<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:30:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357295" ref_strand="+" ref_description="SGN-E357295 [cTOS-23-M19]">
      <seq>aactacaacatctggttcttgctaccaagctcccgaggcgttaaaagtggtgaaaccatcacaaaaatgggacatttactcgtacggagtgatcttgcttgaaatgatcacgggaagaaccccgattatccaagtaggttctactgaaatggatctcgtaaactggattcactggtgcattgaagagaagaagccactttcggatgtattggactcgtgtttagcacaagatgctgataaagaagaggaaatgatcgcggttttgaagattgcaatggcgtgtgttcacagcagcccggagagaagaccttcaatgagacacatatctgatgcattagacagactgcaagcttcctctgaatgaacaattgaaacagaaccttcaggctggcttcacattgctgcaaggattacagcatctaaccgataaccatgaagcacgatcactgcttggtgcgcgatacatattgactaacagtagtaatctccacttgtttgtgaaggaatatctgtttgaatattggcctttttgctctctgatagcaagctttttcttgtgtctatttgattaagaacataaattatttgtttctctccttattactacattactattcatcttttgtttgtcacaaatgagtatatgtaaataaaaatgatttgtcaaaaatattaaataagatggtgtaagcaataactgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15470" stop="14169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15170" g_stop="14470" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="715"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E357295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15170" e_stop="14470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTACAACATCTGGTTCTTGCTACCAAGCTCCCGAGGCGTTAAAAGTGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGCTTGAAATGATCACGGGAAGAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTCGTAAACTGGATTCACTGGTGCATTGAAGAGAAGAAGCCACTTTCGGATGTATTGGACTCGTGTTTAGCACAAGATGCTGATAAAGAAGAGGAAATGATCGCGGTTTTGAAGATTGCAATGGCGTGTGTTCACAGCAGCCCGGAGAGAAGACCTTCAATGAGACACATATCTGATGCATTAGACAGACTGCAAGCTTCCTCTGAATGAACAATTGAAACAGAACCTTCAGGCTGGCTTCACATTGCTGCAAGGATTACAGCATCTAACCGATAACCATGAAGCACGATCACTGCTTGGTGCGCGATACATATTGACTAACAGTAGTAATCTCCACTTGTTTGTGAAGGAATATCTGTTTGAATATTGGCCTTTTTGCTCTCTGATAGCAAGCTTTTTCTTGTGTCTATTTGATTAAGAACATAAATTATTTGTTTCTCTCCTTATTACTACATTACTATTCATCTTTTGTTTGTCACAAATGAGTATATGTAAATAAAAATGATTTGTCAAAAATATTAAATAAGATGGTGTAAGCAATAACTGT</genome_strand>
        <mrna_strand>AACTACAACATCTGGTTCTTGCTACCAAGCTCCCGAGGCGTTAAAAGTGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGCTTGAAATGATCACGGGAAGAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTCGTAAACTGGATTCACTGGTGCATTGAAGAGAAGAAGCCACTTTCGGATGTATTGGACTCGTGTTTAGCACAAGATGCTGATAAAGAAGAGGAAATGATCGCGGTTTTGAAGATTGCAATGGCGTGTGTTCACAGCAGCCCGGAGAGAAGACCTTCAATGAGACACATATCTGATGCATTAGACAGACTGCAAGCTTCCTCTGAATGAACAATTGAAACAGAACCTTCAGGCTGGCTTCACATTGCTGCAAGGATTACAGCATCTAACCGATAACCATGAAGCACGATCACTGCTTGGTGCGCGATACATATTGACTAACAGTAGTAATCTCCACTTGTTTGTGAAGGAATATCTGTTTGAATATTGGCCTTTTTGCTCTCTGATAGCAAGCTTTTTCTTGTGTCTATTTGATTAAGAACATAAATTATTTGTTTCTCTCCTTATTACTACATTACTATTCATCTTTTGTTTGTCACAAATGAGTATATGTAAATAAAAATGATTTGTCAAAAATATTAAATAAGATGGTGTAAGCAATAACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429976" ref_strand="-" ref_description="SGN-E429976 [STM-52-P6]">
      <seq>caaagtaagcagggcagtgcaccatcagattccgggacagttacatcaactgcaacttcggttcttgctatcaagctcccgaggcattgaaaatggtgaaaccatcacaaaaatgggacatttactcgtacggagtgatcttgtttgaaatgatcacgggaaaaaccccgattatccaagtaggttctactgaaatggatctagtaaactggattcactggtgcattgaagagaagaagccactttcagatgtattggactcatatttagctcaagatgctgataaagaagaagaaatgatcgtggttttgaagattgcaatggcgtgtgttcacagcagcccggagagaagaccttcaatgagacacatatctgatgcattagaaagactgcaagcttcctctgaatgaacgatcgaaacagaacctgaaggcttcacattgcagtaaggatcacagcatctaaccgataactatgaagcacgatcactgcttggcgcgcgatacatattgactaacagtagtaatctccacttgattgtttgaatatttgccttcttgctctctaattgcaaggtttttgttgtgtctatttgttgtttccttctattgatgaacataaattatttgttctctctatattactactactattcaaaaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15517" stop="14253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15217" g_stop="14604" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="669"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E429976" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429976" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15217" e_stop="14604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTAAGCAAGGCAGTGCGCCATCAGAGTCCGGGACAGTTACATCAACTACAACATCTGGTTCTTGCTACCAAGCTCCCGAGGCGTTAAAAGTGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGCTTGAAATGATCACGGGAAGAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTCGTAAACTGGATTCACTGGTGCATTGAAGAGAAGAAGCCACTTTCGGATGTATTGGACTCGTGTTTAGCACAAGATGCTGATAAAGAAGAGGAAATGATCGCGGTTTTGAAGATTGCAATGGCGTGTGTTCACAGCAGCCCGGAGAGAAGACCTTCAATGAGACACATATCTGATGCATTAGACAGACTGCAAGCTTCCTCTGAATGAACAATTGAAACAGAACCTTCAGGCTGGCTTCACATTGCTGCAAGGATTACAGCATCTAACCGATAACCATGAAGCACGATCACTGCTTGGTGCGCGATACATATTGACTAACAGTAGTAATCTCCACTTGTTTGTGAAGGAATATCTGTTTGAATATTGGCCTTTTTGCTCTCTGATAGCAAGCTTTTTCTTGTGTCTATTTG</genome_strand>
        <mrna_strand>CAAAGTAAGCAGGGCAGTGCACCATCAGATTCCGGGACAGTTACATCAACTGCAACTTC-GGTTCTTGCTATCAAGCTCCCGAGGCATTGAAAATGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGTTTGAAATGATCACGGGAAAAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTAGTAAACTGGATTCACTGGTGCATTGAAGAGAAGAAGCCACTTTCAGATGTATTGGACTCATATTTAGCTCAAGATGCTGATAAAGAAGAAGAAATGATCGTGGTTTTGAAGATTGCAATGGCGTGTGTTCACAGCAGCCCGGAGAGAAGACCTTCAATGAGACACATATCTGATGCATTAGAAAGACTGCAAGCTTCCTCTGAATGAACGATCGAAACAGAACC-T---GAAGGCTTCACATTGCAGTAAGGATCACAGCATCTAACCGATAACTATGAAGCACGATCACTGCTTGGCGCGCGATACATATTGACTAACAGTAGTAATCTCCAC-----T-T----G---AT-TGTTTGAATATTTGCCTTCTTGCTCTCTAATTGCAAGGTTTTTGTTGTGTCTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426663" ref_strand="+" ref_description="SGN-E426663 [STM-46-P20]">
      <seq>ccccacctaaggggtgttttaagagaacatacacttcatgttcatcaatagaaggaaacaacaaatagacacaacaaaaaccttgcttttagacagcaagaaggccaatattcaaacagacaagtggagattactactgttagtcaatatgatcgcacgccaagcagtgatcgtgttccatagttatcggttagatgctgtgatccttactgcaatgtgaagccttcaggttctgtttcgatcgttcattcagaggcagcttgcagtctttctaatgcatcagatatgtgtctcattgaaggtctcctctccgggctgctttgaacacacgccattgcaatcttcaaaaccgcgatcatttcctcttctttatcagcatcttgagctaaatatgagtccaatacatccgaaagtggcttcttctcttcaatgcaccagtgaatccagtttactagatccatttctgtagaacctacttggataatcggggttcttcccgtgatcatttcaagcaagatcactccatacgagtaaatgtcccatttttgtgatggtttcaccactttcaatgcctcgggagcttggtagcaagaaccagatgttgtagttgatgtaactgtcccggactctgatggtgcactgccttgtttactttgttgtggtttctcagaagtcatgtggttggattgcaacgtangagatgctccggctatattagcagacgtccaagtccaaagtcggagattttgggctccatgtcgtgcccaagtaatatattagatggctttagatcccatgaacatatttcttgggactgtactcatgtaaaataaccaaaccttttgcagtacccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14301" stop="15720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14611" g_stop="15420" g_length="810"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="857" r_length="789" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E426663" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14611" e_stop="15420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAGAAAAAGCTTGCTATCAGAGAGCAAAAAGGCCAATATTCAAACAGATATTCCTTCACAAACAAGTGGAGATTACTACTGTTAGTCAATATGTATCGCGCACCAAGCAGTGATCGTGCTTCATGGTTATCGGTTAGATGCTGTAATCCTTGCAGCAATGTGAAGCCAGCCTGAAGGTTCTGTTTCAATTGTTCATTCAGAGGAAGCTTGCAGTCTGTCTAATGCATCAGATATGTGTCTCATTGAAGGTCTTCTCTCCGGGCTGCTGTGAACACACGCCATTGCAATCTTCAAAACCGCGATCATTTCCTCTTCTTTATCAGCATCTTGTGCTAAACACGAGTCCAATACATCCGAAAGTGGCTTCTTCTCTTCAATGCACCAGTGAATCCAGTTTACGAGATCCATTTCAGTAGAACCTACTTGGATAATCGGGGTTCTTCCCGTGATCATTTCAAGCAAGATCACTCCGTACGAGTAAATGTCCCATTTTTGTGATGGTTTCACCACTTTTAACGCCTCGGGAGCTTGGTAGCAAGAACCAGATGTTGTAGTTGATGTAACTGTCCCGGACTCTGATGGCGCACTGCCTTGCTTACTTTGTTGTGGTTTCTCAGAGGTCATGTGGTTGGATTGCAACGTAGGGGATGTTCCAGCTATATTAGCAAGACGTCCAAGTCCAAAGTCCGAGATTTTGGGCTCCATGTCGTGCCCAAGTAATATATTAGAAGGCTTTAGATCGCCGTGAACATATTTCTTGGGACTGTACTCATGTAAATAAACCAAACCTTTTGCAGTTCCCTTCA</genome_strand>
        <mrna_strand>ACACAACAAAAACCTTGCTTTTAGACAGCAAGAAGGCCAATATTCAAACAG--------------ACAAGTGGAGATTACTACTGTTAGTCAATATG-ATCGCACGCCAAGCAGTGATCGTGTTCCATAGTTATCGGTTAGATGCTGTGATCCTTACTGCAATGTG-A---AGCCTTCAGGTTCTGTTTCGATCGTTCATTCAGAGGCAGCTTGCAGTCTTTCTAATGCATCAGATATGTGTCTCATTGAAGGTCTCCTCTCCGGGCTGCTTTGAACACACGCCATTGCAATCTTCAAAACCGCGATCATTTCCTCTTCTTTATCAGCATCTTGAGCTAAATATGAGTCCAATACATCCGAAAGTGGCTTCTTCTCTTCAATGCACCAGTGAATCCAGTTTACTAGATCCATTTCTGTAGAACCTACTTGGATAATCGGGGTTCTTCCCGTGATCATTTCAAGCAAGATCACTCCATACGAGTAAATGTCCCATTTTTGTGATGGTTTCACCACTTTCAATGCCTCGGGAGCTTGGTAGCAAGAACCAGATGTTGTAGTTGATGTAACTGTCCCGGACTCTGATGGTGCACTGCCTTGTTTACTTTGTTGTGGTTTCTCAGAAGTCATGTGGTTGGATTGCAACGTANGAGATGCTCCGGCTATATTAGC-AGACGTCCAAGTCCAAAGTCGGAGATTTTGGGCTCCATGTCGTGCCCAAGTAATATATTAGATGGCTTTAGATC-CCATGAACATATTTCTTGGGACTGTACTCATGTAAAATAACCAAACCTTTTGCAGTACCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240373" ref_strand="+" ref_description="SGN-E240373 [cLED-25-O4]">
      <seq>tcaactacaacatctggttcttgctaccaagctcccgaggcgttaaaagtggtgaaaccatcacaaaaatgggacatttactcgtacggagtgatcttgcttgaaatgatcacgggaagaaccccgattatccaagtaggttctactgaaatggatctcgtaaactggattcactggtgcattgaagagaagaagccactttcggatgtattggactcgtgtttagcacaagatgctgataaagaagaggaaatgatcgcggttttgaagattgcaatggcgtgtgttcacagcagcccggagagaagaccttcaatgagacacatatctgatgcattagacagactgcaagcttcctgtgaatgaacaattgaaacagaaccttcaggctggcttcacattgctgcaaggattacagcatctaaccgataaccatgaagcacgatcactgcttggtgcgcgatacatattgactaacagtagtaatctccacttgtttgtgaaggaatatctgtttgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15472" stop="14351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15172" g_stop="14651" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E240373" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15172" e_stop="14651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTACAACATCTGGTTCTTGCTACCAAGCTCCCGAGGCGTTAAAAGTGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGCTTGAAATGATCACGGGAAGAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTCGTAAACTGGATTCACTGGTGCATTGAAGAGAAGAAGCCACTTTCGGATGTATTGGACTCGTGTTTAGCACAAGATGCTGATAAAGAAGAGGAAATGATCGCGGTTTTGAAGATTGCAATGGCGTGTGTTCACAGCAGCCCGGAGAGAAGACCTTCAATGAGACACATATCTGATGCATTAGACAGACTGCAAGCTTCCTCTGAATGAACAATTGAAACAGAACCTTCAGGCTGGCTTCACATTGCTGCAAGGATTACAGCATCTAACCGATAACCATGAAGCACGATCACTGCTTGGTGCGCGATACATATTGACTAACAGTAGTAATCTCCACTTGTTTGTGAAGGAATATCTGTTTGAATA</genome_strand>
        <mrna_strand>TCAACTACAACATCTGGTTCTTGCTACCAAGCTCCCGAGGCGTTAAAAGTGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGCTTGAAATGATCACGGGAAGAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTCGTAAACTGGATTCACTGGTGCATTGAAGAGAAGAAGCCACTTTCGGATGTATTGGACTCGTGTTTAGCACAAGATGCTGATAAAGAAGAGGAAATGATCGCGGTTTTGAAGATTGCAATGGCGTGTGTTCACAGCAGCCCGGAGAGAAGACCTTCAATGAGACACATATCTGATGCATTAGACAGACTGCAAGCTTCCTGTGAATGAACAATTGAAACAGAACCTTCAGGCTGGCTTCACATTGCTGCAAGGATTACAGCATCTAACCGATAACCATGAAGCACGATCACTGCTTGGTGCGCGATACATATTGACTAACAGTAGTAATCTCCACTTGTTTGTGAAGGAATATCTGTTTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458379" ref_strand="+" ref_description="SGN-E458379 [cPRO-5-D23]">
      <seq>cgagaagctactgatatatgacttcattccaaatggaaaccttaccactgcaattcacggaaaacctggtatggtgtcatttacaccactttcgtggtccattcgactgaaaataatgaagggaactgcaaaaggtttggtttatttacatgagtacagtcccaagaaatatgttcatggtgatctaaagccatctaatatattacttgggcacgacatggagcccaaaatctccgactttggacttggacgtcttgctaatatagctggagcatcccctacgttgccatccaaccacatgacctctgagaaaccacaacaaagtaagcagggcagtgcaccatcagattccgggacagttacatcaactgcaacttctggttcttgctatcaagctcccgaggcattgaaaatggtgaaaccatcacaaaaatgggacatttactcgtacggagtgatcttgtttgaaatgatcacgggaaaaaccccgattatccaagtaggttctactgaaatggatctagtaaactggattcactggtgcattgaagagaagaagccactttcagatgtattggactcatatttagctcaagatgctgataaagagaagaaatgatcgtggttttgagattgcaatggcgtgtgttcacagcagcccggagagaagactttcatgagacacatatctgatgcattagaaagactgcaagcttcctctgaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15953" stop="14506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15654" g_stop="15596" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15595" i_stop="15478" i_length="118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15477" g_stop="14806" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="728" r_length="669" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E458379" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15654" e_stop="15596"/>
