCAGGCCAGGGGGCGCGTCGCCCCCCTGGACCCCCCGACTCGCTGACCGGGCAACAAGACCCCCGTCCTTTCTGTTTGTAGCGGGTCCGATTCAAGGCATTCAACAAATCTCCACTTTGACTTGAATTCTCCGAACAGATTCTTCAGACGCACTATGATAGTGCCAGGCCTCCCCCTCTTCCTCAGAGTTGCCCCGCAGGGCAATTAACAGCTTCTGATGTTGAGCAAGTCCAAACAGTGTTGAAACTTGCTCTGTGGAACCGGCTTTGTGAACATATCAGCAGGATTATCAGCAGTTCCTACTTTCTTCACCTTGATTCTCTTCTCACTTCTCAGAAAATGATACCTTACGTCAATATGCTTGGTTCTCTCATGATGGACTTGATCCTTGGCTAGACAAATTGCGCTCAAACTGTCACAATACACCGTAGCCTGATCATGATGCAGACCAAGATCACTAACCAGCCCTTTCAACCAAATCCCTTCTTTTGCAGCCTCTGTCAAGGCCATGTACTCCGCTTCCGTAGTAGACAAAGTCACTGTAGGTTGCAAAGTTGCCTTCCAACTGACGACAGATCCTCCAAGGGTAAACACATAGCCAGTCATCGATCTTCTTATGTCAACATCTCCAGCATAGTCTGAATCAGAATAGCCAGTAACCAAGCACTGAGTATCACCTCCATAAATGAGACCAACGTCAGATGTACCTCTAAGGTACCGGAAAATTCTCTTCACAGCCTGCCAATGTTCTCTCCCTGGTTGTCCCATGAATCTGCTCACTACACTGACTGCATGTGCTAAATCTGGCCTTGTAAAGACCATAGCATACATCAAACTTCCTACGGCACTGGCATAAGGGACTCGTGACATATACTCCTTCTCTTCTTCTGACTGTGGAGCAAACATGGCAGTGAGATGGATATTGGCAGCACTGGGGGTATCAATGGGCTTAGATGAAGACATGCCAAACCTCGCTAAGACCTTCTGAATGTAGCTTCTCTGTGACAAGAAAAGTTTCCTTCTCTCTCTGTCTCTAATGATCTCCATCCCTAAAATCTTCCGAGCGGCTCCCAGATCCTTCATCTCAAACTCAGCACTAAGTAAACCCTTCAGCTTCTGAATGTCATACTTCTTCTTTGCAGCTATCAACATATCATCTACATAAAGCACCAGATAGATGAATGAATCATCATTGAGCCTATTGTAGTAGACACAACAGTCATATGAGCTCCGAGTATAGCCTAACTTCACCATATAGCTGTCAAACCTTTTATACCACTGCCTTGGAGACTGCTTAAGTCCATATAAGGACTTCTTCAACTTGCAGACGTGATTTTCCTTCCCTGGAACTTGGAAACCATCCGGCTGAGTCATGTATATCTCTTCCTCCAACTCTCCATGTAGAAACGCTGTCTTCACATCAAGTTGTTCAAGCTCCAGATTCTGATGTGCAACTATCGCTAGTAACACTCGGATGGAAGTATGTCTGACCACTGGTGAGAAGATCTCATTGTAGTCCACTCCCTCTCTTTGGTTGAAACCTCTGGCAACAACCCTGGCTTTATACTTGACTCCTTCTGCTGGTGATATCCCTTCCTTCTTCTTGAAAACCCATTTGCAAGTAATAATCTTTCTCCTCGAAGGCTGTATGACCAGATCCCATGTTTGATTCTTGTGTAGGGACTCCATCTCATCTCCCATAGCGGCAAACCATTTTTCAGAATCAGAACTTAAAATGGCTTCTTTGTAAGTAGACGGCTCAGATGTATCTACCTCTTCAGCAACCTGCAGTGCATAACCCACCATGTCCTCAAAACCATACCTCGTAGGTGGCCGAACTCCAACCCTCCTTGGCCGATCTTGAGCTATACTCTGATGGATATCTGATGGCATAGATTCTGGAATATCAGTTTCTGTCTGTGGCTCTTGATCCTCCTCTTCAGGTTCCTTTAAATCGCTCTCGTTCTGAATGACTTGAAACTCCACCTGTTTGTCAAGACTCCCAGTTTCTGACGTAGTTGTAGGCTTCACAATGGTTCTAAGCAGAGAACTTTCATCAAAGACAACGTTCCTGCTCACAATAACCCTCTTTTCTGCTGGAGACCAGATTCTGAAACCTTTCACTCCATCTCCGTAGCCCACAAATACTCCCTTTTTAGCTCTTGGTTCTAACTTACCTTCACTAACGTGATAGTAAGCCGTACAACCAAAAGCTTTCAGATTTGAATAATCAGCAGCTTTTCCTGACCACATCTCCATAGGTGTCTTGCACTGTATGCCTGTATGTGGTCCGCGGTTAATCAAGTAGCAAGCTGTACTAACCGCTTCTGCCCAGAATCTTCTATCTAGCCCAGCATTAGAGAGCATGCACCTTGCTCTCTCTAGAAGTGTTTGATTCATCCGCTCAGCTACACCGTTCTGCTGTGGTGTATTTCTGACTGTACGATGTCGAGCAATCCCTTCATCCTTACAGAATTGATCAAATTCAGACCAACAGAATTCCAGCCCATTATCAGTTCGCAACCTCTTGATCTTCTTCCCTGTTTGATTTTCCATCAAAATTTTCCACTCCTTGAACTTCTGGAAGGCTTCACTTTTATGCTTCATCATGTACACCCAAGTCATCCTTGAGTAGTCATCAATAATGGACACAAAAAATCTGCAGCCTCCCAAAGACTCAACACGGCATGGACCCCAGCAATCAGAATGGATATAATCAAGTGTGCCTTTTGTTCTATGAATGGCCTTTGGAAACTTGTTGCGATGTAGTTTTCCAAAAACACAATGTTCACAAAACTCTAGGCTCTTAACCTTATGACCAGCAAGTAAATCCTCCTTTGACAGAATTTGCATCCCTCTTTCACCCATATGACCAAGTCTCATGTGCCATAACTTAGTCATATCCTTCTGGTGAAATTCTGACGATGCAACATGGGCTGAACCTGTAACCGTGGAACCTTGTAGAAAATACAAAGTACCACGCATGACACCTTTCAGAATCAAATTTGAACCCTTCCAGACCCGCAAGACTCCATCTTTTCCCGACCAGCTGAATCCCTTGCTGTCCAAAAGACTGAGAGATATCAGATTTTTCGTCATCAATGGAACGTGCCTGACCTCGTTCAATGTGCAGAAGCTACCGTCATGTGTCCTTATCTTGATCGAGCCTGTCCCAACCACCTTGCAGACAGAACTGTTGGCCATCGAGATGCTGCCTCCGTCTACCTACTCATAAGTCGTGAACCACTCTCTCCTAGGACAGATGTGATAGGATGCCCCAGAATCGAGAACCCACACATCTGAATGATGAGTGTGCTCATCCGCGACTAGGGCAATATCTTCTTCAGAATTGGTGTCTTCTTCAGCAACAGCAGCAGACACTGATTGTTTTTCCGATTGCTTCTTCTTCTTCGGACAATCAAATTTCCAATGTCCCTTCTCCTTGCAGTAATTACAAACATCATCCGGCTTTGCACCCTTCGACATCGGCTTATTTTTCTTTCCGCCGTTTTTCCTTCCCTTTCCGCTACTGGTGAGCAGACCGGAAGGCTGTATGTCCGTACTTGTGCCGTTAGCCTTATGCCGTAATTCCCTGCTATGAAGGGCCGATCTGACTTCTTCCAGTGACACAGTATCTTTCCCAACAATGAACGATTGAACAAAATTCTCAAACGACATTGGGAGAGATACTAACAGAATCAGGGCAGCATCTTCATCCTCGATCTTCACATCGATATTACGCAATTCTAATAACAAAGTATTCAATTGCTCTAAGTGTTCCCTGAGTTGTGTACCTTCAGCCATTCGTAAACCGAATAGACGTTGTTTCAGAAGCAGCTTGTTGGTTAGAGATTTTGTCATGTACAAACTCTCCAGCTTCAACCACAGACCAGCAGCAGTCTCTTCATCCGAGACCTCCGTGATGACGTCATCCGCGAGACACAGCATGATCGTCGAGTGCGCCTTTTCCTCCAGAATCGCCATCTCAGGAGTAACGACGGCGTTCTTGTCTTTCGACAACGGCGCCCAGAAGCCTTGCTGTTTCAACAAGGCCCGCATCTTGATCTGCCATAAACTGAAACTGTTCCTCCCTGTGAATTTGTCGATTTTCACGTTCAAAGCAGACATCTCGAATTCTCCAAGAACACCGATTAACCGAGAGGCTCTGATACCAATTTGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACGCGAAAAACAAGACAACAGATTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGGGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTCCCATAGCGTCTATATATAGTGCTAAGCTACGCCCTAACAGGCTTGGGCCCAACATACAGAATCAACAGAAAATTAAGGGCCCAATACAACAACATTGTATACCGTCGGGCCGGGGGCGTCTCCACCCCCCGGACCCCCAGGCCAGGGGGCGCGTCGCCCCCCTAGACCCCCCGACTCGCTGACCGGGCAGCAAGACCCCCGTCCTTTCTGTTTGTAGCGGGTCCGATTCAAGGCATTCAACAATATAAATAGCGGATGTTAAACTCTGCTTTTAACTTCTTATATTTATTTCTTCATAATTTGATTATTTAGTGAAATTTTAGGCTCGATTGTCGTGTGTTATGTAGATACTGAAAATCGATTTTCTCAAAAAGTAAAAATGATATGACTTGTGACAAAACAAAAGTAGAAATGATATGATTTATGACAGGAGAGGATCTAAGAAGCAAAAAGAGATGTCGGTATAATATGGAGTTTCTAATTCTCCCTTAAGGGGATGAAAAGATGTTTTGAAGTTTCAAAATAACTAATTCGGCTTTGTACGGTGTTGGTGATCTCACTTAATGAGCAAGCACTCACTAGTCACTATCTTAGTTTCTTCGATTCTCAGAGACCTCTGATTAAGGGTAGAGGGTGTGCTCGCATCTATTCCACCTAGTAAGACTTGTGGACTTCTTAAAGTTATCTAAGAAATGTTCTTATAAGATTGATCTAGGCCTTGGACAGTTTTTTGAGAACAGCCTCAAAAAGTTGTGAAAATTTGAAGGATGATCATTTTTTTTTACCGTGGTATCGGGGCTAATTTTTAATTCCATGGAATATCTGACACCTTCCACCAGCAACATGTACCAGATCACTCTATCCACCAAGGCTAAAACGGGTGGGAAGGATGATTACTTTTTAATACAAAGTTCTTCAAACTCAATTGTGTTTGTACTGGTTTGTTATTCAGAAAGGCATGATTATGATTTATAACCCGTTACTTTGCAAATCTATCTGCATTATTTACTCCACCTATGCTTTGGAAATGCTTACAACAATATCCATAAGTTTGTAACATTTAAAAGAGTAATTTTACTGTTTTAATGAAACAAGATGAAATGACTTATAGAGGGAACATAAGAACATGATAATAGGGACACATTAAATATGTAACAATTAAAAGAAAATGTAACATATATGCAATATTCAAGATTTAGCGAGAAATTGTGGAAGTAAGTTTGGTTGATCTTGGTTTCTTAATTTTTAAGTGGTTCAGAATTGGCTTGATTCGAAACCAAAAACATTATTTTGTTGTGCTTTTATTCTTTTATGGATGTTTCATTCTGTTTTGATTGAAAAAACCAAATAATTACTTGCTTGTTTCGAACAAAGTTGTAGGACCAGGCGGTCTGAAAATAGCTTTGCCTATCATTTCAAATATCATAATATGTTTGTAGTTATAAGGTATTTGAACATAAGAAAGTGAGGTGTATATGCATTGTTTTCCGTGTGCCTGACTTTTTAGTTTTACTGGTATAGACAGATATGTTAGGAAAGGAACAAGATGAATTTTGGAAATTATAGCTAGCTCTGATTAACAGATAATTTCATTTGTGGCATGTTTTTCACAAACGTTTAATTCTCAGGTTAAGCTTGATACTTTAAAGGAGAAAAAAATTGGTTTCTACTTTTCAGCATCATGGTGTGGTCCGTGCAAACATTTCACCCCAAATTTGGTAGAGGCGTACAATGCTCTCCTACCAAAAGGAGACTTTGAAGTTGTTTTCCTTACTGCTGATATGGATGATGAATCTTTTAAGGAGTACTTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGTTAGGGGAATACCCCACTTAGTGATCCTTGATGCTAGTGGGAAGGTAGTGACAAATAGCGGGGTTGAAATCATTGTTGAGCATGGGGTGGAGGGCTACCCATTCACTCAAGAACGGCTAAACGAACTTAAAGAGCAAGAAGAAACCGCTAAAAGAGAACAGTCTTTGAAATCTATCTTGGAGTCACAGTCAAGAAACTACGTAATTGCGGCTGATGGAAGGAAGGTTGATTCAAGATGCTGCTCTTCTCTCCTTCATTTCATACTCTTGTTTATTAATAAAAGTTTCCCTCATTACTTTTTTGCTGTGTCTTGATAATTATCAGGTACCTGTTGCTGAGCTTGAAGGCAAGATTATAGGCCTATATATGTCAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTAAGAAAGAGTTTTCGAGAATGCCTTGGTTTTCACTTCCCTTAAAAGACAAGACCTGCAAGAAGCTGGCCAGGTACTTTGAGCTCTCTACCCTTCCTACCCTAGTCATCATTGGAACAGATGGGAAGACTCTTCATTCTAATGTTGCTGAAGCCGTCGAGGAGCATGGTATCCTGGCATATCCTTTTAGCCACGAGAAGTTTGCTGAACTTGAGCAGATACAGAAAGCTAAACTGGAAGCACAAACGTTGGAGTCGATTTTGGTTACTAGAGATCGTGATTTCGTCATTGGAAAAGATGGTGAAAAGGTAGGGACACAAACATCACATTTTTGGTTATATTTTGTTTTCGTTCAATCTTTCGTCATCAATCATGCTTTGATTACTATACTATGATTAACATGACTGACCTTTCTGTTGATATTTACTCTTATCCCTAACTTCAACTAGTAACCAAAATTTCTCTTTGTAGATCCTCGTGTCTGACCTCGTAGGGAAGACTATTCTCCTTTACTTCTCAGCACATTGGTGTCCTCCATGCCGTGCTTTTACACCACAGCTTAAAGAGGCATATGAGACGATAAAATCCAAAAATGGTCCATTGGAAGTGATATTCTTATCTAGCGACCAAGATCAAGCCTCATTTGATGAGTATTTTGCTACAATGCCATGGCTGGCTCTTCCGTTTGGTGATGAGAGGAAGACATATTTGAGTCGCCTATTCAAAGTTCGTGGCATACCAACATTGGTTGCTGTAGGGCCATCAGGCAAGACTGTTACAACTGACGCCAGAAGTTTGATCATGTGTCATGGTGCTAAGGCTTTTCCATTCACCGAGGAGCGTATGGAGGAGATTGAAGCAGAAACTGCAGAAATGGCAAAGGGGTGGCCTGAGAAAATTATGCACAAACTTCACGAGCATGAACTTCTGCTTTCTAAGCGTTCTGCTTACAATTGTGATGTATGCGAGGAGCTGGGACAGATATGGTCATTCTATTGTGAAGAATGTGACTTTGATATGCACCCAAAATGTGCTCTAGAAGAGGAAAAGGAAAGCAACATGGATATCGAGGAAGATCAAAAGGATCATATGCACCCAAATTATGCTCTAGAAGAGGAAAAGGAAAGCAACATGGATATCGAGGAAGATCAAAAGGATCAAGGCAAAGAGGAACAGAAAACAAATGAGGGATGGATTTGTGATGGTGAAGTTTGTTTCAAAGGTTAATTTGTCATTATGTCTTGTTGACTATGAGGCATTTGCTGAGCAGCATATTTGTGGGTTTTGAAATTGTTCTTTGTGAGACACTTCTATCCTAAAATCTTGTCACTTCTATGCAATACTAGTTTTATTAAACGTTGGACCTGTATTTGATCCTGATGGTACTGTCTATCTCCATGTTTATCGTCTCTATGAGTCAAGCTATTTGTGAAAGATAATGATATTGATTT</genome_strand>
        <mrna_strand>GACTACAAAACTTTGTTATTAACATCAAAAAAAAAAAACACAAAGAGACAATGGCAGGGGAAAATTGTCATGATGTGATCAATCTACTTGGTTCTTCAGATCGTGACTTTCTTATTCGCAACAATGGTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGCTTGATACTTTAAAGGAGAAAAAAATTGGTTTCTACTTTTCAGCATCATGGTGTGGTCCGTGCAAACATTTCACCCCAAATTTGGTAGAGGCGTACAATGCTCTCCTACCAAAAGGAGACTTTGAAGTTGTTTTCCTTACTGCTGATATGGATGATGAATCTTTTAAGGAGTACTTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGTTAGGGGAATACCCCACTTAGTGATCCTTGATGCTAGTGGGAAGGTAGTGACAAATAGCGGGGTTGAAATCATTGTTGAGCATGGGGTGGAGGGCTACCCATTCACTCAAGAACGGCTAAACGAACTTAAAGAGCAAGAAGAAACCGCTAAAAGAGAACAGTCTTTGAAATCTATCTTGGAGTCACAGTCAAGAAACTACGTAATTGCGGCTGATGGAAGGAAG....................................................................................................GTACCTGTTGCTGAGCTTGAAGGCAAGATTATAGGCCTATATATGTCAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTAAGAAAGAGTTTTCGAGAATGCCTTGGTTTTCACTTCCCTTAGAAGACAAGACCTGCAAGAAGCTGGCCAGGTACTTTGAGCTCTCTACCCTTCCTACCCTAGTCATCATTGGAACAGATGGGAAGACTCTTCATTCTAATGTTGCTGAAGCCGTCGAGGAGCATGGTATCCTGGCATATCCTTTTAGCCACGAGAAGTTTGCTGAACTTGAGCAGATACAGAAAGCTAAACTGGAAGCACAAACGTTGGAGTCGATTTTGGTTACTAGAGATCGTGATTTCGTCATTGGAAAAGATGGTGAAAAG...................................................................................................................................................................ATCCTCGTGTCTGACCTCGTAGGGAAGACTATTCTCCTTTACTTCTCAGCACATTGGTGTCCTCCATGCCGTGCTTTTACACCACAGCTTAAAGAGGCATATGAGACGATAAAATCCAAAAATGGTCCATTGGAAGTGATATTCTTATCTAGCGACCAAGATCAAGCCTCATTTGATGAGTATTTTGCTACAATGCCATGGCTGGCTCTTCCGTTTGGTGATGAGAGGAAGACATATTTGAGTCGCCTATTCAAAGTTCGTGGCATACCAACATTGGTTGCTGTAGGGCCATCAGGCAAGACTGTTACAACTGACGCCAGAAGTTTGATCATGTGTCATGGTGCTAAGGCTTTTCCATTCACCGAGGAGCGTATGGAGGAGATTGAAGCAGAAACTGCAGAGATGGCAAAGGGGTGGCCTGAGAAAATTATGCACAAACTTCACGAGCATGAACTTCTGCTTTCTAAGCGTTCTGCTTACAATTGTGATGTATGCGAGGAGCTGGGACAGATATGGTCATTCTATTGTGAAGAATGTGACTTTGATATGCACCCAAAATGTGCTCTAGAAGAGGAAAAGGAAAGCAACATGGACATCGAGGAAGATCAAAAGGATCATATGCACCCAAATTATGCTCTAGAAGAGGAAAAGGAAAGCAACATGGATATCGAGGAAGATCAAAAGGATCAAGGCAAAGAGGAACAGAAAACAAATGAGGGATGGATTTGTGATGGTGAAGTTTGTTTCAAAGGTTAATTTGTCATTATGTCTTGTTGACTATGAGGCATTTGCTGAGCAGCATATTTGTGGGTTTTGAAATTGTTCTTTGTGAGACACTTCTATCCTAAAATCTTGTCACTTCTATGCAATACTAGTTTTATTAAACGTTGGACCTGTATTTGATCCTGATGGTACTGTCTATCTCCATGTTTATCGTCTCTATGAGTCAAGCTATTTGTGAAAGATAATGATATTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367806" ref_strand="+" ref_description="SGN-E367806 [cLPT-14-L22]">
      <seq>ttcccttaaaagacaagacctgcgagaagctggccaggtactttgagctctctacccttcctaccctagtcatcattggaacagatgggaagactcttcattctaatgttgctgaagccgtcgaggagcatggtatcctggcatatccttttacccccgagaagtttgctgaacttgagcagatacagaaagctaaactggaagcacaaacgttggagtcgattttggttactagagatcgtgatttcgtcattggaaaagatggtgaaaagatcctcgtgtctgacctcgtagggaagactattctcctttacttctcagcacattggtgtcctccatgccgtgcttttacaccacagcttaaagaggcatatgagaggataaaatccaaaaatggcccattggaagtgatattcttatctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="30933" stop="29746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30633" g_stop="30362" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30361" i_stop="30199" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30198" g_stop="30046" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="425" r_length="153" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E367806" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30633" e_stop="30362"/>
          <exon e_start="30198" e_stop="30046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTTAAAAGACAAGACCTGCAAGAAGCTGGCCAGGTACTTTGAGCTCTCTACCCTTCCTACCCTAGTCATCATTGGAACAGATGGGAAGACTCTTCATTCTAATGTTGCTGAAGCCGTCGAGGAGCATGGTATCCTGGCATATCCTTTTAGCCACGAGAAGTTTGCTGAACTTGAGCAGATACAGAAAGCTAAACTGGAAGCACAAACGTTGGAGTCGATTTTGGTTACTAGAGATCGTGATTTCGTCATTGGAAAAGATGGTGAAAAGGTAGGGACACAAACATCACATTTTTGGTTATATTTTGTTTTCGTTCAATCTTTCGTCATCAATCATGCTTTGATTACTATACTATGATTAACATGACTGACCTTTCTGTTGATATTTACTCTTATCCCTAACTTCAACTAGTAACCAAAATTTCTCTTTGTAGATCCTCGTGTCTGACCTCGTAGGGAAGACTATTCTCCTTTACTTCTCAGCACATTGGTGTCCTCCATGCCGTGCTTTTACACCACAGCTTAAAGAGGCATATGAGACGATAAAATCCAAAAATGGTCCATTGGAAGTGATATTCTTATCTAGC</genome_strand>
        <mrna_strand>TTCCCTTAAAAGACAAGACCTGCGAGAAGCTGGCCAGGTACTTTGAGCTCTCTACCCTTCCTACCCTAGTCATCATTGGAACAGATGGGAAGACTCTTCATTCTAATGTTGCTGAAGCCGTCGAGGAGCATGGTATCCTGGCATATCCTTTTACCCCCGAGAAGTTTGCTGAACTTGAGCAGATACAGAAAGCTAAACTGGAAGCACAAACGTTGGAGTCGATTTTGGTTACTAGAGATCGTGATTTCGTCATTGGAAAAGATGGTGAAAAG...................................................................................................................................................................ATCCTCGTGTCTGACCTCGTAGGGAAGACTATTCTCCTTTACTTCTCAGCACATTGGTGTCCTCCATGCCGTGCTTTTACACCACAGCTTAAAGAGGCATATGAGAGGATAAAATCCAAAAATGGCCCATTGGAAGTGATATTCTTATCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282496" ref_strand="+" ref_description="SGN-E282496 [cLER-18-G22]">
      <seq>caatggcttcttttgaagaatgtgaatcctttactgggaagctgatcgagatgtatgacaagttgaagtctcagggagaaaactttgagattgtcatgattcctcttgacgatgaagatgatgatgaatcttttaagaaagagttttcgagaatgccttggttttcacttcccttaaaagacaagacctgcaagaagctggccaggtactttgagctctctacccttcctaccctagtcatcattggaacagatgggaagactcttcattctaatgttgctgaagccgtcgaggagcatggtatcctggcatatccttttagccacgagaagtttgctgaacttgagcagatacagaaagctaaactggaagcacaaacgttggagtcgattttggttactagagatcgtgatttcgtcattggaaaagatggtgaaaagatcctcgtgtctgacctcgtagggaagactattctcctttacttctcaacacattggtgtccttcatgccgtgcttttacaccacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31101" stop="29811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30801" g_stop="30362" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30361" i_stop="30199" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30198" g_stop="30111" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="528" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E282496" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30801" e_stop="30362"/>
          <exon e_start="30198" e_stop="30111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTAAGAAAGAGTTTTCGAGAATGCCTTGGTTTTCACTTCCCTTAAAAGACAAGACCTGCAAGAAGCTGGCCAGGTACTTTGAGCTCTCTACCCTTCCTACCCTAGTCATCATTGGAACAGATGGGAAGACTCTTCATTCTAATGTTGCTGAAGCCGTCGAGGAGCATGGTATCCTGGCATATCCTTTTAGCCACGAGAAGTTTGCTGAACTTGAGCAGATACAGAAAGCTAAACTGGAAGCACAAACGTTGGAGTCGATTTTGGTTACTAGAGATCGTGATTTCGTCATTGGAAAAGATGGTGAAAAGGTAGGGACACAAACATCACATTTTTGGTTATATTTTGTTTTCGTTCAATCTTTCGTCATCAATCATGCTTTGATTACTATACTATGATTAACATGACTGACCTTTCTGTTGATATTTACTCTTATCCCTAACTTCAACTAGTAACCAAAATTTCTCTTTGTAGATCCTCGTGTCTGACCTCGTAGGGAAGACTATTCTCCTTTACTTCTCAGCACATTGGTGTCCTCCATGCCGTGCTTTTACACCACAGC</genome_strand>
        <mrna_strand>CAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTAAGAAAGAGTTTTCGAGAATGCCTTGGTTTTCACTTCCCTTAAAAGACAAGACCTGCAAGAAGCTGGCCAGGTACTTTGAGCTCTCTACCCTTCCTACCCTAGTCATCATTGGAACAGATGGGAAGACTCTTCATTCTAATGTTGCTGAAGCCGTCGAGGAGCATGGTATCCTGGCATATCCTTTTAGCCACGAGAAGTTTGCTGAACTTGAGCAGATACAGAAAGCTAAACTGGAAGCACAAACGTTGGAGTCGATTTTGGTTACTAGAGATCGTGATTTCGTCATTGGAAAAGATGGTGAAAAG...................................................................................................................................................................ATCCTCGTGTCTGACCTCGTAGGGAAGACTATTCTCCTTTACTTCTCAACACATTGGTGTCCTTCATGCCGTGCTTTTACACCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318888" ref_strand="+" ref_description="SGN-E318888 [cTOB-11-M21]">
      <seq>ttttctaaaatgccttggctcgctgtcccattctctgattctgaaacacgtaaacgtttgaatgaattgtttgctgttaggggaataccccacttagtgatccttgatgctagtgggaaggtagtgacaaatagcggggttgaaatcattgttgagcatggggtggagggctacccattcactcaagaacggctaaacgaacttaaagagcaagaagaaaccgctaaaagagaacagtctttgaaatctatcttggagtcacagtcaagaaactacgtaattgcggctgatggaaggaaggttgattcaagatgctgctcttctctccttcatttcatactcttgtttattaataaaagtttccctcattacttttttgctgtgtcttgataattatcaggtacctgttgctgagcttgaaggcaagattataggcctatatatgtcaatggcttcttttgaagaatgtgaatcctttactgggaagctgatcgagatgtatgacaagttgaagtctcagggagaaaactttgagattgtcatgattcctcttgacgatgaagatgatgatgaatctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31547" stop="30367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31247" g_stop="30667" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E318888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31247" e_stop="30667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGTTAGGGGAATACCCCACTTAGTGATCCTTGATGCTAGTGGGAAGGTAGTGACAAATAGCGGGGTTGAAATCATTGTTGAGCATGGGGTGGAGGGCTACCCATTCACTCAAGAACGGCTAAACGAACTTAAAGAGCAAGAAGAAACCGCTAAAAGAGAACAGTCTTTGAAATCTATCTTGGAGTCACAGTCAAGAAACTACGTAATTGCGGCTGATGGAAGGAAGGTTGATTCAAGATGCTGCTCTTCTCTCCTTCATTTCATACTCTTGTTTATTAATAAAAGTTTCCCTCATTACTTTTTTGCTGTGTCTTGATAATTATCAGGTACCTGTTGCTGAGCTTGAAGGCAAGATTATAGGCCTATATATGTCAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTA</genome_strand>
        <mrna_strand>TTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGTTAGGGGAATACCCCACTTAGTGATCCTTGATGCTAGTGGGAAGGTAGTGACAAATAGCGGGGTTGAAATCATTGTTGAGCATGGGGTGGAGGGCTACCCATTCACTCAAGAACGGCTAAACGAACTTAAAGAGCAAGAAGAAACCGCTAAAAGAGAACAGTCTTTGAAATCTATCTTGGAGTCACAGTCAAGAAACTACGTAATTGCGGCTGATGGAAGGAAGGTTGATTCAAGATGCTGCTCTTCTCTCCTTCATTTCATACTCTTGTTTATTAATAAAAGTTTCCCTCATTACTTTTTTGCTGTGTCTTGATAATTATCAGGTACCTGTTGCTGAGCTTGAAGGCAAGATTATAGGCCTATATATGTCAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365279" ref_strand="+" ref_description="SGN-E365279 [cLPT-2-E1]">
      <seq>cagatcgtgactttcttattcgcaacaatggtgacaaggttaagcttgatactttaaaggagaaaaaaattggtttgtacttttcagcatcatggtgtggtccgtgcaaacatttcaccccaaatttggtagaggcgtacaatgctctcctaccaaaaggagactttgaagttgttttccttactactgatatggatgatgaatcttttaaggagtacttttctaaaatgccttggctcgctgtcccattctctgattctgaaacacgtaaacgtttgaatgaattgtttgctggtaggggaataccccacttagtgatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38223" stop="30843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37923" g_stop="37886" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37885" i_stop="31428" i_length="6458">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31427" g_stop="31143" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="323" r_length="285" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E365279" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37923" e_stop="37886"/>
          <exon e_start="31427" e_stop="31143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCGTGACTTTCTTATTCGCAACAATGGTGACAAGGTATCAATTGTTACATAAATTCTTTGTTTCTCTTATAGTGAAGTAATTTGTAGTACCTGATGTTGATAAATGATAATTTGGAGAATTTCGATGTAGTTTCTTGTTATTCTTTTGGTTTATGTATTCGTATATTGGGGGCGGAGCTAGGTAGAGCACACGATTTAGCACGGAAAATTATACTGTTTAAATATTTTTTTAATTATATATGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACGCGAAAAACAAGATAACAGATTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGAGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTCCCATAGCGTCTATATATAGTGCTAAGCTACGCCCTAACAGGCTTGGGCCCAACATACAGAATCAACAGAAAACTAAGGGCCCAATACAACAACATTGTATACCGTCGGGCCGGGGGCGTCTCCGCCCCCCCGGACCCCCAGGCCAGGGGGCGCGTCGCCCCCCTGGACCCCCCGACTCGCTGACCGGGCAACAAGACCCCCGTCCTTTCTGTTTGTAGCGGGTCCGATTCAAGGCATTCAACAAATCTCCACTTTGACTTGAATTCTCCGAACAGATTCTTCAGACGCACTATGATAGTGCCAGGCCTCCCCCTCTTCCTCAGAGTTGCCCCGCAGGGCAATTAACAGCTTCTGATGTTGAGCAAGTCCAAACAGTGTTGAAACTTGCTCTGTGGAACCGGCTTTGTGAACATATCAGCAGGATTATCAGCAGTTCCTACTTTCTTCACCTTGATTCTCTTCTCACTTCTCAGAAAATGATACCTTACGTCAATATGCTTGGTTCTCTCATGATGGACTTGATCCTTGGCTAGACAAATTGCGCTCAAACTGTCACAATACACCGTAGCCTGATCATGATGCAGACCAAGATCACTAACCAGCCCTTTCAACCAAATCCCTTCTTTTGCAGCCTCTGTCAAGGCCATGTACTCCGCTTCCGTAGTAGACAAAGTCACTGTAGGTTGCAAAGTTGCCTTCCAACTGACGACAGATCCTCCAAGGGTAAACACATAGCCAGTCATCGATCTTCTTATGTCAACATCTCCAGCATAGTCTGAATCAGAATAGCCAGTAACCAAGCACTGAGTATCACCTCCATAAATGAGACCAACGTCAGATGTACCTCTAAGGTACCGGAAAATTCTCTTCACAGCCTGCCAATGTTCTCTCCCTGGTTGTCCCATGAATCTGCTCACTACACTGACTGCATGTGCTAAATCTGGCCTTGTAAAGACCATAGCATACATCAAACTTCCTACGGCACTGGCATAAGGGACTCGTGACATATACTCCTTCTCTTCTTCTGACTGTGGAGCAAACATGGCAGTGAGATGGATATTGGCAGCACTGGGGGTATCAATGGGCTTAGATGAAGACATGCCAAACCTCGCTAAGACCTTCTGAATGTAGCTTCTCTGTGACAAGAAAAGTTTCCTTCTCTCTCTGTCTCTAATGATCTCCATCCCTAAAATCTTCCGAGCGGCTCCCAGATCCTTCATCTCAAACTCAGCACTAAGTAAACCCTTCAGCTTCTGAATGTCATACTTCTTCTTTGCAGCTATCAACATATCATCTACATAAAGCACCAGATAGATGAATGAATCATCATTGAGCCTATTGTAGTAGACACAACAGTCATATGAGCTCCGAGTATAGCCTAACTTCACCATATAGCTGTCAAACCTTTTATACCACTGCCTTGGAGACTGCTTAAGTCCATATAAGGACTTCTTCAACTTGCAGACGTGATTTTCCTTCCCTGGAACTTGGAAACCATCCGGCTGAGTCATGTATATCTCTTCCTCCAACTCTCCATGTAGAAACGCTGTCTTCACATCAAGTTGTTCAAGCTCCAGATTCTGATGTGCAACTATCGCTAGTAACACTCGGATGGAAGTATGTCTGACCACTGGTGAGAAGATCTCATTGTAGTCCACTCCCTCTCTTTGGTTGAAACCTCTGGCAACAACCCTGGCTTTATACTTGACTCCTTCTGCTGGTGATATCCCTTCCTTCTTCTTGAAAACCCATTTGCAAGTAATAATCTTTCTCCTCGAAGGCTGTATGACCAGATCCCATGTTTGATTCTTGTGTAGGGACTCCATCTCATCTCCCATAGCGGCAAACCATTTTTCAGAATCAGAACTTAAAATGGCTTCTTTGTAAGTAGACGGCTCAGATGTATCTACCTCTTCAGCAACCTGCAGTGCATAACCCACCATGTCCTCAAAACCATACCTCGTAGGTGGCCGAACTCCAACCCTCCTTGGCCGATCTTGAGCTATACTCTGATGGATATCTGATGGCATAGATTCTGGAATATCAGTTTCTGTCTGTGGCTCTTGATCCTCCTCTTCAGGTTCCTTTAAATCGCTCTCGTTCTGAATGACTTGAAACTCCACCTGTTTGTCAAGACTCCCAGTTTCTGACGTAGTTGTAGGCTTCACAATGGTTCTAAGCAGAGAACTTTCATCAAAGACAACGTTCCTGCTCACAATAACCCTCTTTTCTGCTGGAGACCAGATTCTGAAACCTTTCACTCCATCTCCGTAGCCCACAAATACTCCCTTTTTAGCTCTTGGTTCTAACTTACCTTCACTAACGTGATAGTAAGCCGTACAACCAAAAGCTTTCAGATTTGAATAATCAGCAGCTTTTCCTGACCACATCTCCATAGGTGTCTTGCACTGTATGCCTGTATGTGGTCCGCGGTTAATCAAGTAGCAAGCTGTACTAACCGCTTCTGCCCAGAATCTTCTATCTAGCCCAGCATTAGAGAGCATGCACCTTGCTCTCTCTAGAAGTGTTTGATTCATCCGCTCAGCTACACCGTTCTGCTGTGGTGTATTTCTGACTGTACGATGTCGAGCAATCCCTTCATCCTTACAGAATTGATCAAATTCAGACCAACAGAATTCCAGCCCATTATCAGTTCGCAACCTCTTGATCTTCTTCCCTGTTTGATTTTCCATCAAAATTTTCCACTCCTTGAACTTCTGGAAGGCTTCACTTTTATGCTTCATCATGTACACCCAAGTCATCCTTGAGTAGTCATCAATAATGGACACAAAAAATCTGCAGCCTCCCAAAGACTCAACACGGCATGGACCCCAGCAATCAGAATGGATATAATCAAGTGTGCCTTTTGTTCTATGAATGGCCTTTGGAAACTTGTTGCGATGTAGTTTTCCAAAAACACAATGTTCACAAAACTCTAGGCTCTTAACCTTATGACCAGCAAGTAAATCCTCCTTTGACAGAATTTGCATCCCTCTTTCACCCATATGACCAAGTCTCATGTGCCATAACTTAGTCATATCCTTCTGGTGAAATTCTGACGATGCAACATGGGCTGAACCTGTAACCGTGGAACCTTGTAGAAAATACAAAGTACCACGCATGACACCTTTCAGAATCAAATTTGAACCCTTCCAGACCCGCAAGACTCCATCTTTTCCCGACCAGCTGAATCCCTTGCTGTCCAAAAGACTGAGAGATATCAGATTTTTCGTCATCAATGGAACGTGCCTGACCTCGTTCAATGTGCAGAAGCTACCGTCATGTGTCCTTATCTTGATCGAGCCTGTCCCAACCACCTTGCAGACAGAACTGTTGGCCATCGAGATGCTGCCTCCGTCTACCTACTCATAAGTCGTGAACCACTCTCTCCTAGGACAGATGTGATAGGATGCCCCAGAATCGAGAACCCACACATCTGAATGATGAGTGTGCTCATCCGCGACTAGGGCAATATCTTCTTCAGAATTGGTGTCTTCTTCAGCAACAGCAGCAGACACTGATTGTTTTTCCGATTGCTTCTTCTTCTTCGGACAATCAAATTTCCAATGTCCCTTCTCCTTGCAGTAATTACAAACATCATCCGGCTTTGCACCCTTCGACATCGGCTTATTTTTCTTTCCGCCGTTTTTCCTTCCCTTTCCGCTACTGGTGAGCAGACCGGAAGGCTGTATGTCCGTACTTGTGCCGTTAGCCTTATGCCGTAATTCCCTGCTATGAAGGGCCGATCTGACTTCTTCCAGTGACACAGTATCTTTCCCAACAATGAACGATTGAACAAAATTCTCAAACGACATTGGGAGAGATACTAACAGAATCAGGGCAGCATCTTCATCCTCGATCTTCACATCGATATTACGCAATTCTAATAACAAAGTATTCAATTGCTCTAAGTGTTCCCTGAGTTGTGTACCTTCAGCCATTCGTAAACCGAATAGACGTTGTTTCAGAAGCAGCTTGTTGGTTAGAGATTTTGTCATGTACAAACTCTCCAGCTTCAACCACAGACCAGCAGCAGTCTCTTCATCCGAGACCTCCGTGATGACGTCATCCGCGAGACACAGCATGATCGTCGAGTGCGCCTTTTCCTCCAGAATCGCCATCTCAGGAGTAACGACGGCGTTCTTGTCTTTCGACAACGGCGCCCAGAAGCCTTGCTGTTTCAACAAGGCCCGCATCTTGATCTGCCATAAACTGAAACTGTTCCTCCCTGTGAATTTGTCGATTTTCACGTTCAAAGCAGACATCTCGAATTCTCCAAGAACACCGATTAACCGAGAGGCTCTGATACCAATTTGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACGCGAAAAACAAGACAACAGATTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGGGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTCCCATAGCGTCTATATATAGTGCTAAGCTACGCCCTAACAGGCTTGGGCCCAACATACAGAATCAACAGAAAATTAAGGGCCCAATACAACAACATTGTATACCGTCGGGCCGGGGGCGTCTCCACCCCCCGGACCCCCAGGCCAGGGGGCGCGTCGCCCCCCTAGACCCCCCGACTCGCTGACCGGGCAGCAAGACCCCCGTCCTTTCTGTTTGTAGCGGGTCCGATTCAAGGCATTCAACAATATAAATAGCGGATGTTAAACTCTGCTTTTAACTTCTTATATTTATTTCTTCATAATTTGATTATTTAGTGAAATTTTAGGCTCGATTGTCGTGTGTTATGTAGATACTGAAAATCGATTTTCTCAAAAAGTAAAAATGATATGACTTGTGACAAAACAAAAGTAGAAATGATATGATTTATGACAGGAGAGGATCTAAGAAGCAAAAAGAGATGTCGGTATAATATGGAGTTTCTAATTCTCCCTTAAGGGGATGAAAAGATGTTTTGAAGTTTCAAAATAACTAATTCGGCTTTGTACGGTGTTGGTGATCTCACTTAATGAGCAAGCACTCACTAGTCACTATCTTAGTTTCTTCGATTCTCAGAGACCTCTGATTAAGGGTAGAGGGTGTGCTCGCATCTATTCCACCTAGTAAGACTTGTGGACTTCTTAAAGTTATCTAAGAAATGTTCTTATAAGATTGATCTAGGCCTTGGACAGTTTTTTGAGAACAGCCTCAAAAAGTTGTGAAAATTTGAAGGATGATCATTTTTTTTTACCGTGGTATCGGGGCTAATTTTTAATTCCATGGAATATCTGACACCTTCCACCAGCAACATGTACCAGATCACTCTATCCACCAAGGCTAAAACGGGTGGGAAGGATGATTACTTTTTAATACAAAGTTCTTCAAACTCAATTGTGTTTGTACTGGTTTGTTATTCAGAAAGGCATGATTATGATTTATAACCCGTTACTTTGCAAATCTATCTGCATTATTTACTCCACCTATGCTTTGGAAATGCTTACAACAATATCCATAAGTTTGTAACATTTAAAAGAGTAATTTTACTGTTTTAATGAAACAAGATGAAATGACTTATAGAGGGAACATAAGAACATGATAATAGGGACACATTAAATATGTAACAATTAAAAGAAAATGTAACATATATGCAATATTCAAGATTTAGCGAGAAATTGTGGAAGTAAGTTTGGTTGATCTTGGTTTCTTAATTTTTAAGTGGTTCAGAATTGGCTTGATTCGAAACCAAAAACATTATTTTGTTGTGCTTTTATTCTTTTATGGATGTTTCATTCTGTTTTGATTGAAAAAACCAAATAATTACTTGCTTGTTTCGAACAAAGTTGTAGGACCAGGCGGTCTGAAAATAGCTTTGCCTATCATTTCAAATATCATAATATGTTTGTAGTTATAAGGTATTTGAACATAAGAAAGTGAGGTGTATATGCATTGTTTTCCGTGTGCCTGACTTTTTAGTTTTACTGGTATAGACAGATATGTTAGGAAAGGAACAAGATGAATTTTGGAAATTATAGCTAGCTCTGATTAACAGATAATTTCATTTGTGGCATGTTTTTCACAAACGTTTAATTCTCAGGTTAAGCTTGATACTTTAAAGGAGAAAAAAATTGGTTTCTACTTTTCAGCATCATGGTGTGGTCCGTGCAAACATTTCACCCCAAATTTGGTAGAGGCGTACAATGCTCTCCTACCAAAAGGAGACTTTGAAGTTGTTTTCCTTACTGCTGATATGGATGATGAATCTTTTAAGGAGTACTTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGTTAGGGGAATACCCCACTTAGTGATCCTT</genome_strand>
        <mrna_strand>CAGATCGTGACTTTCTTATTCGCAACAATGGTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGCTTGATACTTTAAAGGAGAAAAAAATTGGTTTGTACTTTTCAGCATCATGGTGTGGTCCGTGCAAACATTTCACCCCAAATTTGGTAGAGGCGTACAATGCTCTCCTACCAAAAGGAGACTTTGAAGTTGTTTTCCTTACTACTGATATGGATGATGAATCTTTTAAGGAGTACTTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGGTAGGGGAATACCCCACTTAGTGATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="35071" stop="36319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35371" g_stop="36019" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35371" e_stop="36019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAAACATGGGATCTGGTCATACAGCCTTCGAGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="35072" stop="36056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35372" g_stop="35756" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35372" e_stop="35756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAAACATGGGATCTGGTCATACAGCCTTCGAGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="35730" stop="37137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36030" g_stop="36837" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36030" e_stop="36837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTAGGCTATACTCGGAGCTCATATGACTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTAGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTTGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTTTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACATAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244141" ref_strand="+" ref_description="SGN-E244141 [cLEE-1-C10]">
      <seq>ccaactgttaatccagctccaggctacagcctcattcccaatcacctgcctcctaattttccaatggctcatcacaatggttattatgtgtatccaccaccagtggacaacagttataggcagggggatgcatcaagtggaagcacttctcatgagtttgcagtggctgctgtggatcgtgacgttgagtctcctgcggaaaagagtgacgactgatcagtttctgatctgccgaaggaattgagccttacctgaaacttcaagattagtgaaaataagtagactatctttctctgttacataatttgagacctctagacaatcaagtatagttctttgtgaagtttaggaatgttccttcgaactaagcgagccaaatggtggccctcttaattggctgtttaattttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63537" stop="62526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63237" g_stop="62831" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="422"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E244141" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63237" e_stop="62831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACGGTTAATCCATCTTCAGGCTACAGCCTCATGCCCAATCACCTGCCTCCTAATTTTTCAATGGCTAATCACAATGGTTATTATGTGTATCCACCACCAATAGACAACAGTTATAGGCAGGGGGATGCATCAAGTGGAAGCACTTCTCATGCGTGTGCAGTGGCTGCTGTGGATGGTGACGTTAAGTCTCCTGCGGAAAAGAGTGAGGAGTGATCAGTTTCTGATCTGCCGAAGGAATTGAGCCTTACCTGAAACTTCAAGATTAGTGAAAA-AAGTAGACTATCTTTCTCTGTTACATAATTTGAGAACTATTGACAATCAAGTATAGTTCTTTGTGAAGTTTAGGAATGTTCCTTCGAACTAAGCGAGCCAAATGGTGGCCCTCTTAATTGGCTGTTTAATTT</genome_strand>
        <mrna_strand>CCAACTGTTAATCCAGCTCCAGGCTACAGCCTCATTCCCAATCACCTGCCTCCTAATTTTCCAATGGCTCATCACAATGGTTATTATGTGTATCCACCACCAGTGGACAACAGTTATAGGCAGGGGGATGCATCAAGTGGAAGCACTTCTCATGAGTTTGCAGTGGCTGCTGTGGATCGTGACGTTGAGTCTCCTGCGGAAAAGAGTGACGACTGATCAGTTTCTGATCTGCCGAAGGAATTGAGCCTTACCTGAAACTTCAAGATTAGTGAAAATAAGTAGACTATCTTTCTCTGTTACATAATTTGAGACCTCTAGACAATCAAGTATAGTTCTTTGTGAAGTTTAGGAATGTTCCTTCGAACTAAGCGAGCCAAATGGTGGCCCTCTTAATTGGCTGTTTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244014" ref_strand="+" ref_description="SGN-E244014 [cLEE-1-E2]">
      <seq>ccaactgttaatccagcttcaggctacagcctcattcccaatcacctgcctcctaattttccaatggctcatcacaatggttattatgtgtatccaccaccagtggacaacagttataggcagggggatgcatcaagtggaagcacttctcatgagtttgcagtggctgctgtggatcgtgacgttgagtctcctgcggaaaagagtgacgactgatcagtttctgatctgccgaaggaattgagccttacctgaaacttcaagattagtgaaaataagtagactatctttctctgttacataatttgagacctctagacaatcaagtatagttctttgtgaagtttaggaatgttccttcgaactaagcgagccaaatggtggccctcttaattggctgtttaattttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63537" stop="62526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63237" g_stop="62831" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="421"/>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E244014" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63237" e_stop="62831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACGGTTAATCCATCTTCAGGCTACAGCCTCATGCCCAATCACCTGCCTCCTAATTTTTCAATGGCTAATCACAATGGTTATTATGTGTATCCACCACCAATAGACAACAGTTATAGGCAGGGGGATGCATCAAGTGGAAGCACTTCTCATGCGTGTGCAGTGGCTGCTGTGGATGGTGACGTTAAGTCTCCTGCGGAAAAGAGTGAGGAGTGATCAGTTTCTGATCTGCCGAAGGAATTGAGCCTTACCTGAAACTTCAAGATTAGTGAAAA-AAGTAGACTATCTTTCTCTGTTACATAATTTGAGAACTATTGACAATCAAGTATAGTTCTTTGTGAAGTTTAGGAATGTTCCTTCGAACTAAGCGAGCCAAATGGTGGCCCTCTTAATTGGCTGTTTAATTT</genome_strand>
        <mrna_strand>CCAACTGTTAATCCAGCTTCAGGCTACAGCCTCATTCCCAATCACCTGCCTCCTAATTTTCCAATGGCTCATCACAATGGTTATTATGTGTATCCACCACCAGTGGACAACAGTTATAGGCAGGGGGATGCATCAAGTGGAAGCACTTCTCATGAGTTTGCAGTGGCTGCTGTGGATCGTGACGTTGAGTCTCCTGCGGAAAAGAGTGACGACTGATCAGTTTCTGATCTGCCGAAGGAATTGAGCCTTACCTGAAACTTCAAGATTAGTGAAAATAAGTAGACTATCTTTCTCTGTTACATAATTTGAGACCTCTAGACAATCAAGTATAGTTCTTTGTGAAGTTTAGGAATGTTCCTTCGAACTAAGCGAGCCAAATGGTGGCCCTCTTAATTGGCTGTTTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80973" stop="79928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80673" g_stop="80233" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80673" e_stop="80233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAAATTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAAATAGTTTAATTTTTTATTCTTTAAATGAAGGAATGAAAG-AAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAACAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGTACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTTT--AAAAAAATTAGAAATAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTATAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGATATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCC</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACAC-AAAAAAAATATTTGAATTTTTT-TTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698118" ref_strand="+" ref_description="SGN-E698118 [FA05BC04]">
      <seq>gaaatattagagagagaaagagatggatggtggttcaggaaatggaggatttcatagctatcgcagatctccacaaccaacccctgcagatcccccttcctctgatgtggagatgagcctggaactgcctgcacatctcaaccaggaagttgatgaaatcatcagtcaggagcaagacgaagtcataccaaacgtggccagaatcatgcatagcacccatccttcccatgtcaagatatccgatgacgccaaacggaccatgtaccattgtatgtctgagttcatatgctttgtaacatacgaagccaacacgcattgccagcgtgagcagcggaacacaatcactgttgaagacgtggattgggtcattaacaagtttgggtttgatgactacattgaacccttgccttactactttcctccaaatagtgaggatgatggtggcgagtgtggatctcttacaagggagtctttgttgaagtgtccaatggttgatacagcttcaagctccaatatcacaccctatagcgttcctcctaattttcctatggctcatcaccactttgtgtatccaccaccaatgggaaatggtgatatgcagggggaggcaagcacttctcagtatgcaggggtttcagtggatactgacgttgagtctcctatggaggaggataaggagtgaacaatttatcgatctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="95049" stop="92540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94749" g_stop="94646" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94645" i_stop="93437" i_length="1209">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93436" g_stop="92840" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="701" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E698118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94749" e_stop="94646"/>
          <exon e_start="93436" e_stop="92840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATATTAGAGAGAGAAAGAGATGGATGGTGGTTCAGGAAATGGAGGATTTCATAGCTATCGCAGATCTCCACAACCAACCCCTGCAGATCCCCCTTCCTCTGGTATGTTACCTATCTTCTCTTTTACTATTTACAAGTGATTTCTCTCTCTCTCTCTATATATATATGTATGGTTGGAATGTTCATATGATTTTTTATATTTGATATGCTTACTGAAGCCGAGCGTTTCTATTAAAATCAATCTCACAAGGTAAGTAGGGGAAAGGCTATGTACATATCGCACTTCCAGATTTATTTAGGGAATTATATATACTGATTACTGGACACATCCTCGTTGTTGTTGAATATTCATGAAGCTTTGTGCACACAGTTAATTTGGGCTGCTAGTTAATAATTTTTATTAATTCCTCTGAATTTTTCATCTTCTTCTTCAGCTCTGTTGAGTTTGGAAGATAATAAAAAAGGAGAGCTGCAGCTCATGTACATTTCTTGGCTTGCTCTATGTCCGTCTTTAATTAGCTAGGGACCATATTTGCATTTTTTCCCATACATATATTTGCAAAGCTATCAAAGATGAAGATCAATTCATGGTAATGGTGATCGACACGGCATTTCTGGTTTTCTTTTGGAACTTGAAAGAAAAAAATGGAAACAAGTGGCATGCATGCAATCTTGTTTATGTCCTCTCCACCGCTTTTTACGCGTGACTCACCTCTAAAAAAAATATTAAAAAGAGAGAGGAAGAAACAAACCGTCTAACGCTAGCAAGTTTGAAAATCAGTTAGCTATATTACATAAATTAAAGGCTTTAATTATGACATAAAAATTGCCTAAATTGTCAGTTACATGAAAATTGTATCTTATTCCGATTTCACGGTTATGGTAAAAGAAAAAGCCTTCTGATTCGAGGCAAGTTTGGATATATGCGAGAGTTAGTCGTTGAAGATTAGACAAAGTAAGATAGATGCTGAAAACTAAATATGAAGTGTTTTATATGTTACTTTTCTCGGTCTTTATTCACACTGATTATATAATATATGTTTTTGGAGTTCACATTAATAATGTCCAAAATTCATAGTGCCGTCTTACAGTACGACTCTCATATCCAGCTAATAATTAGTGAACTATATATTTATGTGTGCCGTTTTGTAATTTCTTCAATACTTGGGTAGGTAATAGCAAATGTTACTTAATAATGATTCATTAGACGATAAAAGGTATAGATGTGATGAAATTAGACAAATATTTTGATGATATAGACCACACTTCTTTTAATTTCACTCTGGTGCTTTTTTGTTGTATGAAATTAAGATGTGGAGATGAGCCTGGAACTGCCTGCACATCTCAACCAGGAAGTTGATGAAATCATCAGTCAGGAGCAAGACGAAGTCATACCAAACGTGGCCAGAATCATGCATAGCACCCATCCTTCCCATGTCAAGATATCCGATGACGCCAAACGGACCATGTACCATTGTATGTCTGAGTTCATATGCTTTGTAACATACGAAGCCAACACGCATTGCCAGCGTGAGCAGCGGAACACAATCACTGTTGAAGACGTGGATTGGGTCATTAACAAGTTTGGGTTTGATGACTACATTGAACCCTTGCCTTACTACTTTCCTCCAAATAGTGAGGATGATGGTGGCGAGTGTGGATCTCTTACAAGGGAGTCTTTGTTGAAGTGTCCAATGGTTGATACAGCTTCAAGCTCCAATATCACACCCTATAGCGTTCCTCCTAATTTTCCTATGGCTCATCACCACTTTGTGTATCCACCACCAATGGGAAATGGTGATATGCAGGGGGAGGCAAGCACTTCTCAGTATGCAGGGGTTTCAGTGGATACTGACGTTGAGTCTCCTATGGAGGAGGATAAGGAGTGAACAATTTATCGATCTATTG</genome_strand>
        <mrna_strand>GAAATATTAGAGAGAGAAAGAGATGGATGGTGGTTCAGGAAATGGAGGATTTCATAGCTATCGCAGATCTCCACAACCAACCCCTGCAGATCCCCCTTCCTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGAGATGAGCCTGGAACTGCCTGCACATCTCAACCAGGAAGTTGATGAAATCATCAGTCAGGAGCAAGACGAAGTCATACCAAACGTGGCCAGAATCATGCATAGCACCCATCCTTCCCATGTCAAGATATCCGATGACGCCAAACGGACCATGTACCATTGTATGTCTGAGTTCATATGCTTTGTAACATACGAAGCCAACACGCATTGCCAGCGTGAGCAGCGGAACACAATCACTGTTGAAGACGTGGATTGGGTCATTAACAAGTTTGGGTTTGATGACTACATTGAACCCTTGCCTTACTACTTTCCTCCAAATAGTGAGGATGATGGTGGCGAGTGTGGATCTCTTACAAGGGAGTCTTTGTTGAAGTGTCCAATGGTTGATACAGCTTCAAGCTCCAATATCACACCCTATAGCGTTCCTCCTAATTTTCCTATGGCTCATCACCACTTTGTGTATCCACCACCAATGGGAAATGGTGATATGCAGGGGGAGGCAAGCACTTCTCAGTATGCAGGGGTTTCAGTGGATACTGACGTTGAGTCTCCTATGGAGGAGGATAAGGAGTGAACAATTTATCGATCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316766" ref_strand="+" ref_description="SGN-E316766 [cTOB-6-C19]">
      <seq>aatgttgtgtatctcaagtatatacacgtaaagacttgttactaaccattcttcggagtgttaagaaggatatagttatcagtgataaactaccagagaatgaattagcagataagttgcgtaaacttctatttggtcagaggtaccttatcctcattgatgatgtctgggaaactactgcatgtgatgaactaatgccatgcttctatgatgccaataatggaagtagacttatcctgacaactcgccatgatcatgttgcctaccatgctaaactcgttagtgatcctcattttcttcgaaaatttactctagaagaaagttggatgctattgaagaataaagtgttcaatgaaaaatgttgccctgtagtcttagaagatgttggccaaaagatagcacaaaagtgtggtgggctacctctttcagttgtcctggtagcaggtattctcgaaacgatggagaaggaggaacattgttgggaacaagttgcaataaatttaggtccacatatccaggctaagtcagaggatataataaatcttagttaccaagatttaccatttcatttgaaaccttgctttttgtattttggagtactttcggaagatgaagagataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="-" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="112364" stop="111142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112064" g_stop="111442" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="-" ref_id="SGN-E316766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112064" e_stop="111442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGTGTATCTCAAGTATATACACGTAAAGACTTGTTACTAACCATTCTTCGGAGTGTTAAGAAGGATATAGTTATCAGTGATAAACTACCAGAGAATGAATTAGCAGATAAGTTGCGTAAACTTCTATTTGGTCAGAGGTACCTTATCCTCATTGATGATGTCTGGGAAACTACTGCATGTGATGAACTAATGCCATGCTTCTATGATGCCAATAATGGAAGTAGACTTATCCTGACAACTCGCCATGATCATGTTGCCTACCATGCTAAACTCGTTAGTGATCCTCATTTTCTTCGAAAATTTACTCTAGAAGAAAGTTGGATGCTATTGAAGAATAAAGTGTTCAATGAAAAATGTTGCCCTGTAGTCTTAGAAGATGTTGGCCAAAAGATAGCACAAAAGTGTGGTGGGCTACCTCTTTCAGTTGTCCTGGTAGCAGGTATTCTCGAAACGATGGAGAAGGAGGAACATTGTTGGGAACAAGTTGCAATAAATTTAGGTCCACATATCCAGGCTAAGTCAGAGGATATAATAAATCTTAGTTACCAAGATTTACCATTTCATTTGAAACCTTGCTTTTTGTATTTTGGAGTACTTTCGGAAGATGAAGAGATAAAG</genome_strand>
        <mrna_strand>AATGTTGTGTATCTCAAGTATATACACGTAAAGACTTGTTACTAACCATTCTTCGGAGTGTTAAGAAGGATATAGTTATCAGTGATAAACTACCAGAGAATGAATTAGCAGATAAGTTGCGTAAACTTCTATTTGGTCAGAGGTACCTTATCCTCATTGATGATGTCTGGGAAACTACTGCATGTGATGAACTAATGCCATGCTTCTATGATGCCAATAATGGAAGTAGACTTATCCTGACAACTCGCCATGATCATGTTGCCTACCATGCTAAACTCGTTAGTGATCCTCATTTTCTTCGAAAATTTACTCTAGAAGAAAGTTGGATGCTATTGAAGAATAAAGTGTTCAATGAAAAATGTTGCCCTGTAGTCTTAGAAGATGTTGGCCAAAAGATAGCACAAAAGTGTGGTGGGCTACCTCTTTCAGTTGTCCTGGTAGCAGGTATTCTCGAAACGATGGAGAAGGAGGAACATTGTTGGGAACAAGTTGCAATAAATTTAGGTCCACATATCCAGGCTAAGTCAGAGGATATAATAAATCTTAGTTACCAAGATTTACCATTTCATTTGAAACCTTGCTTTTTGTATTTTGGAGTACTTTCGGAAGATGAAGAGATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="114096" stop="115055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114393" g_stop="114809" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114393" e_stop="114809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCAAGATTTACATGGAAAACCCTTCGATGTGAAGAGTAAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAAC-AAGTGCCAAACAATGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACTAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGGCCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAATATAATATGTTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTAAAGTTGGCTGTTTGGGCT-GAACTTCGACTGCGAAAAACTGCTCTTTTTCTCTCTTTTTGGCTGCTGAAAAAACTCTCT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGT-AAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTC-TTTTAGCTGCTG-AAAAACTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315220" ref_strand="+" ref_description="SGN-E315220 [cTOA-24-P22]">
      <seq>tttagtcgaactactgaactcaatcacttgttatttactctacaattttctatcaaggctcgtcctacgtcctacctaccctaacataatcgtcacgacccaaaattatcaagaaaatggatcaattgcaaccacaacaaccagttcaagtttatcctaacaatccaaacaatttccctaaccaaccaaacaatatgccaatgactcaatcctcttcttctcataactcatccaatggttcatttgtgagtgtttttgttgtcctagctattgtttttgtcatatctgttattgcttgtgttgtgggacgtttatgtagcaagaaaagcaatggagctaataaggtgaagaaaagtagtcatggtcaaccacaaaaacaaaaagagggaaaacataataataataataagcacaatgagtttcacaataaaagaggaggaggggatatagaatttggatttgataagaaaattgcaagttctaaagtggctgcagcacatggagataatcattataaggggtctaagcctcataagaatactaatggaggagttagattttctgataatcatattgatttcaagcttggtccatgaaaactagttgtgttcatagaggaactctctctatgtactaattactttggtagtagttttaattttattttgttaaatttttaagtttttattaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0086I08-S3f3r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLe0086I08.1" temp_strand="+" temp_description="C05SLe0086I08.1  AC204082.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0086I08, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125140" stop="126433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125440" g_stop="126133" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0086I08.1" gen_strand="+" ref_id="SGN-E315220" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0086I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125440" e_stop="126133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTCGAACTACTGAACTCAATCACTTGTTATTTACTCTACAATTTTCTATCAAGGCTCGTCCTACGTCCTACCTACCCTAACATAATCGTCACGACCCAAAATTATCAAGAAAATGGATCAATTGCAACCACAACAACCAGTTCAAGTTTATCCTAACAATCCAAACAATTTCCCTAACCAACCAAACAATATGCCAATGACTCAATCCTCTTCTTCTCATAACTCATCCAATGGTTCATTTGTGAGTGTTTTTGTTGTCCTAGCTATTGTTTTTGTCATATCTGTTATTGCTTGTGTTGTGGGACGTTTATGTAGCAAGAAAAGCAATGGAGCTAATAAGGTGAAGAAAAGTAGTCATGGTCAACCACAAAAACAAAAAGAGGGAAAACATAATAATAATAATAAGCACAATGAGTTTCACAATAAAAGAGGAGGAGGGGATATAGAATTTGGATTTGATAAGAAAATTGCAAGTTCTAAAGTGGCTGCAGCACATGGAGATAATCATTATAAGGGGTCTAAGCCTCATAAGAATACTAATGGAGGAGTTAGATTTTCTGATAATCATATTGATTTCAAGCTTGGTCCATGAAAACTAGTTGTGTTCATAGAGGAACTCTCTCTATGTACTAATTACTTTGGTAGTAGTTTTAATTTTATTTTGTTAAATTTTTAAGTTTTTATTAACAT</genome_strand>
        <mrna_strand>TTTAGTCGAACTACTGAACTCAATCACTTGTTATTTACTCTACAATTTTCTATCAAGGCTCGTCCTACGTCCTACCTACCCTAACATAATCGTCACGACCCAAAATTATCAAGAAAATGGATCAATTGCAACCACAACAACCAGTTCAAGTTTATCCTAACAATCCAAACAATTTCCCTAACCAACCAAACAATATGCCAATGACTCAATCCTCTTCTTCTCATAACTCATCCAATGGTTCATTTGTGAGTGTTTTTGTTGTCCTAGCTATTGTTTTTGTCATATCTGTTATTGCTTGTGTTGTGGGACGTTTATGTAGCAAGAAAAGCAATGGAGCTAATAAGGTGAAGAAAAGTAGTCATGGTCAACCACAAAAACAAAAAGAGGGAAAACATAATAATAATAATAAGCACAATGAGTTTCACAATAAAAGAGGAGGAGGGGATATAGAATTTGGATTTGATAAGAAAATTGCAAGTTCTAAAGTGGCTGCAGCACATGGAGATAATCATTATAAGGGGTCTAAGCCTCATAAGAATACTAATGGAGGAGTTAGATTTTCTGATAATCATATTGATTTCAAGCTTGGTCCATGAAAACTAGTTGTGTTCATAGAGGAACTCTCTCTATGTACTAATTACTTTGGTAGTAGTTTTAATTTTATTTTGTTAAATTTTTAAGTTTTTATTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>155</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4917" PGL_stop="4077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4917" e_stop="4077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="4917" e_stop="4077" e_length="841"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4917" stop="4468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4893" stop="4352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4893" stop="4374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4877" stop="4077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4876" stop="4250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4823" stop="4591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4819" stop="4362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAACTCATCATTCCTCATTTTCTTTCTTCGATTTGAGAATCAATTGGGATATATTCCCAAACAATACATTAAACTAGGTAGTCGATAATATATTTGATTACATAAATCATTTATATTCGTTTTGTTCTATTTAGATTCATTTGTATTTGTACGCTAAGATGGGCGTTATATGGGATGAAGAAAAATTGGAGGAAATTGAAGCGAATAAACCGGTGAGAATGAAGATCACCGAGCCAAAGACACCATATCATCGCCCTAAAATTGATGATAATGATAATTTTGAGGAATATAACAATCGTAGCGATGAAGTGGATGATGACATGGCATCGTGTTCAAGTAAAAGTAGATCTGATGATCCTCGTAAGAATAATGATAATGACGTTGTTGTTATGGATCATGCTGATGAAGATTCCGACGAATCGGAGAGGAAAAGGAATTTCATAGAGCATAGAAGAGGTCATTATGATGAATACAAGAGAATCAAAGAGCTACAAAGGAATGGATCTCTTCTCGAAGAATTTGACGATGATGATAATGATGATGATAATAATAATGTTATTGATGATGGTGTTAAGGGCATAAAAATTGAGGAAGAAAAGGAAAACACTTCAACATAGTCATCTTATTTTCATGAATATTGTGTTTTTTTTCTCTTCGATTTAATCATTTTGGAAAACATGTAATTAGCTAAAGAATTTATCCGTAATCTCTAGCTAATCTGTCGCTAAATAGCTCCTAGCTAATTAGATTTTATGTTAATCTATCGCTCAATGAAATTACCTGTGATTTTTGTTGTTTAGCTAGGAAAATTTATGAGTAGCTAATTTCTTGTTTTCTTA</gDNA_template>
            <first_frame> F  N  S  S  F  L  I  F  F  L  R  F  E  N  Q  L  G  Y  I  P  K  Q  Y  I  K  L  G  S  R  *  Y  I  *  L  H  K  S  F  I  F  V  L  F  Y  L  D  S  F  V  F  V  R  *  D  G  R  Y  M  G  *  R  K  I  G  G  N  *  S  E  *  T  G  E  N  E  D  H  R  A  K  D  T  I  S  S  P  *  N  *  *  *  *  *  F  *  G  I  *  Q  S  *  R  *  S  G  *  *  H  G  I  V  F  K  *  K  *  I  *  *  S  S  *  E  *  *  *  *  R  C  C  Y  G  S  C  *  *  R  F  R  R  I  G  E  E  K  E  F  H  R  A  *  K  R  S  L  *  *  I  Q  E  N  Q  R  A  T  K  E  W  I  S  S  R  R  I  *  R  *  *  *  *  *  *  *  *  *  C  Y  *  *  W  C  *  G  H  K  N  *  G  R  K  G  K  H  F  N  I  V  I  L  F  S  *  I  L  C  F  F  S  L  R  F  N  H  F  G  K  H  V  I  S  *  R  I  Y  P  *  S  L  A  N  L  S  L  N  S  S  *  L  I  R  F  Y  V  N  L  S  L  N  E  I  T  C  D  F  C  C  L  A  R  K  I  Y  E  *  L  I  S  C  F  L  </first_frame>
            <second_frame>  L  T  H  H  S  S  F  S  F  F  D  L  R  I  N  W  D  I  F  P  N  N  T  L  N  *  V  V  D  N  I  F  D  Y  I  N  H  L  Y  S  F  C  S  I  *  I  H  L  Y  L  Y  A  K  M  G  V  I  W  D  E  E  K  L  E  E  I  E  A  N  K  P  V  R  M  K  I  T  E  P  K  T  P  Y  H  R  P  K  I  D  D  N  D  N  F  E  E  Y  N  N  R  S  D  E  V  D  D  D  M  A  S  C  S  S  K  S  R  S  D  D  P  R  K  N  N  D  N  D  V  V  V  M  D  H  A  D  E  D  S  D  E  S  E  R  K  R  N  F  I  E  H  R  R  G  H  Y  D  E  Y  K  R  I  K  E  L  Q  R  N  G  S  L  L  E  E  F  D  D  D  D  N  D  D  D  N  N  N  V  I  D  D  G  V  K  G  I  K  I  E  E  E  K  E  N  T  S  T  *  S  S  Y  F  H  E  Y  C  V  F  F  L  F  D  L  I  I  L  E  N  M  *  L  A  K  E  F  I  R  N  L  *  L  I  C  R  *  I  A  P  S  *  L  D  F  M  L  I  Y  R  S  M  K  L  P  V  I  F  V  V  *  L  G  K  F  M  S  S  *  F  L  V  F  L </second_frame>
            <third_frame>   *  L  I  I  P  H  F  L  S  S  I  *  E  S  I  G  I  Y  S  Q  T  I  H  *  T  R  *  S  I  I  Y  L  I  T  *  I  I  Y  I  R  F  V  L  F  R  F  I  C  I  C  T  L  R  W  A  L  Y  G  M  K  K  N  W  R  K  L  K  R  I  N  R  *  E  *  R  S  P  S  Q  R  H  H  I  I  A  L  K  L  M  I  M  I  I  L  R  N  I  T  I  V  A  M  K  W  M  M  T  W  H  R  V  Q  V  K  V  D  L  M  I  L  V  R  I  M  I  M  T  L  L  L  W  I  M  L  M  K  I  P  T  N  R  R  G  K  G  I  S  *  S  I  E  E  V  I  M  M  N  T  R  E  S  K  S  Y  K  G  M  D  L  F  S  K  N  L  T  M  M  I  M  M  M  I  I  I  M  L  L  M  M  V  L  R  A  *  K  L  R  K  K  R  K  T  L  Q  H  S  H  L  I  F  M  N  I  V  F  F  F  S  S  I  *  S  F  W  K  T  C  N  *  L  K  N  L  S  V  I  S  S  *  S  V  A  K  *  L  L  A  N  *  I  L  C  *  S  I  A  Q  *  N  Y  L  *  F  L  L  F  S  *  E  N  L  *  V  A  N  F  L  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4781" stop="4299"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHLYLYAKMGVIWDEEKLEEIEANKPVRMKITEPKTPYHRPKIDDNDNFEEYNNRSDEVDDDMASCSSKSRSDDPRKNNDNDVVVMDHADEDSDESERKRNFIEHRRGHYDEYKRIKELQRNGSLLEEFDDDDNDDDNNNVIDDGVKGIKIEEEKENTST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8269" PGL_stop="5321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8269" e_stop="8165"/>
            <exon e_start="7963" e_stop="7745"/>
            <exon e_start="5995" e_stop="5484"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.604" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8269" e_stop="8165" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7963" e_stop="7745" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.604">
            <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="5995" e_stop="5484" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8269" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8206" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8206" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8203" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8199" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8198" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8198" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7934" stop="7745"/>
              <exon start="5995" stop="5820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7818" stop="7745"/>
              <exon start="5995" stop="5549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5949" stop="5490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATATTTAGTTCTCTCGTCAAAACCAAAGCCCCATTCTGTTTTCCTACTTCCAATCTGAATCTCCAGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAG : GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG : TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTTATCTGGTGCTTATCATAACTTTTTTTTTTTAATAATCGAGAAATTTTTGAGGGCCAGACGTTAGA</gDNA_template>
            <first_frame> *  Y  L  V  L  S  S  K  P  K  P  H  S  V  F  L  L  P  I  *  I  S  R  R  I  L  R  S  Q  F  F  S  S  I  Q  :  V  *  N  K  K  W  V  N  Q  R  S  N  N  Q  F  S  L  R  L  I  S  L  G  Q  R  L  L  G  *  I  L  L  *  R  W  L  I  Q  R  W  *  C  Q  G  E  I  K  A  V  R  C  D  W  L  N  A  W  L  V  M  R  Q  G  *  S  F  S  L  L  E  M  I  K  :  S  T  *  *  K  K  V  L  L  *  F  C  A  M  Q  K  *  I  C  S  R  D  Q  *  G  L  Q  W  T  G  G  D  V  L  K  L  P  N  L  L  V  S  L  S  R  K  T  V  I  C  L  L  S  S  L  N  K  *  L  L  L  N  S  N  S  R  Q  P  I  A  M  I  M  S  R  L  Q  R  V  *  V  S  L  V  L  *  G  Y  A  N  V  P  S  S  V  K  V  K  T  T  C  F  V  K  S  E  S  S  L  L  F  F  V  V  E  V  F  V  D  S  K  V  C  S  C  N  K  Q  *  C  T  T  C  L  F  I  Y  L  E  G  L  C  S  H  H  R  T  Y  F  I  W  C  L  S  *  L  F  F  F  N  N  R  E  I  F  E  G  Q  T  L   </first_frame>