          <exon e_start="15477" e_stop="14806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGCTACTGATATATGACTTCATTCCAAATGGAAACCTTACCACTGCAATTCACGGTATGCTTCAATCTCAGGCTGTTGCCTTCTCGTTTATTGTTTTTTCTTTGATTCCCACAACTGTTTTATGCTTTCGTGATTATTAACGTGTCTATTCGCTTGTGTAATCAATTCTTAGGAAAACCTGGTATGGTGTCGTTTACACCGCTTTCATGGTCCATTCGACTGAAAATAATGAAGGGAACTGCAAAAGGTTTGGTTTATTTACATGAGTACAGTCCCAAGAAATATGTTCACGGCGATCTAAAGCCTTCTAATATATTACTTGGGCACGACATGGAGCCCAAAATCTCGGACTTTGGACTTGGACGTCTTGCTAATATAGCTGGAACATCCCCTACGTTGCAATCCAACCACATGACCTCTGAGAAACCACAACAAAGTAAGCAAGGCAGTGCGCCATCAGAGTCCGGGACAGTTACATCAACTACAACATCTGGTTCTTGCTACCAAGCTCCCGAGGCGTTAAAAGTGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGCTTGAAATGATCACGGGAAGAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTCGTAAACTGGATTCACTGGTGCATTGAAGAGAAGAAGCCACTTTCGGATGTATTGGACTCGTGTTTAGCACAAGATGCTGATAAAGAAGAGGAAATGATCGCGGTTTTGAAGATTGCAATGGCGTGTGTTCACAGCAGCCCGGAGAGAAGACCTTCAATGAGACACATATCTGATGCATTAGACAGACTGCAAGCTTCCTCTGAATGAA</genome_strand>
        <mrna_strand>CGAGAAGCTACTGATATATGACTTCATTCCAAATGGAAACCTTACCACTGCAATTCACG......................................................................................................................GAAAACCTGGTATGGTGTCATTTACACCACTTTCGTGGTCCATTCGACTGAAAATAATGAAGGGAACTGCAAAAGGTTTGGTTTATTTACATGAGTACAGTCCCAAGAAATATGTTCATGGTGATCTAAAGCCATCTAATATATTACTTGGGCACGACATGGAGCCCAAAATCTCCGACTTTGGACTTGGACGTCTTGCTAATATAGCTGGAGCATCCCCTACGTTGCCATCCAACCACATGACCTCTGAGAAACCACAACAAAGTAAGCAGGGCAGTGCACCATCAGATTCCGGGACAGTTACATCAACTGCAACTTCTGGTTCTTGCTATCAAGCTCCCGAGGCATTGAAAATGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGTTTGAAATGATCACGGGAAAAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTAGTAAACTGGATTCACTGGTGCATTGAAGAGAAGAAGCCACTTTCAGATGTATTGGACTCATATTTAGCTCAAGATGCTGATAAAG-AGAAGAAATGATCGTGGTTTTG-AGATTGCAATGGCGTGTGTTCACAGCAGCCCGGAGAGAAGACTTTC-ATGAGACACATATCTGATGCATTAGAAAGACTGCAAGCTTCCTCTGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429975" ref_strand="+" ref_description="SGN-E429975 [STM-52-P6]">
      <seq>cgagaagctactgatatatgacttcattccaaatggaaaccttaccactgcaattcacggaaaacctggtatggtgtcatttacaccactttcgtggtccattcgactgaaaataatgaagggaactgcaaaaggtttggtttatttacatgagtacagtcccaagaaatatgttcatggtgatctaaagccatctaatatattacttgggcacgacatggagcccaaaatctccgactttggacttggacgtcttgctaatatagctggagcatcccctacgttgccatccaaccacatgacctctgagaaaccacaacaaagtaagcagggcagtgcaccatcagattccgggacagttacatcaactgcaacttctggttcttgctatcaagctcccgaggcattgaaaatggtgaaaccatcacaaaaatgggacatttactcgtacggagtgatcttgtttgaaatgatcacgggaaaaaccccgattatccaagtaggttctactgaaatggatctagtaaactggattcactggtgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15953" stop="14690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15654" g_stop="15596" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15595" i_stop="15478" i_length="118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15477" g_stop="14990" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="547" r_length="488" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E429975" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15654" e_stop="15596"/>
          <exon e_start="15477" e_stop="14990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGCTACTGATATATGACTTCATTCCAAATGGAAACCTTACCACTGCAATTCACGGTATGCTTCAATCTCAGGCTGTTGCCTTCTCGTTTATTGTTTTTTCTTTGATTCCCACAACTGTTTTATGCTTTCGTGATTATTAACGTGTCTATTCGCTTGTGTAATCAATTCTTAGGAAAACCTGGTATGGTGTCGTTTACACCGCTTTCATGGTCCATTCGACTGAAAATAATGAAGGGAACTGCAAAAGGTTTGGTTTATTTACATGAGTACAGTCCCAAGAAATATGTTCACGGCGATCTAAAGCCTTCTAATATATTACTTGGGCACGACATGGAGCCCAAAATCTCGGACTTTGGACTTGGACGTCTTGCTAATATAGCTGGAACATCCCCTACGTTGCAATCCAACCACATGACCTCTGAGAAACCACAACAAAGTAAGCAAGGCAGTGCGCCATCAGAGTCCGGGACAGTTACATCAACTACAACATCTGGTTCTTGCTACCAAGCTCCCGAGGCGTTAAAAGTGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGCTTGAAATGATCACGGGAAGAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTCGTAAACTGGATTCACTGGTGCATT</genome_strand>
        <mrna_strand>CGAGAAGCTACTGATATATGACTTCATTCCAAATGGAAACCTTACCACTGCAATTCACG......................................................................................................................GAAAACCTGGTATGGTGTCATTTACACCACTTTCGTGGTCCATTCGACTGAAAATAATGAAGGGAACTGCAAAAGGTTTGGTTTATTTACATGAGTACAGTCCCAAGAAATATGTTCATGGTGATCTAAAGCCATCTAATATATTACTTGGGCACGACATGGAGCCCAAAATCTCCGACTTTGGACTTGGACGTCTTGCTAATATAGCTGGAGCATCCCCTACGTTGCCATCCAACCACATGACCTCTGAGAAACCACAACAAAGTAAGCAGGGCAGTGCACCATCAGATTCCGGGACAGTTACATCAACTGCAACTTCTGGTTCTTGCTATCAAGCTCCCGAGGCATTGAAAATGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGTTTGAAATGATCACGGGAAAAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTAGTAAACTGGATTCACTGGTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318250" ref_strand="+" ref_description="SGN-E318250 [cTOA-29-C22]">
      <seq>tcagagacgttatcggaaaatgttgaacaatatgatctagtggcactagataatcaagtggcatttgatcttgatgaacttctcaaggcatctgcatttgtccttggtaaaagtggtatcggcattgtgtacaaagttgtgctcgaagacgggcttaacttggctgtaaggagattaggcgagggtggttcacaaagatttaaggaattccagacggaggtcgaagcaattggaaaactgagacatcaaaatattgtgactcttcgtgcctattattggtctgtcgatgagaagctactgatatatgacttcattccaaatggaaaccttaccactgcaattcacggaaaacctggtatggtgtcgtttacaccgctttcatggtccattcgactgaaaataatgaagggaactgcaaaaggtttggtttatttacatgagtacagtcccaagaaatatgttcacggcgatctaaagccttctaatatattacttgggcacgacatggagcccaaaatctcggactttggacttggacgtcttgctaatatagctggaacatcccctacgttgcaatccaaccacatgacctctgagaaaccacaacaaagtaagcaaggcagtgcgccatcagagtccgggacagntacatcaactacaacatctggntcttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="16241" stop="14847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15941" g_stop="15596" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15595" i_stop="15478" i_length="118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15477" g_stop="15147" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="677" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E318250" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15941" e_stop="15596"/>
          <exon e_start="15477" e_stop="15147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGACGTTATCGGAAAATGTTGAACAATATGATCTAGTGGCACTAGATAATCAAGTGGCATTTGATCTTGATGAACTTCTCAAGGCATCTGCATTTGTCCTTGGTAAAAGTGGTATCGGCATTGTGTACAAAGTTGTGCTCGAAGACGGGCTTAACTTGGCTGTAAGGAGATTAGGCGAGGGTGGTTCACAAAGATTTAAGGAATTCCAGACGGAGGTCGAAGCAATTGGAAAACTGAGACATCAAAATATTGTGACTCTTCGTGCCTATTATTGGTCTGTCGATGAGAAGCTACTGATATATGACTTCATTCCAAATGGAAACCTTACCACTGCAATTCACGGTATGCTTCAATCTCAGGCTGTTGCCTTCTCGTTTATTGTTTTTTCTTTGATTCCCACAACTGTTTTATGCTTTCGTGATTATTAACGTGTCTATTCGCTTGTGTAATCAATTCTTAGGAAAACCTGGTATGGTGTCGTTTACACCGCTTTCATGGTCCATTCGACTGAAAATAATGAAGGGAACTGCAAAAGGTTTGGTTTATTTACATGAGTACAGTCCCAAGAAATATGTTCACGGCGATCTAAAGCCTTCTAATATATTACTTGGGCACGACATGGAGCCCAAAATCTCGGACTTTGGACTTGGACGTCTTGCTAATATAGCTGGAACATCCCCTACGTTGCAATCCAACCACATGACCTCTGAGAAACCACAACAAAGTAAGCAAGGCAGTGCGCCATCAGAGTCCGGGACAGTTACATCAACTACAACATCTGGTTCTTGCTA</genome_strand>
        <mrna_strand>TCAGAGACGTTATCGGAAAATGTTGAACAATATGATCTAGTGGCACTAGATAATCAAGTGGCATTTGATCTTGATGAACTTCTCAAGGCATCTGCATTTGTCCTTGGTAAAAGTGGTATCGGCATTGTGTACAAAGTTGTGCTCGAAGACGGGCTTAACTTGGCTGTAAGGAGATTAGGCGAGGGTGGTTCACAAAGATTTAAGGAATTCCAGACGGAGGTCGAAGCAATTGGAAAACTGAGACATCAAAATATTGTGACTCTTCGTGCCTATTATTGGTCTGTCGATGAGAAGCTACTGATATATGACTTCATTCCAAATGGAAACCTTACCACTGCAATTCACG......................................................................................................................GAAAACCTGGTATGGTGTCGTTTACACCGCTTTCATGGTCCATTCGACTGAAAATAATGAAGGGAACTGCAAAAGGTTTGGTTTATTTACATGAGTACAGTCCCAAGAAATATGTTCACGGCGATCTAAAGCCTTCTAATATATTACTTGGGCACGACATGGAGCCCAAAATCTCGGACTTTGGACTTGGACGTCTTGCTAATATAGCTGGAACATCCCCTACGTTGCAATCCAACCACATGACCTCTGAGAAACCACAACAAAGTAAGCAAGGCAGTGCGCCATCAGAGTCCGGGACAGNTACATCAACTACAACATCTGGNTCTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486718" ref_strand="+" ref_description="SGN-E486718 [cSTE-23-E5]">
      <seq>ctttcacactcttttttctctcttaagctccattcttggttatctggtgtacaaaagaggggtttgggggtaatttgtctgcattggaagaacttgatcttggattcaacaaatttgatggtaaaattccaagcgatttgggaaatttgtctaatttgcaaggaactgttgatttgtctcataatatgtttaatggttcgattccggctagtcttggtaatcttcctgagaaggtgtatattgatctgacttataacaatttgagtggtccaattccacaaaatggtgctctgattaacagaggacctactgcttttattggaaatcctgggctttgtggacctccgttgaaaaaccagtgttctgcgcaaagtgacgcaagttcaccgtcctcggaacctttcttgcctaataacgtacctcccttagatggtgctggaagggatgggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17521" stop="15839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17221" g_stop="17165" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17164" i_stop="16535" i_length="630">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.843" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16534" g_stop="16139" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="453" r_length="396" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E486718" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17221" e_stop="17165"/>
          <exon e_start="16534" e_stop="16139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACACTCTTTTTTCTCTCATAAGCTCCATTCTTGATTATCTGTTGTACAAAAGGTAAGGTCTTTGAGACACCCTTTTGCTCATTTCTCATTTTTTTCAGCTGTGTCACTGTTCTTGATTTCATCATATTTGTAGATAAAAAAAAAATGCAATCTTTTTTGTGTTTTAGCATTTTCTTGATTCTGTGTAGTTGTTGTGTTTTTGTTACTTCTTTGAATGATGAAGGGATAGCTCTTTGGTCATTTAAAAAGGGTATTGGACAAGACCCTGAAGGGTCACTTAAAAATTGGAACTTTTCTGATGAAACCCCTTGTTCTTGGAATGGTGTTACATGCAAAGACCTAAAAGTTGTATCTGTTAGTATACCTAGAAAGAAACTCACTGGGTTTCTTTCTTCTAGTCTTGGATCTCTTACTGAGCTTAGACATGTTAATTTAAGAAGTAATTTGTTTTCTGGTAGTTTGCCTGTTGAGCTTTTTGAGGTTCAAGGTTTGCAAAGTTTGGTTCTTTATGGGAATTCCTTTTCTGGGGTTATACCTTTTGAGGTTGGGAAGCTAAATTATCTTCAAACTTTGGATTTATCACAAAATTTCTTGAATGGGTCTGTGCCTATAACATTGCTTCAGTGTAAGAGATTGAAGGTTCTTGATTTAAGTCATAATAACTTTACTGGTGTTGTACCAGAAGGGTTTGGGGGTAATTTGTCTGCATTGGAAGAACTTAATCTTGGATTCAACAAATTTGGTGGTAAAATTCCAACTGATTTGGGAAATTTGTCTAATTTGAAAGGAACTGTTGATTTGTCTCATAATATGTTTAGTGGTTCAATTCCGGCTAGTCTTGGTAATCTTCCTGAGAAGGTGTATATTGATTTGACTTATAACAATTTGAGTGGTCCAATTCCACAAAATGGTGCTTTGATTAACAGAGGACCTACTGCTTTTATTGGAAATCTTGGGCTCTGTGGACCTCCATTGAAAAACCCGTGTTCTGCGCAAAGTGACGCGAGTTCACCGTCCTCGGAACCTTTCTTGCCTAATAACATACCTCCATTAGATGGTGCTGGAGGGGATGTGAATG</genome_strand>
        <mrna_strand>CTTTCACACTCTTTTTTCTCTCTTAAGCTCCATTCTTGGTTATCTGGTGTACAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGTTTGGGGGTAATTTGTCTGCATTGGAAGAACTTGATCTTGGATTCAACAAATTTGATGGTAAAATTCCAAGCGATTTGGGAAATTTGTCTAATTTGCAAGGAACTGTTGATTTGTCTCATAATATGTTTAATGGTTCGATTCCGGCTAGTCTTGGTAATCTTCCTGAGAAGGTGTATATTGATCTGACTTATAACAATTTGAGTGGTCCAATTCCACAAAATGGTGCTCTGATTAACAGAGGACCTACTGCTTTTATTGGAAATCCTGGGCTTTGTGGACCTCCGTTGAAAAACCAGTGTTCTGCGCAAAGTGACGCAAGTTCACCGTCCTCGGAACCTTTCTTGCCTAATAACGTACCTCCCTTAGATGGTGCTGGAAGGGATGGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483385" ref_strand="+" ref_description="SGN-E483385 [cSTE-9-K19]">
      <seq>gttttttttcccaaagttgagaaaaacattaatctattttcccaacgtctctttattttcttagctgaaatcaactttaccttttctcactctcaaaagtctcacctttcacactcttttttctctcttaagctccattcttggttatctggtgtacaaaaggtaaggtctttgaaacacccttttgctcatttttcatttttcagctgtcactgttcttgatttcatcatatttgtagataaaaatgcaatcttttttgtttttttgcattttcttgattctgtgtagctgtgtttttgttacttctttgaatgatgaaggaatagctctttggtcattcaaaaaaggtattggacaagaccctgaagggtcacttaaaaattggaacttttctgatgaaaccccttgttcttggaatggtgttacatgcaaagacctaaaagttgtatctgttagtatacctaaaaagaaactaactgggtttctttcttctagtcttggatctcttactgagcttagacatgttaatttgagaagtaatttgttttctggtagtttgcctgttgagctttttgaggttcaaggtttgcaaagttttggttctttatgggaattccttttgtggggttataccctattgagggttgggaagctaaattatcttcaaactttggatttatcacataatttcttgaatggggtctgtgcctataacattacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17628" stop="16295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17328" g_stop="16595" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E483385" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17328" e_stop="16595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTTTTCCCCAAAGTTGAGAAAAACATTAATCAATTTTCCCAACGTCTCTTTATTTGCTTAGCTGAAATCACCTTTACCTTTTCTCACTCTCAAAAGTCTCACCTTTCACACTCTTTTTTCTCTCATAAGCTCCATTCTTGATTATCTGTTGTACAAAAGGTAAGGTCTTTGAGACACCCTTTTGCTCATTTCTCATTTTTTTCAGCTGTGTCACTGTTCTTGATTTCATCATATTTGTAGATAAAAAAAAAATGCAATCTTTTTTGTGTTTTAGCATTTTCTTGATTCTGTGTAGTTGTTGTGTTTTTGTTACTTCTTTGAATGATGAAGGGATAGCTCTTTGGTCATTTAAAAAGGGTATTGGACAAGACCCTGAAGGGTCACTTAAAAATTGGAACTTTTCTGATGAAACCCCTTGTTCTTGGAATGGTGTTACATGCAAAGACCTAAAAGTTGTATCTGTTAGTATACCTAGAAAGAAACTCACTGGGTTTCTTTCTTCTAGTCTTGGATCTCTTACTGAGCTTAGACATGTTAATTTAAGAAGTAATTTGTTTTCTGGTAGTTTGCCTGTTGAGCTTTTTGAGGTTCAAGGTTTGCAAAG-TTTGGTTCTTTATGGGAATTCCTTTTCTGGGGTTATA-CCTTTTGAGG-TTGGGAAGCTAAATTATCTTCAAACTTTGGATTTATCACAAAATTTCTTGAAT-GGGTCTGTGCCTATAACATTGCTTC</genome_strand>