            <second_frame>  D  I  *  F  S  R  Q  N  Q  S  P  I  L  F  S  Y  F  Q  S  E  S  P  E  E  Y  S  D  L  N  F  S  L  Q  F  R :   F  K  I  K  N  G  *  T  K  E  A  T  T  S  F  H  *  G  *  S  A  *  A  N  G  Y  W  A  K  S  Y  C  E  G  G  *  Y  K  D  G  S  A  K  G  K  S  R  P  S  D  A  I  G  *  M  L  G  W  *  *  D  R  D  D  H  F  H  C  *  K  *  S  S :   R  H  D  E  R  R  C  Y  C  N  S  A  Q  C  K  N  R  Y  V  Q  G  I  N  E  A  C  S  G  Q  V  G  T  Y  *  S  Y  R  T  C  *  F  L  C  Q  G  R  Q  *  S  V  S  Y  R  V  *  T  S  D  C  C  *  T  V  T  Q  D  S  P  S  L  *  *  C  P  V  C  R  E  Y  K  *  V  W  F  F  R  D  M  L  M  S  L  H  Q  L  K  *  K  L  L  V  L  L  S  Q  K  V  L  F  F  F  L  *  W  K  F  L  *  I  A  R  Y  V  A  A  I  N  S  S  V  Q  L  A  C  L  F  I  W  K  D  C  V  A  T  I  E  L  T  L  S  G  A  Y  H  N  F  F  F  L  I  I  E  K  F  L  R  A  R  R  *  </second_frame>
            <third_frame>   I  F  S  S  L  V  K  T  K  A  P  F  C  F  P  T  S  N  L  N  L  Q  K  N  T  Q  I  S  I  F  L  F  N  S   : G  L  K  *  K  M  G  E  P  K  K  Q  Q  P  V  F  T  K  V  D  Q  L  R  P  T  A  T  G  L  N  L  T  V  K  V  V  N  T  K  M  V  V  P  R  G  N  Q  G  R  Q  M  R  L  A  E  C  L  V  G  D  E  T  G  M  I  I  F  T  A  R  N  D  Q   : V  D  M  M  K  E  G  A  T  V  I  L  R  N  A  K  I  D  M  F  K  G  S  M  R  L  A  V  D  R  W  G  R  I  E  V  T  E  P  A  S  F  S  V  K  E  D  S  N  L  S  L  I  E  F  E  Q  V  T  V  V  E  Q  *  L  K  T  A  H  R  Y  D  N  V  P  F  A  E  S  I  S  K  F  G  S  L  G  I  C  *  C  P  F  I  S  *  S  K  N  Y  L  F  C  *  V  R  K  F  S  S  F  F  C  S  G  S  F  C  R  *  Q  G  M  *  L  Q  *  T  V  V  Y  N  L  L  V  Y  L  F  G  R  I  V  *  P  P  *  N  L  L  Y  L  V  L  I  I  T  F  F  F  *  *  S  R  N  F  *  G  P  D  V  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7952" stop="7745"/>
                    <exon start="5995" stop="5805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGEPKKQQPVFTKVDQLRPTATGLNLTVKVVNTKMVVPRGNQGRQMRLAECLVGDETGMIIFTARNDQVDMMKEGATVILRNAKIDMFKGSMRLAVDRWGRIEVTEPASFSVKEDSNLSLIEFEQVTVVEQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8269" e_stop="8165"/>
            <exon e_start="7963" e_stop="7745"/>
            <exon e_start="5995" e_stop="5493"/>
            <exon e_start="5331" e_stop="5322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.886" e_score="0.998"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8269" e_stop="8165" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7963" e_stop="7745" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.604">
            <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="5995" e_stop="5493" e_length="503"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.886">
            <gDNA_intron_boundary i_start="5492" i_stop="5332" i_length="161"/>
          </intron>
          <exon e_serial="4" e_score="0.800">
            <gDNA_exon_boundary e_start="5331" e_stop="5322" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8269" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8206" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8206" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8203" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8199" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5493"/>
              <exon start="5331" stop="5322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8198" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8198" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7934" stop="7745"/>
              <exon start="5995" stop="5820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7818" stop="7745"/>
              <exon start="5995" stop="5549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303543" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATATTTAGTTCTCTCGTCAAAACCAAAGCCCCATTCTGTTTTCCTACTTCCAATCTGAATCTCCAGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAG : GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG : TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTTATCTGGTGCTTATCATAACTTTTTTTTTTTAATAATCGAGAAATTTTTGAGGGCCA : AAAAGAGAAA</gDNA_template>
            <first_frame> *  Y  L  V  L  S  S  K  P  K  P  H  S  V  F  L  L  P  I  *  I  S  R  R  I  L  R  S  Q  F  F  S  S  I  Q  :  V  *  N  K  K  W  V  N  Q  R  S  N  N  Q  F  S  L  R  L  I  S  L  G  Q  R  L  L  G  *  I  L  L  *  R  W  L  I  Q  R  W  *  C  Q  G  E  I  K  A  V  R  C  D  W  L  N  A  W  L  V  M  R  Q  G  *  S  F  S  L  L  E  M  I  K  :  S  T  *  *  K  K  V  L  L  *  F  C  A  M  Q  K  *  I  C  S  R  D  Q  *  G  L  Q  W  T  G  G  D  V  L  K  L  P  N  L  L  V  S  L  S  R  K  T  V  I  C  L  L  S  S  L  N  K  *  L  L  L  N  S  N  S  R  Q  P  I  A  M  I  M  S  R  L  Q  R  V  *  V  S  L  V  L  *  G  Y  A  N  V  P  S  S  V  K  V  K  T  T  C  F  V  K  S  E  S  S  L  L  F  F  V  V  E  V  F  V  D  S  K  V  C  S  C  N  K  Q  *  C  T  T  C  L  F  I  Y  L  E  G  L  C  S  H  H  R  T  Y  F  I  W  C  L  S  *  L  F  F  F  N  N  R  E  I  F  E  G  Q :   K  E  K </first_frame>
            <second_frame>  D  I  *  F  S  R  Q  N  Q  S  P  I  L  F  S  Y  F  Q  S  E  S  P  E  E  Y  S  D  L  N  F  S  L  Q  F  R :   F  K  I  K  N  G  *  T  K  E  A  T  T  S  F  H  *  G  *  S  A  *  A  N  G  Y  W  A  K  S  Y  C  E  G  G  *  Y  K  D  G  S  A  K  G  K  S  R  P  S  D  A  I  G  *  M  L  G  W  *  *  D  R  D  D  H  F  H  C  *  K  *  S  S :   R  H  D  E  R  R  C  Y  C  N  S  A  Q  C  K  N  R  Y  V  Q  G  I  N  E  A  C  S  G  Q  V  G  T  Y  *  S  Y  R  T  C  *  F  L  C  Q  G  R  Q  *  S  V  S  Y  R  V  *  T  S  D  C  C  *  T  V  T  Q  D  S  P  S  L  *  *  C  P  V  C  R  E  Y  K  *  V  W  F  F  R  D  M  L  M  S  L  H  Q  L  K  *  K  L  L  V  L  L  S  Q  K  V  L  F  F  F  L  *  W  K  F  L  *  I  A  R  Y  V  A  A  I  N  S  S  V  Q  L  A  C  L  F  I  W  K  D  C  V  A  T  I  E  L  T  L  S  G  A  Y  H  N  F  F  F  L  I  I  E  K  F  L  R  A   : K  K  R   </second_frame>
            <third_frame>   I  F  S  S  L  V  K  T  K  A  P  F  C  F  P  T  S  N  L  N  L  Q  K  N  T  Q  I  S  I  F  L  F  N  S   : G  L  K  *  K  M  G  E  P  K  K  Q  Q  P  V  F  T  K  V  D  Q  L  R  P  T  A  T  G  L  N  L  T  V  K  V  V  N  T  K  M  V  V  P  R  G  N  Q  G  R  Q  M  R  L  A  E  C  L  V  G  D  E  T  G  M  I  I  F  T  A  R  N  D  Q   : V  D  M  M  K  E  G  A  T  V  I  L  R  N  A  K  I  D  M  F  K  G  S  M  R  L  A  V  D  R  W  G  R  I  E  V  T  E  P  A  S  F  S  V  K  E  D  S  N  L  S  L  I  E  F  E  Q  V  T  V  V  E  Q  *  L  K  T  A  H  R  Y  D  N  V  P  F  A  E  S  I  S  K  F  G  S  L  G  I  C  *  C  P  F  I  S  *  S  K  N  Y  L  F  C  *  V  R  K  F  S  S  F  F  C  S  G  S  F  C  R  *  Q  G  M  *  L  Q  *  T  V  V  Y  N  L  L  V  Y  L  F  G  R  I  V  *  P  P  *  N  L  L  Y  L  V  L  I  I  T  F  F  F  *  *  S  R  N  F  *  G  P  :  K  R  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7952" stop="7745"/>
                    <exon start="5995" stop="5805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGEPKKQQPVFTKVDQLRPTATGLNLTVKVVNTKMVVPRGNQGRQMRLAECLVGDETGMIIFTARNDQVDMMKEGATVILRNAKIDMFKGSMRLAVDRWGRIEVTEPASFSVKEDSNLSLIEFEQVTVVEQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="8269" e_stop="8165"/>
            <exon e_start="7963" e_stop="7745"/>
            <exon e_start="5995" e_stop="5548"/>
            <exon e_start="5331" e_stop="5321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.886" e_score="1.000"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8269" e_stop="8165" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="8164" i_stop="7964" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7963" e_stop="7745" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.604">
            <gDNA_intron_boundary i_start="7744" i_stop="5996" i_length="1749"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5995" e_stop="5548" e_length="448"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.886">
            <gDNA_intron_boundary i_start="5547" i_stop="5332" i_length="216"/>
          </intron>
          <exon e_serial="4" e_score="0.727">
            <gDNA_exon_boundary e_start="5331" e_stop="5321" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8269" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8206" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8206" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8203" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8198" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8191" stop="8165"/>
              <exon start="7963" stop="7745"/>
              <exon start="5995" stop="5548"/>
              <exon start="5331" stop="5321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7934" stop="7745"/>
              <exon start="5995" stop="5820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7818" stop="7745"/>
              <exon start="5995" stop="5549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303543" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATATTTAGTTCTCTCGTCAAAACCAAAGCCCCATTCTGTTTTCCTACTTCCAATCTGAATCTCCAGAAGAATACTCAGATCTCAATTTTTCTCTTCAATTCAG : GTTTAAAATAAAAAATGGGTGAACCAAAGAAGCAACAACCAGTTTTCACTAAGGTTGATCAGCTTAGGCCAACGGCTACTGGGCTAAATCTTACTGTGAAGGTGGTTAATACAAAGATGGTAGTGCCAAGGGGAAATCAAGGCCGTCAGATGCGATTGGCTGAATGCTTGGTTGGTGATGAGACAGGGATGATCATTTTCACTGCTAGAAATGATCAAG : TCGACATGATGAAAGAAGGTGCTACTGTAATTCTGCGCAATGCAAAAATAGATATGTTCAAGGGATCAATGAGGCTTGCAGTGGACAGGTGGGGACGTATTGAAGTTACCGAACCTGCTAGTTTCTCTGTCAAGGAAGACAGTAATCTGTCTCTTATCGAGTTTGAACAAGTGACTGTTGTTGAACAGTAACTCAAGACAGCCCATCGCTATGATAATGTCCCGTTTGCAGAGAGTATAAGTAAGTTTGGTTCTTTAGGGATATGCTAATGTCCCTTCATCAGTTAAAGTAAAAACTACTTGTTTTGTTAAGTCAGAAAGTTCTCTTCTTTTTTTTGTAGTGGAAGTTTTTGTAGATAGCAAGGTATGTAGCTGCAATAAACAGTAGTGTACAACTTGCTTGTTTATTTATTTGGAAGGATTGTGTAGCCACCATAGAACTTACTTTA : AAAAGAGAAAC</gDNA_template>
            <first_frame> *  Y  L  V  L  S  S  K  P  K  P  H  S  V  F  L  L  P  I  *  I  S  R  R  I  L  R  S  Q  F  F  S  S  I  Q  :  V  *  N  K  K  W  V  N  Q  R  S  N  N  Q  F  S  L  R  L  I  S  L  G  Q  R  L  L  G  *  I  L  L  *  R  W  L  I  Q  R  W  *  C  Q  G  E  I  K  A  V  R  C  D  W  L  N  A  W  L  V  M  R  Q  G  *  S  F  S  L  L  E  M  I  K  :  S  T  *  *  K  K  V  L  L  *  F  C  A  M  Q  K  *  I  C  S  R  D  Q  *  G  L  Q  W  T  G  G  D  V  L  K  L  P  N  L  L  V  S  L  S  R  K  T  V  I  C  L  L  S  S  L  N  K  *  L  L  L  N  S  N  S  R  Q  P  I  A  M  I  M  S  R  L  Q  R  V  *  V  S  L  V  L  *  G  Y  A  N  V  P  S  S  V  K  V  K  T  T  C  F  V  K  S  E  S  S  L  L  F  F  V  V  E  V  F  V  D  S  K  V  C  S  C  N  K  Q  *  C  T  T  C  L  F  I  Y  L  E  G  L  C  S  H  H  R  T  Y  F   : K  K  R  N </first_frame>
            <second_frame>  D  I  *  F  S  R  Q  N  Q  S  P  I  L  F  S  Y  F  Q  S  E  S  P  E  E  Y  S  D  L  N  F  S  L  Q  F  R :   F  K  I  K  N  G  *  T  K  E  A  T  T  S  F  H  *  G  *  S  A  *  A  N  G  Y  W  A  K  S  Y  C  E  G  G  *  Y  K  D  G  S  A  K  G  K  S  R  P  S  D  A  I  G  *  M  L  G  W  *  *  D  R  D  D  H  F  H  C  *  K  *  S  S :   R  H  D  E  R  R  C  Y  C  N  S  A  Q  C  K  N  R  Y  V  Q  G  I  N  E  A  C  S  G  Q  V  G  T  Y  *  S  Y  R  T  C  *  F  L  C  Q  G  R  Q  *  S  V  S  Y  R  V  *  T  S  D  C  C  *  T  V  T  Q  D  S  P  S  L  *  *  C  P  V  C  R  E  Y  K  *  V  W  F  F  R  D  M  L  M  S  L  H  Q  L  K  *  K  L  L  V  L  L  S  Q  K  V  L  F  F  F  L  *  W  K  F  L  *  I  A  R  Y  V  A  A  I  N  S  S  V  Q  L  A  C  L  F  I  W  K  D  C  V  A  T  I  E  L  T  L  :  K  R  E   </second_frame>
            <third_frame>   I  F  S  S  L  V  K  T  K  A  P  F  C  F  P  T  S  N  L  N  L  Q  K  N  T  Q  I  S  I  F  L  F  N  S   : G  L  K  *  K  M  G  E  P  K  K  Q  Q  P  V  F  T  K  V  D  Q  L  R  P  T  A  T  G  L  N  L  T  V  K  V  V  N  T  K  M  V  V  P  R  G  N  Q  G  R  Q  M  R  L  A  E  C  L  V  G  D  E  T  G  M  I  I  F  T  A  R  N  D  Q   : V  D  M  M  K  E  G  A  T  V  I  L  R  N  A  K  I  D  M  F  K  G  S  M  R  L  A  V  D  R  W  G  R  I  E  V  T  E  P  A  S  F  S  V  K  E  D  S  N  L  S  L  I  E  F  E  Q  V  T  V  V  E  Q  *  L  K  T  A  H  R  Y  D  N  V  P  F  A  E  S  I  S  K  F  G  S  L  G  I  C  *  C  P  F  I  S  *  S  K  N  Y  L  F  C  *  V  R  K  F  S  S  F  F  C  S  G  S  F  C  R  *  Q  G  M  *  L  Q  *  T  V  V  Y  N  L  L  V  Y  L  F  G  R  I  V  *  P  P  *  N  L  L  * :   K  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7952" stop="7745"/>
                    <exon start="5995" stop="5805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGEPKKQQPVFTKVDQLRPTATGLNLTVKVVNTKMVVPRGNQGRQMRLAECLVGDETGMIIFTARNDQVDMMKEGATVILRNAKIDMFKGSMRLAVDRWGRIEVTEPASFSVKEDSNLSLIEFEQVTVVEQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="9945" PGL_stop="20582"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14988" e_stop="15272"/>
            <exon e_start="15442" e_stop="15503"/>
            <exon e_start="15748" e_stop="15888"/>
            <exon e_start="17135" e_stop="17183"/>
            <exon e_start="17693" e_stop="17809"/>
            <exon e_start="18097" e_stop="18150"/>
            <exon e_start="19075" e_stop="19160"/>
            <exon e_start="19619" e_stop="19724"/>
            <exon e_start="20057" e_stop="20407"/>
            <exon e_start="20559" e_stop="20582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.885" e_score="0.997"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14988" e_stop="15272" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15442" e_stop="15503" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15748" e_stop="15888" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17135" e_stop="17183" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17693" e_stop="17809" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18097" e_stop="18150" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19075" e_stop="19160" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19619" e_stop="19724" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="20057" e_stop="20407" e_length="351"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.885">
            <gDNA_intron_boundary i_start="20408" i_stop="20558" i_length="151"/>
          </intron>
          <exon e_serial="10" e_score="0.667">
            <gDNA_exon_boundary e_start="20559" e_stop="20582" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14988" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14988" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15139" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15154" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15166" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15177" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15178" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15178" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15180" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15186" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15188" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15188" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15188" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15190" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15191" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15195" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15195" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15200" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15202" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15204" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15208" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15208" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15210" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15215" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15223" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15236" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15242" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15259" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15448" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15448" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15469" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15474" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15475" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15477" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15789" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15804" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15822" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15837" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19115" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19676" stop="19724"/>
              <exon start="20057" stop="20387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20167" stop="20407"/>
              <exon start="20559" stop="20582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG : GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG : TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA : GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG : TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG : ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG : GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG : TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG : GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTAATCTACTTGTGTTTTTTTTTCA : AAACAATGAAAAGAAGAAAATCGA</gDNA_template>
            <first_frame> I  P  P  *  Q  M  G  D  V  P  S  I  K  A  L  N  I  H  K  I  K  I  S  I  *  L  K  K  I  F  S  K  F  Q  F  R  Y  I  K  Y  L  S  I  P  K  S  L  F  Y  K  Y  S  L  *  *  S  F  T  T  Q  R  T  *  V  Y  L  L  F  F  K  R  F  I  H  P  P  L  S  P  L  A  S  S  S  T  K  M  T  L  F  S  T  S  R  E  :  V  T  K  M  A  E  D  S  Y  E  D  A  I  A  G  L  K  K  L  L  S :   E  K  N  E  L  E  D  T  A  A  A  K  I  R  Q  L  T  A  E  L  E  G  A  D  G  K  K  S  D  P  D  E  K  I  R  S  G  F  A  H  F  K  A  E  K  Y  E :   K  N  P  E  L  F  G  Q  L  A  K  G  Q  S  P  K  :  F  L  V  F  A  C  S  D  S  R  V  C  P  S  H  I  L  N  F  Q  P  G  E  A  F  V  V  R  N  I  A  N  M  V  P  P  Y  D  Q  :  T  K  Y  S  G  V  G  A  A  V  E  Y  A  V  V  H  L  K  :  V  E  N  I  L  V  I  G  H  S  C  C  G  G  I  K  G  L  M  S  I  P  D  D  G  S  T  K  S :   D  F  I  E  E  W  V  K  I  C  S  T  A  K  A  K  V  K  A  E  F  C  D  L  D  H  S  E  Q  C  T  K  L  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  A  V  V  K  K  N  I  A  L  K  G  G  H  Y  D  F  E  N  G  S  F  E  L  W  N  I  D  F  K  L  T  P  S  V  A  L  *  I  C  C  K  I  F  I  *  P  I  V  I  V  F  Q  V  F  L  L  L  Y  L  I  C  I  L  M  *  M  Y  Y  *  T  T  V  W  C  V  I  T  *  I  M  L  K  W  L  F  S  A  F  S  L  M  *  S  T  C  V  F  F  S  :  K  Q  *  K  E  E  N  R </first_frame>
            <second_frame>  F  L  H  N  K  W  V  T  F  H  P  L  R  R  *  I  F  I  K  L  K  F  Q  Y  N  *  R  K  F  F  P  N  F  N  L  D  I  *  N  I  Y  P  Y  P  N  L  F  S  I  N  T  P  C  N  S  P  S  Q  H  K  E  R  E  F  I  Y  S  F  L  S  V  L  F  I  L  L  F  L  P  *  L  H  H  Q  R  K  *  L  Y  F  L  P  V  E  R :   L  R  K  W  R  K  I  H  T  K  T  P  L  Q  D  *  K  S  F  S   : V  K  R  M  S  W  K  I  Q  L  R  R  R  *  G  S  *  R  R  S  W  K  A  P  T  G  K  S  P  T  R  T  R  R  S  D  P  D  S  L  I  S  R  R  R  N  M   : R  K  I  R  S  C  L  D  N  L  P  K  V  K  A  L  S :   S  W  F  L  L  A  L  I  L  E  F  A  H  H  T  S  S  I  S  N  Q  E  K  L  L  L  S  V  T  S  P  I  W  S  H  L  T  I  R :   Q  N  I  L  E  W  V  Q  Q  S  N  M  Q  L  S  T  *  R :   W  R  I  F  W  *  L  G  T  A  V  V  E  V  L  K  D  L  C  L  F  L  M  M  G  P  L  K   : V  I  S  L  R  N  G  *  K  S  A  Q  Q  P  R  Q  R  *  R  Q  N  S  V  I  W  I  T  V  N  N  A  P  N  W  R  R :   K  L  *  M  Y  H  *  G  T  Y  *  H  I  H  L  *  E  K  L  W  *  R  K  T  L  H  *  K  V  D  T  M  I  L  R  M  D  P  L  S  F  G  I  L  T  S  N  L  L  L  L  L  H  S  K  Y  V  A  K  F  S  Y  N  Q  L  *  L  C  F  K  F  F  F  F  F  T  *  F  A  F  *  C  K  C  I  T  E  Q  Q  C  G  V  S  S  H  K  *  C  *  N  G  C  F  Q  L  L  A  *  C  N  L  L  V  F  F  F  Q :   N  N  E  K  K  K  I   </second_frame>
            <third_frame>   S  S  I  T  N  G  *  R  S  I  H  *  G  V  E  Y  S  *  N  *  N  F  N  I  I  K  E  N  F  F  Q  I  S  I  *  I  Y  K  I  F  I  H  T  Q  I  S  F  L  *  I  L  L  V  I  V  L  H  N  T  K  N  V  S  L  F  T  L  F  *  A  F  Y  S  S  S  S  F  S  L  S  F  I  I  N  E  N  D  F  I  F  Y  Q  S  R   : G  Y  E  N  G  G  R  F  I  R  R  R  H  C  R  T  E  K  A  S  Q  :  *  K  E  *  A  G  R  Y  S  C  G  E  D  K  A  V  D  G  G  A  G  R  R  R  R  E  K  V  R  P  G  R  E  D  P  I  R  I  R  S  F  Q  G  G  E  I  *  :  E  K  S  G  V  V  W  T  T  C  Q  R  S  K  P  *   : V  L  G  F  C  L  L  *  F  S  S  L  P  I  T  H  P  Q  F  P  T  R  R  S  F  C  C  P  *  H  R  Q  Y  G  P  T  L  R  S   : D  K  I  F  W  S  G  C  S  S  R  I  C  S  C  P  L  E   : G  G  E  Y  F  G  D  W  A  Q  L  L  W  R  Y  *  R  T  Y  V  Y  S  *  *  W  V  H  *  K  :  *  F  H  *  G  M  G  E  N  L  L  N  S  Q  G  K  G  K  G  R  I  L  *  F  G  S  Q  *  T  M  H  Q  I  G  E   : G  S  C  E  C  I  T  R  E  L  I  D  I  S  I  C  E  R  S  C  G  E  E  K  H  C  T  K  R  W  T  L  *  F  *  E  W  I  L  *  A  L  E  Y  *  L  Q  T  Y  S  F  C  C  T  L  N  M  L  Q  N  F  H  I  T  N  C  N  C  V  S  S  F  S  S  S  L  L  D  L  H  F  D  V  N  V  L  L  N  N  S  V  V  C  H  H  I  N  N  V  K  M  A  V  F  S  F  *  L  N  V  I  Y  L  C  F  F  F   : K  T  M  K  R  R  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15177" stop="15272"/>
                    <exon start="15442" stop="15503"/>
                    <exon start="15748" stop="15888"/>
                    <exon start="17135" stop="17183"/>
                    <exon start="17693" stop="17809"/>
                    <exon start="18097" stop="18150"/>
                    <exon start="19075" stop="19160"/>
                    <exon start="19619" stop="19724"/>
                    <exon start="20057" stop="20221"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYLLFFKRFIHPPLSPLASSSTKMTLFSTSREVTKMAEDSYEDAIAGLKKLLSEKNELEDTAAAKIRQLTAELEGADGKKSDPDEKIRSGFAHFKAEKYEKNPELFGQLAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPYDQTKYSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIPDDGSTKSDFIEEWVKICSTAKAKVKAEFCDLDHSEQCTKLEKEAVNVSLGNLLTYPFVREAVVKKNIALKGGHYDFENGSFELWNIDFKLTPSVAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14987" e_stop="15272"/>
            <exon e_start="15442" e_stop="15503"/>
            <exon e_start="15748" e_stop="15888"/>
            <exon e_start="17135" e_stop="17183"/>
            <exon e_start="17693" e_stop="17809"/>
            <exon e_start="18097" e_stop="18150"/>
            <exon e_start="19075" e_stop="19160"/>
            <exon e_start="19619" e_stop="19724"/>
            <exon e_start="20057" e_stop="20382"/>
            <exon e_start="20559" e_stop="20572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.885" e_score="0.997"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14987" e_stop="15272" e_length="286"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15442" e_stop="15503" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15748" e_stop="15888" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17135" e_stop="17183" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17693" e_stop="17809" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18097" e_stop="18150" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19075" e_stop="19160" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19619" e_stop="19724" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="20057" e_stop="20382" e_length="326"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.885">
            <gDNA_intron_boundary i_start="20383" i_stop="20558" i_length="176"/>
          </intron>
          <exon e_serial="10" e_score="0.714">
            <gDNA_exon_boundary e_start="20559" e_stop="20572" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14987" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20382"/>