        <mrna_strand>GTTT-TTTTT-CCCAAAGTTGAGAAAAACATTAATCTATTTTCCCAACGTCTCTTTATTTTCTTAGCTGAAATCAACTTTACCTTTTCTCACTCTCAAAAGTCTCACCTTTCACACTCTTTTTTCTCTCTTAAGCTCCATTCTTGGTTATCTGGTGTACAAAAGGTAAGGTCTTTGAAACACCCTTTTGCTCATTTTTCA--TTTTTCAGC--TGTCACTGTTCTTGATTTCATCATATTTGTAGAT-----AAAAATGCAATCTTTTTTGTTTTTTTGCATTTTCTTGATTCTGTGTA---GCTGTGTTTTTGTTACTTCTTTGAATGATGAAGGAATAGCTCTTTGGTCATTCAAAAAAGGTATTGGACAAGACCCTGAAGGGTCACTTAAAAATTGGAACTTTTCTGATGAAACCCCTTGTTCTTGGAATGGTGTTACATGCAAAGACCTAAAAGTTGTATCTGTTAGTATACCTAAAAAGAAACTAACTGGGTTTCTTTCTTCTAGTCTTGGATCTCTTACTGAGCTTAGACATGTTAATTTGAGAAGTAATTTGTTTTCTGGTAGTTTGCCTGTTGAGCTTTTTGAGGTTCAAGGTTTGCAAAGTTTTGGTTCTTTATGGGAATTCCTTTTGTGGGGTTATACCCTATTGAGGGTTGGGAAGCTAAATTATCTTCAAACTTTGGATTTATCACATAATTTCTTGAATGGGGTCTGTGCCTATAACATTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426662" ref_strand="+" ref_description="SGN-E426662 [STM-46-P20]">
      <seq>gttttttttcccaaaagttgagaaaaacattaatctattttcccaacgtctctttattttcttagctgaaatcaactttaccttttctcactctcaaaagtctcacctttcacactcttttttctctcttaagctccattcttggttatctggtgtacaaaaggtaaggtctttgaaacacccttttgctcatttttcatttttcagctgtcactgttcttgatttcatcatatttgtagataaaaatgcaatcttttttgtttttttgcattttcttgattctgtgtagctgtgtttttgttacttctttgaatgatgaaggaatagctctttggtcattcaaaaaaggtattggacaagaccctgaagggtcacttaaaaattggaacttttctgatgaaaccccttgttcttggaatggtgttacatgcaaagacctaaaagttgtatctgttagtatacctaaaaagaaactaactgggtttctttcttctagtcttggatctcttactgagcttagacatgttaatttgagaagtaatttgttttctggtagtttgcctgttgagctttttgaggttcaagggttgcaaagtttgggtctttatgggaattcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17628" stop="16394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17328" g_stop="16694" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E426662" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17328" e_stop="16694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTTTTCCCCAAAGTTGAGAAAAACATTAATCAATTTTCCCAACGTCTCTTTATTTGCTTAGCTGAAATCACCTTTACCTTTTCTCACTCTCAAAAGTCTCACCTTTCACACTCTTTTTTCTCTCATAAGCTCCATTCTTGATTATCTGTTGTACAAAAGGTAAGGTCTTTGAGACACCCTTTTGCTCATTTCTCATTTTTTTCAGCTGTGTCACTGTTCTTGATTTCATCATATTTGTAGATAAAAAAAAAATGCAATCTTTTTTGTGTTTTAGCATTTTCTTGATTCTGTGTAGTTGTTGTGTTTTTGTTACTTCTTTGAATGATGAAGGGATAGCTCTTTGGTCATTTAAAAAGGGTATTGGACAAGACCCTGAAGGGTCACTTAAAAATTGGAACTTTTCTGATGAAACCCCTTGTTCTTGGAATGGTGTTACATGCAAAGACCTAAAAGTTGTATCTGTTAGTATACCTAGAAAGAAACTCACTGGGTTTCTTTCTTCTAGTCTTGGATCTCTTACTGAGCTTAGACATGTTAATTTAAGAAGTAATTTGTTTTCTGGTAGTTTGCCTGTTGAGCTTTTTGAGGTTCAAGGTTTGCAAAGTTTGGTTCTTTATGGGAATTCCTTTT</genome_strand>
        <mrna_strand>GTTT-TTTTTCCCAAAAGTTGAGAAAAACATTAATCTATTTTCCCAACGTCTCTTTATTTTCTTAGCTGAAATCAACTTTACCTTTTCTCACTCTCAAAAGTCTCACCTTTCACACTCTTTTTTCTCTCTTAAGCTCCATTCTTGGTTATCTGGTGTACAAAAGGTAAGGTCTTTGAAACACCCTTTTGCTCATTTTTCA--TTTTTCAGC--TGTCACTGTTCTTGATTTCATCATATTTGTAGAT-----AAAAATGCAATCTTTTTTGTTTTTTTGCATTTTCTTGATTCTGTGTA---GCTGTGTTTTTGTTACTTCTTTGAATGATGAAGGAATAGCTCTTTGGTCATTCAAAAAAGGTATTGGACAAGACCCTGAAGGGTCACTTAAAAATTGGAACTTTTCTGATGAAACCCCTTGTTCTTGGAATGGTGTTACATGCAAAGACCTAAAAGTTGTATCTGTTAGTATACCTAAAAAGAAACTAACTGGGTTTCTTTCTTCTAGTCTTGGATCTCTTACTGAGCTTAGACATGTTAATTTGAGAAGTAATTTGTTTTCTGGTAGTTTGCCTGTTGAGCTTTTTGAGGTTCAAGGGTTGCAAAGTTTGGGTCTTTATGGGAATTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450323" ref_strand="+" ref_description="SGN-E450323 [cSTS-9-C23]">
      <seq>cgatgcggcgacggcgacggcgacgatgaccgatagttgccgccgagctcttgtggaagctatacattcgtctcctactcaagctgttatttatctctccggcggagcctctcaggcgcctggggtggttgatgtcagttccgggagcatcgaacactgtgcttgaatctgtagttgcatattccagaatgtctatgattcaattacttggcaagggttcctgctcaagctgctagttcgcaaacggcggaggaaatggcattgttggcttataatagagcattaaagctttctaaaccaggttcaccagttctaggtgtgggttttactggtgccttggctagtgcacaaccaaaacgtggagatcataggtttcacgtgtcaaccagaacatctgaccggttttggacctcaacggttactttgactaagggcctgcgaactcgtgagcaggaagatggagtctcgagtcaatacttaatcaaggcaattgcaaatgctagcaaggttccaggaacttttgttccagacttgactgaatcagaaagtccagatgaatatgaaaagaaatttgatgaagaagaagagctaaagcaacttctcagtgggattatatgcttcaaagtgtatcctttctcaagtgacacgtctaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20977" stop="25124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21270" g_stop="21386" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21387" i_stop="21469" i_length="83">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21470" g_stop="21568" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="216" r_length="101" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21569" i_stop="21659" i_length="91">
            <donor d_prob="0.036" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21660" g_stop="21744" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="301" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21745" i_stop="22684" i_length="940">
            <donor d_prob="0.874" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22685" g_stop="22754" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="371" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22755" i_stop="23599" i_length="845">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.030" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23600" g_stop="23660" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="432" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23661" i_stop="23772" i_length="112">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23773" g_stop="23826" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="486" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23827" i_stop="24654" i_length="828">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24655" g_stop="24811" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="643" r_length="157" r_score="0.968"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24812" i_stop="24888" i_length="77">
            <donor d_prob="0.207" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24889" g_stop="24901" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="656" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E450323" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21270" e_stop="21386"/>
          <exon e_start="21470" e_stop="21568"/>
          <exon e_start="21660" e_stop="21744"/>
          <exon e_start="22685" e_stop="22754"/>
          <exon e_start="23600" e_stop="23660"/>
          <exon e_start="23773" e_stop="23826"/>
          <exon e_start="24655" e_stop="24811"/>
          <exon e_start="24889" e_stop="24901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAACGGCGACGGCGACGGCGACGATGACCGATAGTTGCCGCCGAGCTCTAGTGGAAGCTATACATTCGTCTCCTACTCAAGCTGTTATTTATCTTTCCGGCGGAGCCTCTCAGGTCTCTAGATTTTTTTTTGATAAGTTTGTTGTTTTAGCTGAATCTAACTGTTAACATCACTTTATGTTATGAAATTAGTACAGGCG-CTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAA-GGTAGTTTGATTTTCAAGTGTAATCTTTGATTTTGCAATTACAGCGATTTCACTGCTAAGAAATTGTGTTTCTCGTTTTTTTCCTGGAACAGGTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAGGTAGTAATTTTGAATTTATTGGAATTTTGTGTTTGATTGTGGATTTTATGGTGTTATCTTGTACTTTATCTCTTAGCTAAATGAATTTGGCCATACATTTCTAGAAATTTTCTAGTTCAGTTGAGAGATTTGAGAAAACTGTGTCTGTGTGAGCTCAAAGAATAATCAGTTCCAAGAAAAAAGGAGGTAGGTAAATAGTTTAAATATGCTAGGGATGTGATCATACTAATAATAAGACAAAAGATCTCATCAGAACTAGGAAGTTAAGCATGCATAGGCGAGTGTAATACTAAGGTGAAACATCAGGGGAAGTCCTCATGTGCATCTTTTTCTGAACCTTACTAGTTTAGGGCCTATTTTACTTGATTGATAGTTAATCATGTAGAGAACGATTAGAAAGAAAAAACTTTCGTGTAAAATTGATGTGGTTGGAAGACAATGAGCAGACGGTTCATATCCTAGATGACTGCTTGATTAATCAGGAGTGATTTATTTGATATATGTGTATGTAATAATTTGTATGCCATGCATAAATCATGAAGGTTTTCGGTTTCCTATTATGACAAGCTGTAATGACATTCTAGTGTGTGAAATTTGTGCTTGTTAATGAAGATGTATAAAGGCAATAGGTACAACCGAGAAGCCAAGCCATCCTTTCAGTAACTAGGTGTATCAGCATAAGTTTATTATTAGTCAAATCTAATAAATATTCTCTCTCACAAAATGGAGGCACCCTAATTTTATTCTTCCTCATTTTCATATTGGATTATGTGCATGGTCGTAAAACAGTGAGGTCACTTTGATTCAAAGTCATCTGGCTATTTTACACCTAGATGTGTATTACAAAGTTTCACCATTTATTATTTAGTAGTAACATTTTGTTCCTGGATATGTGTTGTTTTATTTAAATGACATGATTTCATTTTGTTTGATTGTACAGGTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAGGTATTCTTGTAGCATCAGTCAGTCTTTACCGATATATCTTTTCAGATTCTTATTCCCTTAGGAGCAACTTGCATTCAGGAATCATCAGTTTTGTTTCCTAGATTCACTAGGAGTATAAACTGGTTTTCTTTTAATGATTCACGTGAGGTTTCTATTTGATAAGAAGAGGTGACCATCCTGATTACCATTTGCCTTTACGATAACATGAAATGGATCAGATGAAGGCAAACCATAATAAATGCTAAGATGTATTTGTTTATTCCTCTTTGAAAAATGGAGCTGGTTGACTAAAGGGTAGTCATCCAAGCACAAGTTAATATTAATGATGGCGGTTTCCTGCTTGATCTTGATGTCTAGAATGTCGTAAAAATAACTAATTTTCTCGGTTGTTGAAGACATGCCAAAAGATTCTGCAGTCAGGAATAGTATATGTGTCCGTGTTGACGAAACTTATGCTAATATTTTATGTACATCCTACGTTTTAAGTTGGTATCAACAAAGCACAAATTTTGTTGACATCTTATATGTATGGACATTAAGAACAAGGATTCTTCTTTCTGAAAATGTGGTTGAGTTGTGTTCATATTAGAATCATTTCATCTATCTGTTGTATCCCCTAAAGGGAAGAATAAAAGCACCGAACTTTGCCTTTTTAATTAAGTTTGAAAGATCTGTATCCCTTCAAAGACACATGTGGACCATGTTTGGATCGCTACAAAGATGCCTTTTGCCCCAATTAATTGGTATTCCAAGCATTGGTATTTCCATTTGAGAACTTATTCCTCATTGAGTTGTACTTCAAAATTTGGATCTCTTTCTGAGCATGAGTAGTGCTTTATGAGTAGGTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAGGTATCATTCATGCATGTTTCTCTTTTAGTCATCTTTATCTTCTTTAAATTAGTATCTTCGGATTTCAATGACCGAAGTTCTGCTTTTGCTTAAACTGAATGGATGGATACAGGGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAGGTGTGTATAAAATTTTGATAGAATTTCTAAAAGAGGAAATAGAACATTTCATACACCCTTTTGGGTAATGAAACAAGTTCAACATACAACTGCACTGGTTAAATCAATTAAATATACATAACCTGAACGAAATGTATAGTGCATGGCCAATTTGGAAATTCACAGGTTCCAATTCTTTTTAGGTATTTATCTATTTTCATAGCCAATGCTAGATGCTACTTATTATAGTGTTCTGATGGGATTTGGTGCGTTATGCTGCTTATTATAGTGTTAGATGAATGTGTATATTGTATAACTGTGCTCCTTAACGTAAATAATCAAAACTTAAACATTTCCAGTTTTTCAGTCCAAGTTTTTAATTCTGCCTTTTAGGTATTTCCCCAATAGAATTCGCTAGTAGAAGCCAGACTTTATTGCATTATCTTGATATTAGGAGGGTTAAAGTTAAATGTGTTATGGAAGGTTACATTGAATGGGCTTGTTTCCTCTATCATTTATCCATGCTTGTTTGTCCGCTGAGATTATAATATTTTCTCTTGGTTTTGCAGCTATATATTTGTGTATTCTACAACTGAACAAGTCTATTAAGTGGATACACTTTTTGCTTGTTTGAGCACCATCGGGACTTTAAGACAATCACCGATAACCAGTAGAGTTTTAGTTCGAAGTGTGGGTTTGTAGATACCTAAAATGTAGCTGTCTGCAGTTGAAATTTTCTGTAGATCCTCTTTAACTCATTATTGAGTAGTACTTGCTAATCCATCTATGCTGGAACTTCCATCAAATCCACCCCGTAGATTCTTATATTAGCTCTGTCTTCTGTTTCAGGCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTGGTATGTGTTAATGCAATCAACATAGTCACATTCAGAGCCAACAATCCACTGCAGATGTTGATACAGGAATTTTGCAGACTCGTCTAATGT</genome_strand>
        <mrna_strand>CGAT--GCGGCGACGGCGACGGCGACGATGACCGATAGTTGCCGCCGAGCTCTTGTGGAAGCTATACATTCGTCTCCTACTCAAGCTGTTATTTATCTCTCCGGCGGAGCCTCTCAG...................................................................................GCGCCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTGCATATTCCAGAATGTCTATGATTCAATTACTTGGCAAGG...........................................................................................GTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTATAATAGAGCATTAAAGCTTTCTAAACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCAACGGTTACTTTGACTAAG................................................................................................................GGCCTGCGAACTCGTGAGCAGGAAGATGGAGTCTCGAGTCAATACTTAATCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGCAAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAAGTCCAGATGAATATGAAAAGAAATTTGATGAAGAAGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTG.............................................................................ACACGTCTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423840" ref_strand="+" ref_description="SGN-E423840 [STM-42-L19]">
      <seq>tgacggcgacggcgacggcgacgatgaccgatagttgccgccgagctcttgtggaagctatacattcgtctcctactcaagctgttatttatctctccggcggagcctctcaggcgctggggtggttgatgtcagttccgggagcatcgaacactgtgcttgaatctgtagttgcatattccagaatgtctatgattcaattacttggcaaggttcctgctcaagctgctagttcgcaaacggcggaggaaatggcattgttggcttataatagagcattaaagctttctaaaccaggttcaccagttctaggtgtgggttttactggtgccttggctagtgcacaaccaaaacgtggagatcataggtttcacgtgtcaaccagaacatctgaccggttttggacctcaacggttactttgactaagggcctgcgaactcgtgagcaggaagatggagtctcgagtcaatacttaatcaagggcattgcaaatgctagcaaggttccaggaacttttgttccagacttgactgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20976" stop="25009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21274" g_stop="21386" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21387" i_stop="21469" i_length="83">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21470" g_stop="21568" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="212" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21569" i_stop="21659" i_length="91">