              <exon start="20559" stop="20572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14988" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14988" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15139" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15154" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15166" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15177" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15178" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15178" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15180" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15186" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15188" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15188" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15188" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15190" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15191" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15195" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15195" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15200" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15202" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15204" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15208" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15208" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15210" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15215" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15223" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15236" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15242" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15259" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15448" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15448" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15469" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15474" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15475" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15477" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15789" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15804" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15822" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15837" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19115" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249161" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG : GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG : TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA : GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG : TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG : ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG : GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG : TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG : GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAAT : AAACAATGAAAAGA</gDNA_template>
            <first_frame> H  S  S  I  T  N  G  *  R  S  I  H  *  G  V  E  Y  S  *  N  *  N  F  N  I  I  K  E  N  F  F  Q  I  S  I  *  I  Y  K  I  F  I  H  T  Q  I  S  F  L  *  I  L  L  V  I  V  L  H  N  T  K  N  V  S  L  F  T  L  F  *  A  F  Y  S  S  S  S  F  S  L  S  F  I  I  N  E  N  D  F  I  F  Y  Q  S  R   : G  Y  E  N  G  G  R  F  I  R  R  R  H  C  R  T  E  K  A  S  Q  :  *  K  E  *  A  G  R  Y  S  C  G  E  D  K  A  V  D  G  G  A  G  R  R  R  R  E  K  V  R  P  G  R  E  D  P  I  R  I  R  S  F  Q  G  G  E  I  *  :  E  K  S  G  V  V  W  T  T  C  Q  R  S  K  P  *   : V  L  G  F  C  L  L  *  F  S  S  L  P  I  T  H  P  Q  F  P  T  R  R  S  F  C  C  P  *  H  R  Q  Y  G  P  T  L  R  S   : D  K  I  F  W  S  G  C  S  S  R  I  C  S  C  P  L  E   : G  G  E  Y  F  G  D  W  A  Q  L  L  W  R  Y  *  R  T  Y  V  Y  S  *  *  W  V  H  *  K  :  *  F  H  *  G  M  G  E  N  L  L  N  S  Q  G  K  G  K  G  R  I  L  *  F  G  S  Q  *  T  M  H  Q  I  G  E   : G  S  C  E  C  I  T  R  E  L  I  D  I  S  I  C  E  R  S  C  G  E  E  K  H  C  T  K  R  W  T  L  *  F  *  E  W  I  L  *  A  L  E  Y  *  L  Q  T  Y  S  F  C  C  T  L  N  M  L  Q  N  F  H  I  T  N  C  N  C  V  S  S  F  S  S  S  L  L  D  L  H  F  D  V  N  V  L  L  N  N  S  V  V  C  H  H  I  N  N  V  K  M  A  V  F  S  F  *  L  N  :  K  Q  *  K   </first_frame>
            <second_frame>  I  P  P  *  Q  M  G  D  V  P  S  I  K  A  L  N  I  H  K  I  K  I  S  I  *  L  K  K  I  F  S  K  F  Q  F  R  Y  I  K  Y  L  S  I  P  K  S  L  F  Y  K  Y  S  L  *  *  S  F  T  T  Q  R  T  *  V  Y  L  L  F  F  K  R  F  I  H  P  P  L  S  P  L  A  S  S  S  T  K  M  T  L  F  S  T  S  R  E  :  V  T  K  M  A  E  D  S  Y  E  D  A  I  A  G  L  K  K  L  L  S :   E  K  N  E  L  E  D  T  A  A  A  K  I  R  Q  L  T  A  E  L  E  G  A  D  G  K  K  S  D  P  D  E  K  I  R  S  G  F  A  H  F  K  A  E  K  Y  E :   K  N  P  E  L  F  G  Q  L  A  K  G  Q  S  P  K  :  F  L  V  F  A  C  S  D  S  R  V  C  P  S  H  I  L  N  F  Q  P  G  E  A  F  V  V  R  N  I  A  N  M  V  P  P  Y  D  Q  :  T  K  Y  S  G  V  G  A  A  V  E  Y  A  V  V  H  L  K  :  V  E  N  I  L  V  I  G  H  S  C  C  G  G  I  K  G  L  M  S  I  P  D  D  G  S  T  K  S :   D  F  I  E  E  W  V  K  I  C  S  T  A  K  A  K  V  K  A  E  F  C  D  L  D  H  S  E  Q  C  T  K  L  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  A  V  V  K  K  N  I  A  L  K  G  G  H  Y  D  F  E  N  G  S  F  E  L  W  N  I  D  F  K  L  T  P  S  V  A  L  *  I  C  C  K  I  F  I  *  P  I  V  I  V  F  Q  V  F  L  L  L  Y  L  I  C  I  L  M  *  M  Y  Y  *  T  T  V  W  C  V  I  T  *  I  M  L  K  W  L  F  S  A  F  S  L  I :   N  N  E  K  </second_frame>
            <third_frame>   F  L  H  N  K  W  V  T  F  H  P  L  R  R  *  I  F  I  K  L  K  F  Q  Y  N  *  R  K  F  F  P  N  F  N  L  D  I  *  N  I  Y  P  Y  P  N  L  F  S  I  N  T  P  C  N  S  P  S  Q  H  K  E  R  E  F  I  Y  S  F  L  S  V  L  F  I  L  L  F  L  P  *  L  H  H  Q  R  K  *  L  Y  F  L  P  V  E  R :   L  R  K  W  R  K  I  H  T  K  T  P  L  Q  D  *  K  S  F  S   : V  K  R  M  S  W  K  I  Q  L  R  R  R  *  G  S  *  R  R  S  W  K  A  P  T  G  K  S  P  T  R  T  R  R  S  D  P  D  S  L  I  S  R  R  R  N  M   : R  K  I  R  S  C  L  D  N  L  P  K  V  K  A  L  S :   S  W  F  L  L  A  L  I  L  E  F  A  H  H  T  S  S  I  S  N  Q  E  K  L  L  L  S  V  T  S  P  I  W  S  H  L  T  I  R :   Q  N  I  L  E  W  V  Q  Q  S  N  M  Q  L  S  T  *  R :   W  R  I  F  W  *  L  G  T  A  V  V  E  V  L  K  D  L  C  L  F  L  M  M  G  P  L  K   : V  I  S  L  R  N  G  *  K  S  A  Q  Q  P  R  Q  R  *  R  Q  N  S  V  I  W  I  T  V  N  N  A  P  N  W  R  R :   K  L  *  M  Y  H  *  G  T  Y  *  H  I  H  L  *  E  K  L  W  *  R  K  T  L  H  *  K  V  D  T  M  I  L  R  M  D  P  L  S  F  G  I  L  T  S  N  L  L  L  L  L  H  S  K  Y  V  A  K  F  S  Y  N  Q  L  *  L  C  F  K  F  F  F  F  F  T  *  F  A  F  *  C  K  C  I  T  E  Q  Q  C  G  V  S  S  H  K  *  C  *  N  G  C  F  Q  L  L  A  *   : *  T  M  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15177" stop="15272"/>
                    <exon start="15442" stop="15503"/>
                    <exon start="15748" stop="15888"/>
                    <exon start="17135" stop="17183"/>
                    <exon start="17693" stop="17809"/>
                    <exon start="18097" stop="18150"/>
                    <exon start="19075" stop="19160"/>
                    <exon start="19619" stop="19724"/>
                    <exon start="20057" stop="20221"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYLLFFKRFIHPPLSPLASSSTKMTLFSTSREVTKMAEDSYEDAIAGLKKLLSEKNELEDTAAAKIRQLTAELEGADGKKSDPDEKIRSGFAHFKAEKYEKNPELFGQLAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPYDQTKYSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIPDDGSTKSDFIEEWVKICSTAKAKVKAEFCDLDHSEQCTKLEKEAVNVSLGNLLTYPFVREAVVKKNIALKGGHYDFENGSFELWNIDFKLTPSVAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14986" e_stop="15272"/>
            <exon e_start="15442" e_stop="15503"/>
            <exon e_start="15748" e_stop="15888"/>
            <exon e_start="17135" e_stop="17183"/>
            <exon e_start="17693" e_stop="17809"/>
            <exon e_start="18097" e_stop="18150"/>
            <exon e_start="19075" e_stop="19160"/>
            <exon e_start="19619" e_stop="19724"/>
            <exon e_start="20057" e_stop="20385"/>
            <exon e_start="20559" e_stop="20582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.885" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14986" e_stop="15272" e_length="287"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15442" e_stop="15503" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15748" e_stop="15888" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17135" e_stop="17183" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17693" e_stop="17809" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18097" e_stop="18150" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19075" e_stop="19160" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19619" e_stop="19724" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="20057" e_stop="20385" e_length="329"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.885">
            <gDNA_intron_boundary i_start="20386" i_stop="20558" i_length="173"/>
          </intron>
          <exon e_serial="10" e_score="0.750">
            <gDNA_exon_boundary e_start="20559" e_stop="20582" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14986" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20385"/>
              <exon start="20559" stop="20582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14988" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14988" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15139" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15154" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15166" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15177" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15178" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15178" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15180" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15186" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15188" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15188" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15188" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15190" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15191" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15195" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15195" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15200" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15202" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15204" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15208" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15208" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15210" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15215" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15223" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15236" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15242" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15259" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15448" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15448" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15469" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15474" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15475" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15477" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15789" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15804" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15822" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15837" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19115" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249161" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG : GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG : TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA : GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG : TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG : ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG : GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG : TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG : GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTA : AAACAATGAAAAGAAGAAAATCGA</gDNA_template>
            <first_frame> P  F  L  H  N  K  W  V  T  F  H  P  L  R  R  *  I  F  I  K  L  K  F  Q  Y  N  *  R  K  F  F  P  N  F  N  L  D  I  *  N  I  Y  P  Y  P  N  L  F  S  I  N  T  P  C  N  S  P  S  Q  H  K  E  R  E  F  I  Y  S  F  L  S  V  L  F  I  L  L  F  L  P  *  L  H  H  Q  R  K  *  L  Y  F  L  P  V  E  R :   L  R  K  W  R  K  I  H  T  K  T  P  L  Q  D  *  K  S  F  S   : V  K  R  M  S  W  K  I  Q  L  R  R  R  *  G  S  *  R  R  S  W  K  A  P  T  G  K  S  P  T  R  T  R  R  S  D  P  D  S  L  I  S  R  R  R  N  M   : R  K  I  R  S  C  L  D  N  L  P  K  V  K  A  L  S :   S  W  F  L  L  A  L  I  L  E  F  A  H  H  T  S  S  I  S  N  Q  E  K  L  L  L  S  V  T  S  P  I  W  S  H  L  T  I  R :   Q  N  I  L  E  W  V  Q  Q  S  N  M  Q  L  S  T  *  R :   W  R  I  F  W  *  L  G  T  A  V  V  E  V  L  K  D  L  C  L  F  L  M  M  G  P  L  K   : V  I  S  L  R  N  G  *  K  S  A  Q  Q  P  R  Q  R  *  R  Q  N  S  V  I  W  I  T  V  N  N  A  P  N  W  R  R :   K  L  *  M  Y  H  *  G  T  Y  *  H  I  H  L  *  E  K  L  W  *  R  K  T  L  H  *  K  V  D  T  M  I  L  R  M  D  P  L  S  F  G  I  L  T  S  N  L  L  L  L  L  H  S  K  Y  V  A  K  F  S  Y  N  Q  L  *  L  C  F  K  F  F  F  F  F  T  *  F  A  F  *  C  K  C  I  T  E  Q  Q  C  G  V  S  S  H  K  *  C  *  N  G  C  F  Q  L  L  A  *  C   : K  T  M  K  R  R  K  S  </first_frame>
            <second_frame>  H  S  S  I  T  N  G  *  R  S  I  H  *  G  V  E  Y  S  *  N  *  N  F  N  I  I  K  E  N  F  F  Q  I  S  I  *  I  Y  K  I  F  I  H  T  Q  I  S  F  L  *  I  L  L  V  I  V  L  H  N  T  K  N  V  S  L  F  T  L  F  *  A  F  Y  S  S  S  S  F  S  L  S  F  I  I  N  E  N  D  F  I  F  Y  Q  S  R   : G  Y  E  N  G  G  R  F  I  R  R  R  H  C  R  T  E  K  A  S  Q  :  *  K  E  *  A  G  R  Y  S  C  G  E  D  K  A  V  D  G  G  A  G  R  R  R  R  E  K  V  R  P  G  R  E  D  P  I  R  I  R  S  F  Q  G  G  E  I  *  :  E  K  S  G  V  V  W  T  T  C  Q  R  S  K  P  *   : V  L  G  F  C  L  L  *  F  S  S  L  P  I  T  H  P  Q  F  P  T  R  R  S  F  C  C  P  *  H  R  Q  Y  G  P  T  L  R  S   : D  K  I  F  W  S  G  C  S  S  R  I  C  S  C  P  L  E   : G  G  E  Y  F  G  D  W  A  Q  L  L  W  R  Y  *  R  T  Y  V  Y  S  *  *  W  V  H  *  K  :  *  F  H  *  G  M  G  E  N  L  L  N  S  Q  G  K  G  K  G  R  I  L  *  F  G  S  Q  *  T  M  H  Q  I  G  E   : G  S  C  E  C  I  T  R  E  L  I  D  I  S  I  C  E  R  S  C  G  E  E  K  H  C  T  K  R  W  T  L  *  F  *  E  W  I  L  *  A  L  E  Y  *  L  Q  T  Y  S  F  C  C  T  L  N  M  L  Q  N  F  H  I  T  N  C  N  C  V  S  S  F  S  S  S  L  L  D  L  H  F  D  V  N  V  L  L  N  N  S  V  V  C  H  H  I  N  N  V  K  M  A  V  F  S  F  *  L  N  V  :  K  Q  *  K  E  E  N  R </second_frame>
            <third_frame>   I  P  P  *  Q  M  G  D  V  P  S  I  K  A  L  N  I  H  K  I  K  I  S  I  *  L  K  K  I  F  S  K  F  Q  F  R  Y  I  K  Y  L  S  I  P  K  S  L  F  Y  K  Y  S  L  *  *  S  F  T  T  Q  R  T  *  V  Y  L  L  F  F  K  R  F  I  H  P  P  L  S  P  L  A  S  S  S  T  K  M  T  L  F  S  T  S  R  E  :  V  T  K  M  A  E  D  S  Y  E  D  A  I  A  G  L  K  K  L  L  S :   E  K  N  E  L  E  D  T  A  A  A  K  I  R  Q  L  T  A  E  L  E  G  A  D  G  K  K  S  D  P  D  E  K  I  R  S  G  F  A  H  F  K  A  E  K  Y  E :   K  N  P  E  L  F  G  Q  L  A  K  G  Q  S  P  K  :  F  L  V  F  A  C  S  D  S  R  V  C  P  S  H  I  L  N  F  Q  P  G  E  A  F  V  V  R  N  I  A  N  M  V  P  P  Y  D  Q  :  T  K  Y  S  G  V  G  A  A  V  E  Y  A  V  V  H  L  K  :  V  E  N  I  L  V  I  G  H  S  C  C  G  G  I  K  G  L  M  S  I  P  D  D  G  S  T  K  S :   D  F  I  E  E  W  V  K  I  C  S  T  A  K  A  K  V  K  A  E  F  C  D  L  D  H  S  E  Q  C  T  K  L  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  A  V  V  K  K  N  I  A  L  K  G  G  H  Y  D  F  E  N  G  S  F  E  L  W  N  I  D  F  K  L  T  P  S  V  A  L  *  I  C  C  K  I  F  I  *  P  I  V  I  V  F  Q  V  F  L  L  L  Y  L  I  C  I  L  M  *  M  Y  Y  *  T  T  V  W  C  V  I  T  *  I  M  L  K  W  L  F  S  A  F  S  L  M  * :   N  N  E  K  K  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15177" stop="15272"/>
                    <exon start="15442" stop="15503"/>
                    <exon start="15748" stop="15888"/>
                    <exon start="17135" stop="17183"/>
                    <exon start="17693" stop="17809"/>
                    <exon start="18097" stop="18150"/>
                    <exon start="19075" stop="19160"/>
                    <exon start="19619" stop="19724"/>
                    <exon start="20057" stop="20221"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYLLFFKRFIHPPLSPLASSSTKMTLFSTSREVTKMAEDSYEDAIAGLKKLLSEKNELEDTAAAKIRQLTAELEGADGKKSDPDEKIRSGFAHFKAEKYEKNPELFGQLAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPYDQTKYSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIPDDGSTKSDFIEEWVKICSTAKAKVKAEFCDLDHSEQCTKLEKEAVNVSLGNLLTYPFVREAVVKKNIALKGGHYDFENGSFELWNIDFKLTPSVAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="9945" e_stop="9980"/>
            <exon e_start="10326" e_stop="10416"/>
            <exon e_start="15442" e_stop="15503"/>
            <exon e_start="15748" e_stop="15888"/>
            <exon e_start="17135" e_stop="17183"/>
            <exon e_start="17693" e_stop="17809"/>
            <exon e_start="18097" e_stop="18150"/>
            <exon e_start="19075" e_stop="19160"/>
            <exon e_start="19619" e_stop="19724"/>
            <exon e_start="20057" e_stop="20407"/>
            <exon e_start="20559" e_stop="20582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.885" e_score="0.997"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9945" e_stop="9980" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.832">
            <gDNA_intron_boundary i_start="9981" i_stop="10325" i_length="345"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10326" e_stop="10416" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10417" i_stop="15441" i_length="5025"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15442" e_stop="15503" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15748" e_stop="15888" e_length="141"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17135" e_stop="17183" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17693" e_stop="17809" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18097" e_stop="18150" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19075" e_stop="19160" e_length="86"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="19619" e_stop="19724" e_length="106"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="20057" e_stop="20407" e_length="351"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.885">
            <gDNA_intron_boundary i_start="20408" i_stop="20558" i_length="151"/>
          </intron>
          <exon e_serial="11" e_score="0.667">
            <gDNA_exon_boundary e_start="20559" e_stop="20582" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9945" stop="9980"/>
              <exon start="10326" stop="10416"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9952" stop="9980"/>
              <exon start="10326" stop="10416"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9953" stop="9980"/>
              <exon start="10326" stop="10416"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9956" stop="9980"/>
              <exon start="10326" stop="10416"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15448" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15448" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15469" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15474" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15475" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15477" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15789" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15804" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15822" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15837" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19115" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19676" stop="19724"/>
              <exon start="20057" stop="20387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20167" stop="20407"/>
              <exon start="20559" stop="20582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGATACTTCTCAAGTCTTGAATTCTACATATAAG : GAATATTATTGAGGATTAATTCTTAGTAATTATGGCTGGAAAATTAAGGAAATGCATGCTAATGTGTTGTTCAAGAAAGTCTTTCAATCAG : GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG : TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA : GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG : TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG : ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG : GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG : TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG : GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTAATCTACTTGTGTTTTTTTTTCA : AAACAATGAAAAGAAGAAAATCGA</gDNA_template>
            <first_frame> D  D  T  S  Q  V  L  N  S  T  Y  K  :  E  Y  Y  *  G  L  I  L  S  N  Y  G  W  K  I  K  E  M  H  A  N  V  L  F  K  K  V  F  Q  S   : G  Y  E  N  G  G  R  F  I  R  R  R  H  C  R  T  E  K  A  S  Q  :  *  K  E  *  A  G  R  Y  S  C  G  E  D  K  A  V  D  G  G  A  G  R  R  R  R  E  K  V  R  P  G  R  E  D  P  I  R  I  R  S  F  Q  G  G  E  I  *  :  E  K  S  G  V  V  W  T  T  C  Q  R  S  K  P  *   : V  L  G  F  C  L  L  *  F  S  S  L  P  I  T  H  P  Q  F  P  T  R  R  S  F  C  C  P  *  H  R  Q  Y  G  P  T  L  R  S   : D  K  I  F  W  S  G  C  S  S  R  I  C  S  C  P  L  E   : G  G  E  Y  F  G  D  W  A  Q  L  L  W  R  Y  *  R  T  Y  V  Y  S  *  *  W  V  H  *  K  :  *  F  H  *  G  M  G  E  N  L  L  N  S  Q  G  K  G  K  G  R  I  L  *  F  G  S  Q  *  T  M  H  Q  I  G  E   : G  S  C  E  C  I  T  R  E  L  I  D  I  S  I  C  E  R  S  C  G  E  E  K  H  C  T  K  R  W  T  L  *  F  *  E  W  I  L  *  A  L  E  Y  *  L  Q  T  Y  S  F  C  C  T  L  N  M  L  Q  N  F  H  I  T  N  C  N  C  V  S  S  F  S  S  S  L  L  D  L  H  F  D  V  N  V  L  L  N  N  S  V  V  C  H  H  I  N  N  V  K  M  A  V  F  S  F  *  L  N  V  I  Y  L  C  F  F  F   : K  T  M  K  R  R  K  S  </first_frame>
            <second_frame>  M  I  L  L  K  S  *  I  L  H  I  R :   N  I  I  E  D  *  F  L  V  I  M  A  G  K  L  R  K  C  M  L  M  C  C  S  R  K  S  F  N  Q  :  V  T  K  M  A  E  D  S  Y  E  D  A  I  A  G  L  K  K  L  L  S :   E  K  N  E  L  E  D  T  A  A  A  K  I  R  Q  L  T  A  E  L  E  G  A  D  G  K  K  S  D  P  D  E  K  I  R  S  G  F  A  H  F  K  A  E  K  Y  E :   K  N  P  E  L  F  G  Q  L  A  K  G  Q  S  P  K  :  F  L  V  F  A  C  S  D  S  R  V  C  P  S  H  I  L  N  F  Q  P  G  E  A  F  V  V  R  N  I  A  N  M  V  P  P  Y  D  Q  :  T  K  Y  S  G  V  G  A  A  V  E  Y  A  V  V  H  L  K  :  V  E  N  I  L  V  I  G  H  S  C  C  G  G  I  K  G  L  M  S  I  P  D  D  G  S  T  K  S :   D  F  I  E  E  W  V  K  I  C  S  T  A  K  A  K  V  K  A  E  F  C  D  L  D  H  S  E  Q  C  T  K  L  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  A  V  V  K  K  N  I  A  L  K  G  G  H  Y  D  F  E  N  G  S  F  E  L  W  N  I  D  F  K  L  T  P  S  V  A  L  *  I  C  C  K  I  F  I  *  P  I  V  I  V  F  Q  V  F  L  L  L  Y  L  I  C  I  L  M  *  M  Y  Y  *  T  T  V  W  C  V  I  T  *  I  M  L  K  W  L  F  S  A  F  S  L  M  *  S  T  C  V  F  F  S  :  K  Q  *  K  E  E  N  R </second_frame>
            <third_frame>   *  Y  F  S  S  L  E  F  Y  I  *   : G  I  L  L  R  I  N  S  *  *  L  W  L  E  N  *  G  N  A  C  *  C  V  V  Q  E  S  L  S  I  R :   L  R  K  W  R  K  I  H  T  K  T  P  L  Q  D  *  K  S  F  S   : V  K  R  M  S  W  K  I  Q  L  R  R  R  *  G  S  *  R  R  S  W  K  A  P  T  G  K  S  P  T  R  T  R  R  S  D  P  D  S  L  I  S  R  R  R  N  M   : R  K  I  R  S  C  L  D  N  L  P  K  V  K  A  L  S :   S  W  F  L  L  A  L  I  L  E  F  A  H  H  T  S  S  I  S  N  Q  E  K  L  L  L  S  V  T  S  P  I  W  S  H  L  T  I  R :   Q  N  I  L  E  W  V  Q  Q  S  N  M  Q  L  S  T  *  R :   W  R  I  F  W  *  L  G  T  A  V  V  E  V  L  K  D  L  C  L  F  L  M  M  G  P  L  K   : V  I  S  L  R  N  G  *  K  S  A  Q  Q  P  R  Q  R  *  R  Q  N  S  V  I  W  I  T  V  N  N  A  P  N  W  R  R :   K  L  *  M  Y  H  *  G  T  Y  *  H  I  H  L  *  E  K  L  W  *  R  K  T  L  H  *  K  V  D  T  M  I  L  R  M  D  P  L  S  F  G  I  L  T  S  N  L  L  L  L  L  H  S  K  Y  V  A  K  F  S  Y  N  Q  L  *  L  C  F  K  F  F  F  F  F  T  *  F  A  F  *  C  K  C  I  T  E  Q  Q  C  G  V  S  S  H  K  *  C  *  N  G  C  F  Q  L  L  A  *  C  N  L  L  V  F  F  F  Q :   N  N  E  K  K  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10345" stop="10416"/>
                    <exon start="15442" stop="15503"/>
                    <exon start="15748" stop="15888"/>
                    <exon start="17135" stop="17183"/>
                    <exon start="17693" stop="17809"/>
                    <exon start="18097" stop="18150"/>
                    <exon start="19075" stop="19160"/>
                    <exon start="19619" stop="19724"/>