            <donor d_prob="0.036" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21660" g_stop="21744" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="297" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21745" i_stop="22684" i_length="940">
            <donor d_prob="0.874" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22685" g_stop="22754" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="367" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22755" i_stop="23599" i_length="845">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.030" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23600" g_stop="23660" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="428" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23661" i_stop="23772" i_length="112">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23773" g_stop="23826" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="482" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23827" i_stop="24654" i_length="828">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24655" g_stop="24709" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="537" r_length="55" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E423840" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21274" e_stop="21386"/>
          <exon e_start="21470" e_stop="21568"/>
          <exon e_start="21660" e_stop="21744"/>
          <exon e_start="22685" e_stop="22754"/>
          <exon e_start="23600" e_stop="23660"/>
          <exon e_start="23773" e_stop="23826"/>
          <exon e_start="24655" e_stop="24709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGGCGACGGCGACGGCGACGATGACCGATAGTTGCCGCCGAGCTCTAGTGGAAGCTATACATTCGTCTCCTACTCAAGCTGTTATTTATCTTTCCGGCGGAGCCTCTCAGGTCTCTAGATTTTTTTTTGATAAGTTTGTTGTTTTAGCTGAATCTAACTGTTAACATCACTTTATGTTATGAAATTAGTACAGGCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAGGTAGTTTGATTTTCAAGTGTAATCTTTGATTTTGCAATTACAGCGATTTCACTGCTAAGAAATTGTGTTTCTCGTTTTTTTCCTGGAACAGGTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAGGTAGTAATTTTGAATTTATTGGAATTTTGTGTTTGATTGTGGATTTTATGGTGTTATCTTGTACTTTATCTCTTAGCTAAATGAATTTGGCCATACATTTCTAGAAATTTTCTAGTTCAGTTGAGAGATTTGAGAAAACTGTGTCTGTGTGAGCTCAAAGAATAATCAGTTCCAAGAAAAAAGGAGGTAGGTAAATAGTTTAAATATGCTAGGGATGTGATCATACTAATAATAAGACAAAAGATCTCATCAGAACTAGGAAGTTAAGCATGCATAGGCGAGTGTAATACTAAGGTGAAACATCAGGGGAAGTCCTCATGTGCATCTTTTTCTGAACCTTACTAGTTTAGGGCCTATTTTACTTGATTGATAGTTAATCATGTAGAGAACGATTAGAAAGAAAAAACTTTCGTGTAAAATTGATGTGGTTGGAAGACAATGAGCAGACGGTTCATATCCTAGATGACTGCTTGATTAATCAGGAGTGATTTATTTGATATATGTGTATGTAATAATTTGTATGCCATGCATAAATCATGAAGGTTTTCGGTTTCCTATTATGACAAGCTGTAATGACATTCTAGTGTGTGAAATTTGTGCTTGTTAATGAAGATGTATAAAGGCAATAGGTACAACCGAGAAGCCAAGCCATCCTTTCAGTAACTAGGTGTATCAGCATAAGTTTATTATTAGTCAAATCTAATAAATATTCTCTCTCACAAAATGGAGGCACCCTAATTTTATTCTTCCTCATTTTCATATTGGATTATGTGCATGGTCGTAAAACAGTGAGGTCACTTTGATTCAAAGTCATCTGGCTATTTTACACCTAGATGTGTATTACAAAGTTTCACCATTTATTATTTAGTAGTAACATTTTGTTCCTGGATATGTGTTGTTTTATTTAAATGACATGATTTCATTTTGTTTGATTGTACAGGTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAGGTATTCTTGTAGCATCAGTCAGTCTTTACCGATATATCTTTTCAGATTCTTATTCCCTTAGGAGCAACTTGCATTCAGGAATCATCAGTTTTGTTTCCTAGATTCACTAGGAGTATAAACTGGTTTTCTTTTAATGATTCACGTGAGGTTTCTATTTGATAAGAAGAGGTGACCATCCTGATTACCATTTGCCTTTACGATAACATGAAATGGATCAGATGAAGGCAAACCATAATAAATGCTAAGATGTATTTGTTTATTCCTCTTTGAAAAATGGAGCTGGTTGACTAAAGGGTAGTCATCCAAGCACAAGTTAATATTAATGATGGCGGTTTCCTGCTTGATCTTGATGTCTAGAATGTCGTAAAAATAACTAATTTTCTCGGTTGTTGAAGACATGCCAAAAGATTCTGCAGTCAGGAATAGTATATGTGTCCGTGTTGACGAAACTTATGCTAATATTTTATGTACATCCTACGTTTTAAGTTGGTATCAACAAAGCACAAATTTTGTTGACATCTTATATGTATGGACATTAAGAACAAGGATTCTTCTTTCTGAAAATGTGGTTGAGTTGTGTTCATATTAGAATCATTTCATCTATCTGTTGTATCCCCTAAAGGGAAGAATAAAAGCACCGAACTTTGCCTTTTTAATTAAGTTTGAAAGATCTGTATCCCTTCAAAGACACATGTGGACCATGTTTGGATCGCTACAAAGATGCCTTTTGCCCCAATTAATTGGTATTCCAAGCATTGGTATTTCCATTTGAGAACTTATTCCTCATTGAGTTGTACTTCAAAATTTGGATCTCTTTCTGAGCATGAGTAGTGCTTTATGAGTAGGTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAGGTATCATTCATGCATGTTTCTCTTTTAGTCATCTTTATCTTCTTTAAATTAGTATCTTCGGATTTCAATGACCGAAGTTCTGCTTTTGCTTAAACTGAATGGATGGATACAGGGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAGGTGTGTATAAAATTTTGATAGAATTTCTAAAAGAGGAAATAGAACATTTCATACACCCTTTTGGGTAATGAAACAAGTTCAACATACAACTGCACTGGTTAAATCAATTAAATATACATAACCTGAACGAAATGTATAGTGCATGGCCAATTTGGAAATTCACAGGTTCCAATTCTTTTTAGGTATTTATCTATTTTCATAGCCAATGCTAGATGCTACTTATTATAGTGTTCTGATGGGATTTGGTGCGTTATGCTGCTTATTATAGTGTTAGATGAATGTGTATATTGTATAACTGTGCTCCTTAACGTAAATAATCAAAACTTAAACATTTCCAGTTTTTCAGTCCAAGTTTTTAATTCTGCCTTTTAGGTATTTCCCCAATAGAATTCGCTAGTAGAAGCCAGACTTTATTGCATTATCTTGATATTAGGAGGGTTAAAGTTAAATGTGTTATGGAAGGTTACATTGAATGGGCTTGTTTCCTCTATCATTTATCCATGCTTGTTTGTCCGCTGAGATTATAATATTTTCTCTTGGTTTTGCAGCTATATATTTGTGTATTCTACAACTGAACAAGTCTATTAAGTGGATACACTTTTTGCTTGTTTGAGCACCATCGGGACTTTAAGACAATCACCGATAACCAGTAGAGTTTTAGTTCGAAGTGTGGGTTTGTAGATACCTAAAATGTAGCTGTCTGCAGTTGAAATTTTCTGTAGATCCTCTTTAACTCATTATTGAGTAGTACTTGCTAATCCATCTATGCTGGAACTTCCATCAAATCCACCCCGTAGATTCTTATATTAGCTCTGTCTTCTGTTTCAGGCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAAT</genome_strand>
        <mrna_strand>TGACGGCGACGGCGACGGCGACGATGACCGATAGTTGCCGCCGAGCTCTTGTGGAAGCTATACATTCGTCTCCTACTCAAGCTGTTATTTATCTCTCCGGCGGAGCCTCTCAG...................................................................................GCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTGCATATTCCAGAATGTCTATGATTCAATTACTTGGCAAG...........................................................................................GTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTATAATAGAGCATTAAAGCTTTCTAAACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCAACGGTTACTTTGACTAAG................................................................................................................GGCCTGCGAACTCGTGAGCAGGAAGATGGAGTCTCGAGTCAATACTTAATCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTGCAAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327276" ref_strand="+" ref_description="SGN-E327276 [cTOC-19-B17]">
      <seq>aacggcgacggcgacggcgacgatgaccgatagttgccgccgagctctagtggaagctatacattcgtctcctactcaagctgttatttatctttccggcggagcctctcaggcgctggggtggttgatgtcagttccgggagcatcgaacactgtgcttgaatctgtagttacatattccagaatgtctatgattcaattacttggcaaggttcctgctcaagctgctagttcgcaaacggcggaggaaatggcattgttggcttacaatagagcattaaagctttctaaaccaggttcaccagttctaggtgtgggttttactggtgccttggctagtgcacaaccaaaacgtggagatcataggtttcacgtgtcaaccagaacatctgaccggttttggacctcgacagttactttgactaagggtctgcgaactcgtgagcaggaagatggagtttcgagtcaatacttaatcaaggcaattgcgaatgctagcaaggttccaggaacttttgttccagacttgactgaatcagaagttccagatgaatatgaaaagaattttgatgaagaggaagagctaaagcaacttctcagtgggattatatgcttcaaagtgtatcctttctcaagtgactcgtctaatgtagagaggaaaataatcctgtctggttcctttaatccattgcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20975" stop="25247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21275" g_stop="21386" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21387" i_stop="21469" i_length="83">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21470" g_stop="21568" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="211" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21569" i_stop="21659" i_length="91">
            <donor d_prob="0.036" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21660" g_stop="21744" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="296" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21745" i_stop="22684" i_length="940">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22685" g_stop="22754" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="366" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22755" i_stop="23599" i_length="845">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.030" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23600" g_stop="23660" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="427" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23661" i_stop="23772" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23773" g_stop="23826" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="481" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23827" i_stop="24654" i_length="828">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24655" g_stop="24811" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="638" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24812" i_stop="24888" i_length="77">
            <donor d_prob="0.207" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24889" g_stop="24947" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="697" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E327276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21275" e_stop="21386"/>
          <exon e_start="21470" e_stop="21568"/>
          <exon e_start="21660" e_stop="21744"/>
          <exon e_start="22685" e_stop="22754"/>
          <exon e_start="23600" e_stop="23660"/>
          <exon e_start="23773" e_stop="23826"/>
          <exon e_start="24655" e_stop="24811"/>
          <exon e_start="24889" e_stop="24947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGCGACGGCGACGGCGACGATGACCGATAGTTGCCGCCGAGCTCTAGTGGAAGCTATACATTCGTCTCCTACTCAAGCTGTTATTTATCTTTCCGGCGGAGCCTCTCAGGTCTCTAGATTTTTTTTTGATAAGTTTGTTGTTTTAGCTGAATCTAACTGTTAACATCACTTTATGTTATGAAATTAGTACAGGCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAGGTAGTTTGATTTTCAAGTGTAATCTTTGATTTTGCAATTACAGCGATTTCACTGCTAAGAAATTGTGTTTCTCGTTTTTTTCCTGGAACAGGTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAGGTAGTAATTTTGAATTTATTGGAATTTTGTGTTTGATTGTGGATTTTATGGTGTTATCTTGTACTTTATCTCTTAGCTAAATGAATTTGGCCATACATTTCTAGAAATTTTCTAGTTCAGTTGAGAGATTTGAGAAAACTGTGTCTGTGTGAGCTCAAAGAATAATCAGTTCCAAGAAAAAAGGAGGTAGGTAAATAGTTTAAATATGCTAGGGATGTGATCATACTAATAATAAGACAAAAGATCTCATCAGAACTAGGAAGTTAAGCATGCATAGGCGAGTGTAATACTAAGGTGAAACATCAGGGGAAGTCCTCATGTGCATCTTTTTCTGAACCTTACTAGTTTAGGGCCTATTTTACTTGATTGATAGTTAATCATGTAGAGAACGATTAGAAAGAAAAAACTTTCGTGTAAAATTGATGTGGTTGGAAGACAATGAGCAGACGGTTCATATCCTAGATGACTGCTTGATTAATCAGGAGTGATTTATTTGATATATGTGTATGTAATAATTTGTATGCCATGCATAAATCATGAAGGTTTTCGGTTTCCTATTATGACAAGCTGTAATGACATTCTAGTGTGTGAAATTTGTGCTTGTTAATGAAGATGTATAAAGGCAATAGGTACAACCGAGAAGCCAAGCCATCCTTTCAGTAACTAGGTGTATCAGCATAAGTTTATTATTAGTCAAATCTAATAAATATTCTCTCTCACAAAATGGAGGCACCCTAATTTTATTCTTCCTCATTTTCATATTGGATTATGTGCATGGTCGTAAAACAGTGAGGTCACTTTGATTCAAAGTCATCTGGCTATTTTACACCTAGATGTGTATTACAAAGTTTCACCATTTATTATTTAGTAGTAACATTTTGTTCCTGGATATGTGTTGTTTTATTTAAATGACATGATTTCATTTTGTTTGATTGTACAGGTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAGGTATTCTTGTAGCATCAGTCAGTCTTTACCGATATATCTTTTCAGATTCTTATTCCCTTAGGAGCAACTTGCATTCAGGAATCATCAGTTTTGTTTCCTAGATTCACTAGGAGTATAAACTGGTTTTCTTTTAATGATTCACGTGAGGTTTCTATTTGATAAGAAGAGGTGACCATCCTGATTACCATTTGCCTTTACGATAACATGAAATGGATCAGATGAAGGCAAACCATAATAAATGCTAAGATGTATTTGTTTATTCCTCTTTGAAAAATGGAGCTGGTTGACTAAAGGGTAGTCATCCAAGCACAAGTTAATATTAATGATGGCGGTTTCCTGCTTGATCTTGATGTCTAGAATGTCGTAAAAATAACTAATTTTCTCGGTTGTTGAAGACATGCCAAAAGATTCTGCAGTCAGGAATAGTATATGTGTCCGTGTTGACGAAACTTATGCTAATATTTTATGTACATCCTACGTTTTAAGTTGGTATCAACAAAGCACAAATTTTGTTGACATCTTATATGTATGGACATTAAGAACAAGGATTCTTCTTTCTGAAAATGTGGTTGAGTTGTGTTCATATTAGAATCATTTCATCTATCTGTTGTATCCCCTAAAGGGAAGAATAAAAGCACCGAACTTTGCCTTTTTAATTAAGTTTGAAAGATCTGTATCCCTTCAAAGACACATGTGGACCATGTTTGGATCGCTACAAAGATGCCTTTTGCCCCAATTAATTGGTATTCCAAGCATTGGTATTTCCATTTGAGAACTTATTCCTCATTGAGTTGTACTTCAAAATTTGGATCTCTTTCTGAGCATGAGTAGTGCTTTATGAGTAGGTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAGGTATCATTCATGCATGTTTCTCTTTTAGTCATCTTTATCTTCTTTAAATTAGTATCTTCGGATTTCAATGACCGAAGTTCTGCTTTTGCTTAAACTGAATGGATGGATACAGGGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAGGTGTGTATAAAATTTTGATAGAATTTCTAAAAGAGGAAATAGAACATTTCATACACCCTTTTGGGTAATGAAACAAGTTCAACATACAACTGCACTGGTTAAATCAATTAAATATACATAACCTGAACGAAATGTATAGTGCATGGCCAATTTGGAAATTCACAGGTTCCAATTCTTTTTAGGTATTTATCTATTTTCATAGCCAATGCTAGATGCTACTTATTATAGTGTTCTGATGGGATTTGGTGCGTTATGCTGCTTATTATAGTGTTAGATGAATGTGTATATTGTATAACTGTGCTCCTTAACGTAAATAATCAAAACTTAAACATTTCCAGTTTTTCAGTCCAAGTTTTTAATTCTGCCTTTTAGGTATTTCCCCAATAGAATTCGCTAGTAGAAGCCAGACTTTATTGCATTATCTTGATATTAGGAGGGTTAAAGTTAAATGTGTTATGGAAGGTTACATTGAATGGGCTTGTTTCCTCTATCATTTATCCATGCTTGTTTGTCCGCTGAGATTATAATATTTTCTCTTGGTTTTGCAGCTATATATTTGTGTATTCTACAACTGAACAAGTCTATTAAGTGGATACACTTTTTGCTTGTTTGAGCACCATCGGGACTTTAAGACAATCACCGATAACCAGTAGAGTTTTAGTTCGAAGTGTGGGTTTGTAGATACCTAAAATGTAGCTGTCTGCAGTTGAAATTTTCTGTAGATCCTCTTTAACTCATTATTGAGTAGTACTTGCTAATCCATCTATGCTGGAACTTCCATCAAATCCACCCCGTAGATTCTTATATTAGCTCTGTCTTCTGTTTCAGGCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTGGTATGTGTTAATGCAATCAACATAGTCACATTCAGAGCCAACAATCCACTGCAGATGTTGATACAGGAATTTTGCAGACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGAT</genome_strand>