                    <exon start="20057" stop="20221"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLVIMAGKLRKCMLMCCSRKSFNQVTKMAEDSYEDAIAGLKKLLSEKNELEDTAAAKIRQLTAELEGADGKKSDPDEKIRSGFAHFKAEKYEKNPELFGQLAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPYDQTKYSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIPDDGSTKSDFIEEWVKICSTAKAKVKAEFCDLDHSEQCTKLEKEAVNVSLGNLLTYPFVREAVVKKNIALKGGHYDFENGSFELWNIDFKLTPSVAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="14988" e_stop="15272"/>
            <exon e_start="15442" e_stop="15503"/>
            <exon e_start="15748" e_stop="15888"/>
            <exon e_start="17135" e_stop="17183"/>
            <exon e_start="17693" e_stop="17809"/>
            <exon e_start="18097" e_stop="18124"/>
            <exon e_start="19104" e_stop="19160"/>
            <exon e_start="19619" e_stop="19724"/>
            <exon e_start="20057" e_stop="20407"/>
            <exon e_start="20559" e_stop="20582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.885" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14988" e_stop="15272" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15442" e_stop="15503" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15504" i_stop="15747" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15748" e_stop="15888" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17135" e_stop="17183" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17693" e_stop="17809" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18097" e_stop="18124" e_length="28"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.877">
            <gDNA_intron_boundary i_start="18125" i_stop="19103" i_length="979"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19104" e_stop="19160" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19619" e_stop="19724" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="20057" e_stop="20407" e_length="351"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.885">
            <gDNA_intron_boundary i_start="20408" i_stop="20558" i_length="151"/>
          </intron>
          <exon e_serial="10" e_score="0.667">
            <gDNA_exon_boundary e_start="20559" e_stop="20582" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14988" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14988" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15186" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15188" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15195" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15195" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15215" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15242" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15259" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15448" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15501" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18124"/>
              <exon start="19104" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15501" stop="15503"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18124"/>
              <exon start="19104" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15789" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19115" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19676" stop="19724"/>
              <exon start="20057" stop="20387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20167" stop="20407"/>
              <exon start="20559" stop="20582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCCTCCATAACAAATGGGTGACGTTCCATCCATTAAGGCGTTGAATATTCATAAAATTAAAATTTCAATATAATTAAAGAAAATTTTTTCCAAATTTCAATTTAGATATATAAAATATTTATCCATACCCAAATCTCTTTTCTATAAATACTCCTTGTAATAGTCCTTCACAACACAAAGAACGTGAGTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG : GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG : TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA : GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG : TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG : ACAAAATATTCTGGAGTGGGTGCAGCAG : CTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG : TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG : GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTAATCTACTTGTGTTTTTTTTTCA : AAACAATGAAAAGAAGAAAATCGA</gDNA_template>
            <first_frame> I  P  P  *  Q  M  G  D  V  P  S  I  K  A  L  N  I  H  K  I  K  I  S  I  *  L  K  K  I  F  S  K  F  Q  F  R  Y  I  K  Y  L  S  I  P  K  S  L  F  Y  K  Y  S  L  *  *  S  F  T  T  Q  R  T  *  V  Y  L  L  F  F  K  R  F  I  H  P  P  L  S  P  L  A  S  S  S  T  K  M  T  L  F  S  T  S  R  E  :  V  T  K  M  A  E  D  S  Y  E  D  A  I  A  G  L  K  K  L  L  S :   E  K  N  E  L  E  D  T  A  A  A  K  I  R  Q  L  T  A  E  L  E  G  A  D  G  K  K  S  D  P  D  E  K  I  R  S  G  F  A  H  F  K  A  E  K  Y  E :   K  N  P  E  L  F  G  Q  L  A  K  G  Q  S  P  K  :  F  L  V  F  A  C  S  D  S  R  V  C  P  S  H  I  L  N  F  Q  P  G  E  A  F  V  V  R  N  I  A  N  M  V  P  P  Y  D  Q  :  T  K  Y  S  G  V  G  A  A   : A  V  V  E  V  L  K  D  L  C  L  F  L  M  M  G  P  L  K   : V  I  S  L  R  N  G  *  K  S  A  Q  Q  P  R  Q  R  *  R  Q  N  S  V  I  W  I  T  V  N  N  A  P  N  W  R  R :   K  L  *  M  Y  H  *  G  T  Y  *  H  I  H  L  *  E  K  L  W  *  R  K  T  L  H  *  K  V  D  T  M  I  L  R  M  D  P  L  S  F  G  I  L  T  S  N  L  L  L  L  L  H  S  K  Y  V  A  K  F  S  Y  N  Q  L  *  L  C  F  K  F  F  F  F  F  T  *  F  A  F  *  C  K  C  I  T  E  Q  Q  C  G  V  S  S  H  K  *  C  *  N  G  C  F  Q  L  L  A  *  C  N  L  L  V  F  F  F  Q :   N  N  E  K  K  K  I   </first_frame>
            <second_frame>  F  L  H  N  K  W  V  T  F  H  P  L  R  R  *  I  F  I  K  L  K  F  Q  Y  N  *  R  K  F  F  P  N  F  N  L  D  I  *  N  I  Y  P  Y  P  N  L  F  S  I  N  T  P  C  N  S  P  S  Q  H  K  E  R  E  F  I  Y  S  F  L  S  V  L  F  I  L  L  F  L  P  *  L  H  H  Q  R  K  *  L  Y  F  L  P  V  E  R :   L  R  K  W  R  K  I  H  T  K  T  P  L  Q  D  *  K  S  F  S   : V  K  R  M  S  W  K  I  Q  L  R  R  R  *  G  S  *  R  R  S  W  K  A  P  T  G  K  S  P  T  R  T  R  R  S  D  P  D  S  L  I  S  R  R  R  N  M   : R  K  I  R  S  C  L  D  N  L  P  K  V  K  A  L  S :   S  W  F  L  L  A  L  I  L  E  F  A  H  H  T  S  S  I  S  N  Q  E  K  L  L  L  S  V  T  S  P  I  W  S  H  L  T  I  R :   Q  N  I  L  E  W  V  Q  Q  :  L  L  W  R  Y  *  R  T  Y  V  Y  S  *  *  W  V  H  *  K  :  *  F  H  *  G  M  G  E  N  L  L  N  S  Q  G  K  G  K  G  R  I  L  *  F  G  S  Q  *  T  M  H  Q  I  G  E   : G  S  C  E  C  I  T  R  E  L  I  D  I  S  I  C  E  R  S  C  G  E  E  K  H  C  T  K  R  W  T  L  *  F  *  E  W  I  L  *  A  L  E  Y  *  L  Q  T  Y  S  F  C  C  T  L  N  M  L  Q  N  F  H  I  T  N  C  N  C  V  S  S  F  S  S  S  L  L  D  L  H  F  D  V  N  V  L  L  N  N  S  V  V  C  H  H  I  N  N  V  K  M  A  V  F  S  F  *  L  N  V  I  Y  L  C  F  F  F   : K  T  M  K  R  R  K  S  </second_frame>
            <third_frame>   S  S  I  T  N  G  *  R  S  I  H  *  G  V  E  Y  S  *  N  *  N  F  N  I  I  K  E  N  F  F  Q  I  S  I  *  I  Y  K  I  F  I  H  T  Q  I  S  F  L  *  I  L  L  V  I  V  L  H  N  T  K  N  V  S  L  F  T  L  F  *  A  F  Y  S  S  S  S  F  S  L  S  F  I  I  N  E  N  D  F  I  F  Y  Q  S  R   : G  Y  E  N  G  G  R  F  I  R  R  R  H  C  R  T  E  K  A  S  Q  :  *  K  E  *  A  G  R  Y  S  C  G  E  D  K  A  V  D  G  G  A  G  R  R  R  R  E  K  V  R  P  G  R  E  D  P  I  R  I  R  S  F  Q  G  G  E  I  *  :  E  K  S  G  V  V  W  T  T  C  Q  R  S  K  P  *   : V  L  G  F  C  L  L  *  F  S  S  L  P  I  T  H  P  Q  F  P  T  R  R  S  F  C  C  P  *  H  R  Q  Y  G  P  T  L  R  S   : D  K  I  F  W  S  G  C  S  S :   C  C  G  G  I  K  G  L  M  S  I  P  D  D  G  S  T  K  S :   D  F  I  E  E  W  V  K  I  C  S  T  A  K  A  K  V  K  A  E  F  C  D  L  D  H  S  E  Q  C  T  K  L  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  A  V  V  K  K  N  I  A  L  K  G  G  H  Y  D  F  E  N  G  S  F  E  L  W  N  I  D  F  K  L  T  P  S  V  A  L  *  I  C  C  K  I  F  I  *  P  I  V  I  V  F  Q  V  F  L  L  L  Y  L  I  C  I  L  M  *  M  Y  Y  *  T  T  V  W  C  V  I  T  *  I  M  L  K  W  L  F  S  A  F  S  L  M  *  S  T  C  V  F  F  S  :  K  Q  *  K  E  E  N  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15177" stop="15272"/>
                    <exon start="15442" stop="15503"/>
                    <exon start="15748" stop="15888"/>
                    <exon start="17135" stop="17183"/>
                    <exon start="17693" stop="17809"/>
                    <exon start="18097" stop="18124"/>
                    <exon start="19104" stop="19160"/>
                    <exon start="19619" stop="19641"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYLLFFKRFIHPPLSPLASSSTKMTLFSTSREVTKMAEDSYEDAIAGLKKLLSEKNELEDTAAAKIRQLTAELEGADGKKSDPDEKIRSGFAHFKAEKYEKNPELFGQLAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPYDQTKYSGVGAAAVVEVLKDLCLFLMMGPLKVISLRNG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="15225" e_stop="15272"/>
            <exon e_start="15442" e_stop="15503"/>
            <exon e_start="15665" e_stop="15693"/>
            <exon e_start="15748" e_stop="15888"/>
            <exon e_start="17135" e_stop="17183"/>
            <exon e_start="17693" e_stop="17809"/>
            <exon e_start="18097" e_stop="18150"/>
            <exon e_start="19075" e_stop="19160"/>
            <exon e_start="19619" e_stop="19724"/>
            <exon e_start="20057" e_stop="20407"/>
            <exon e_start="20559" e_stop="20582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="1.000" e_score="0.448"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.759"/>
          <exon-intron don_prob="1.000" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.885" e_score="0.997"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15225" e_stop="15272" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15442" e_stop="15503" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15504" i_stop="15664" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="0.448">
            <gDNA_exon_boundary e_start="15665" e_stop="15693" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15694" i_stop="15747" i_length="54"/>
          </intron>
          <exon e_serial="4" e_score="0.759">
            <gDNA_exon_boundary e_start="15748" e_stop="15888" e_length="141"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17135" e_stop="17183" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17693" e_stop="17809" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18097" e_stop="18150" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19075" e_stop="19160" e_length="86"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="19619" e_stop="19724" e_length="106"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="20057" e_stop="20407" e_length="351"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.885">
            <gDNA_intron_boundary i_start="20408" i_stop="20558" i_length="151"/>
          </intron>
          <exon e_serial="11" e_score="0.667">
            <gDNA_exon_boundary e_start="20559" e_stop="20582" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15225" stop="15272"/>
              <exon start="15442" stop="15503"/>
              <exon start="15665" stop="15693"/>
              <exon start="15748" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15789" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15804" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15822" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15837" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19115" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19676" stop="19724"/>
              <exon start="20057" stop="20387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20167" stop="20407"/>
              <exon start="20559" stop="20582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG : GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAGCTTCTCAG : TGTCTACATTACACTGGGTCCCACACGGA : TGAAAAGAATGAGCTGGAAGATACAGCTGCGGCGAAGATAAGGCAGTTGACGGCGGAGCTGGAAGGCGCCGACGGGAAAAAGTCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA : GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG : TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG : ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG : GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG : TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG : GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTAATCTACTTGTGTTTTTTTTTCA : AAACAATGAAAAGAAGAAAATCGA</gDNA_template>
            <first_frame> L  A  S  S  S  T  K  M  T  L  F  S  T  S  R  E  :  V  T  K  M  A  E  D  S  Y  E  D  A  I  A  G  L  K  K  L  L  S :   V  Y  I  T  L  G  P  T  R   : M  K  R  M  S  W  K  I  Q  L  R  R  R  *  G  S  *  R  R  S  W  K  A  P  T  G  K  S  P  T  R  T  R  R  S  D  P  D  S  L  I  S  R  R  R  N  M   : R  K  I  R  S  C  L  D  N  L  P  K  V  K  A  L  S :   S  W  F  L  L  A  L  I  L  E  F  A  H  H  T  S  S  I  S  N  Q  E  K  L  L  L  S  V  T  S  P  I  W  S  H  L  T  I  R :   Q  N  I  L  E  W  V  Q  Q  S  N  M  Q  L  S  T  *  R :   W  R  I  F  W  *  L  G  T  A  V  V  E  V  L  K  D  L  C  L  F  L  M  M  G  P  L  K   : V  I  S  L  R  N  G  *  K  S  A  Q  Q  P  R  Q  R  *  R  Q  N  S  V  I  W  I  T  V  N  N  A  P  N  W  R  R :   K  L  *  M  Y  H  *  G  T  Y  *  H  I  H  L  *  E  K  L  W  *  R  K  T  L  H  *  K  V  D  T  M  I  L  R  M  D  P  L  S  F  G  I  L  T  S  N  L  L  L  L  L  H  S  K  Y  V  A  K  F  S  Y  N  Q  L  *  L  C  F  K  F  F  F  F  F  T  *  F  A  F  *  C  K  C  I  T  E  Q  Q  C  G  V  S  S  H  K  *  C  *  N  G  C  F  Q  L  L  A  *  C  N  L  L  V  F  F  F  Q :   N  N  E  K  K  K  I   </first_frame>
            <second_frame>  *  L  H  H  Q  R  K  *  L  Y  F  L  P  V  E  R :   L  R  K  W  R  K  I  H  T  K  T  P  L  Q  D  *  K  S  F  S   : V  S  T  L  H  W  V  P  H  G  :  *  K  E  *  A  G  R  Y  S  C  G  E  D  K  A  V  D  G  G  A  G  R  R  R  R  E  K  V  R  P  G  R  E  D  P  I  R  I  R  S  F  Q  G  G  E  I  *  :  E  K  S  G  V  V  W  T  T  C  Q  R  S  K  P  *   : V  L  G  F  C  L  L  *  F  S  S  L  P  I  T  H  P  Q  F  P  T  R  R  S  F  C  C  P  *  H  R  Q  Y  G  P  T  L  R  S   : D  K  I  F  W  S  G  C  S  S  R  I  C  S  C  P  L  E   : G  G  E  Y  F  G  D  W  A  Q  L  L  W  R  Y  *  R  T  Y  V  Y  S  *  *  W  V  H  *  K  :  *  F  H  *  G  M  G  E  N  L  L  N  S  Q  G  K  G  K  G  R  I  L  *  F  G  S  Q  *  T  M  H  Q  I  G  E   : G  S  C  E  C  I  T  R  E  L  I  D  I  S  I  C  E  R  S  C  G  E  E  K  H  C  T  K  R  W  T  L  *  F  *  E  W  I  L  *  A  L  E  Y  *  L  Q  T  Y  S  F  C  C  T  L  N  M  L  Q  N  F  H  I  T  N  C  N  C  V  S  S  F  S  S  S  L  L  D  L  H  F  D  V  N  V  L  L  N  N  S  V  V  C  H  H  I  N  N  V  K  M  A  V  F  S  F  *  L  N  V  I  Y  L  C  F  F  F   : K  T  M  K  R  R  K  S  </second_frame>
            <third_frame>   S  F  I  I  N  E  N  D  F  I  F  Y  Q  S  R   : G  Y  E  N  G  G  R  F  I  R  R  R  H  C  R  T  E  K  A  S  Q  :  C  L  H  Y  T  G  S  H  T  D :   E  K  N  E  L  E  D  T  A  A  A  K  I  R  Q  L  T  A  E  L  E  G  A  D  G  K  K  S  D  P  D  E  K  I  R  S  G  F  A  H  F  K  A  E  K  Y  E :   K  N  P  E  L  F  G  Q  L  A  K  G  Q  S  P  K  :  F  L  V  F  A  C  S  D  S  R  V  C  P  S  H  I  L  N  F  Q  P  G  E  A  F  V  V  R  N  I  A  N  M  V  P  P  Y  D  Q  :  T  K  Y  S  G  V  G  A  A  V  E  Y  A  V  V  H  L  K  :  V  E  N  I  L  V  I  G  H  S  C  C  G  G  I  K  G  L  M  S  I  P  D  D  G  S  T  K  S :   D  F  I  E  E  W  V  K  I  C  S  T  A  K  A  K  V  K  A  E  F  C  D  L  D  H  S  E  Q  C  T  K  L  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  A  V  V  K  K  N  I  A  L  K  G  G  H  Y  D  F  E  N  G  S  F  E  L  W  N  I  D  F  K  L  T  P  S  V  A  L  *  I  C  C  K  I  F  I  *  P  I  V  I  V  F  Q  V  F  L  L  L  Y  L  I  C  I  L  M  *  M  Y  Y  *  T  T  V  W  C  V  I  T  *  I  M  L  K  W  L  F  S  A  F  S  L  M  *  S  T  C  V  F  F  S  :  K  Q  *  K  E  E  N  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15227" stop="15272"/>
                    <exon start="15442" stop="15503"/>
                    <exon start="15665" stop="15693"/>
                    <exon start="15748" stop="15888"/>
                    <exon start="17135" stop="17183"/>
                    <exon start="17693" stop="17809"/>
                    <exon start="18097" stop="18150"/>
                    <exon start="19075" stop="19160"/>
                    <exon start="19619" stop="19724"/>
                    <exon start="20057" stop="20221"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFIINENDFIFYQSRGYENGGRFIRRRHCRTEKASQCLHYTGSHTDEKNELEDTAAAKIRQLTAELEGADGKKSDPDEKIRSGFAHFKAEKYEKNPELFGQLAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPYDQTKYSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIPDDGSTKSDFIEEWVKICSTAKAKVKAEFCDLDHSEQCTKLEKEAVNVSLGNLLTYPFVREAVVKKNIALKGGHYDFENGSFELWNIDFKLTPSVAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="15177" e_stop="15272"/>
            <exon e_start="15442" e_stop="15495"/>
            <exon e_start="15830" e_stop="15888"/>
            <exon e_start="17135" e_stop="17183"/>
            <exon e_start="17693" e_stop="17809"/>
            <exon e_start="18097" e_stop="18150"/>
            <exon e_start="19075" e_stop="19160"/>
            <exon e_start="19619" e_stop="19724"/>
            <exon e_start="20057" e_stop="20407"/>
            <exon e_start="20559" e_stop="20582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.885" e_score="0.997"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15177" e_stop="15272" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15273" i_stop="15441" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15442" e_stop="15495" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15496" i_stop="15829" i_length="334"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15830" e_stop="15888" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15889" i_stop="17134" i_length="1246"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17135" e_stop="17183" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="17184" i_stop="17692" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17693" e_stop="17809" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17810" i_stop="18096" i_length="287"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18097" e_stop="18150" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18151" i_stop="19074" i_length="924"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19075" e_stop="19160" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19161" i_stop="19618" i_length="458"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19619" e_stop="19724" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19725" i_stop="20056" i_length="332"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="20057" e_stop="20407" e_length="351"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.885">
            <gDNA_intron_boundary i_start="20408" i_stop="20558" i_length="151"/>
          </intron>
          <exon e_serial="10" e_score="0.667">
            <gDNA_exon_boundary e_start="20559" e_stop="20582" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15177" stop="15272"/>
              <exon start="15442" stop="15495"/>
              <exon start="15830" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15837" stop="15888"/>
              <exon start="17135" stop="17183"/>
              <exon start="17693" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17770" stop="17809"/>
              <exon start="18097" stop="18150"/>
              <exon start="19075" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19115" stop="19160"/>
              <exon start="19619" stop="19724"/>
              <exon start="20057" stop="20282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19676" stop="19724"/>
              <exon start="20057" stop="20387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20167" stop="20407"/>
              <exon start="20559" stop="20582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTATTTACTCTTTTTTAAGCGTTTTATTCATCCTCCTCTTTCTCCCTTAGCTTCATCATCAACGAAAATGACTTTATTTTCTACCAGTCGAGAG : GTTACGAAAATGGCGGAAGATTCATACGAAGACGCCATTGCAGGACTGAAAAAG : TCCGACCCGGACGAGAAGATCCGATCCGGATTCGCTCATTTCAAGGCGGAGAAATATGA : GAAAAATCCGGAGTTGTTTGGACAACTTGCCAAAGGTCAAAGCCCTAAG : TTCTTGGTTTTTGCTTGCTCTGATTCTCGAGTTTGCCCATCACACATCCTCAATTTCCAACCAGGAGAAGCTTTTGTTGTCCGTAACATCGCCAATATGGTCCCACCTTACGATCAG : ACAAAATATTCTGGAGTGGGTGCAGCAGTCGAATATGCAGTTGTCCACTTGAAG : GTGGAGAATATTTTGGTGATTGGGCACAGCTGTTGTGGAGGTATTAAAGGACTTATGTCTATTCCTGATGATGGGTCCACTAAAAG : TGATTTCATTGAGGAATGGGTGAAAATCTGCTCAACAGCCAAGGCAAAGGTAAAGGCAGAATTCTGTGATTTGGATCACAGTGAACAATGCACCAAATTGGAGAAG : GAAGCTGTGAATGTATCACTAGGGAACTTATTGACATATCCATTTGTGAGAGAAGCTGTGGTGAAGAAAAACATTGCACTAAAAGGTGGACACTATGATTTTGAGAATGGATCCTTTGAGCTTTGGAATATTGACTTCAAACTTACTCCTTCTGTTGCACTCTAAATATGTTGCAAAATTTTCATATAACCAATTGTAATTGTGTTTCAAGTTTTTCTTCTTCTTTACTTGATTTGCATTTTGATGTAAATGTATTACTGAACAACAGTGTGGTGTGTCATCACATAAATAATGTTAAAATGGCTGTTTTCAGCTTTTAGCTTAATGTAATCTACTTGTGTTTTTTTTTCA : AAACAATGAAAAGAAGAAAATCGA</gDNA_template>
            <first_frame> V  Y  L  L  F  F  K  R  F  I  H  P  P  L  S  P  L  A  S  S  S  T  K  M  T  L  F  S  T  S  R  E  :  V  T  K  M  A  E  D  S  Y  E  D  A  I  A  G  L  K  K  :  S  D  P  D  E  K  I  R  S  G  F  A  H  F  K  A  E  K  Y  E :   K  N  P  E  L  F  G  Q  L  A  K  G  Q  S  P  K  :  F  L  V  F  A  C  S  D  S  R  V  C  P  S  H  I  L  N  F  Q  P  G  E  A  F  V  V  R  N  I  A  N  M  V  P  P  Y  D  Q  :  T  K  Y  S  G  V  G  A  A  V  E  Y  A  V  V  H  L  K  :  V  E  N  I  L  V  I  G  H  S  C  C  G  G  I  K  G  L  M  S  I  P  D  D  G  S  T  K  S :   D  F  I  E  E  W  V  K  I  C  S  T  A  K  A  K  V  K  A  E  F  C  D  L  D  H  S  E  Q  C  T  K  L  E  K  :  E  A  V  N  V  S  L  G  N  L  L  T  Y  P  F  V  R  E  A  V  V  K  K  N  I  A  L  K  G  G  H  Y  D  F  E  N  G  S  F  E  L  W  N  I  D  F  K  L  T  P  S  V  A  L  *  I  C  C  K  I  F  I  *  P  I  V  I  V  F  Q  V  F  L  L  L  Y  L  I  C  I  L  M  *  M  Y  Y  *  T  T  V  W  C  V  I  T  *  I  M  L  K  W  L  F  S  A  F  S  L  M  *  S  T  C  V  F  F  S  :  K  Q  *  K  E  E  N  R </first_frame>
            <second_frame>  F  I  Y  S  F  L  S  V  L  F  I  L  L  F  L  P  *  L  H  H  Q  R  K  *  L  Y  F  L  P  V  E  R :   L  R  K  W  R  K  I  H  T  K  T  P  L  Q  D  *  K  S :   P  T  R  T  R  R  S  D  P  D  S  L  I  S  R  R  R  N  M   : R  K  I  R  S  C  L  D  N  L  P  K  V  K  A  L  S :   S  W  F  L  L  A  L  I  L  E  F  A  H  H  T  S  S  I  S  N  Q  E  K  L  L  L  S  V  T  S  P  I  W  S  H  L  T  I  R :   Q  N  I  L  E  W  V  Q  Q  S  N  M  Q  L  S  T  *  R :   W  R  I  F  W  *  L  G  T  A  V  V  E  V  L  K  D  L  C  L  F  L  M  M  G  P  L  K   : V  I  S  L  R  N  G  *  K  S  A  Q  Q  P  R  Q  R  *  R  Q  N  S  V  I  W  I  T  V  N  N  A  P  N  W  R  R :   K  L  *  M  Y  H  *  G  T  Y  *  H  I  H  L  *  E  K  L  W  *  R  K  T  L  H  *  K  V  D  T  M  I  L  R  M  D  P  L  S  F  G  I  L  T  S  N  L  L  L  L  L  H  S  K  Y  V  A  K  F  S  Y  N  Q  L  *  L  C  F  K  F  F  F  F  F  T  *  F  A  F  *  C  K  C  I  T  E  Q  Q  C  G  V  S  S  H  K  *  C  *  N  G  C  F  Q  L  L  A  *  C  N  L  L  V  F  F  F  Q :   N  N  E  K  K  K  I   </second_frame>
            <third_frame>   L  F  T  L  F  *  A  F  Y  S  S  S  S  F  S  L  S  F  I  I  N  E  N  D  F  I  F  Y  Q  S  R   : G  Y  E  N  G  G  R  F  I  R  R  R  H  C  R  T  E  K   : V  R  P  G  R  E  D  P  I  R  I  R  S  F  Q  G  G  E  I  *  :  E  K  S  G  V  V  W  T  T  C  Q  R  S  K  P  *   : V  L  G  F  C  L  L  *  F  S  S  L  P  I  T  H  P  Q  F  P  T  R  R  S  F  C  C  P  *  H  R  Q  Y  G  P  T  L  R  S   : D  K  I  F  W  S  G  C  S  S  R  I  C  S  C  P  L  E   : G  G  E  Y  F  G  D  W  A  Q  L  L  W  R  Y  *  R  T  Y  V  Y  S  *  *  W  V  H  *  K  :  *  F  H  *  G  M  G  E  N  L  L  N  S  Q  G  K  G  K  G  R  I  L  *  F  G  S  Q  *  T  M  H  Q  I  G  E   : G  S  C  E  C  I  T  R  E  L  I  D  I  S  I  C  E  R  S  C  G  E  E  K  H  C  T  K  R  W  T  L  *  F  *  E  W  I  L  *  A  L  E  Y  *  L  Q  T  Y  S  F  C  C  T  L  N  M  L  Q  N  F  H  I  T  N  C  N  C  V  S  S  F  S  S  S  L  L  D  L  H  F  D  V  N  V  L  L  N  N  S  V  V  C  H  H  I  N  N  V  K  M  A  V  F  S  F  *  L  N  V  I  Y  L  C  F  F  F   : K  T  M  K  R  R  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15177" stop="15272"/>
                    <exon start="15442" stop="15495"/>
                    <exon start="15830" stop="15888"/>
                    <exon start="17135" stop="17183"/>
                    <exon start="17693" stop="17809"/>