        <mrna_strand>AACGGCGACGGCGACGGCGACGATGACCGATAGTTGCCGCCGAGCTCTAGTGGAAGCTATACATTCGTCTCCTACTCAAGCTGTTATTTATCTTTCCGGCGGAGCCTCTCAG...................................................................................GCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAG...........................................................................................GTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAG................................................................................................................GGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTG.............................................................................ACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332205" ref_strand="+" ref_description="SGN-E332205 [cTOD-16-P16]">
      <seq>ggcgacgatgaccgatagttgccgccgagctctagtggaagctatacattcgtctcctactcaagctgttatttatctttccggcggagcctctcaggcgctggggtggttgatgtcagttccgggagcatcgaacactgtgcttgaatctgtagttacatattccagaatgtctatgattcaattacttggcaaggttcctgctcaagctgctagttcgcaaacggcggaggaaatggcattgttggcttacaatagagcattaaagctttctaaaccaggttcaccagttctaggtgtgggttttactggtgccttggctagtgcacaaccaaaacgtggagatcataggtttcacgtgtcaaccagaacatctgaccggttttggacctcgacagttactttgactaagggtctgcgaactcgtgagcaggaagatggagtttcgagtcaatacttaatcaaggcaattgcgaatgctagcaaggttccaggaacttttgttccagacttgactgaatcagaagttccagatgaatatgaaaagaattttgatgaagaggaagagctaaagcaacttctcagtgggattatatgcttcaaagtgtatccttttctcagtgactcgtctaatgtagagaggaaaataatcctgtctggttcctttatccattgcatgatggtcaccttaagctcgtggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20990" stop="25270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21290" g_stop="21386" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21387" i_stop="21469" i_length="83">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21470" g_stop="21568" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="196" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21569" i_stop="21659" i_length="91">
            <donor d_prob="0.036" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21660" g_stop="21744" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="281" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21745" i_stop="22684" i_length="940">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22685" g_stop="22754" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="351" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22755" i_stop="23599" i_length="845">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.030" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23600" g_stop="23660" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="412" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23661" i_stop="23772" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23773" g_stop="23826" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="466" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23827" i_stop="24654" i_length="828">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24655" g_stop="24811" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="623" r_length="157" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24812" i_stop="24888" i_length="77">
            <donor d_prob="0.207" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24889" g_stop="24970" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="704" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E332205" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21290" e_stop="21386"/>
          <exon e_start="21470" e_stop="21568"/>
          <exon e_start="21660" e_stop="21744"/>
          <exon e_start="22685" e_stop="22754"/>
          <exon e_start="23600" e_stop="23660"/>
          <exon e_start="23773" e_stop="23826"/>
          <exon e_start="24655" e_stop="24811"/>
          <exon e_start="24889" e_stop="24970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGACGATGACCGATAGTTGCCGCCGAGCTCTAGTGGAAGCTATACATTCGTCTCCTACTCAAGCTGTTATTTATCTTTCCGGCGGAGCCTCTCAGGTCTCTAGATTTTTTTTTGATAAGTTTGTTGTTTTAGCTGAATCTAACTGTTAACATCACTTTATGTTATGAAATTAGTACAGGCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAGGTAGTTTGATTTTCAAGTGTAATCTTTGATTTTGCAATTACAGCGATTTCACTGCTAAGAAATTGTGTTTCTCGTTTTTTTCCTGGAACAGGTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAGGTAGTAATTTTGAATTTATTGGAATTTTGTGTTTGATTGTGGATTTTATGGTGTTATCTTGTACTTTATCTCTTAGCTAAATGAATTTGGCCATACATTTCTAGAAATTTTCTAGTTCAGTTGAGAGATTTGAGAAAACTGTGTCTGTGTGAGCTCAAAGAATAATCAGTTCCAAGAAAAAAGGAGGTAGGTAAATAGTTTAAATATGCTAGGGATGTGATCATACTAATAATAAGACAAAAGATCTCATCAGAACTAGGAAGTTAAGCATGCATAGGCGAGTGTAATACTAAGGTGAAACATCAGGGGAAGTCCTCATGTGCATCTTTTTCTGAACCTTACTAGTTTAGGGCCTATTTTACTTGATTGATAGTTAATCATGTAGAGAACGATTAGAAAGAAAAAACTTTCGTGTAAAATTGATGTGGTTGGAAGACAATGAGCAGACGGTTCATATCCTAGATGACTGCTTGATTAATCAGGAGTGATTTATTTGATATATGTGTATGTAATAATTTGTATGCCATGCATAAATCATGAAGGTTTTCGGTTTCCTATTATGACAAGCTGTAATGACATTCTAGTGTGTGAAATTTGTGCTTGTTAATGAAGATGTATAAAGGCAATAGGTACAACCGAGAAGCCAAGCCATCCTTTCAGTAACTAGGTGTATCAGCATAAGTTTATTATTAGTCAAATCTAATAAATATTCTCTCTCACAAAATGGAGGCACCCTAATTTTATTCTTCCTCATTTTCATATTGGATTATGTGCATGGTCGTAAAACAGTGAGGTCACTTTGATTCAAAGTCATCTGGCTATTTTACACCTAGATGTGTATTACAAAGTTTCACCATTTATTATTTAGTAGTAACATTTTGTTCCTGGATATGTGTTGTTTTATTTAAATGACATGATTTCATTTTGTTTGATTGTACAGGTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAGGTATTCTTGTAGCATCAGTCAGTCTTTACCGATATATCTTTTCAGATTCTTATTCCCTTAGGAGCAACTTGCATTCAGGAATCATCAGTTTTGTTTCCTAGATTCACTAGGAGTATAAACTGGTTTTCTTTTAATGATTCACGTGAGGTTTCTATTTGATAAGAAGAGGTGACCATCCTGATTACCATTTGCCTTTACGATAACATGAAATGGATCAGATGAAGGCAAACCATAATAAATGCTAAGATGTATTTGTTTATTCCTCTTTGAAAAATGGAGCTGGTTGACTAAAGGGTAGTCATCCAAGCACAAGTTAATATTAATGATGGCGGTTTCCTGCTTGATCTTGATGTCTAGAATGTCGTAAAAATAACTAATTTTCTCGGTTGTTGAAGACATGCCAAAAGATTCTGCAGTCAGGAATAGTATATGTGTCCGTGTTGACGAAACTTATGCTAATATTTTATGTACATCCTACGTTTTAAGTTGGTATCAACAAAGCACAAATTTTGTTGACATCTTATATGTATGGACATTAAGAACAAGGATTCTTCTTTCTGAAAATGTGGTTGAGTTGTGTTCATATTAGAATCATTTCATCTATCTGTTGTATCCCCTAAAGGGAAGAATAAAAGCACCGAACTTTGCCTTTTTAATTAAGTTTGAAAGATCTGTATCCCTTCAAAGACACATGTGGACCATGTTTGGATCGCTACAAAGATGCCTTTTGCCCCAATTAATTGGTATTCCAAGCATTGGTATTTCCATTTGAGAACTTATTCCTCATTGAGTTGTACTTCAAAATTTGGATCTCTTTCTGAGCATGAGTAGTGCTTTATGAGTAGGTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAGGTATCATTCATGCATGTTTCTCTTTTAGTCATCTTTATCTTCTTTAAATTAGTATCTTCGGATTTCAATGACCGAAGTTCTGCTTTTGCTTAAACTGAATGGATGGATACAGGGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAGGTGTGTATAAAATTTTGATAGAATTTCTAAAAGAGGAAATAGAACATTTCATACACCCTTTTGGGTAATGAAACAAGTTCAACATACAACTGCACTGGTTAAATCAATTAAATATACATAACCTGAACGAAATGTATAGTGCATGGCCAATTTGGAAATTCACAGGTTCCAATTCTTTTTAGGTATTTATCTATTTTCATAGCCAATGCTAGATGCTACTTATTATAGTGTTCTGATGGGATTTGGTGCGTTATGCTGCTTATTATAGTGTTAGATGAATGTGTATATTGTATAACTGTGCTCCTTAACGTAAATAATCAAAACTTAAACATTTCCAGTTTTTCAGTCCAAGTTTTTAATTCTGCCTTTTAGGTATTTCCCCAATAGAATTCGCTAGTAGAAGCCAGACTTTATTGCATTATCTTGATATTAGGAGGGTTAAAGTTAAATGTGTTATGGAAGGTTACATTGAATGGGCTTGTTTCCTCTATCATTTATCCATGCTTGTTTGTCCGCTGAGATTATAATATTTTCTCTTGGTTTTGCAGCTATATATTTGTGTATTCTACAACTGAACAAGTCTATTAAGTGGATACACTTTTTGCTTGTTTGAGCACCATCGGGACTTTAAGACAATCACCGATAACCAGTAGAGTTTTAGTTCGAAGTGTGGGTTTGTAGATACCTAAAATGTAGCTGTCTGCAGTTGAAATTTTCTGTAGATCCTCTTTAACTCATTATTGAGTAGTACTTGCTAATCCATCTATGCTGGAACTTCCATCAAATCCACCCCGTAGATTCTTATATTAGCTCTGTCTTCTGTTTCAGGCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCC-TTTCTCAAGTGGTATGTGTTAATGCAATCAACATAGTCACATTCAGAGCCAACAATCCACTGCAGATGTTGATACAGGAATTTTGCAGACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGATGGTCACCTTAAGCTCGTGGAAAT</genome_strand>
        <mrna_strand>GGCGACGATGACCGATAGTTGCCGCCGAGCTCTAGTGGAAGCTATACATTCGTCTCCTACTCAAGCTGTTATTTATCTTTCCGGCGGAGCCTCTCAG...................................................................................GCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAG...........................................................................................GTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAG................................................................................................................GGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTTCTC-AGTG.............................................................................ACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTT-ATCCATTGCATGATGGTCACCTTAAGCTCGTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727043" ref_strand="+" ref_description="SGN-E727043 [LA13CC08]">
      <seq>gcctctcaggcgctggggtggttgatgtcagttccgggagcatcgaacactgtgcttgaatctgtagttacatattccagaatgtctatgattcaattacttggcaaggttcctgctcaagctgctagttcgcaaacggcggaggaaatggcattgttggcttacaatagagcattaaagctttctaaaccaggttcaccagttctaggtgtgggttttactggtgccttggctagtgcacaaccaaaacgtggagatcataggtttcacgtgtcaaccagaacatctgaccggttttggacctcgacagttactttgactaagggtctgcgaactcgtgagcaggaagatggagtttcgagtcaatacttaatcaaggcaattgcgaatgctagcaaggttccaggaacttttgttccagacttgactgaatcagaagttccagatgaatatgaaaagaattttgatgaagaggaagagctaaagcaacttctcagtgggattatatgcttcaaagtgtatcctttctcaagtgactcgtctaatgtagagaggaaaataatcctgtctggttcctttaatccattgcatgatggtcaccttaagctcgtggaaattgcgaccagtatatgcggtggtggatatccatgttttgagttgtcagctgtcaatgcagacaaacctccattggaaatacctcaaatcaatgatcgtgttaaacaatttgaaaaagttggaaagacggtcatagtatctaaccagccatatttttacaagaaagcagaactttttcctggaagtgcttttgtcattggtgcagacacagttgcaagacttgtgcatcccaagtactatggtaatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="21167" stop="29345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21378" g_stop="21386" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21387" i_stop="21469" i_length="83">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21470" g_stop="21568" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="108" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21569" i_stop="21659" i_length="91">
            <donor d_prob="0.036" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21660" g_stop="21744" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="193" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21745" i_stop="22684" i_length="940">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22685" g_stop="22754" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="263" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22755" i_stop="23599" i_length="845">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.030" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23600" g_stop="23660" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="324" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23661" i_stop="23772" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23773" g_stop="23826" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="378" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23827" i_stop="24654" i_length="828">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24655" g_stop="24811" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="535" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24812" i_stop="24888" i_length="77">