                    <exon start="18097" stop="18150"/>
                    <exon start="19075" stop="19160"/>
                    <exon start="19619" stop="19724"/>
                    <exon start="20057" stop="20221"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYLLFFKRFIHPPLSPLASSSTKMTLFSTSREVTKMAEDSYEDAIAGLKKSDPDEKIRSGFAHFKAEKYEKNPELFGQLAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPYDQTKYSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIPDDGSTKSDFIEEWVKICSTAKAKVKAEFCDLDHSEQCTKLEKEAVNVSLGNLLTYPFVREAVVKKNIALKGGHYDFENGSFELWNIDFKLTPSVAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24508" PGL_stop="20922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24508" e_stop="23732"/>
            <exon e_start="22912" e_stop="22589"/>
            <exon e_start="22076" e_stop="21917"/>
            <exon e_start="21427" e_stop="20922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="24508" e_stop="23732" e_length="777"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22912" e_stop="22589" e_length="324"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22076" e_stop="21917" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.970">
            <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21427" e_stop="20922" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24508" stop="23732"/>
              <exon start="22912" stop="22848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24211" stop="23732"/>
              <exon start="22912" stop="22799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24210" stop="23732"/>
              <exon start="22912" stop="22861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24205" stop="23732"/>
              <exon start="22912" stop="22589"/>
              <exon start="22076" stop="21978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24205" stop="23732"/>
              <exon start="22912" stop="22825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24205" stop="23732"/>
              <exon start="22912" stop="22837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24204" stop="23732"/>
              <exon start="22912" stop="22758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24197" stop="23870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24193" stop="23732"/>
              <exon start="22912" stop="22679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24190" stop="23732"/>
              <exon start="22912" stop="22631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24176" stop="23732"/>
              <exon start="22912" stop="22894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24174" stop="23732"/>
              <exon start="22912" stop="22884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24167" stop="23732"/>
              <exon start="22912" stop="22627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24165" stop="23732"/>
              <exon start="22912" stop="22724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24164" stop="23732"/>
              <exon start="22912" stop="22589"/>
              <exon start="22076" stop="22051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24164" stop="23732"/>
              <exon start="22912" stop="22635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24164" stop="23732"/>
              <exon start="22912" stop="22734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24162" stop="23732"/>
              <exon start="22912" stop="22808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24162" stop="23732"/>
              <exon start="22912" stop="22816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24162" stop="23732"/>
              <exon start="22912" stop="22886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24162" stop="23738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24160" stop="23736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24159" stop="23732"/>
              <exon start="22912" stop="22589"/>
              <exon start="22076" stop="21971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24159" stop="23732"/>
              <exon start="22912" stop="22622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24156" stop="23732"/>
              <exon start="22912" stop="22599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24156" stop="23732"/>
              <exon start="22912" stop="22627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24155" stop="23732"/>
              <exon start="22912" stop="22709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24153" stop="23732"/>
              <exon start="22912" stop="22589"/>
              <exon start="22076" stop="22040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24152" stop="23732"/>
              <exon start="22912" stop="22812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24148" stop="23732"/>
              <exon start="22912" stop="22783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24143" stop="23732"/>
              <exon start="22912" stop="22895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24112" stop="23732"/>
              <exon start="22912" stop="22808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24058" stop="23732"/>
              <exon start="22912" stop="22589"/>
              <exon start="22076" stop="22049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23873" stop="23732"/>
              <exon start="22912" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23760" stop="23732"/>
              <exon start="22912" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22906" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22788" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22775" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22703" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="20991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22640" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22614" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21948" stop="21917"/>
              <exon start="21427" stop="20993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253309" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21390" stop="21053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21338" stop="20922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21274" stop="21049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221507" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAGAGTGACCATTTCAAAAGTATAAAATTTTCTTCATATTCTTAGCTTGAACTAGAGTTTCTTAAAGTAGTTCTACGTTTCACCACAACTCATGTTAGTATTTTGTGTCTTGAATGCTCTTTTTAGTTTGTGGCTATTAATTTCCTTATGGCCTCATCAAAAACAGGGAAAATTATGAGGACAAGATATTCCAAATCACTATTTTACTAACAAATGGATGGCTGAAAATGAATTCTACCCAAAAAAAAGAAAATAGAAGCCAAAATCAATCATTTCATCTTATCTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA : ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG : CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG : GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTGTTCACTCTTTCTTAGACATGGTTTTACCAACTTTTGAATCCATAGCAAATTGAATTTTAAAAAAATGAAACATGTTTTCATGAA</gDNA_template>
            <first_frame> T  R  V  T  I  S  K  V  *  N  F  L  H  I  L  S  L  N  *  S  F  L  K  *  F  Y  V  S  P  Q  L  M  L  V  F  C  V  L  N  A  L  F  S  L  W  L  L  I  S  L  W  P  H  Q  K  Q  G  K  L  *  G  Q  D  I  P  N  H  Y  F  T  N  K  W  M  A  E  N  E  F  Y  P  K  K  R  K  *  K  P  K  S  I  I  S  S  Y  L  S  C  T  *  I  V  *  G  K  Y  *  V  R  G  K  K  T  S  W  K  E  R  R  T  M  E  A  L  L  S  S  T  T  L  Q  L  K  P  L  H  P  P  S  S  F  S  S  L  H  S  P  F  S  S  I  S  V  L  R  V  K  G  S  K  K  A  E  T  F  I  Q  R  S  N  F  S  T  V  L  P  L  R  V  S  A  S  S  Q  A  A  A  A  E  T  S  T  S  I  S  I  P  S  E  M  K  A  W  S  Y  T  D  Y  G  S  V  D  V  L  K  L  E  S  N  V  A  V  P  D  I  K  E  D  Q  V  L  I  K  I  V  A  A  A  L  N  P  V  D  F  K  R  R  L  G  K  F  K  A  T  D  S  P  L  P  :  T  V  P  G  Y  D  V  A  G  V  V  V  K  V  G  S  Q  V  K  G  L  K  E  G  D  E  V  Y  G  D  I  H  E  K  A  L  D  G  P  K  Q  F  G  S  L  A  E  Y  T  A  V  E  E  K  L  V  A  L  K  P  K  N  L  S  F  A  E  A  A  A  L  P  L  A  I  E  T  A  Y  E  G  L  E  K  A  G  F  S  S  G  K  S  I  L  V  L  G  G  A  G  G  V  G  S  L  V  I  Q  :  L  A  K  H  V  F  G  A  S  K  V  A  A  T  S  S  T  G  K  L  E  L  L  K  S  L  G  A  D  L  A  I  D  Y  T  K  E  N  F  E  D  L  P  D  K  F  D  V  V  Y  D  S  V   : G  Q  G  E  K  A  V  K  V  V  K  E  G  G  S  V  V  V  L  T  G  A  V  T  P  P  G  F  R  F  V  V  T  S  N  G  E  M  L  K  K  L  N  P  Y  L  E  S  G  K  V  K  P  V  I  D  P  K  G  P  F  S  F  D  K  V  V  D  A  F  S  Y  L  E  T  G  R  A  T  G  K  V  V  I  H  P  I  P  *  K  L  A  L  I  L  Y  N  F  *  Y  I  *  G  K  G  E  V  F  V  P  Q  S  L  L  W  H  V  V  D  E  N  K  M  Y  L  C  *  S  C  W  T  H  K  *  L  L  R  R  I  F  V  F  T  L  S  *  T  W  F  Y  Q  L  L  N  P  *  Q  I  E  F  *  K  N  E  T  C  F  H  E </first_frame>
            <second_frame>  L  E  *  P  F  Q  K  Y  K  I  F  F  I  F  L  A  *  T  R  V  S  *  S  S  S  T  F  H  H  N  S  C  *  Y  F  V  S  *  M  L  F  L  V  C  G  Y  *  F  P  Y  G  L  I  K  N  R  E  N  Y  E  D  K  I  F  Q  I  T  I  L  L  T  N  G  W  L  K  M  N  S  T  Q  K  K  E  N  R  S  Q  N  Q  S  F  H  L  I  Y  H  A  H  K  L  F  E  E  N  T  E  *  G  V  K  K  P  A  G  K  K  E  E  Q  W  K  L  C  Y  L  P  L  L  F  N  S  N  P  F  I  H  P  L  L  S  L  L  F  T  L  H  F  L  L  F  L  F  L  E  *  R  V  A  K  K  L  K  L  L  F  K  E  A  I  F  P  L  F  C  H  L  E  S  L  L  V  L  K  Q  Q  L  L  K  H  P  Q  A  F  L  F  L  L  K  *  K  L  G  V  I  L  I  M  E  V  L  M  F  *  S  W  S  P  M  L  Q  F  L  T  L  R  K  I  K  S  *  L  R  L  L  L  L  L  L  T  L  L  I  L  N  D  G  S  E  N  L  R  P  L  I  L  H  F  Q :   L  C  Q  V  M  M  L  L  V  W  *  *  K  L  V  V  R  *  R  D  *  K  K  G  M  K  Y  M  E  I  Y  M  R  K  H  *  M  D  Q  S  N  L  D  P  *  L  S  T  L  L  L  K  R  N  *  L  L  *  N  P  R  I  L  V  L  R  R  L  L  L  F  L  *  L  L  R  L  L  M  K  V  L  R  K  L  D  F  L  L  A  N  P  F  L  F  W  E  V  L  A  V  L  D  P  *  *  S  S :   L  L  N  M  Y  L  V  L  L  K  *  Q  L  P  L  A  Q  G  S  W  N  S  *  K  A  *  E  L  I  *  L  L  T  T  L  R  R  I  L  K  I  C  L  T  S  L  M  L  F  M  I  Q  L  :  V  R  V  K  R  R  *  R  *  *  R  K  V  G  V  W  *  C  *  Q  G  Q  *  L  H  Q  V  L  D  L  W  *  H  Q  M  E  R  C  *  R  N  *  T  H  T  W  K  V  G  R  *  N  Q  *  *  I  Q  R  D  H  S  H  L  I  R  L  W  M  L  S  L  I  L  K  L  E  E  P  L  G  K  L  L  F  I  P  F  L  E  S  *  L  L  F  C  T  I  S  N  T  F  R  E  K  E  K  F  L  F  L  K  A  Y  C  G  M  W  L  M  K  I  R  C  I  Y  V  D  H  V  G  H  T  N  N  Y  L  G  G  F  L  C  S  L  F  L  R  H  G  F  T  N  F  *  I  H  S  K  L  N  F  K  K  M  K  H  V  F  M   </second_frame>
            <third_frame>   *  S  D  H  F  K  S  I  K  F  S  S  Y  S  *  L  E  L  E  F  L  K  V  V  L  R  F  T  T  T  H  V  S  I  L  C  L  E  C  S  F  *  F  V  A  I  N  F  L  M  A  S  S  K  T  G  K  I  M  R  T  R  Y  S  K  S  L  F  Y  *  Q  M  D  G  *  K  *  I  L  P  K  K  K  K  I  E  A  K  I  N  H  F  I  L  S  I  M  H  I  N  C  L  R  K  I  L  S  E  G  *  K  N  Q  L  E  R  K  K  N  N  G  S  S  V  I  F  H  Y  S  S  T  Q  T  P  S  S  T  L  F  F  L  F  S  S  L  S  I  F  F  Y  F  C  S  *  S  K  G  *  Q  K  S  *  N  F  Y  S  K  K  Q  F  F  H  C  F  A  T  *  S  L  C  *  F  S  S  S  S  C  *  N  I  H  K  H  F  Y  S  F  *  N  E  S  L  E  L  Y  *  L  W  K  C  *  C  F  E  V  G  V  Q  C  C  S  S  *  H  *  G  R  S  S  L  D  *  D  C  C  C  C  S  *  P  C  *  F  *  T  T  A  R  K  I  *  G  H  *  F  S  T  S   : N  C  A  R  L  *  C  C  W  C  G  S  E  S  W  *  S  G  K  G  I  K  R  R  G  *  S  I  W  R  Y  T  *  E  S  I  R  W  T  K  A  I  W  I  L  S  *  V  H  C  C  *  R  E  T  S  C  F  E  T  Q  E  S  *  F  C  G  G  C  C  S  S  S  S  Y  *  D  C  L  *  R  S  *  E  S  W  I  F  F  W  Q  I  H  S  C  F  G  R  C  W  R  C  W  I  P  S  N  P   : A  C  *  T  C  I  W  C  F  *  S  S  S  Y  L  *  H  R  E  V  G  T  P  E  K  L  R  S  *  F  S  Y  *  L  H  *  G  E  F  *  R  S  A  *  Q  V  *  C  C  L  *  F  S  W :   S  G  *  K  G  G  E  G  S  E  G  R  W  E  C  G  S  A  N  R  G  S  N  S  T  R  F  *  I  C  G  D  I  K  W  R  D  V  E  E  T  E  P  I  L  G  K  W  E  G  E  T  S  D  R  S  K  G  T  I  L  I  *  *  G  C  G  C  F  L  L  S  *  N  W  K  S  H  W  E  S  C  Y  S  S  H  S  L  K  V  S  S  Y  F  V  Q  F  L  I  H  L  G  K  R  R  S  F  C  S  S  K  P  I  V  A  C  G  *  *  K  *  D  V  S  M  L  I  M  L  D  T  Q  I  I  T  *  E  D  F  C  V  H  S  F  L  D  M  V  L  P  T  F  E  S  I  A  N  *  I  L  K  K  *  N  M  F  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24187" stop="23732"/>
                    <exon start="22912" stop="22589"/>
                    <exon start="22076" stop="21917"/>
                    <exon start="21427" stop="21162"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRGKKTSWKERRTMEALLSSTTLQLKPLHPPSSFSSLHSPFSSISVLRVKGSKKAETFIQRSNFSTVLPLRVSASSQAAAAETSTSISIPSEMKAWSYTDYGSVDVLKLESNVAVPDIKEDQVLIKIVAAALNPVDFKRRLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKGLKEGDEVYGDIHEKALDGPKQFGSLAEYTAVEEKLVALKPKNLSFAEAAALPLAIETAYEGLEKAGFSSGKSILVLGGAGGVGSLVIQLAKHVFGASKVAATSSTGKLELLKSLGADLAIDYTKENFEDLPDKFDVVYDSVGQGEKAVKVVKEGGSVVVLTGAVTPPGFRFVVTSNGEMLKKLNPYLESGKVKPVIDPKGPFSFDKVVDAFSYLETGRATGKVVIHPIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24508" e_stop="23732"/>
            <exon e_start="22912" e_stop="22825"/>
            <exon e_start="21965" e_stop="21917"/>
            <exon e_start="21427" e_stop="20922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="24508" e_stop="23732" e_length="777"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22912" e_stop="22825" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22824" i_stop="21966" i_length="859"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21965" e_stop="21917" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.970">
            <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21427" e_stop="20922" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24508" stop="23732"/>
              <exon start="22912" stop="22848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24210" stop="23732"/>
              <exon start="22912" stop="22861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24205" stop="23732"/>
              <exon start="22912" stop="22825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24205" stop="23732"/>
              <exon start="22912" stop="22837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24197" stop="23870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24176" stop="23732"/>
              <exon start="22912" stop="22894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24174" stop="23732"/>
              <exon start="22912" stop="22884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24162" stop="23732"/>
              <exon start="22912" stop="22886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24162" stop="23738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24160" stop="23736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24143" stop="23732"/>
              <exon start="22912" stop="22895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22867" stop="22825"/>
              <exon start="21965" stop="21917"/>
              <exon start="21427" stop="21017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21948" stop="21917"/>
              <exon start="21427" stop="20993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253309" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21390" stop="21053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21338" stop="20922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21274" stop="21049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221507" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAGAGTGACCATTTCAAAAGTATAAAATTTTCTTCATATTCTTAGCTTGAACTAGAGTTTCTTAAAGTAGTTCTACGTTTCACCACAACTCATGTTAGTATTTTGTGTCTTGAATGCTCTTTTTAGTTTGTGGCTATTAATTTCCTTATGGCCTCATCAAAAACAGGGAAAATTATGAGGACAAGATATTCCAAATCACTATTTTACTAACAAATGGATGGCTGAAAATGAATTCTACCCAAAAAAAAGAAAATAGAAGCCAAAATCAATCATTTCATCTTATCTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCTGCTAGTTCTCAAGCAGCAGCTGCTGAAACATCCACAAGCATTTCTATTCCTTCTGAAATGAAAGCTTGGAGTTATACTGATTATGGAAGTGTTGATGTTTTGAAGTTGGAGTCCAATGTTGCAGTTCCTGACATTAAGGAAGATCAAGTCTTGATTAAGATTGTTGCTGCTGCTCTTAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA : ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAG : AATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG : GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTGTTCACTCTTTCTTAGACATGGTTTTACCAACTTTTGAATCCATAGCAAATTGAATTTTAAAAAAATGAAACATGTTTTCATGAA</gDNA_template>
            <first_frame> T  R  V  T  I  S  K  V  *  N  F  L  H  I  L  S  L  N  *  S  F  L  K  *  F  Y  V  S  P  Q  L  M  L  V  F  C  V  L  N  A  L  F  S  L  W  L  L  I  S  L  W  P  H  Q  K  Q  G  K  L  *  G  Q  D  I  P  N  H  Y  F  T  N  K  W  M  A  E  N  E  F  Y  P  K  K  R  K  *  K  P  K  S  I  I  S  S  Y  L  S  C  T  *  I  V  *  G  K  Y  *  V  R  G  K  K  T  S  W  K  E  R  R  T  M  E  A  L  L  S  S  T  T  L  Q  L  K  P  L  H  P  P  S  S  F  S  S  L  H  S  P  F  S  S  I  S  V  L  R  V  K  G  S  K  K  A  E  T  F  I  Q  R  S  N  F  S  T  V  L  P  L  R  V  S  A  S  S  Q  A  A  A  A  E  T  S  T  S  I  S  I  P  S  E  M  K  A  W  S  Y  T  D  Y  G  S  V  D  V  L  K  L  E  S  N  V  A  V  P  D  I  K  E  D  Q  V  L  I  K  I  V  A  A  A  L  N  P  V  D  F  K  R  R  L  G  K  F  K  A  T  D  S  P  L  P  :  T  V  P  G  Y  D  V  A  G  V  V  V  K  V  G  S  Q  V  K  G  L  K  E  G  D  E  V  Y  G   : E  F  *  R  S  A  *  Q  V  *  C  C  L  *  F  S  W :   S  G  *  K  G  G  E  G  S  E  G  R  W  E  C  G  S  A  N  R  G  S  N  S  T  R  F  *  I  C  G  D  I  K  W  R  D  V  E  E  T  E  P  I  L  G  K  W  E  G  E  T  S  D  R  S  K  G  T  I  L  I  *  *  G  C  G  C  F  L  L  S  *  N  W  K  S  H  W  E  S  C  Y  S  S  H  S  L  K  V  S  S  Y  F  V  Q  F  L  I  H  L  G  K  R  R  S  F  C  S  S  K  P  I  V  A  C  G  *  *  K  *  D  V  S  M  L  I  M  L  D  T  Q  I  I  T  *  E  D  F  C  V  H  S  F  L  D  M  V  L  P  T  F  E  S  I  A  N  *  I  L  K  K  *  N  M  F  S  *  </first_frame>
            <second_frame>  L  E  *  P  F  Q  K  Y  K  I  F  F  I  F  L  A  *  T  R  V  S  *  S  S  S  T  F  H  H  N  S  C  *  Y  F  V  S  *  M  L  F  L  V  C  G  Y  *  F  P  Y  G  L  I  K  N  R  E  N  Y  E  D  K  I  F  Q  I  T  I  L  L  T  N  G  W  L  K  M  N  S  T  Q  K  K  E  N  R  S  Q  N  Q  S  F  H  L  I  Y  H  A  H  K  L  F  E  E  N  T  E  *  G  V  K  K  P  A  G  K  K  E  E  Q  W  K  L  C  Y  L  P  L  L  F  N  S  N  P  F  I  H  P  L  L  S  L  L  F  T  L  H  F  L  L  F  L  F  L  E  *  R  V  A  K  K  L  K  L  L  F  K  E  A  I  F  P  L  F  C  H  L  E  S  L  L  V  L  K  Q  Q  L  L  K  H  P  Q  A  F  L  F  L  L  K  *  K  L  G  V  I  L  I  M  E  V  L  M  F  *  S  W  S  P  M  L  Q  F  L  T  L  R  K  I  K  S  *  L  R  L  L  L  L  L  L  T  L  L  I  L  N  D  G  S  E  N  L  R  P  L  I  L  H  F  Q :   L  C  Q  V  M  M  L  L  V  W  *  *  K  L  V  V  R  *  R  D  *  K  K  G  M  K  Y  M  E  :  N  F  E  D  L  P  D  K  F  D  V  V  Y  D  S  V   : G  Q  G  E  K  A  V  K  V  V  K  E  G  G  S  V  V  V  L  T  G  A  V  T  P  P  G  F  R  F  V  V  T  S  N  G  E  M  L  K  K  L  N  P  Y  L  E  S  G  K  V  K  P  V  I  D  P  K  G  P  F  S  F  D  K  V  V  D  A  F  S  Y  L  E  T  G  R  A  T  G  K  V  V  I  H  P  I  P  *  K  L  A  L  I  L  Y  N  F  *  Y  I  *  G  K  G  E  V  F  V  P  Q  S  L  L  W  H  V  V  D  E  N  K  M  Y  L  C  *  S  C  W  T  H  K  *  L  L  R  R  I  F  V  F  T  L  S  *  T  W  F  Y  Q  L  L  N  P  *  Q  I  E  F  *  K  N  E  T  C  F  H  E </second_frame>
            <third_frame>   *  S  D  H  F  K  S  I  K  F  S  S  Y  S  *  L  E  L  E  F  L  K  V  V  L  R  F  T  T  T  H  V  S  I  L  C  L  E  C  S  F  *  F  V  A  I  N  F  L  M  A  S  S  K  T  G  K  I  M  R  T  R  Y  S  K  S  L  F  Y  *  Q  M  D  G  *  K  *  I  L  P  K  K  K  K  I  E  A  K  I  N  H  F  I  L  S  I  M  H  I  N  C  L  R  K  I  L  S  E  G  *  K  N  Q  L  E  R  K  K  N  N  G  S  S  V  I  F  H  Y  S  S  T  Q  T  P  S  S  T  L  F  F  L  F  S  S  L  S  I  F  F  Y  F  C  S  *  S  K  G  *  Q  K  S  *  N  F  Y  S  K  K  Q  F  F  H  C  F  A  T  *  S  L  C  *  F  S  S  S  S  C  *  N  I  H  K  H  F  Y  S  F  *  N  E  S  L  E  L  Y  *  L  W  K  C  *  C  F  E  V  G  V  Q  C  C  S  S  *  H  *  G  R  S  S  L  D  *  D  C  C  C  C  S  *  P  C  *  F  *  T  T  A  R  K  I  *  G  H  *  F  S  T  S   : N  C  A  R  L  *  C  C  W  C  G  S  E  S  W  *  S  G  K  G  I  K  R  R  G  *  S  I  W  R :   I  L  K  I  C  L  T  S  L  M  L  F  M  I  Q  L  :  V  R  V  K  R  R  *  R  *  *  R  K  V  G  V  W  *  C  *  Q  G  Q  *  L  H  Q  V  L  D  L  W  *  H  Q  M  E  R  C  *  R  N  *  T  H  T  W  K  V  G  R  *  N  Q  *  *  I  Q  R  D  H  S  H  L  I  R  L  W  M  L  S  L  I  L  K  L  E  E  P  L  G  K  L  L  F  I  P  F  L  E  S  *  L  L  F  C  T  I  S  N  T  F  R  E  K  E  K  F  L  F  L  K  A  Y  C  G  M  W  L  M  K  I  R  C  I  Y  V  D  H  V  G  H  T  N  N  Y  L  G  G  F  L  C  S  L  F  L  R  H  G  F  T  N  F  *  I  H  S  K  L  N  F  K  K  M  K  H  V  F  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24187" stop="23732"/>
                    <exon start="22912" stop="22825"/>
                    <exon start="21965" stop="21958"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRGKKTSWKERRTMEALLSSTTLQLKPLHPPSSFSSLHSPFSSISVLRVKGSKKAETFIQRSNFSTVLPLRVSASSQAAAAETSTSISIPSEMKAWSYTDYGSVDVLKLESNVAVPDIKEDQVLIKIVAAALNPVDFKRRLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKGLKEGDEVYGEF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22848" stop="22825"/>
                    <exon start="21965" stop="21917"/>
                    <exon start="21427" stop="21162"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKGMKYMENFEDLPDKFDVVYDSVGQGEKAVKVVKEGGSVVVLTGAVTPPGFRFVVTSNGEMLKKLNPYLESGKVKPVIDPKGPFSFDKVVDAFSYLETGRATGKVVIHPIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="24235" e_stop="23969"/>
            <exon e_start="23792" e_stop="23732"/>
            <exon e_start="22912" e_stop="22589"/>
            <exon e_start="22076" e_stop="21917"/>
            <exon e_start="21427" e_stop="20922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="24235" e_stop="23969" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23968" i_stop="23793" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23792" e_stop="23732" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23731" i_stop="22913" i_length="819"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22912" e_stop="22589" e_length="324"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="22588" i_stop="22077" i_length="512"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22076" e_stop="21917" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.970">
            <gDNA_intron_boundary i_start="21916" i_stop="21428" i_length="489"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21427" e_stop="20922" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24235" stop="23969"/>
              <exon start="23792" stop="23732"/>
              <exon start="22912" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24227" stop="23969"/>
              <exon start="23792" stop="23732"/>
              <exon start="22912" stop="22766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23760" stop="23732"/>
              <exon start="22912" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22906" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22788" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22775" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22703" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="20991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22640" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22614" stop="22589"/>
              <exon start="22076" stop="21917"/>
              <exon start="21427" stop="21053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21948" stop="21917"/>