            <donor d_prob="0.207" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24889" g_stop="24979" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="626" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24980" i_stop="25109" i_length="130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="25110" g_stop="25219" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="736" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="25220" i_stop="28504" i_length="3285">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="28505" g_stop="28611" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="843" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="28612" i_stop="29023" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="29024" g_stop="29045" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="844" r_stop="865" r_length="22" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E727043" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21378" e_stop="21386"/>
          <exon e_start="21470" e_stop="21568"/>
          <exon e_start="21660" e_stop="21744"/>
          <exon e_start="22685" e_stop="22754"/>
          <exon e_start="23600" e_stop="23660"/>
          <exon e_start="23773" e_stop="23826"/>
          <exon e_start="24655" e_stop="24811"/>
          <exon e_start="24889" e_stop="24979"/>
          <exon e_start="25110" e_stop="25219"/>
          <exon e_start="28505" e_stop="28611"/>
          <exon e_start="29024" e_stop="29045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTCAGGTCTCTAGATTTTTTTTTGATAAGTTTGTTGTTTTAGCTGAATCTAACTGTTAACATCACTTTATGTTATGAAATTAGTACAGGCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAGGTAGTTTGATTTTCAAGTGTAATCTTTGATTTTGCAATTACAGCGATTTCACTGCTAAGAAATTGTGTTTCTCGTTTTTTTCCTGGAACAGGTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAGGTAGTAATTTTGAATTTATTGGAATTTTGTGTTTGATTGTGGATTTTATGGTGTTATCTTGTACTTTATCTCTTAGCTAAATGAATTTGGCCATACATTTCTAGAAATTTTCTAGTTCAGTTGAGAGATTTGAGAAAACTGTGTCTGTGTGAGCTCAAAGAATAATCAGTTCCAAGAAAAAAGGAGGTAGGTAAATAGTTTAAATATGCTAGGGATGTGATCATACTAATAATAAGACAAAAGATCTCATCAGAACTAGGAAGTTAAGCATGCATAGGCGAGTGTAATACTAAGGTGAAACATCAGGGGAAGTCCTCATGTGCATCTTTTTCTGAACCTTACTAGTTTAGGGCCTATTTTACTTGATTGATAGTTAATCATGTAGAGAACGATTAGAAAGAAAAAACTTTCGTGTAAAATTGATGTGGTTGGAAGACAATGAGCAGACGGTTCATATCCTAGATGACTGCTTGATTAATCAGGAGTGATTTATTTGATATATGTGTATGTAATAATTTGTATGCCATGCATAAATCATGAAGGTTTTCGGTTTCCTATTATGACAAGCTGTAATGACATTCTAGTGTGTGAAATTTGTGCTTGTTAATGAAGATGTATAAAGGCAATAGGTACAACCGAGAAGCCAAGCCATCCTTTCAGTAACTAGGTGTATCAGCATAAGTTTATTATTAGTCAAATCTAATAAATATTCTCTCTCACAAAATGGAGGCACCCTAATTTTATTCTTCCTCATTTTCATATTGGATTATGTGCATGGTCGTAAAACAGTGAGGTCACTTTGATTCAAAGTCATCTGGCTATTTTACACCTAGATGTGTATTACAAAGTTTCACCATTTATTATTTAGTAGTAACATTTTGTTCCTGGATATGTGTTGTTTTATTTAAATGACATGATTTCATTTTGTTTGATTGTACAGGTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAGGTATTCTTGTAGCATCAGTCAGTCTTTACCGATATATCTTTTCAGATTCTTATTCCCTTAGGAGCAACTTGCATTCAGGAATCATCAGTTTTGTTTCCTAGATTCACTAGGAGTATAAACTGGTTTTCTTTTAATGATTCACGTGAGGTTTCTATTTGATAAGAAGAGGTGACCATCCTGATTACCATTTGCCTTTACGATAACATGAAATGGATCAGATGAAGGCAAACCATAATAAATGCTAAGATGTATTTGTTTATTCCTCTTTGAAAAATGGAGCTGGTTGACTAAAGGGTAGTCATCCAAGCACAAGTTAATATTAATGATGGCGGTTTCCTGCTTGATCTTGATGTCTAGAATGTCGTAAAAATAACTAATTTTCTCGGTTGTTGAAGACATGCCAAAAGATTCTGCAGTCAGGAATAGTATATGTGTCCGTGTTGACGAAACTTATGCTAATATTTTATGTACATCCTACGTTTTAAGTTGGTATCAACAAAGCACAAATTTTGTTGACATCTTATATGTATGGACATTAAGAACAAGGATTCTTCTTTCTGAAAATGTGGTTGAGTTGTGTTCATATTAGAATCATTTCATCTATCTGTTGTATCCCCTAAAGGGAAGAATAAAAGCACCGAACTTTGCCTTTTTAATTAAGTTTGAAAGATCTGTATCCCTTCAAAGACACATGTGGACCATGTTTGGATCGCTACAAAGATGCCTTTTGCCCCAATTAATTGGTATTCCAAGCATTGGTATTTCCATTTGAGAACTTATTCCTCATTGAGTTGTACTTCAAAATTTGGATCTCTTTCTGAGCATGAGTAGTGCTTTATGAGTAGGTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAGGTATCATTCATGCATGTTTCTCTTTTAGTCATCTTTATCTTCTTTAAATTAGTATCTTCGGATTTCAATGACCGAAGTTCTGCTTTTGCTTAAACTGAATGGATGGATACAGGGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAGGTGTGTATAAAATTTTGATAGAATTTCTAAAAGAGGAAATAGAACATTTCATACACCCTTTTGGGTAATGAAACAAGTTCAACATACAACTGCACTGGTTAAATCAATTAAATATACATAACCTGAACGAAATGTATAGTGCATGGCCAATTTGGAAATTCACAGGTTCCAATTCTTTTTAGGTATTTATCTATTTTCATAGCCAATGCTAGATGCTACTTATTATAGTGTTCTGATGGGATTTGGTGCGTTATGCTGCTTATTATAGTGTTAGATGAATGTGTATATTGTATAACTGTGCTCCTTAACGTAAATAATCAAAACTTAAACATTTCCAGTTTTTCAGTCCAAGTTTTTAATTCTGCCTTTTAGGTATTTCCCCAATAGAATTCGCTAGTAGAAGCCAGACTTTATTGCATTATCTTGATATTAGGAGGGTTAAAGTTAAATGTGTTATGGAAGGTTACATTGAATGGGCTTGTTTCCTCTATCATTTATCCATGCTTGTTTGTCCGCTGAGATTATAATATTTTCTCTTGGTTTTGCAGCTATATATTTGTGTATTCTACAACTGAACAAGTCTATTAAGTGGATACACTTTTTGCTTGTTTGAGCACCATCGGGACTTTAAGACAATCACCGATAACCAGTAGAGTTTTAGTTCGAAGTGTGGGTTTGTAGATACCTAAAATGTAGCTGTCTGCAGTTGAAATTTTCTGTAGATCCTCTTTAACTCATTATTGAGTAGTACTTGCTAATCCATCTATGCTGGAACTTCCATCAAATCCACCCCGTAGATTCTTATATTAGCTCTGTCTTCTGTTTCAGGCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTGGTATGTGTTAATGCAATCAACATAGTCACATTCAGAGCCAACAATCCACTGCAGATGTTGATACAGGAATTTTGCAGACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGATGGTCACCTTAAGCTCGTGGAAATTGCGACCAGGTACACCTCTCTAACATCAAACATGGTTTTCTACTATTGAAAAGATTGATTTTTTCTAAGCATCACGAAAGATCTGTTTATCCCTAAATGAATTACATCTTATAGCAGAATGCCAAATTTTTTCGTGCAGTATATGCGGTGGTGGATATCCATGTTTTGAGTTGTCAGCTGTCAATGCAGACAAACCTCCATTGGAAATACCTCAAATCAATGATCGTGTTAAACAATTTGAAAAAGTTGGTAAGATTCTAAAATATGATATTTTACACACACAGATACAGATAGTAAGAGTTGAAAAATGGCTACATGACCTGTTTTTTTTATTTCTTTTGTCAAGCTTCTCAAAGGCTTAGAATGCAAAACTGTACTTTGAGGTTGTTTCCTTCCAGAAACTATTCTAAAAATCGTCACTCAGTCTTTGATGCAAAACAAATAGGAAAACAAGAAAAGGAAGAGAAGTATATATATTCACTACCGTTTATCCATAGTGGTTTCATATCTAAGTATTATTACTAATAGAATAGGAATAGGTATACACAATCCTACTTAGAATAAGAATAGGAATGTAAATAGTATATAGTATCTAACTTGGAAAAGGATTATAATGTTGTGTCCTAGTAGGAAAAGGAGTCTAATTTAATGTCTATAAATAGGGTTTTAATGTAATAATACTCCTCTTATATATTTCTCAGAGCTTGTTCAGTTAAGTATAAACATATTGTGAGTTTTGACATATTGCGGATTATCACATATCTGCTGCAGATCCCAATATGGATCTCTTACAATCCTACCCCGACGATGAAATCACTGAATGGCTGCCACTAAACCTTAATTCTCAATTTTCTGACCAAAATCCTTCACCTGATTCTTCCCCAATTAGAATGCTCTCCTTCTAAATCCGCTGCCTCTAAAGTTGACGACACCATGCTAACCCTACAAGTCACTGGCAAAGCTGCCAGAGCTCAATCCAAACCCCATGACCCGACCCAACACCTCGTTGGATTCAACTCGATGTATGAACAACTATGGGCACCAATTTACGGCCCAGCTCACCCGTACGCGAAGGACGGGTTAGCTCAAGGAATCAGAAATCACAAGCTAGGGTTCGTTGAGGTCGCGTCCATTGAATCCTTAGTATTTGACGAGCAGAATAATACTTTTCAGAAGTATGGGTATGCTGTTGAACCCTCCCAAAATAGCTACAGTGGTGATTTGGAAAAAATGAAGGGATGTGATGCTATTTCTCTGTACATAACCACAGCATGAACAGAAGAAGAGGAAGTTAGAGAAAAAGAAGGAGAAAATGGAGGAGGGTGTTGAGCAGGACGTGGATATGACGGAAGTTGAAAATCCGTCCACAGACATGTGGCAGGAAGAGTCCATGGGCTGGAAAGAAAGAAGGGTTGCAAGTTGAATTATCTGGGGAGCAGAAAAAGTATGCTAAGAAGAAGGTTGAAGAAAGAGGTGGTGATGAAAATAAGGTGGAGCCTATGGTTGAAAAGAGCACATTTCATGGTAAAGAGAAAAGGATTATCAGGGTAGGTCTTGGATCGCTCCACCAAAGGATGGAAAGGCTGCTAATGATCATTGTTATATACCAAAGAGATTAGTTCATAATTGGAGTGGACACACGAAAGGGGTTTCAGCTATTAGGTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAGATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAAGGATATTTGGTTTAGCAATGACGGGTCGAAGTTTTTGGCAGCTGGCTATGATAAGCACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACATTCTCGACAAGTAATATACCCTATGTAGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGAACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGATTGTGACTTATAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCTGGTTGTTATTAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTTGCCCCATCCAAATGGAAATTGGATTGCAGCACGAAGTCTGGATAACCAGATTCTTATTTGTAGTACGCGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTTGCTGGTTATGCCTGCCAGTTCAATTTCTCACCAGATGGATGGTTTGTCTTGTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAGGGTCTTCAGAACTCCCAAGTGTCATGAAGGGGTCTGTATTGGTGCAGAGTGGCATCCTCCGGAACAAAGTAAAGTTGCTACATGTGGTTGGGATGGTTTTATCAAGTAGTGGGACTAGTTTTGGGCAGCCATTTCTGTCTCTGCATTTATTGCGATGGCAACTTGTTCAATATCAGTTGGTTAGCAAGACTGTTCTATGCAATGGTTGGTCAACTCGTCTGGGACTGACAGTGGCGGAGCCAGAAATTTTATGAAGAGGGTCCAAAAATTAAACAACAAAAGCTCTTTTTAAAAAGGGGAAAAATTGTTGCAAGTGAGATCTGAATACATGAGCACTGACTCATTAAAGATGTTTAAACCCACGTTCAAGACGTCTTAACCCACTAGGCTATAACAACCTATTAAGTCAAGGGTATCCAAAATATGTTATTTAATCACTTCGTCTATCATTTTACTTGTATATGCTGTATTTTTTTCGGACGAAGGGTGTCCAGTTGGACACCCTGGCATACATTTGCCTACGCCACTTCTGGGACACGTCTAGCGGGACCAAGCTATGAATGAATTTGTTGGTCAATACTAGTCTTTACCTCTGTAAAACAGGTTTTCTTCTCAGATGCTTTTCTTTGTTGAGGTTGTACCAGTAGTTAATAACAGAGGACACACGCAACTTTCAGTCAAATTATGATATTCCATAAGACAAGTTAGTTGGAAAATCAGTTCCATTTTCCTCTGTCAATGTCATGCACGAATGAAGTTTATGTTGTATATTGTTTTTGTTATTTTCAATTTTCTTTTTTCGGCCTTCCAACATAGGATTGTGTATACCTATTCCTATTCTAATAATTACATTCTTACCCTGTTTTCATATTCAAAAATATGCTGATGTTTGAATGGTTTCTGTTGGTGATTTTATGAATGGGACAGCAAATAGAATTGAATGGATTGAAATGGCTTGCAATAATTTTACTGAGCATTGAGGACTTTAAATAGTCAACATAAAATACATAATCTGCATAGTTTGAAATTTAAAACAACCTAAAATATCTCAACAACTTAACTAAAATTCGAAATTCAACTTAACTACTGCAGTGACTTAAAGCATATTTCAACAGTTTCGGCCTTTGAAAATGCAGGAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCATGTAAGGTTCTTTCACTTGCTTCTACAAAATTGAGATTACATGAGATCAAGAATTTAGTAAATTCAATAAGAAGTTTGGGAATACAATTATTGGGAGGAAGAGATTTTTTGTCAAATTTTGTGATAGAACATCCAGCTATACCGCTGGTTTCTAAGAGTATCTCGTAACTAGCACCTGATGCAAGTTATGTTCATGTATAGAAACACTAGCGCTTAAATACAAGATTATGAATATACGAAGGATATGAAACAAAAGTATGTACTCGGAAATACCAAAAGTGTTCCTTATTTGTGATTCAAGTTCTCAATTTTGCATAATCAATTTTGCTGATAAATGGGGTGATAACCCGCTATATAAATAGGAAGGTTCCCAAAAAGTGTATGTACTGATCTTTGCAATTTGCTCTTTCCAGCCAAAGTACTATGGTAATGACT</genome_strand>
        <mrna_strand>GCCTCTCAG...................................................................................GCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAG...........................................................................................GTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAG................................................................................................................GGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTG.............................................................................ACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGATGGTCACCTTAAGCTCGTGGAAATTGCGACCAG..................................................................................................................................TATATGCGGTGGTGGATATCCATGTTTTGAGTTGTCAGCTGTCAATGCAGACAAACCTCCATTGGAAATACCTCAAATCAATGATCGTGTTAAACAATTTGAAAAAGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGTACTATGGTAATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393168" ref_strand="+" ref_description="SGN-E393168 [TUS-38-P1]">
      <seq>ctcaggcgctggggtggttgatgtcagttccgggagcatcgaacactgtgcttgaatctgtagttacatattccagaatgtctatgattcaattacttggcaaggttcctgctcaagctgctagttcgcaaacggcggaggaaatggcattgttggcttacaatagagcattaaagctttctaaaccaggttcaccagttctaggtgtgggttttactggtgccttggctagtgcacaaccaaaacgtggagatcataggtttcacgtgtcaaccagaacatctgaccggttttggacctcgacagttactttgactaagggtctgcgaactcgtgagcaggaagatggagtttcgagtcaatacttaatcaaggcaattgcgaatgctagcaaggttccaggaacttttgttccagacttgactgaatcagaagttccagatgaatatgaaaagaattttgatgaagaggaagagctaaagcaacttctcagtgggattatatgcttcaaagtgtatcctttctcaagtgactcgtctaatgtagagaggaaaataatcctgtctggttcctttaatccattgcatgatggtcaccttaagctcgtggaaattgcgaccagtatatgcggtggtggatatccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="21167" stop="25434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21382" g_stop="21386" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21387" i_stop="21469" i_length="83">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21470" g_stop="21568" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="104" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21569" i_stop="21659" i_length="91">
            <donor d_prob="0.036" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21660" g_stop="21744" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="189" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21745" i_stop="22684" i_length="940">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22685" g_stop="22754" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="259" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22755" i_stop="23599" i_length="845">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.030" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23600" g_stop="23660" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="320" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23661" i_stop="23772" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23773" g_stop="23826" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="374" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23827" i_stop="24654" i_length="828">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24655" g_stop="24811" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="531" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24812" i_stop="24888" i_length="77">