              <exon start="21427" stop="20993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253309" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21390" stop="21053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21338" stop="20922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21274" stop="21049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221507" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCATCTTATCTATCATGCACATAAATTGTTTGAGGAAAATACTGAGTGAGGGGTAAAAAAACCAGCTGGAAAGAAAGAAGAACAATGGAAGCTCTGTTATCTTCCACTACTCTTCAACTCAAACCCCTTCATCCACCCTCTTCTTTCTCTTCTCTTCACTCTCCATTTTCTTCTATTTCTGTTCTTAGAGTAAAGGGTAGCAAAAAAGCTGAAACTTTTATTCAAAGAAGCAATTTTTCCACTGTTTTGCCACTTAGAGTCTCT : TAACCCTGTTGATTTTAAACGACGGCTCGGAAAATTTAAGGCCACTGATTCTCCACTTCCA : ACTGTGCCAGGTTATGATGTTGCTGGTGTGGTAGTGAAAGTTGGTAGTCAGGTAAAGGGATTAAAAGAAGGGGATGAAGTATATGGAGATATACATGAGAAAGCATTAGATGGACCAAAGCAATTTGGATCCTTAGCTGAGTACACTGCTGTTGAAGAGAAACTAGTTGCTTTGAAACCCAAGAATCTTAGTTTTGCGGAGGCTGCTGCTCTTCCTCTAGCTATTGAGACTGCTTATGAAGGTCTTGAGAAAGCTGGATTTTCTTCTGGCAAATCCATTCTTGTTTTGGGAGGTGCTGGCGGTGTTGGATCCCTAGTAATCCAG : CTTGCTAAACATGTATTTGGTGCTTCTAAAGTAGCAGCTACCTCTAGCACAGGGAAGTTGGAACTCCTGAAAAGCTTAGGAGCTGATTTAGCTATTGACTACACTAAGGAGAATTTTGAAGATCTGCCTGACAAGTTTGATGTTGTTTATGATTCAGTTG : GTCAGGGTGAAAAGGCGGTGAAGGTAGTGAAGGAAGGTGGGAGTGTGGTAGTGCTAACAGGGGCAGTAACTCCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAAACTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAAGGGACCATTCTCATTTGATAAGGTTGTGGATGCTTTCTCTTATCTTGAAACTGGAAGAGCCACTGGGAAAGTTGTTATTCATCCCATTCCTTGAAAGTTAGCTCTTATTTTGTACAATTTCTAATACATTTAGGGAAAAGGAGAAGTTTTTGTTCCTCAAAGCCTATTGTGGCATGTGGTTGATGAAAATAAGATGTATCTATGTTGATCATGTTGGACACACAAATAATTACTTAGGAGGATTTTTGTGTTCACTCTTTCTTAGACATGGTTTTACCAACTTTTGAATCCATAGCAAATTGAATTTTAAAAAAATGAAACATGTTTTCATGAA</gDNA_template>
            <first_frame> I  S  S  Y  L  S  C  T  *  I  V  *  G  K  Y  *  V  R  G  K  K  T  S  W  K  E  R  R  T  M  E  A  L  L  S  S  T  T  L  Q  L  K  P  L  H  P  P  S  S  F  S  S  L  H  S  P  F  S  S  I  S  V  L  R  V  K  G  S  K  K  A  E  T  F  I  Q  R  S  N  F  S  T  V  L  P  L  R  V  S  :  *  P  C  *  F  *  T  T  A  R  K  I  *  G  H  *  F  S  T  S   : N  C  A  R  L  *  C  C  W  C  G  S  E  S  W  *  S  G  K  G  I  K  R  R  G  *  S  I  W  R  Y  T  *  E  S  I  R  W  T  K  A  I  W  I  L  S  *  V  H  C  C  *  R  E  T  S  C  F  E  T  Q  E  S  *  F  C  G  G  C  C  S  S  S  S  Y  *  D  C  L  *  R  S  *  E  S  W  I  F  F  W  Q  I  H  S  C  F  G  R  C  W  R  C  W  I  P  S  N  P   : A  C  *  T  C  I  W  C  F  *  S  S  S  Y  L  *  H  R  E  V  G  T  P  E  K  L  R  S  *  F  S  Y  *  L  H  *  G  E  F  *  R  S  A  *  Q  V  *  C  C  L  *  F  S  W :   S  G  *  K  G  G  E  G  S  E  G  R  W  E  C  G  S  A  N  R  G  S  N  S  T  R  F  *  I  C  G  D  I  K  W  R  D  V  E  E  T  E  P  I  L  G  K  W  E  G  E  T  S  D  R  S  K  G  T  I  L  I  *  *  G  C  G  C  F  L  L  S  *  N  W  K  S  H  W  E  S  C  Y  S  S  H  S  L  K  V  S  S  Y  F  V  Q  F  L  I  H  L  G  K  R  R  S  F  C  S  S  K  P  I  V  A  C  G  *  *  K  *  D  V  S  M  L  I  M  L  D  T  Q  I  I  T  *  E  D  F  C  V  H  S  F  L  D  M  V  L  P  T  F  E  S  I  A  N  *  I  L  K  K  *  N  M  F  S  *  </first_frame>
            <second_frame>  F  H  L  I  Y  H  A  H  K  L  F  E  E  N  T  E  *  G  V  K  K  P  A  G  K  K  E  E  Q  W  K  L  C  Y  L  P  L  L  F  N  S  N  P  F  I  H  P  L  L  S  L  L  F  T  L  H  F  L  L  F  L  F  L  E  *  R  V  A  K  K  L  K  L  L  F  K  E  A  I  F  P  L  F  C  H  L  E  S  L :   N  P  V  D  F  K  R  R  L  G  K  F  K  A  T  D  S  P  L  P  :  T  V  P  G  Y  D  V  A  G  V  V  V  K  V  G  S  Q  V  K  G  L  K  E  G  D  E  V  Y  G  D  I  H  E  K  A  L  D  G  P  K  Q  F  G  S  L  A  E  Y  T  A  V  E  E  K  L  V  A  L  K  P  K  N  L  S  F  A  E  A  A  A  L  P  L  A  I  E  T  A  Y  E  G  L  E  K  A  G  F  S  S  G  K  S  I  L  V  L  G  G  A  G  G  V  G  S  L  V  I  Q  :  L  A  K  H  V  F  G  A  S  K  V  A  A  T  S  S  T  G  K  L  E  L  L  K  S  L  G  A  D  L  A  I  D  Y  T  K  E  N  F  E  D  L  P  D  K  F  D  V  V  Y  D  S  V   : G  Q  G  E  K  A  V  K  V  V  K  E  G  G  S  V  V  V  L  T  G  A  V  T  P  P  G  F  R  F  V  V  T  S  N  G  E  M  L  K  K  L  N  P  Y  L  E  S  G  K  V  K  P  V  I  D  P  K  G  P  F  S  F  D  K  V  V  D  A  F  S  Y  L  E  T  G  R  A  T  G  K  V  V  I  H  P  I  P  *  K  L  A  L  I  L  Y  N  F  *  Y  I  *  G  K  G  E  V  F  V  P  Q  S  L  L  W  H  V  V  D  E  N  K  M  Y  L  C  *  S  C  W  T  H  K  *  L  L  R  R  I  F  V  F  T  L  S  *  T  W  F  Y  Q  L  L  N  P  *  Q  I  E  F  *  K  N  E  T  C  F  H  E </second_frame>
            <third_frame>   F  I  L  S  I  M  H  I  N  C  L  R  K  I  L  S  E  G  *  K  N  Q  L  E  R  K  K  N  N  G  S  S  V  I  F  H  Y  S  S  T  Q  T  P  S  S  T  L  F  F  L  F  S  S  L  S  I  F  F  Y  F  C  S  *  S  K  G  *  Q  K  S  *  N  F  Y  S  K  K  Q  F  F  H  C  F  A  T  *  S  L   : L  T  L  L  I  L  N  D  G  S  E  N  L  R  P  L  I  L  H  F  Q :   L  C  Q  V  M  M  L  L  V  W  *  *  K  L  V  V  R  *  R  D  *  K  K  G  M  K  Y  M  E  I  Y  M  R  K  H  *  M  D  Q  S  N  L  D  P  *  L  S  T  L  L  L  K  R  N  *  L  L  *  N  P  R  I  L  V  L  R  R  L  L  L  F  L  *  L  L  R  L  L  M  K  V  L  R  K  L  D  F  L  L  A  N  P  F  L  F  W  E  V  L  A  V  L  D  P  *  *  S  S :   L  L  N  M  Y  L  V  L  L  K  *  Q  L  P  L  A  Q  G  S  W  N  S  *  K  A  *  E  L  I  *  L  L  T  T  L  R  R  I  L  K  I  C  L  T  S  L  M  L  F  M  I  Q  L  :  V  R  V  K  R  R  *  R  *  *  R  K  V  G  V  W  *  C  *  Q  G  Q  *  L  H  Q  V  L  D  L  W  *  H  Q  M  E  R  C  *  R  N  *  T  H  T  W  K  V  G  R  *  N  Q  *  *  I  Q  R  D  H  S  H  L  I  R  L  W  M  L  S  L  I  L  K  L  E  E  P  L  G  K  L  L  F  I  P  F  L  E  S  *  L  L  F  C  T  I  S  N  T  F  R  E  K  E  K  F  L  F  L  K  A  Y  C  G  M  W  L  M  K  I  R  C  I  Y  V  D  H  V  G  H  T  N  N  Y  L  G  G  F  L  C  S  L  F  L  R  H  G  F  T  N  F  *  I  H  S  K  L  N  F  K  K  M  K  H  V  F  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24039" stop="23969"/>
                    <exon start="23792" stop="23732"/>
                    <exon start="22912" stop="22589"/>
                    <exon start="22076" stop="21917"/>
                    <exon start="21427" stop="21162"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAKKLKLLFKEAIFPLFCHLESLNPVDFKRRLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKGLKEGDEVYGDIHEKALDGPKQFGSLAEYTAVEEKLVALKPKNLSFAEAAALPLAIETAYEGLEKAGFSSGKSILVLGGAGGVGSLVIQLAKHVFGASKVAATSSTGKLELLKSLGADLAIDYTKENFEDLPDKFDVVYDSVGQGEKAVKVVKEGGSVVVLTGAVTPPGFRFVVTSNGEMLKKLNPYLESGKVKPVIDPKGPFSFDKVVDAFSYLETGRATGKVVIHPIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="21021" PGL_stop="21385"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21021" e_stop="21385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="21021" e_stop="21385" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21021" stop="21320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21109" stop="21385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253304" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTAATTATTTGTGTGTCCAACATGATCAACATAGATACATCTTATTTTCATCAACCACATGCCACAATAGGCTTTGAGGAACAAAAACTTCTCCTTTTCCCTAAATGTATTAGAAATTGTACAAAATAAGAGCTAACTTTCAAGGAATGGGATGAATAACAACTTTCCCAGTGGCTCTTCCAGTTTCAAGATAAGAGAAAGCATCCACAACCTTATCAAATGAGAATGGTCCCTTTGGATCTATCACTGGTTTCACCTTCCCACTTTCCAAGTATGGGTTCAGTTTCTTCAACATCTCTCCATTTGATGTCACCACAAATCTAAAACCTGGTGGAGTTACTGCCCCTGTTAGCACTACCACAC</gDNA_template>
            <first_frame> K  *  L  F  V  C  P  T  *  S  T  *  I  H  L  I  F  I  N  H  M  P  Q  *  A  L  R  N  K  N  F  S  F  S  L  N  V  L  E  I  V  Q  N  K  S  *  L  S  R  N  G  M  N  N  N  F  P  S  G  S  S  S  F  K  I  R  E  S  I  H  N  L  I  K  *  E  W  S  L  W  I  Y  H  W  F  H  L  P  T  F  Q  V  W  V  Q  F  L  Q  H  L  S  I  *  C  H  H  K  S  K  T  W  W  S  Y  C  P  C  *  H  Y  H   </first_frame>
            <second_frame>  S  N  Y  L  C  V  Q  H  D  Q  H  R  Y  I  L  F  S  S  T  T  C  H  N  R  L  *  G  T  K  T  S  P  F  P  *  M  Y  *  K  L  Y  K  I  R  A  N  F  Q  G  M  G  *  I  T  T  F  P  V  A  L  P  V  S  R  *  E  K  A  S  T  T  L  S  N  E  N  G  P  F  G  S  I  T  G  F  T  F  P  L  S  K  Y  G  F  S  F  F  N  I  S  P  F  D  V  T  T  N  L  K  P  G  G  V  T  A  P  V  S  T  T  T  </second_frame>
            <third_frame>   V  I  I  C  V  S  N  M  I  N  I  D  T  S  Y  F  H  Q  P  H  A  T  I  G  F  E  E  Q  K  L  L  L  F  P  K  C  I  R  N  C  T  K  *  E  L  T  F  K  E  W  D  E  *  Q  L  S  Q  W  L  F  Q  F  Q  D  K  R  K  H  P  Q  P  Y  Q  M  R  M  V  P  L  D  L  S  L  V  S  P  S  H  F  P  S  M  G  S  V  S  S  T  S  L  H  L  M  S  P  Q  I  *  N  L  V  E  L  L  P  L  L  A  L  P  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0086I08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="23742" PGL_stop="24160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23742" e_stop="24160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="23742" e_stop="24160" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23742" stop="24160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23794" stop="24160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCAGTGGCCTTAAATTTTCCGAGCCGTCGTTTAAAATCAACAGGGTTAAGAGCAGCAGCAACAATCTTAATCAAGACTTGATCTTCCTTAATGTCAGGAACTGCAACATTGGACTCCAACTTCAAAACATCAACACTTCCATAATCAGTATAACTCCAAGCTTTCATTTCAGAAGGAATAGAAATGCTTGTGGATGTTTCAGCAGCTGCTGCTTGAGAACTAGCAGAGACTCTAAGTGGCAAAACAGTGGAAAAATTGCTTCTTTGAATAAAAGTTTCAGCTTTTTTGCTACCCTTTACTCTAAGAACAGAAATAGAAGAAAATGGAGAGTGAAGAGAAGAGAAAGAAGAGGGTGGATGAAGGGGTTTGAGTTGAAGAGTAGTGGAAGATAACAGAGCTTCCATTGTTCTTCTTTC</gDNA_template>
            <first_frame> E  S  V  A  L  N  F  P  S  R  R  L  K  S  T  G  L  R  A  A  A  T  I  L  I  K  T  *  S  S  L  M  S  G  T  A  T  L  D  S  N  F  K  T  S  T  L  P  *  S  V  *  L  Q  A  F  I  S  E  G  I  E  M  L  V  D  V  S  A  A  A  A  *  E  L  A  E  T  L  S  G  K  T  V  E  K  L  L  L  *  I  K  V  S  A  F  L  L  P  F  T  L  R  T  E  I  E  E  N  G  E  *  R  E  E  K  E  E  G  G  *  R  G  L  S  *  R  V  V  E  D  N  R  A  S  I  V  L  L   </first_frame>
            <second_frame>  N  Q  W  P  *  I  F  R  A  V  V  *  N  Q  Q  G  *  E  Q  Q  Q  Q  S  *  S  R  L  D  L  P  *  C  Q  E  L  Q  H  W  T  P  T  S  K  H  Q  H  F  H  N  Q  Y  N  S  K  L  S  F  Q  K  E  *  K  C  L  W  M  F  Q  Q  L  L  L  E  N  *  Q  R  L  *  V  A  K  Q  W  K  N  C  F  F  E  *  K  F  Q  L  F  C  Y  P  L  L  *  E  Q  K  *  K  K  M  E  S  E  E  K  R  K  K  R  V  D  E  G  V  *  V  E  E  *  W  K  I  T  E  L  P  L  F  F  F  </second_frame>
            <third_frame>   I  S  G  L  K  F  S  E  P  S  F  K  I  N  R  V  K  S  S  S  N  N  L  N  Q  D  L  I  F  L  N  V  R  N  C  N  I  G  L  Q  L  Q  N  I  N  T  S  I  I  S  I  T  P  S  F  H  F  R  R  N  R  N  A  C  G  C  F  S  S  C  C  L  R  T  S  R  D  S  K  W  Q  N  S  G  K  I  A  S  L  N  K  S  F  S  F  F  A  T  L  Y  S  K  N  R  N  R  R  K  W  R  V  K  R  R  E  R  R  G  W  M  K  G  F  E  L  K  S  S  G  R  *  Q  S  F  H  C  S  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23744" stop="24136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISGLKFSEPSFKINRVKSSSNNLNQDLIFLNVRNCNIGLQLQNINTSIISITPSFHFRRNRNACGCFSSCCLRTSRDSKWQNSGKIASLNKSFSFFATLYSKNRNRRKWRVKRRERRGWMKGFELKSSGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="38018" PGL_stop="29219"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38018" e_stop="37886"/>
            <exon e_start="31427" e_stop="30948"/>
            <exon e_start="30847" e_stop="30362"/>
            <exon e_start="30198" e_stop="29219"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.857" e_score="0.977"/>
          <exon-intron don_prob="0.898" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.930" e_score="0.998"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="38018" e_stop="37886" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.857">
            <gDNA_intron_boundary i_start="37885" i_stop="31428" i_length="6458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31427" e_stop="30948" e_length="480"/>
          </exon>
          <intron i_serial="2" don_prob="0.898" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30947" i_stop="30848" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="30847" e_stop="30362" e_length="486"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.930">
            <gDNA_intron_boundary i_start="30361" i_stop="30199" i_length="163"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="30198" e_stop="29219" e_length="980"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38018" stop="37886"/>
              <exon start="31427" stop="30948"/>
              <exon start="30847" stop="30362"/>
              <exon start="30198" stop="29219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37923" stop="37886"/>
              <exon start="31427" stop="31143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30801" stop="30362"/>
              <exon start="30198" stop="30111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30633" stop="30362"/>
              <exon start="30198" stop="30046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTACAAAACTTTGTTATTAACATCAAAAAAAAAAACACAAAGAGACAATGGCAGGGGAAAATTGTCATGATGTGATCAATCTACTTGGTTCTTCAGATCGTGACTTTCTTATTCGCAACAATGGTGACAAG : GTTAAGCTTGATACTTTAAAGGAGAAAAAAATTGGTTTCTACTTTTCAGCATCATGGTGTGGTCCGTGCAAACATTTCACCCCAAATTTGGTAGAGGCGTACAATGCTCTCCTACCAAAAGGAGACTTTGAAGTTGTTTTCCTTACTGCTGATATGGATGATGAATCTTTTAAGGAGTACTTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGTTAGGGGAATACCCCACTTAGTGATCCTTGATGCTAGTGGGAAGGTAGTGACAAATAGCGGGGTTGAAATCATTGTTGAGCATGGGGTGGAGGGCTACCCATTCACTCAAGAACGGCTAAACGAACTTAAAGAGCAAGAAGAAACCGCTAAAAGAGAACAGTCTTTGAAATCTATCTTGGAGTCACAGTCAAGAAACTACGTAATTGCGGCTGATGGAAGGAAG : GTACCTGTTGCTGAGCTTGAAGGCAAGATTATAGGCCTATATATGTCAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTAAGAAAGAGTTTTCGAGAATGCCTTGGTTTTCACTTCCCTTAAAAGACAAGACCTGCAAGAAGCTGGCCAGGTACTTTGAGCTCTCTACCCTTCCTACCCTAGTCATCATTGGAACAGATGGGAAGACTCTTCATTCTAATGTTGCTGAAGCCGTCGAGGAGCATGGTATCCTGGCATATCCTTTTAGCCACGAGAAGTTTGCTGAACTTGAGCAGATACAGAAAGCTAAACTGGAAGCACAAACGTTGGAGTCGATTTTGGTTACTAGAGATCGTGATTTCGTCATTGGAAAAGATGGTGAAAAG : ATCCTCGTGTCTGACCTCGTAGGGAAGACTATTCTCCTTTACTTCTCAGCACATTGGTGTCCTCCATGCCGTGCTTTTACACCACAGCTTAAAGAGGCATATGAGACGATAAAATCCAAAAATGGTCCATTGGAAGTGATATTCTTATCTAGCGACCAAGATCAAGCCTCATTTGATGAGTATTTTGCTACAATGCCATGGCTGGCTCTTCCGTTTGGTGATGAGAGGAAGACATATTTGAGTCGCCTATTCAAAGTTCGTGGCATACCAACATTGGTTGCTGTAGGGCCATCAGGCAAGACTGTTACAACTGACGCCAGAAGTTTGATCATGTGTCATGGTGCTAAGGCTTTTCCATTCACCGAGGAGCGTATGGAGGAGATTGAAGCAGAAACTGCAGAAATGGCAAAGGGGTGGCCTGAGAAAATTATGCACAAACTTCACGAGCATGAACTTCTGCTTTCTAAGCGTTCTGCTTACAATTGTGATGTATGCGAGGAGCTGGGACAGATATGGTCATTCTATTGTGAAGAATGTGACTTTGATATGCACCCAAAATGTGCTCTAGAAGAGGAAAAGGAAAGCAACATGGATATCGAGGAAGATCAAAAGGATCATATGCACCCAAATTATGCTCTAGAAGAGGAAAAGGAAAGCAACATGGATATCGAGGAAGATCAAAAGGATCAAGGCAAAGAGGAACAGAAAACAAATGAGGGATGGATTTGTGATGGTGAAGTTTGTTTCAAAGGTTAATTTGTCATTATGTCTTGTTGACTATGAGGCATTTGCTGAGCAGCATATTTGTGGGTTTTGAAATTGTTCTTTGTGAGACACTTCTATCCTAAAATCTTGTCACTTCTATGCAATACTAGTTTTATTAAACGTTGGACCTGTATTTGATCCTGATGGTACTGTCTATCTCCATGTTTATCGTCTCTATGAGTCAAGCTATTTGTGAAAGATAATGATATTGATTT</gDNA_template>
            <first_frame> H  Y  K  T  L  L  L  T  S  K  K  K  T  Q  R  D  N  G  R  G  K  L  S  *  C  D  Q  S  T  W  F  F  R  S  *  L  S  Y  S  Q  Q  W  *  Q   : G  *  A  *  Y  F  K  G  E  K  N  W  F  L  L  F  S  I  M  V  W  S  V  Q  T  F  H  P  K  F  G  R  G  V  Q  C  S  P  T  K  R  R  L  *  S  C  F  P  Y  C  *  Y  G  *  *  I  F  *  G  V  L  F  *  N  A  L  A  R  C  P  I  L  *  F  *  N  T  *  T  F  E  *  I  V  C  C  *  G  N  T  P  L  S  D  P  *  C  *  W  E  G  S  D  K  *  R  G  *  N  H  C  *  A  W  G  G  G  L  P  I  H  S  R  T  A  K  R  T  *  R  A  R  R  N  R  *  K  R  T  V  F  E  I  Y  L  G  V  T  V  K  K  L  R  N  C  G  *  W  K  E   : G  T  C  C  *  A  *  R  Q  D  Y  R  P  I  Y  V  N  G  F  F  *  R  M  *  I  L  Y  W  E  A  D  R  D  V  *  Q  V  E  V  S  G  R  K  L  *  D  C  H  D  S  S  *  R  *  R  *  *  *  I  F  *  E  R  V  F  E  N  A  L  V  F  T  S  L  K  R  Q  D  L  Q  E  A  G  Q  V  L  *  A  L  Y  P  S  Y  P  S  H  H  W  N  R  W  E  D  S  S  F  *  C  C  *  S  R  R  G  A  W  Y  P  G  I  S  F  *  P  R  E  V  C  *  T  *  A  D  T  E  S  *  T  G  S  T  N  V  G  V  D  F  G  Y  *  R  S  *  F  R  H  W  K  R  W  *  K   : D  P  R  V  *  P  R  R  E  D  Y  S  P  L  L  L  S  T  L  V  S  S  M  P  C  F  Y  T  T  A  *  R  G  I  *  D  D  K  I  Q  K  W  S  I  G  S  D  I  L  I  *  R  P  R  S  S  L  I  *  *  V  F  C  Y  N  A  M  A  G  S  S  V  W  *  *  E  E  D  I  F  E  S  P  I  Q  S  S  W  H  T  N  I  G  C  C  R  A  I  R  Q  D  C  Y  N  *  R  Q  K  F  D  H  V  S  W  C  *  G  F  S  I  H  R  G  A  Y  G  G  D  *  S  R  N  C  R  N  G  K  G  V  A  *  E  N  Y  A  Q  T  S  R  A  *  T  S  A  F  *  A  F  C  L  Q  L  *  C  M  R  G  A  G  T  D  M  V  I  L  L  *  R  M  *  L  *  Y  A  P  K  M  C  S  R  R  G  K  G  K  Q  H  G  Y  R  G  R  S  K  G  S  Y  A  P  K  L  C  S  R  R  G  K  G  K  Q  H  G  Y  R  G  R  S  K  G  S  R  Q  R  G  T  E  N  K  *  G  M  D  L  *  W  *  S  L  F  Q  R  L  I  C  H  Y  V  L  L  T  M  R  H  L  L  S  S  I  F  V  G  F  E  I  V  L  C  E  T  L  L  S  *  N  L  V  T  S  M  Q  Y  *  F  Y  *  T  L  D  L  Y  L  I  L  M  V  L  S  I  S  M  F  I  V  S  M  S  Q  A  I  C  E  R  *  *  Y  *  F </first_frame>
            <second_frame>  T  T  K  L  C  Y  *  H  Q  K  K  K  H  K  E  T  M  A  G  E  N  C  H  D  V  I  N  L  L  G  S  S  D  R  D  F  L  I  R  N  N  G  D  K  :  V  K  L  D  T  L  K  E  K  K  I  G  F  Y  F  S  A  S  W  C  G  P  C  K  H  F  T  P  N  L  V  E  A  Y  N  A  L  L  P  K  G  D  F  E  V  V  F  L  T  A  D  M  D  D  E  S  F  K  E  Y  F  S  K  M  P  W  L  A  V  P  F  S  D  S  E  T  R  K  R  L  N  E  L  F  A  V  R  G  I  P  H  L  V  I  L  D  A  S  G  K  V  V  T  N  S  G  V  E  I  I  V  E  H  G  V  E  G  Y  P  F  T  Q  E  R  L  N  E  L  K  E  Q  E  E  T  A  K  R  E  Q  S  L  K  S  I  L  E  S  Q  S  R  N  Y  V  I  A  A  D  G  R  K  :  V  P  V  A  E  L  E  G  K  I  I  G  L  Y  M  S  M  A  S  F  E  E  C  E  S  F  T  G  K  L  I  E  M  Y  D  K  L  K  S  Q  G  E  N  F  E  I  V  M  I  P  L  D  D  E  D  D  D  E  S  F  K  K  E  F  S  R  M  P  W  F  S  L  P  L  K  D  K  T  C  K  K  L  A  R  Y  F  E  L  S  T  L  P  T  L  V  I  I  G  T  D  G  K  T  L  H  S  N  V  A  E  A  V  E  E  H  G  I  L  A  Y  P  F  S  H  E  K  F  A  E  L  E  Q  I  Q  K  A  K  L  E  A  Q  T  L  E  S  I  L  V  T  R  D  R  D  F  V  I  G  K  D  G  E  K  :  I  L  V  S  D  L  V  G  K  T  I  L  L  Y  F  S  A  H  W  C  P  P  C  R  A  F  T  P  Q  L  K  E  A  Y  E  T  I  K  S  K  N  G  P  L  E  V  I  F  L  S  S  D  Q  D  Q  A  S  F  D  E  Y  F  A  T  M  P  W  L  A  L  P  F  G  D  E  R  K  T  Y  L  S  R  L  F  K  V  R  G  I  P  T  L  V  A  V  G  P  S  G  K  T  V  T  T  D  A  R  S  L  I  M  C  H  G  A  K  A  F  P  F  T  E  E  R  M  E  E  I  E  A  E  T  A  E  M  A  K  G  W  P  E  K  I  M  H  K  L  H  E  H  E  L  L  L  S  K  R  S  A  Y  N  C  D  V  C  E  E  L  G  Q  I  W  S  F  Y  C  E  E  C  D  F  D  M  H  P  K  C  A  L  E  E  E  K  E  S  N  M  D  I  E  E  D  Q  K  D  H  M  H  P  N  Y  A  L  E  E  E  K  E  S  N  M  D  I  E  E  D  Q  K  D  Q  G  K  E  E  Q  K  T  N  E  G  W  I  C  D  G  E  V  C  F  K  G  *  F  V  I  M  S  C  *  L  *  G  I  C  *  A  A  Y  L  W  V  L  K  L  F  F  V  R  H  F  Y  P  K  I  L  S  L  L  C  N  T  S  F  I  K  R  W  T  C  I  *  S  *  W  Y  C  L  S  P  C  L  S  S  L  *  V  K  L  F  V  K  D  N  D  I  D   </second_frame>
            <third_frame>   L  Q  N  F  V  I  N  I  K  K  K  N  T  K  R  Q  W  Q  G  K  I  V  M  M  *  S  I  Y  L  V  L  Q  I  V  T  F  L  F  A  T  M  V  T  R :   L  S  L  I  L  *  R  R  K  K  L  V  S  T  F  Q  H  H  G  V  V  R  A  N  I  S  P  Q  I  W  *  R  R  T  M  L  S  Y  Q  K  E  T  L  K  L  F  S  L  L  L  I  W  M  M  N  L  L  R  S  T  F  L  K  C  L  G  S  L  S  H  S  L  I  L  K  H  V  N  V  *  M  N  C  L  L  L  G  E  Y  P  T  *  *  S  L  M  L  V  G  R  *  *  Q  I  A  G  L  K  S  L  L  S  M  G  W  R  A  T  H  S  L  K  N  G  *  T  N  L  K  S  K  K  K  P  L  K  E  N  S  L  *  N  L  S  W  S  H  S  Q  E  T  T  *  L  R  L  M  E  G  R :   Y  L  L  L  S  L  K  A  R  L  *  A  Y  I  C  Q  W  L  L  L  K  N  V  N  P  L  L  G  S  *  S  R  C  M  T  S  *  S  L  R  E  K  T  L  R  L  S  *  F  L  L  T  M  K  M  M  M  N  L  L  R  K  S  F  R  E  C  L  G  F  H  F  P  *  K  T  R  P  A  R  S  W  P  G  T  L  S  S  L  P  F  L  P  *  S  S  L  E  Q  M  G  R  L  F  I  L  M  L  L  K  P  S  R  S  M  V  S  W  H  I  L  L  A  T  R  S  L  L  N  L  S  R  Y  R  K  L  N  W  K  H  K  R  W  S  R  F  W  L  L  E  I  V  I  S  S  L  E  K  M  V  K  R :   S  S  C  L  T  S  *  G  R  L  F  S  F  T  S  Q  H  I  G  V  L  H  A  V  L  L  H  H  S  L  K  R  H  M  R  R  *  N  P  K  M  V  H  W  K  *  Y  S  Y  L  A  T  K  I  K  P  H  L  M  S  I  L  L  Q  C  H  G  W  L  F  R  L  V  M  R  G  R  H  I  *  V  A  Y  S  K  F  V  A  Y  Q  H  W  L  L  *  G  H  Q  A  R  L  L  Q  L  T  P  E  V  *  S  C  V  M  V  L  R  L  F  H  S  P  R  S  V  W  R  R  L  K  Q  K  L  Q  K  W  Q  R  G  G  L  R  K  L  C  T  N  F  T  S  M  N  F  C  F  L  S  V  L  L  T  I  V  M  Y  A  R  S  W  D  R  Y  G  H  S  I  V  K  N  V  T  L  I  C  T  Q  N  V  L  *  K  R  K  R  K  A  T  W  I  S  R  K  I  K  R  I  I  C  T  Q  I  M  L  *  K  R  K  R  K  A  T  W  I  S  R  K  I  K  R  I  K  A  K  R  N  R  K  Q  M  R  D  G  F  V  M  V  K  F  V  S  K  V  N  L  S  L  C  L  V  D  Y  E  A  F  A  E  Q  H  I  C  G  F  *  N  C  S  L  *  D  T  S  I  L  K  S  C  H  F  Y  A  I  L  V  L  L  N  V  G  P  V  F  D  P  D  G  T  V  Y  L  H  V  Y  R  L  Y  E  S  S  Y  L  *  K  I  M  I  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37996" stop="37886"/>
                    <exon start="31427" stop="30948"/>
                    <exon start="30847" stop="30362"/>
                    <exon start="30198" stop="29443"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1830</number_coding_nucleotides>
                  <number_encoded_amino_acids>610</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQKKKHKETMAGENCHDVINLLGSSDRDFLIRNNGDKVKLDTLKEKKIGFYFSASWCGPCKHFTPNLVEAYNALLPKGDFEVVFLTADMDDESFKEYFSKMPWLAVPFSDSETRKRLNELFAVRGIPHLVILDASGKVVTNSGVEIIVEHGVEGYPFTQERLNELKEQEETAKREQSLKSILESQSRNYVIAADGRKVPVAELEGKIIGLYMSMASFEECESFTGKLIEMYDKLKSQGENFEIVMIPLDDEDDDESFKKEFSRMPWFSLPLKDKTCKKLARYFELSTLPTLVIIGTDGKTLHSNVAEAVEEHGILAYPFSHEKFAELEQIQKAKLEAQTLESILVTRDRDFVIGKDGEKILVSDLVGKTILLYFSAHWCPPCRAFTPQLKEAYETIKSKNGPLEVIFLSSDQDQASFDEYFATMPWLALPFGDERKTYLSRLFKVRGIPTLVAVGPSGKTVTTDARSLIMCHGAKAFPFTEERMEEIEAETAEMAKGWPEKIMHKLHEHELLLSKRSAYNCDVCEELGQIWSFYCEECDFDMHPKCALEEEKESNMDIEEDQKDHMHPNYALEEEKESNMDIEEDQKDQGKEEQKTNEGWICDGEVCFKG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37923" e_stop="37886"/>
            <exon e_start="31427" e_stop="30362"/>
            <exon e_start="30198" e_stop="30046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37923" e_stop="37886" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.857">
            <gDNA_intron_boundary i_start="37885" i_stop="31428" i_length="6458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31427" e_stop="30362" e_length="1066"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.930">
            <gDNA_intron_boundary i_start="30361" i_stop="30199" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="30198" e_stop="30046" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37923" stop="37886"/>
              <exon start="31427" stop="31143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31247" stop="30667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30801" stop="30362"/>
              <exon start="30198" stop="30111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30633" stop="30362"/>
              <exon start="30198" stop="30046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGATCGTGACTTTCTTATTCGCAACAATGGTGACAAG : GTTAAGCTTGATACTTTAAAGGAGAAAAAAATTGGTTTCTACTTTTCAGCATCATGGTGTGGTCCGTGCAAACATTTCACCCCAAATTTGGTAGAGGCGTACAATGCTCTCCTACCAAAAGGAGACTTTGAAGTTGTTTTCCTTACTGCTGATATGGATGATGAATCTTTTAAGGAGTACTTTTCTAAAATGCCTTGGCTCGCTGTCCCATTCTCTGATTCTGAAACACGTAAACGTTTGAATGAATTGTTTGCTGTTAGGGGAATACCCCACTTAGTGATCCTTGATGCTAGTGGGAAGGTAGTGACAAATAGCGGGGTTGAAATCATTGTTGAGCATGGGGTGGAGGGCTACCCATTCACTCAAGAACGGCTAAACGAACTTAAAGAGCAAGAAGAAACCGCTAAAAGAGAACAGTCTTTGAAATCTATCTTGGAGTCACAGTCAAGAAACTACGTAATTGCGGCTGATGGAAGGAAGGTTGATTCAAGATGCTGCTCTTCTCTCCTTCATTTCATACTCTTGTTTATTAATAAAAGTTTCCCTCATTACTTTTTTGCTGTGTCTTGATAATTATCAGGTACCTGTTGCTGAGCTTGAAGGCAAGATTATAGGCCTATATATGTCAATGGCTTCTTTTGAAGAATGTGAATCCTTTACTGGGAAGCTGATCGAGATGTATGACAAGTTGAAGTCTCAGGGAGAAAACTTTGAGATTGTCATGATTCCTCTTGACGATGAAGATGATGATGAATCTTTTAAGAAAGAGTTTTCGAGAATGCCTTGGTTTTCACTTCCCTTAAAAGACAAGACCTGCAAGAAGCTGGCCAGGTACTTTGAGCTCTCTACCCTTCCTACCCTAGTCATCATTGGAACAGATGGGAAGACTCTTCATTCTAATGTTGCTGAAGCCGTCGAGGAGCATGGTATCCTGGCATATCCTTTTAGCCACGAGAAGTTTGCTGAACTTGAGCAGATACAGAAAGCTAAACTGGAAGCACAAACGTTGGAGTCGATTTTGGTTACTAGAGATCGTGATTTCGTCATTGGAAAAGATGGTGAAAAG : ATCCTCGTGTCTGACCTCGTAGGGAAGACTATTCTCCTTTACTTCTCAGCACATTGGTGTCCTCCATGCCGTGCTTTTACACCACAGCTTAAAGAGGCATATGAGACGATAAAATCCAAAAATGGTCCATTGGAAGTGATATTCTTATCTAGC</gDNA_template>