            <donor d_prob="0.207" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24889" g_stop="24979" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="622" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24980" i_stop="25109" i_length="130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="25110" g_stop="25134" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="647" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E393168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21382" e_stop="21386"/>
          <exon e_start="21470" e_stop="21568"/>
          <exon e_start="21660" e_stop="21744"/>
          <exon e_start="22685" e_stop="22754"/>
          <exon e_start="23600" e_stop="23660"/>
          <exon e_start="23773" e_stop="23826"/>
          <exon e_start="24655" e_stop="24811"/>
          <exon e_start="24889" e_stop="24979"/>
          <exon e_start="25110" e_stop="25134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGTCTCTAGATTTTTTTTTGATAAGTTTGTTGTTTTAGCTGAATCTAACTGTTAACATCACTTTATGTTATGAAATTAGTACAGGCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAGGTAGTTTGATTTTCAAGTGTAATCTTTGATTTTGCAATTACAGCGATTTCACTGCTAAGAAATTGTGTTTCTCGTTTTTTTCCTGGAACAGGTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAGGTAGTAATTTTGAATTTATTGGAATTTTGTGTTTGATTGTGGATTTTATGGTGTTATCTTGTACTTTATCTCTTAGCTAAATGAATTTGGCCATACATTTCTAGAAATTTTCTAGTTCAGTTGAGAGATTTGAGAAAACTGTGTCTGTGTGAGCTCAAAGAATAATCAGTTCCAAGAAAAAAGGAGGTAGGTAAATAGTTTAAATATGCTAGGGATGTGATCATACTAATAATAAGACAAAAGATCTCATCAGAACTAGGAAGTTAAGCATGCATAGGCGAGTGTAATACTAAGGTGAAACATCAGGGGAAGTCCTCATGTGCATCTTTTTCTGAACCTTACTAGTTTAGGGCCTATTTTACTTGATTGATAGTTAATCATGTAGAGAACGATTAGAAAGAAAAAACTTTCGTGTAAAATTGATGTGGTTGGAAGACAATGAGCAGACGGTTCATATCCTAGATGACTGCTTGATTAATCAGGAGTGATTTATTTGATATATGTGTATGTAATAATTTGTATGCCATGCATAAATCATGAAGGTTTTCGGTTTCCTATTATGACAAGCTGTAATGACATTCTAGTGTGTGAAATTTGTGCTTGTTAATGAAGATGTATAAAGGCAATAGGTACAACCGAGAAGCCAAGCCATCCTTTCAGTAACTAGGTGTATCAGCATAAGTTTATTATTAGTCAAATCTAATAAATATTCTCTCTCACAAAATGGAGGCACCCTAATTTTATTCTTCCTCATTTTCATATTGGATTATGTGCATGGTCGTAAAACAGTGAGGTCACTTTGATTCAAAGTCATCTGGCTATTTTACACCTAGATGTGTATTACAAAGTTTCACCATTTATTATTTAGTAGTAACATTTTGTTCCTGGATATGTGTTGTTTTATTTAAATGACATGATTTCATTTTGTTTGATTGTACAGGTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAGGTATTCTTGTAGCATCAGTCAGTCTTTACCGATATATCTTTTCAGATTCTTATTCCCTTAGGAGCAACTTGCATTCAGGAATCATCAGTTTTGTTTCCTAGATTCACTAGGAGTATAAACTGGTTTTCTTTTAATGATTCACGTGAGGTTTCTATTTGATAAGAAGAGGTGACCATCCTGATTACCATTTGCCTTTACGATAACATGAAATGGATCAGATGAAGGCAAACCATAATAAATGCTAAGATGTATTTGTTTATTCCTCTTTGAAAAATGGAGCTGGTTGACTAAAGGGTAGTCATCCAAGCACAAGTTAATATTAATGATGGCGGTTTCCTGCTTGATCTTGATGTCTAGAATGTCGTAAAAATAACTAATTTTCTCGGTTGTTGAAGACATGCCAAAAGATTCTGCAGTCAGGAATAGTATATGTGTCCGTGTTGACGAAACTTATGCTAATATTTTATGTACATCCTACGTTTTAAGTTGGTATCAACAAAGCACAAATTTTGTTGACATCTTATATGTATGGACATTAAGAACAAGGATTCTTCTTTCTGAAAATGTGGTTGAGTTGTGTTCATATTAGAATCATTTCATCTATCTGTTGTATCCCCTAAAGGGAAGAATAAAAGCACCGAACTTTGCCTTTTTAATTAAGTTTGAAAGATCTGTATCCCTTCAAAGACACATGTGGACCATGTTTGGATCGCTACAAAGATGCCTTTTGCCCCAATTAATTGGTATTCCAAGCATTGGTATTTCCATTTGAGAACTTATTCCTCATTGAGTTGTACTTCAAAATTTGGATCTCTTTCTGAGCATGAGTAGTGCTTTATGAGTAGGTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAGGTATCATTCATGCATGTTTCTCTTTTAGTCATCTTTATCTTCTTTAAATTAGTATCTTCGGATTTCAATGACCGAAGTTCTGCTTTTGCTTAAACTGAATGGATGGATACAGGGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAGGTGTGTATAAAATTTTGATAGAATTTCTAAAAGAGGAAATAGAACATTTCATACACCCTTTTGGGTAATGAAACAAGTTCAACATACAACTGCACTGGTTAAATCAATTAAATATACATAACCTGAACGAAATGTATAGTGCATGGCCAATTTGGAAATTCACAGGTTCCAATTCTTTTTAGGTATTTATCTATTTTCATAGCCAATGCTAGATGCTACTTATTATAGTGTTCTGATGGGATTTGGTGCGTTATGCTGCTTATTATAGTGTTAGATGAATGTGTATATTGTATAACTGTGCTCCTTAACGTAAATAATCAAAACTTAAACATTTCCAGTTTTTCAGTCCAAGTTTTTAATTCTGCCTTTTAGGTATTTCCCCAATAGAATTCGCTAGTAGAAGCCAGACTTTATTGCATTATCTTGATATTAGGAGGGTTAAAGTTAAATGTGTTATGGAAGGTTACATTGAATGGGCTTGTTTCCTCTATCATTTATCCATGCTTGTTTGTCCGCTGAGATTATAATATTTTCTCTTGGTTTTGCAGCTATATATTTGTGTATTCTACAACTGAACAAGTCTATTAAGTGGATACACTTTTTGCTTGTTTGAGCACCATCGGGACTTTAAGACAATCACCGATAACCAGTAGAGTTTTAGTTCGAAGTGTGGGTTTGTAGATACCTAAAATGTAGCTGTCTGCAGTTGAAATTTTCTGTAGATCCTCTTTAACTCATTATTGAGTAGTACTTGCTAATCCATCTATGCTGGAACTTCCATCAAATCCACCCCGTAGATTCTTATATTAGCTCTGTCTTCTGTTTCAGGCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTGGTATGTGTTAATGCAATCAACATAGTCACATTCAGAGCCAACAATCCACTGCAGATGTTGATACAGGAATTTTGCAGACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGATGGTCACCTTAAGCTCGTGGAAATTGCGACCAGGTACACCTCTCTAACATCAAACATGGTTTTCTACTATTGAAAAGATTGATTTTTTCTAAGCATCACGAAAGATCTGTTTATCCCTAAATGAATTACATCTTATAGCAGAATGCCAAATTTTTTCGTGCAGTATATGCGGTGGTGGATATCCATGT</genome_strand>
        <mrna_strand>CTCAG...................................................................................GCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAG...........................................................................................GTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAG................................................................................................................GGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTG.............................................................................ACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGATGGTCACCTTAAGCTCGTGGAAATTGCGACCAG..................................................................................................................................TATATGCGGTGGTGGATATCCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293572" ref_strand="-" ref_description="SGN-E293572 [cLET-15-J19](-)">
      <seq>tcaggcgctggggtggttgatgtcagttccgggagcatcgaacactgtgcttgaatctgtagttacatattccagaatgtctatgattcaattacttggcaaggttcctgctcaagctgctagttcgcaaacggcggaggaaatggcattgttggcttacaatagagcattaaagctttctaaaccaggttcaccagttctaggtgtgggttttactggtgccttggctagtgcacaaccaaaacgtggagatcataggtttcacgtgtcaaccagaacatctgaccggttttggacctcgacagttactttgactaagggtctgcgaactcgtgagcaggaagatggagtttcgagtcaatacttaatcaaggcaattgcgaatgctagcaaggttccaggaacttttgttccagacttgactgaatcagaagttccagatgaatatgaaaagaattttgatgaagaggaagagctaaagcaacttctcagtgggattatatgcttcaaagtgtatcctttctcaagtgactcgtctaatgtagagaggaaaataatcctgtctggttcctttaatccattgcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="21167" stop="25247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21466" g_stop="21568" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21569" i_stop="21659" i_length="91">
            <donor d_prob="0.036" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21660" g_stop="21744" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="188" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21745" i_stop="22684" i_length="940">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22685" g_stop="22754" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="258" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22755" i_stop="23599" i_length="845">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.030" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23600" g_stop="23660" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="319" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23661" i_stop="23772" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23773" g_stop="23826" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="373" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23827" i_stop="24654" i_length="828">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24655" g_stop="24811" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="530" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24812" i_stop="24888" i_length="77">
            <donor d_prob="0.207" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24889" g_stop="24947" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="589" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E293572" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293572" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21466" e_stop="21568"/>
          <exon e_start="21660" e_stop="21744"/>
          <exon e_start="22685" e_stop="22754"/>
          <exon e_start="23600" e_stop="23660"/>
          <exon e_start="23773" e_stop="23826"/>
          <exon e_start="24655" e_stop="24811"/>
          <exon e_start="24889" e_stop="24947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAGGTAGTTTGATTTTCAAGTGTAATCTTTGATTTTGCAATTACAGCGATTTCACTGCTAAGAAATTGTGTTTCTCGTTTTTTTCCTGGAACAGGTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAGGTAGTAATTTTGAATTTATTGGAATTTTGTGTTTGATTGTGGATTTTATGGTGTTATCTTGTACTTTATCTCTTAGCTAAATGAATTTGGCCATACATTTCTAGAAATTTTCTAGTTCAGTTGAGAGATTTGAGAAAACTGTGTCTGTGTGAGCTCAAAGAATAATCAGTTCCAAGAAAAAAGGAGGTAGGTAAATAGTTTAAATATGCTAGGGATGTGATCATACTAATAATAAGACAAAAGATCTCATCAGAACTAGGAAGTTAAGCATGCATAGGCGAGTGTAATACTAAGGTGAAACATCAGGGGAAGTCCTCATGTGCATCTTTTTCTGAACCTTACTAGTTTAGGGCCTATTTTACTTGATTGATAGTTAATCATGTAGAGAACGATTAGAAAGAAAAAACTTTCGTGTAAAATTGATGTGGTTGGAAGACAATGAGCAGACGGTTCATATCCTAGATGACTGCTTGATTAATCAGGAGTGATTTATTTGATATATGTGTATGTAATAATTTGTATGCCATGCATAAATCATGAAGGTTTTCGGTTTCCTATTATGACAAGCTGTAATGACATTCTAGTGTGTGAAATTTGTGCTTGTTAATGAAGATGTATAAAGGCAATAGGTACAACCGAGAAGCCAAGCCATCCTTTCAGTAACTAGGTGTATCAGCATAAGTTTATTATTAGTCAAATCTAATAAATATTCTCTCTCACAAAATGGAGGCACCCTAATTTTATTCTTCCTCATTTTCATATTGGATTATGTGCATGGTCGTAAAACAGTGAGGTCACTTTGATTCAAAGTCATCTGGCTATTTTACACCTAGATGTGTATTACAAAGTTTCACCATTTATTATTTAGTAGTAACATTTTGTTCCTGGATATGTGTTGTTTTATTTAAATGACATGATTTCATTTTGTTTGATTGTACAGGTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAGGTATTCTTGTAGCATCAGTCAGTCTTTACCGATATATCTTTTCAGATTCTTATTCCCTTAGGAGCAACTTGCATTCAGGAATCATCAGTTTTGTTTCCTAGATTCACTAGGAGTATAAACTGGTTTTCTTTTAATGATTCACGTGAGGTTTCTATTTGATAAGAAGAGGTGACCATCCTGATTACCATTTGCCTTTACGATAACATGAAATGGATCAGATGAAGGCAAACCATAATAAATGCTAAGATGTATTTGTTTATTCCTCTTTGAAAAATGGAGCTGGTTGACTAAAGGGTAGTCATCCAAGCACAAGTTAATATTAATGATGGCGGTTTCCTGCTTGATCTTGATGTCTAGAATGTCGTAAAAATAACTAATTTTCTCGGTTGTTGAAGACATGCCAAAAGATTCTGCAGTCAGGAATAGTATATGTGTCCGTGTTGACGAAACTTATGCTAATATTTTATGTACATCCTACGTTTTAAGTTGGTATCAACAAAGCACAAATTTTGTTGACATCTTATATGTATGGACATTAAGAACAAGGATTCTTCTTTCTGAAAATGTGGTTGAGTTGTGTTCATATTAGAATCATTTCATCTATCTGTTGTATCCCCTAAAGGGAAGAATAAAAGCACCGAACTTTGCCTTTTTAATTAAGTTTGAAAGATCTGTATCCCTTCAAAGACACATGTGGACCATGTTTGGATCGCTACAAAGATGCCTTTTGCCCCAATTAATTGGTATTCCAAGCATTGGTATTTCCATTTGAGAACTTATTCCTCATTGAGTTGTACTTCAAAATTTGGATCTCTTTCTGAGCATGAGTAGTGCTTTATGAGTAGGTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAGGTATCATTCATGCATGTTTCTCTTTTAGTCATCTTTATCTTCTTTAAATTAGTATCTTCGGATTTCAATGACCGAAGTTCTGCTTTTGCTTAAACTGAATGGATGGATACAGGGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAGGTGTGTATAAAATTTTGATAGAATTTCTAAAAGAGGAAATAGAACATTTCATACACCCTTTTGGGTAATGAAACAAGTTCAACATACAACTGCACTGGTTAAATCAATTAAATATACATAACCTGAACGAAATGTATAGTGCATGGCCAATTTGGAAATTCACAGGTTCCAATTCTTTTTAGGTATTTATCTATTTTCATAGCCAATGCTAGATGCTACTTATTATAGTGTTCTGATGGGATTTGGTGCGTTATGCTGCTTATTATAGTGTTAGATGAATGTGTATATTGTATAACTGTGCTCCTTAACGTAAATAATCAAAACTTAAACATTTCCAGTTTTTCAGTCCAAGTTTTTAATTCTGCCTTTTAGGTATTTCCCCAATAGAATTCGCTAGTAGAAGCCAGACTTTATTGCATTATCTTGATATTAGGAGGGTTAAAGTTAAATGTGTTATGGAAGGTTACATTGAATGGGCTTGTTTCCTCTATCATTTATCCATGCTTGTTTGTCCGCTGAGATTATAATATTTTCTCTTGGTTTTGCAGCTATATATTTGTGTATTCTACAACTGAACAAGTCTATTAAGTGGATACACTTTTTGCTTGTTTGAGCACCATCGGGACTTTAAGACAATCACCGATAACCAGTAGAGTTTTAGTTCGAAGTGTGGGTTTGTAGATACCTAAAATGTAGCTGTCTGCAGTTGAAATTTTCTGTAGATCCTCTTTAACTCATTATTGAGTAGTACTTGCTAATCCATCTATGCTGGAACTTCCATCAAATCCACCCCGTAGATTCTTATATTAGCTCTGTCTTCTGTTTCAGGCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTGGTATGTGTTAATGCAATCAACATAGTCACATTCAGAGCCAACAATCCACTGCAGATGTTGATACAGGAATTTTGCAGACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGAT</genome_strand>