            <first_frame> Q  I  V  T  F  L  F  A  T  M  V  T  R :   L  S  L  I  L  *  R  R  K  K  L  V  S  T  F  Q  H  H  G  V  V  R  A  N  I  S  P  Q  I  W  *  R  R  T  M  L  S  Y  Q  K  E  T  L  K  L  F  S  L  L  L  I  W  M  M  N  L  L  R  S  T  F  L  K  C  L  G  S  L  S  H  S  L  I  L  K  H  V  N  V  *  M  N  C  L  L  L  G  E  Y  P  T  *  *  S  L  M  L  V  G  R  *  *  Q  I  A  G  L  K  S  L  L  S  M  G  W  R  A  T  H  S  L  K  N  G  *  T  N  L  K  S  K  K  K  P  L  K  E  N  S  L  *  N  L  S  W  S  H  S  Q  E  T  T  *  L  R  L  M  E  G  R  L  I  Q  D  A  A  L  L  S  F  I  S  Y  S  C  L  L  I  K  V  S  L  I  T  F  L  L  C  L  D  N  Y  Q  V  P  V  A  E  L  E  G  K  I  I  G  L  Y  M  S  M  A  S  F  E  E  C  E  S  F  T  G  K  L  I  E  M  Y  D  K  L  K  S  Q  G  E  N  F  E  I  V  M  I  P  L  D  D  E  D  D  D  E  S  F  K  K  E  F  S  R  M  P  W  F  S  L  P  L  K  D  K  T  C  K  K  L  A  R  Y  F  E  L  S  T  L  P  T  L  V  I  I  G  T  D  G  K  T  L  H  S  N  V  A  E  A  V  E  E  H  G  I  L  A  Y  P  F  S  H  E  K  F  A  E  L  E  Q  I  Q  K  A  K  L  E  A  Q  T  L  E  S  I  L  V  T  R  D  R  D  F  V  I  G  K  D  G  E  K  :  I  L  V  S  D  L  V  G  K  T  I  L  L  Y  F  S  A  H  W  C  P  P  C  R  A  F  T  P  Q  L  K  E  A  Y  E  T  I  K  S  K  N  G  P  L  E  V  I  F  L  S  S </first_frame>
            <second_frame>  R  S  *  L  S  Y  S  Q  Q  W  *  Q   : G  *  A  *  Y  F  K  G  E  K  N  W  F  L  L  F  S  I  M  V  W  S  V  Q  T  F  H  P  K  F  G  R  G  V  Q  C  S  P  T  K  R  R  L  *  S  C  F  P  Y  C  *  Y  G  *  *  I  F  *  G  V  L  F  *  N  A  L  A  R  C  P  I  L  *  F  *  N  T  *  T  F  E  *  I  V  C  C  *  G  N  T  P  L  S  D  P  *  C  *  W  E  G  S  D  K  *  R  G  *  N  H  C  *  A  W  G  G  G  L  P  I  H  S  R  T  A  K  R  T  *  R  A  R  R  N  R  *  K  R  T  V  F  E  I  Y  L  G  V  T  V  K  K  L  R  N  C  G  *  W  K  E  G  *  F  K  M  L  L  F  S  P  S  F  H  T  L  V  Y  *  *  K  F  P  S  L  L  F  C  C  V  L  I  I  I  R  Y  L  L  L  S  L  K  A  R  L  *  A  Y  I  C  Q  W  L  L  L  K  N  V  N  P  L  L  G  S  *  S  R  C  M  T  S  *  S  L  R  E  K  T  L  R  L  S  *  F  L  L  T  M  K  M  M  M  N  L  L  R  K  S  F  R  E  C  L  G  F  H  F  P  *  K  T  R  P  A  R  S  W  P  G  T  L  S  S  L  P  F  L  P  *  S  S  L  E  Q  M  G  R  L  F  I  L  M  L  L  K  P  S  R  S  M  V  S  W  H  I  L  L  A  T  R  S  L  L  N  L  S  R  Y  R  K  L  N  W  K  H  K  R  W  S  R  F  W  L  L  E  I  V  I  S  S  L  E  K  M  V  K  R :   S  S  C  L  T  S  *  G  R  L  F  S  F  T  S  Q  H  I  G  V  L  H  A  V  L  L  H  H  S  L  K  R  H  M  R  R  *  N  P  K  M  V  H  W  K  *  Y  S  Y  L   </second_frame>
            <third_frame>   D  R  D  F  L  I  R  N  N  G  D  K  :  V  K  L  D  T  L  K  E  K  K  I  G  F  Y  F  S  A  S  W  C  G  P  C  K  H  F  T  P  N  L  V  E  A  Y  N  A  L  L  P  K  G  D  F  E  V  V  F  L  T  A  D  M  D  D  E  S  F  K  E  Y  F  S  K  M  P  W  L  A  V  P  F  S  D  S  E  T  R  K  R  L  N  E  L  F  A  V  R  G  I  P  H  L  V  I  L  D  A  S  G  K  V  V  T  N  S  G  V  E  I  I  V  E  H  G  V  E  G  Y  P  F  T  Q  E  R  L  N  E  L  K  E  Q  E  E  T  A  K  R  E  Q  S  L  K  S  I  L  E  S  Q  S  R  N  Y  V  I  A  A  D  G  R  K  V  D  S  R  C  C  S  S  L  L  H  F  I  L  L  F  I  N  K  S  F  P  H  Y  F  F  A  V  S  *  *  L  S  G  T  C  C  *  A  *  R  Q  D  Y  R  P  I  Y  V  N  G  F  F  *  R  M  *  I  L  Y  W  E  A  D  R  D  V  *  Q  V  E  V  S  G  R  K  L  *  D  C  H  D  S  S  *  R  *  R  *  *  *  I  F  *  E  R  V  F  E  N  A  L  V  F  T  S  L  K  R  Q  D  L  Q  E  A  G  Q  V  L  *  A  L  Y  P  S  Y  P  S  H  H  W  N  R  W  E  D  S  S  F  *  C  C  *  S  R  R  G  A  W  Y  P  G  I  S  F  *  P  R  E  V  C  *  T  *  A  D  T  E  S  *  T  G  S  T  N  V  G  V  D  F  G  Y  *  R  S  *  F  R  H  W  K  R  W  *  K   : D  P  R  V  *  P  R  R  E  D  Y  S  P  L  L  L  S  T  L  V  S  S  M  P  C  F  Y  T  T  A  *  R  G  I  *  D  D  K  I  Q  K  W  S  I  G  S  D  I  L  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30967" stop="30362"/>
                    <exon start="30198" stop="30046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRLMEGRLIQDAALLSFISYSCLLIKVSLITFLLCLDNYQVPVAELEGKIIGLYMSMASFEECESFTGKLIEMYDKLKSQGENFEIVMIPLDDEDDDESFKKEFSRMPWFSLPLKDKTCKKLARYFELSTLPTLVIIGTDGKTLHSNVAEAVEEHGILAYPFSHEKFAELEQIQKAKLEAQTLESILVTRDRDFVIGKDGEKILVSDLVGKTILLYFSAHWCPPCRAFTPQLKEAYETIKSKNGPLEVIFLSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="35371" PGL_stop="36019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35371" e_stop="36019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="35371" e_stop="36019" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35371" stop="36019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35372" stop="35756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAAACATGGGATCTGGTCATACAGCCTTCGAGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  N  M  G  S  G  H  T  A  F  E  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  R  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  K  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35372" stop="36019"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSRRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="36030" PGL_stop="36837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36030" e_stop="36837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="36030" e_stop="36837" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36030" stop="36837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTAGGCTATACTCGGAGCTCATATGACTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTAGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTTGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTTTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACATAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  *  A  I  L  G  A  H  M  T  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  *  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  L  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  L  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  *  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  R  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  S  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  C  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  F  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  I  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36032" stop="36835"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVFTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDIRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="63237" PGL_stop="62831"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63237" e_stop="62831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="63237" e_stop="62831" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63237" stop="62831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63237" stop="62831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244014" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAACGGTTAATCCATCTTCAGGCTACAGCCTCATGCCCAATCACCTGCCTCCTAATTTTTCAATGGCTAATCACAATGGTTATTATGTGTATCCACCACCAATAGACAACAGTTATAGGCAGGGGGATGCATCAAGTGGAAGCACTTCTCATGCGTGTGCAGTGGCTGCTGTGGATGGTGACGTTAAGTCTCCTGCGGAAAAGAGTGAGGAGTGATCAGTTTCTGATCTGCCGAAGGAATTGAGCCTTACCTGAAACTTCAAGATTAGTGAAAAAAGTAGACTATCTTTCTCTGTTACATAATTTGAGAACTATTGACAATCAAGTATAGTTCTTTGTGAAGTTTAGGAATGTTCCTTCGAACTAAGCGAGCCAAATGGTGGCCCTCTTAATTGGCTGTTTAATTT</gDNA_template>
            <first_frame> P  T  V  N  P  S  S  G  Y  S  L  M  P  N  H  L  P  P  N  F  S  M  A  N  H  N  G  Y  Y  V  Y  P  P  P  I  D  N  S  Y  R  Q  G  D  A  S  S  G  S  T  S  H  A  C  A  V  A  A  V  D  G  D  V  K  S  P  A  E  K  S  E  E  *  S  V  S  D  L  P  K  E  L  S  L  T  *  N  F  K  I  S  E  K  S  R  L  S  F  S  V  T  *  F  E  N  Y  *  Q  S  S  I  V  L  C  E  V  *  E  C  S  F  E  L  S  E  P  N  G  G  P  L  N  W  L  F  N   </first_frame>
            <second_frame>  Q  R  L  I  H  L  Q  A  T  A  S  C  P  I  T  C  L  L  I  F  Q  W  L  I  T  M  V  I  M  C  I  H  H  Q  *  T  T  V  I  G  R  G  M  H  Q  V  E  A  L  L  M  R  V  Q  W  L  L  W  M  V  T  L  S  L  L  R  K  R  V  R  S  D  Q  F  L  I  C  R  R  N  *  A  L  P  E  T  S  R  L  V  K  K  V  D  Y  L  S  L  L  H  N  L  R  T  I  D  N  Q  V  *  F  F  V  K  F  R  N  V  P  S  N  *  A  S  Q  M  V  A  L  L  I  G  C  L  I  </second_frame>
            <third_frame>   N  G  *  S  I  F  R  L  Q  P  H  A  Q  S  P  A  S  *  F  F  N  G  *  S  Q  W  L  L  C  V  S  T  T  N  R  Q  Q  L  *  A  G  G  C  I  K  W  K  H  F  S  C  V  C  S  G  C  C  G  W  *  R  *  V  S  C  G  K  E  *  G  V  I  S  F  *  S  A  E  G  I  E  P  Y  L  K  L  Q  D  *  *  K  K  *  T  I  F  L  C  Y  I  I  *  E  L  L  T  I  K  Y  S  S  L  *  S  L  G  M  F  L  R  T  K  R  A  K  W  W  P  S  *  L  A  V  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63237" stop="63022"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTVNPSSGYSLMPNHLPPNFSMANHNGYYVYPPPIDNSYRQGDASSGSTSHACAVAAVDGDVKSPAEKSEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="80673" PGL_stop="80233"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80673" e_stop="80233"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="80673" e_stop="80233" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80673" stop="80233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAAATTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAAATAGTTTAATTTTTTATTCTTTAAATGAAGGAATGAAAGAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAACAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGTACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTTTAAAAAAATTAGAAATAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTATAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGATATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCC</gDNA_template>
            <first_frame> L  L  *  M  T  K  I  F  L  R  I  R  N  *  I  T  I  H  T  K  K  N  S  L  I  F  Y  S  L  N  E  G  M  K  E  K  T  K  *  E  *  E  I  Q  I  I  I  T  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  C  T  L  I  E  E  S  Y  I  P  L  N  N  F  F  K  K  I  R  N  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  I  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  I  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F  P </first_frame>
            <second_frame>  Y  C  R  *  P  K  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  K  I  V  *  F  F  I  L  *  M  K  E  *  K  K  K  Q  N  K  N  K  K  F  K  *  L  *  Q  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  V  L  *  *  K  N  H  I  Y  P  *  I  I  F  L  K  K  L  E  I  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F   </second_frame>
            <third_frame>   I  V  D  D  Q  N  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  K  *  F  N  F  L  F  F  K  *  R  N  E  R  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  Y  F  D  R  R  I  I  Y  T  P  K  *  F  F  *  K  N  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  F  Y  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  D  I  S  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0086I08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="94749" PGL_stop="92840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94749" e_stop="94646"/>
            <exon e_start="93436" e_stop="92840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94749" e_stop="94646" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="94645" i_stop="93437" i_length="1209"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93436" e_stop="92840" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94749" stop="94646"/>
              <exon start="93436" stop="92840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATATTAGAGAGAGAAAGAGATGGATGGTGGTTCAGGAAATGGAGGATTTCATAGCTATCGCAGATCTCCACAACCAACCCCTGCAGATCCCCCTTCCTCTG : ATGTGGAGATGAGCCTGGAACTGCCTGCACATCTCAACCAGGAAGTTGATGAAATCATCAGTCAGGAGCAAGACGAAGTCATACCAAACGTGGCCAGAATCATGCATAGCACCCATCCTTCCCATGTCAAGATATCCGATGACGCCAAACGGACCATGTACCATTGTATGTCTGAGTTCATATGCTTTGTAACATACGAAGCCAACACGCATTGCCAGCGTGAGCAGCGGAACACAATCACTGTTGAAGACGTGGATTGGGTCATTAACAAGTTTGGGTTTGATGACTACATTGAACCCTTGCCTTACTACTTTCCTCCAAATAGTGAGGATGATGGTGGCGAGTGTGGATCTCTTACAAGGGAGTCTTTGTTGAAGTGTCCAATGGTTGATACAGCTTCAAGCTCCAATATCACACCCTATAGCGTTCCTCCTAATTTTCCTATGGCTCATCACCACTTTGTGTATCCACCACCAATGGGAAATGGTGATATGCAGGGGGAGGCAAGCACTTCTCAGTATGCAGGGGTTTCAGTGGATACTGACGTTGAGTCTCCTATGGAGGAGGATAAGGAGTGAACAATTTATCGATCTATTG</gDNA_template>
            <first_frame> E  I  L  E  R  E  R  D  G  W  W  F  R  K  W  R  I  S  *  L  S  Q  I  S  T  T  N  P  C  R  S  P  F  L  * :   C  G  D  E  P  G  T  A  C  T  S  Q  P  G  S  *  *  N  H  Q  S  G  A  R  R  S  H  T  K  R  G  Q  N  H  A  *  H  P  S  F  P  C  Q  D  I  R  *  R  Q  T  D  H  V  P  L  Y  V  *  V  H  M  L  C  N  I  R  S  Q  H  A  L  P  A  *  A  A  E  H  N  H  C  *  R  R  G  L  G  H  *  Q  V  W  V  *  *  L  H  *  T  L  A  L  L  L  S  S  K  *  *  G  *  W  W  R  V  W  I  S  Y  K  G  V  F  V  E  V  S  N  G  *  Y  S  F  K  L  Q  Y  H  T  L  *  R  S  S  *  F  S  Y  G  S  S  P  L  C  V  S  T  T  N  G  K  W  *  Y  A  G  G  G  K  H  F  S  V  C  R  G  F  S  G  Y  *  R  *  V  S  Y  G  G  G  *  G  V  N  N  L  S  I  Y   </first_frame>
            <second_frame>  K  Y  *  R  E  K  E  M  D  G  G  S  G  N  G  G  F  H  S  Y  R  R  S  P  Q  P  T  P  A  D  P  P  S  S   : D  V  E  M  S  L  E  L  P  A  H  L  N  Q  E  V  D  E  I  I  S  Q  E  Q  D  E  V  I  P  N  V  A  R  I  M  H  S  T  H  P  S  H  V  K  I  S  D  D  A  K  R  T  M  Y  H  C  M  S  E  F  I  C  F  V  T  Y  E  A  N  T  H  C  Q  R  E  Q  R  N  T  I  T  V  E  D  V  D  W  V  I  N  K  F  G  F  D  D  Y  I  E  P  L  P  Y  Y  F  P  P  N  S  E  D  D  G  G  E  C  G  S  L  T  R  E  S  L  L  K  C  P  M  V  D  T  A  S  S  S  N  I  T  P  Y  S  V  P  P  N  F  P  M  A  H  H  H  F  V  Y  P  P  P  M  G  N  G  D  M  Q  G  E  A  S  T  S  Q  Y  A  G  V  S  V  D  T  D  V  E  S  P  M  E  E  D  K  E  *  T  I  Y  R  S  I  </second_frame>
            <third_frame>   N  I  R  E  R  K  R  W  M  V  V  Q  E  M  E  D  F  I  A  I  A  D  L  H  N  Q  P  L  Q  I  P  L  P  L  :  M  W  R  *  A  W  N  C  L  H  I  S  T  R  K  L  M  K  S  S  V  R  S  K  T  K  S  Y  Q  T  W  P  E  S  C  I  A  P  I  L  P  M  S  R  Y  P  M  T  P  N  G  P  C  T  I  V  C  L  S  S  Y  A  L  *  H  T  K  P  T  R  I  A  S  V  S  S  G  T  Q  S  L  L  K  T  W  I  G  S  L  T  S  L  G  L  M  T  T  L  N  P  C  L  T  T  F  L  Q  I  V  R  M  M  V  A  S  V  D  L  L  Q  G  S  L  C  *  S  V  Q  W  L  I  Q  L  Q  A  P  I  S  H  P  I  A  F  L  L  I  F  L  W  L  I  T  T  L  C  I  H  H  Q  W  E  M  V  I  C  R  G  R  Q  A  L  L  S  M  Q  G  F  Q  W  I  L  T  L  S  L  L  W  R  R  I  R  S  E  Q  F  I  D  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94739" stop="94646"/>
                    <exon start="93436" stop="92859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REKEMDGGSGNGGFHSYRRSPQPTPADPPSSDVEMSLELPAHLNQEVDEIISQEQDEVIPNVARIMHSTHPSHVKISDDAKRTMYHCMSEFICFVTYEANTHCQREQRNTITVEDVDWVINKFGFDDYIEPLPYYFPPNSEDDGGECGSLTRESLLKCPMVDTASSSNITPYSVPPNFPMAHHHFVYPPPMGNGDMQGEASTSQYAGVSVDTDVESPMEEDKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="112064" PGL_stop="111442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112064" e_stop="111442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112064" e_stop="111442" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112064" stop="111442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGTTGTGTATCTCAAGTATATACACGTAAAGACTTGTTACTAACCATTCTTCGGAGTGTTAAGAAGGATATAGTTATCAGTGATAAACTACCAGAGAATGAATTAGCAGATAAGTTGCGTAAACTTCTATTTGGTCAGAGGTACCTTATCCTCATTGATGATGTCTGGGAAACTACTGCATGTGATGAACTAATGCCATGCTTCTATGATGCCAATAATGGAAGTAGACTTATCCTGACAACTCGCCATGATCATGTTGCCTACCATGCTAAACTCGTTAGTGATCCTCATTTTCTTCGAAAATTTACTCTAGAAGAAAGTTGGATGCTATTGAAGAATAAAGTGTTCAATGAAAAATGTTGCCCTGTAGTCTTAGAAGATGTTGGCCAAAAGATAGCACAAAAGTGTGGTGGGCTACCTCTTTCAGTTGTCCTGGTAGCAGGTATTCTCGAAACGATGGAGAAGGAGGAACATTGTTGGGAACAAGTTGCAATAAATTTAGGTCCACATATCCAGGCTAAGTCAGAGGATATAATAAATCTTAGTTACCAAGATTTACCATTTCATTTGAAACCTTGCTTTTTGTATTTTGGAGTACTTTCGGAAGATGAAGAGATAAAG</gDNA_template>
            <first_frame> N  V  V  Y  L  K  Y  I  H  V  K  T  C  Y  *  P  F  F  G  V  L  R  R  I  *  L  S  V  I  N  Y  Q  R  M  N  *  Q  I  S  C  V  N  F  Y  L  V  R  G  T  L  S  S  L  M  M  S  G  K  L  L  H  V  M  N  *  C  H  A  S  M  M  P  I  M  E  V  D  L  S  *  Q  L  A  M  I  M  L  P  T  M  L  N  S  L  V  I  L  I  F  F  E  N  L  L  *  K  K  V  G  C  Y  *  R  I  K  C  S  M  K  N  V  A  L  *  S  *  K  M  L  A  K  R  *  H  K  S  V  V  G  Y  L  F  Q  L  S  W  *  Q  V  F  S  K  R  W  R  R  R  N  I  V  G  N  K  L  Q  *  I  *  V  H  I  S  R  L  S  Q  R  I  *  *  I  L  V  T  K  I  Y  H  F  I  *  N  L  A  F  C  I  L  E  Y  F  R  K  M  K  R  *   </first_frame>
            <second_frame>  M  L  C  I  S  S  I  Y  T  *  R  L  V  T  N  H  S  S  E  C  *  E  G  Y  S  Y  Q  *  *  T  T  R  E  *  I  S  R  *  V  A  *  T  S  I  W  S  E  V  P  Y  P  H  *  *  C  L  G  N  Y  C  M  *  *  T  N  A  M  L  L  *  C  Q  *  W  K  *  T  Y  P  D  N  S  P  *  S  C  C  L  P  C  *  T  R  *  *  S  S  F  S  S  K  I  Y  S  R  R  K  L  D  A  I  E  E  *  S  V  Q  *  K  M  L  P  C  S  L  R  R  C  W  P  K  D  S  T  K  V  W  W  A  T  S  F  S  C  P  G  S  R  Y  S  R  N  D  G  E  G  G  T  L  L  G  T  S  C  N  K  F  R  S  T  Y  P  G  *  V  R  G  Y  N  K  S  *  L  P  R  F  T  I  S  F  E  T  L  L  F  V  F  W  S  T  F  G  R  *  R  D  K  </second_frame>
            <third_frame>   C  C  V  S  Q  V  Y  T  R  K  D  L  L  L  T  I  L  R  S  V  K  K  D  I  V  I  S  D  K  L  P  E  N  E  L  A  D  K  L  R  K  L  L  F  G  Q  R  Y  L  I  L  I  D  D  V  W  E  T  T  A  C  D  E  L  M  P  C  F  Y  D  A  N  N  G  S  R  L  I  L  T  T  R  H  D  H  V  A  Y  H  A  K  L  V  S  D  P  H  F  L  R  K  F  T  L  E  E  S  W  M  L  L  K  N  K  V  F  N  E  K  C  C  P  V  V  L  E  D  V  G  Q  K  I  A  Q  K  C  G  G  L  P  L  S  V  V  L  V  A  G  I  L  E  T  M  E  K  E  E  H  C  W  E  Q  V  A  I  N  L  G  P  H  I  Q  A  K  S  E  D  I  I  N  L  S  Y  Q  D  L  P  F  H  L  K  P  C  F  L  Y  F  G  V  L  S  E  D  E  E  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112062" stop="111442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCVSQVYTRKDLLLTILRSVKKDIVISDKLPENELADKLRKLLFGQRYLILIDDVWETTACDELMPCFYDANNGSRLILTTRHDHVAYHAKLVSDPHFLRKFTLEESWMLLKNKVFNEKCCPVVLEDVGQKIAQKCGGLPLSVVLVAGILETMEKEEHCWEQVAINLGPHIQAKSEDIINLSYQDLPFHLKPCFLYFGVLSEDEEIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="114393" PGL_stop="114809"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114393" e_stop="114809"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="114393" e_stop="114809" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114393" stop="114809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCCAAGATTTACATGGAAAACCCTTCGATGTGAAGAGTAAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAGTGCCAAACAATGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACTAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGGCCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAATATAATATGTTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTAAAGTTGGCTGTTTGGGCTGAACTTCGACTGCGAAAAACTGCTCTTTTTCTCTCTTTTTGGCTGCTGAAAAAACTCTCT</gDNA_template>
            <first_frame> R  Q  D  L  H  G  K  P  F  D  V  K  S  K  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  S  A  K  Q  *  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  *  F  R  S  Y  C  S  R  Q  Q  N  *  S  C  R  P  P  N  P  T  L  S  V  P  N  Q  R  L  R  *  I  *  Y  V  V  Q  K  S  A  Q  S  D  K  K  R  S  G  N  R  N  L  K  L  A  V  W  A  E  L  R  L  R  K  T  A  L  F  L  S  F  W  L  L  K  K  L  S </first_frame>
            <second_frame>  A  K  I  Y  M  E  N  P  S  M  *  R  V  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  Q  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  A  G  H  Q  I  Q  L  C  Q  F  L  I  K  D  *  D  E  Y  N  M  L  S  K  N  Q  L  N  R  T  R  N  E  A  G  I  A  I  *  S  W  L  F  G  L  N  F  D  C  E  K  L  L  F  F  S  L  F  G  C  *  K  N  S   </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  R  C  E  E  *  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  N  K  C  Q  T  M  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  L  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  A  T  K  S  N  S  V  S  S  *  S  K  I  E  M  N  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  K  V  G  C  L  G  *  T  S  T  A  K  N  C  S  F  S  L  F  L  A  A  E  K  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0086I08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="125440" PGL_stop="126133"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125440" e_stop="126133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125440" e_stop="126133" e_length="694"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125440" stop="126133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAGTCGAACTACTGAACTCAATCACTTGTTATTTACTCTACAATTTTCTATCAAGGCTCGTCCTACGTCCTACCTACCCTAACATAATCGTCACGACCCAAAATTATCAAGAAAATGGATCAATTGCAACCACAACAACCAGTTCAAGTTTATCCTAACAATCCAAACAATTTCCCTAACCAACCAAACAATATGCCAATGACTCAATCCTCTTCTTCTCATAACTCATCCAATGGTTCATTTGTGAGTGTTTTTGTTGTCCTAGCTATTGTTTTTGTCATATCTGTTATTGCTTGTGTTGTGGGACGTTTATGTAGCAAGAAAAGCAATGGAGCTAATAAGGTGAAGAAAAGTAGTCATGGTCAACCACAAAAACAAAAAGAGGGAAAACATAATAATAATAATAAGCACAATGAGTTTCACAATAAAAGAGGAGGAGGGGATATAGAATTTGGATTTGATAAGAAAATTGCAAGTTCTAAAGTGGCTGCAGCACATGGAGATAATCATTATAAGGGGTCTAAGCCTCATAAGAATACTAATGGAGGAGTTAGATTTTCTGATAATCATATTGATTTCAAGCTTGGTCCATGAAAACTAGTTGTGTTCATAGAGGAACTCTCTCTATGTACTAATTACTTTGGTAGTAGTTTTAATTTTATTTTGTTAAATTTTTAAGTTTTTATTAACAT</gDNA_template>
            <first_frame> F  S  R  T  T  E  L  N  H  L  L  F  T  L  Q  F  S  I  K  A  R  P  T  S  Y  L  P  *  H  N  R  H  D  P  K  L  S  R  K  W  I  N  C  N  H  N  N  Q  F  K  F  I  L  T  I  Q  T  I  S  L  T  N  Q  T  I  C  Q  *  L  N  P  L  L  L  I  T  H  P  M  V  H  L  *  V  F  L  L  S  *  L  L  F  L  S  Y  L  L  L  L  V  L  W  D  V  Y  V  A  R  K  A  M  E  L  I  R  *  R  K  V  V  M  V  N  H  K  N  K  K  R  E  N  I  I  I  I  I  S  T  M  S  F  T  I  K  E  E  E  G  I  *  N  L  D  L  I  R  K  L  Q  V  L  K  W  L  Q  H  M  E  I  I  I  I  R  G  L  S  L  I  R  I  L  M  E  E  L  D  F  L  I  I  I  L  I  S  S  L  V  H  E  N  *  L  C  S  *  R  N  S  L  Y  V  L  I  T  L  V  V  V  L  I  L  F  C  *  I  F  K  F  L  L  T  </first_frame>
            <second_frame>  L  V  E  L  L  N  S  I  T  C  Y  L  L  Y  N  F  L  S  R  L  V  L  R  P  T  Y  P  N  I  I  V  T  T  Q  N  Y  Q  E  N  G  S  I  A  T  T  T  T  S  S  S  L  S  *  Q  S  K  Q  F  P  *  P  T  K  Q  Y  A  N  D  S  I  L  F  F  S  *  L  I  Q  W  F  I  C  E  C  F  C  C  P  S  Y  C  F  C  H  I  C  Y  C  L  C  C  G  T  F  M  *  Q  E  K  Q  W  S  *  *  G  E  E  K  *  S  W  S  T  T  K  T  K  R  G  K  T  *  *  *  *  *  A  Q  *  V  S  Q  *  K  R  R  R  G  Y  R  I  W  I  *  *  E  N  C  K  F  *  S  G  C  S  T  W  R  *  S  L  *  G  V  *  A  S  *  E  Y  *  W  R  S  *  I  F  *  *  S  Y  *  F  Q  A  W  S  M  K  T  S  C  V  H  R  G  T  L  S  M  Y  *  L  L  W  *  *  F  *  F  Y  F  V  K  F  L  S  F  Y  *  H </second_frame>
            <third_frame>   *  S  N  Y  *  T  Q  S  L  V  I  Y  S  T  I  F  Y  Q  G  S  S  Y  V  L  P  T  L  T  *  S  S  R  P  K  I  I  K  K  M  D  Q  L  Q  P  Q  Q  P  V  Q  V  Y  P  N  N  P  N  N  F  P  N  Q  P  N  N  M  P  M  T  Q  S  S  S  S  H  N  S  S  N  G  S  F  V  S  V  F  V  V  L  A  I  V  F  V  I  S  V  I  A  C  V  V  G  R  L  C  S  K  K  S  N  G  A  N  K  V  K  K  S  S  H  G  Q  P  Q  K  Q  K  E  G  K  H  N  N  N  N  K  H  N  E  F  H  N  K  R  G  G  G  D  I  E  F  G  F  D  K  K  I  A  S  S  K  V  A  A  A  H  G  D  N  H  Y  K  G  S  K  P  H  K  N  T  N  G  G  V  R  F  S  D  N  H  I  D  F  K  L  G  P  *  K  L  V  V  F  I  E  E  L  S  L  C  T  N  Y  F  G  S  S  F  N  F  I  L  L  N  F  *  V  F  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0086I08.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125529" stop="126035"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRPKIIKKMDQLQPQQPVQVYPNNPNNFPNQPNNMPMTQSSSSHNSSNGSFVSVFVVLAIVFVISVIACVVGRLCSKKSNGANKVKKSSHGQPQKQKEGKHNNNNKHNEFHNKRGGGDIEFGFDKKIASSKVAAAHGDNHYKGSKPHKNTNGGVRFSDNHIDFKLGP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 163 chains have been computed
$ 
$ memory statistics:
$ 332600 bytes spliced alignments in total
$ 155 spliced alignments have been stored
$ 2145 bytes was the average size of a spliced alignment
$ 28880 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1925 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 169 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:38:46
-->