        <mrna_strand>TCAGGCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAG...........................................................................................GTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAG................................................................................................................GGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTG.............................................................................ACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293571" ref_strand="+" ref_description="SGN-E293571 [cLET-15-J19]">
      <seq>tcaggcgctggggtggttgatgtcagttccgggagcatcgaacactgtgcttgaatctgtagttacatattccagaatgtctatgattcaattacttggcaaggttcctgctcaagctgctagttcgcaaacggcggaggaaatggcattgttggcttacaatagagcattaaagctttctaaaccaggttcaccagttctaggtgtgggttttactggtgccttggctagtgcacaaccaaaacgtggagatcataggtttcacgtgtcaaccagaacatctgaccggttttggacctcgacagttactttgactaagggtctgcgaactcgtgagcaggaagatggagtttcgagtcaatacttaatcaaggcaattgcgaatgctagcaaggttccaggaacttttgttccagacttgactgaatcagaagttccagatgaatatgaaaagaattttgatgaagaggaagagctaaagcaacttctcagtgggattatatgcttcaaagtgtatcctttctcaagtgactcgtctaatgtagagaggaaaataatcctgtctggttcctttaatccattgcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="21167" stop="25247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21466" g_stop="21568" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21569" i_stop="21659" i_length="91">
            <donor d_prob="0.036" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21660" g_stop="21744" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="188" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21745" i_stop="22684" i_length="940">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22685" g_stop="22754" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="258" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22755" i_stop="23599" i_length="845">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.030" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23600" g_stop="23660" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="319" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23661" i_stop="23772" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23773" g_stop="23826" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="373" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23827" i_stop="24654" i_length="828">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24655" g_stop="24811" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="530" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24812" i_stop="24888" i_length="77">
            <donor d_prob="0.207" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24889" g_stop="24947" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="589" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E293571" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21466" e_stop="21568"/>
          <exon e_start="21660" e_stop="21744"/>
          <exon e_start="22685" e_stop="22754"/>
          <exon e_start="23600" e_stop="23660"/>
          <exon e_start="23773" e_stop="23826"/>
          <exon e_start="24655" e_stop="24811"/>
          <exon e_start="24889" e_stop="24947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAGGTAGTTTGATTTTCAAGTGTAATCTTTGATTTTGCAATTACAGCGATTTCACTGCTAAGAAATTGTGTTTCTCGTTTTTTTCCTGGAACAGGTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAGGTAGTAATTTTGAATTTATTGGAATTTTGTGTTTGATTGTGGATTTTATGGTGTTATCTTGTACTTTATCTCTTAGCTAAATGAATTTGGCCATACATTTCTAGAAATTTTCTAGTTCAGTTGAGAGATTTGAGAAAACTGTGTCTGTGTGAGCTCAAAGAATAATCAGTTCCAAGAAAAAAGGAGGTAGGTAAATAGTTTAAATATGCTAGGGATGTGATCATACTAATAATAAGACAAAAGATCTCATCAGAACTAGGAAGTTAAGCATGCATAGGCGAGTGTAATACTAAGGTGAAACATCAGGGGAAGTCCTCATGTGCATCTTTTTCTGAACCTTACTAGTTTAGGGCCTATTTTACTTGATTGATAGTTAATCATGTAGAGAACGATTAGAAAGAAAAAACTTTCGTGTAAAATTGATGTGGTTGGAAGACAATGAGCAGACGGTTCATATCCTAGATGACTGCTTGATTAATCAGGAGTGATTTATTTGATATATGTGTATGTAATAATTTGTATGCCATGCATAAATCATGAAGGTTTTCGGTTTCCTATTATGACAAGCTGTAATGACATTCTAGTGTGTGAAATTTGTGCTTGTTAATGAAGATGTATAAAGGCAATAGGTACAACCGAGAAGCCAAGCCATCCTTTCAGTAACTAGGTGTATCAGCATAAGTTTATTATTAGTCAAATCTAATAAATATTCTCTCTCACAAAATGGAGGCACCCTAATTTTATTCTTCCTCATTTTCATATTGGATTATGTGCATGGTCGTAAAACAGTGAGGTCACTTTGATTCAAAGTCATCTGGCTATTTTACACCTAGATGTGTATTACAAAGTTTCACCATTTATTATTTAGTAGTAACATTTTGTTCCTGGATATGTGTTGTTTTATTTAAATGACATGATTTCATTTTGTTTGATTGTACAGGTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAGGTATTCTTGTAGCATCAGTCAGTCTTTACCGATATATCTTTTCAGATTCTTATTCCCTTAGGAGCAACTTGCATTCAGGAATCATCAGTTTTGTTTCCTAGATTCACTAGGAGTATAAACTGGTTTTCTTTTAATGATTCACGTGAGGTTTCTATTTGATAAGAAGAGGTGACCATCCTGATTACCATTTGCCTTTACGATAACATGAAATGGATCAGATGAAGGCAAACCATAATAAATGCTAAGATGTATTTGTTTATTCCTCTTTGAAAAATGGAGCTGGTTGACTAAAGGGTAGTCATCCAAGCACAAGTTAATATTAATGATGGCGGTTTCCTGCTTGATCTTGATGTCTAGAATGTCGTAAAAATAACTAATTTTCTCGGTTGTTGAAGACATGCCAAAAGATTCTGCAGTCAGGAATAGTATATGTGTCCGTGTTGACGAAACTTATGCTAATATTTTATGTACATCCTACGTTTTAAGTTGGTATCAACAAAGCACAAATTTTGTTGACATCTTATATGTATGGACATTAAGAACAAGGATTCTTCTTTCTGAAAATGTGGTTGAGTTGTGTTCATATTAGAATCATTTCATCTATCTGTTGTATCCCCTAAAGGGAAGAATAAAAGCACCGAACTTTGCCTTTTTAATTAAGTTTGAAAGATCTGTATCCCTTCAAAGACACATGTGGACCATGTTTGGATCGCTACAAAGATGCCTTTTGCCCCAATTAATTGGTATTCCAAGCATTGGTATTTCCATTTGAGAACTTATTCCTCATTGAGTTGTACTTCAAAATTTGGATCTCTTTCTGAGCATGAGTAGTGCTTTATGAGTAGGTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAGGTATCATTCATGCATGTTTCTCTTTTAGTCATCTTTATCTTCTTTAAATTAGTATCTTCGGATTTCAATGACCGAAGTTCTGCTTTTGCTTAAACTGAATGGATGGATACAGGGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAGGTGTGTATAAAATTTTGATAGAATTTCTAAAAGAGGAAATAGAACATTTCATACACCCTTTTGGGTAATGAAACAAGTTCAACATACAACTGCACTGGTTAAATCAATTAAATATACATAACCTGAACGAAATGTATAGTGCATGGCCAATTTGGAAATTCACAGGTTCCAATTCTTTTTAGGTATTTATCTATTTTCATAGCCAATGCTAGATGCTACTTATTATAGTGTTCTGATGGGATTTGGTGCGTTATGCTGCTTATTATAGTGTTAGATGAATGTGTATATTGTATAACTGTGCTCCTTAACGTAAATAATCAAAACTTAAACATTTCCAGTTTTTCAGTCCAAGTTTTTAATTCTGCCTTTTAGGTATTTCCCCAATAGAATTCGCTAGTAGAAGCCAGACTTTATTGCATTATCTTGATATTAGGAGGGTTAAAGTTAAATGTGTTATGGAAGGTTACATTGAATGGGCTTGTTTCCTCTATCATTTATCCATGCTTGTTTGTCCGCTGAGATTATAATATTTTCTCTTGGTTTTGCAGCTATATATTTGTGTATTCTACAACTGAACAAGTCTATTAAGTGGATACACTTTTTGCTTGTTTGAGCACCATCGGGACTTTAAGACAATCACCGATAACCAGTAGAGTTTTAGTTCGAAGTGTGGGTTTGTAGATACCTAAAATGTAGCTGTCTGCAGTTGAAATTTTCTGTAGATCCTCTTTAACTCATTATTGAGTAGTACTTGCTAATCCATCTATGCTGGAACTTCCATCAAATCCACCCCGTAGATTCTTATATTAGCTCTGTCTTCTGTTTCAGGCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTGGTATGTGTTAATGCAATCAACATAGTCACATTCAGAGCCAACAATCCACTGCAGATGTTGATACAGGAATTTTGCAGACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGAT</genome_strand>
        <mrna_strand>TCAGGCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAG...........................................................................................GTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAG................................................................................................................GGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTG.............................................................................ACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423841" ref_strand="-" ref_description="SGN-E423841 [STM-42-L19]">
      <seq>aaattgcaactagtatttgcggtggtggatatccatgttttgagttgtcagctgtcaatgcagacaaacctccattggaaatacctcaaatcaatgatcgtgttaaacaatttgaaaaagttggaaagacggttatagtgtctaaccagccatatttttacaagaaagcagaactttttcctgggagtgcttttgtcattggtgcagacacagttgcaagacttgtacatccaaagtactatggtaatgactatggaaagatgttggagatacttctgggatgtaaaaacacgggatgtactttcctagtgggtggtagaaatgttgatggaactttcaaggactcttgtaaggccgtttgcatcattttcactcaggtatctgcattggtacttcgcttcgtttaaacaattagttctatctatgtaacatgaaaataagcgccaaaaaggaaaaaaacagaaagctttatccattttcatcgttggctctttccagtttcaacagtagtgagaatgtgtggaattgttgttctctgagttgagtttccttactaacacatatgtatattaaacagttcttggttttaaacataataagattctgttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24808" stop="29892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24967" g_stop="24979" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24980" i_stop="25109" i_length="130">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25110" g_stop="25219" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="123" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25220" i_stop="28504" i_length="3285">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28505" g_stop="28611" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="230" r_length="107" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28612" i_stop="29023" i_length="412">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.865" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29024" g_stop="29134" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="341" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29135" i_stop="29336" i_length="202">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29337" g_stop="29597" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="612" r_length="271" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E423841" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423841" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24967" e_stop="24979"/>
          <exon e_start="25110" e_stop="25219"/>
          <exon e_start="28505" e_stop="28611"/>
          <exon e_start="29024" e_stop="29134"/>
          <exon e_start="29337" e_stop="29597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGCGACCAGGTACACCTCTCTAACATCAAACATGGTTTTCTACTATTGAAAAGATTGATTTTTTCTAAGCATCACGAAAGATCTGTTTATCCCTAAATGAATTACATCTTATAGCAGAATGCCAAATTTTTTCGTGCAGTATATGCGGTGGTGGATATCCATGTTTTGAGTTGTCAGCTGTCAATGCAGACAAACCTCCATTGGAAATACCTCAAATCAATGATCGTGTTAAACAATTTGAAAAAGTTGGTAAGATTCTAAAATATGATATTTTACACACACAGATACAGATAGTAAGAGTTGAAAAATGGCTACATGACCTGTTTTTTTTATTTCTTTTGTCAAGCTTCTCAAAGGCTTAGAATGCAAAACTGTACTTTGAGGTTGTTTCCTTCCAGAAACTATTCTAAAAATCGTCACTCAGTCTTTGATGCAAAACAAATAGGAAAACAAGAAAAGGAAGAGAAGTATATATATTCACTACCGTTTATCCATAGTGGTTTCATATCTAAGTATTATTACTAATAGAATAGGAATAGGTATACACAATCCTACTTAGAATAAGAATAGGAATGTAAATAGTATATAGTATCTAACTTGGAAAAGGATTATAATGTTGTGTCCTAGTAGGAAAAGGAGTCTAATTTAATGTCTATAAATAGGGTTTTAATGTAATAATACTCCTCTTATATATTTCTCAGAGCTTGTTCAGTTAAGTATAAACATATTGTGAGTTTTGACATATTGCGGATTATCACATATCTGCTGCAGATCCCAATATGGATCTCTTACAATCCTACCCCGACGATGAAATCACTGAATGGCTGCCACTAAACCTTAATTCTCAATTTTCTGACCAAAATCCTTCACCTGATTCTTCCCCAATTAGAATGCTCTCCTTCTAAATCCGCTGCCTCTAAAGTTGACGACACCATGCTAACCCTACAAGTCACTGGCAAAGCTGCCAGAGCTCAATCCAAACCCCATGACCCGACCCAACACCTCGTTGGATTCAACTCGATGTATGAACAACTATGGGCACCAATTTACGGCCCAGCTCACCCGTACGCGAAGGACGGGTTAGCTCAAGGAATCAGAAATCACAAGCTAGGGTTCGTTGAGGTCGCGTCCATTGAATCCTTAGTATTTGACGAGCAGAATAATACTTTTCAGAAGTATGGGTATGCTGTTGAACCCTCCCAAAATAGCTACAGTGGTGATTTGGAAAAAATGAAGGGATGTGATGCTATTTCTCTGTACATAACCACAGCATGAACAGAAGAAGAGGAAGTTAGAGAAAAAGAAGGAGAAAATGGAGGAGGGTGTTGAGCAGGACGTGGATATGACGGAAGTTGAAAATCCGTCCACAGACATGTGGCAGGAAGAGTCCATGGGCTGGAAAGAAAGAAGGGTTGCAAGTTGAATTATCTGGGGAGCAGAAAAAGTATGCTAAGAAGAAGGTTGAAGAAAGAGGTGGTGATGAAAATAAGGTGGAGCCTATGGTTGAAAAGAGCACATTTCATGGTAAAGAGAAAAGGATTATCAGGGTAGGTCTTGGATCGCTCCACCAAAGGATGGAAAGGCTGCTAATGATCATTGTTATATACCAAAGAGATTAGTTCATAATTGGAGTGGACACACGAAAGGGGTTTCAGCTATTAGGTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAGATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAAGGATATTTGGTTTAGCAATGACGGGTCGAAGTTTTTGGCAGCTGGCTATGATAAGCACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACATTCTCGACAAGTAATATACCCTATGTAGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGAACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGATTGTGACTTATAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCTGGTTGTTATTAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTTGCCCCATCCAAATGGAAATTGGATTGCAGCACGAAGTCTGGATAACCAGATTCTTATTTGTAGTACGCGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTTGCTGGTTATGCCTGCCAGTTCAATTTCTCACCAGATGGATGGTTTGTCTTGTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAGGGTCTTCAGAACTCCCAAGTGTCATGAAGGGGTCTGTATTGGTGCAGAGTGGCATCCTCCGGAACAAAGTAAAGTTGCTACATGTGGTTGGGATGGTTTTATCAAGTAGTGGGACTAGTTTTGGGCAGCCATTTCTGTCTCTGCATTTATTGCGATGGCAACTTGTTCAATATCAGTTGGTTAGCAAGACTGTTCTATGCAATGGTTGGTCAACTCGTCTGGGACTGACAGTGGCGGAGCCAGAAATTTTATGAAGAGGGTCCAAAAATTAAACAACAAAAGCTCTTTTTAAAAAGGGGAAAAATTGTTGCAAGTGAGATCTGAATACATGAGCACTGACTCATTAAAGATGTTTAAACCCACGTTCAAGACGTCTTAACCCACTAGGCTATAACAACCTATTAAGTCAAGGGTATCCAAAATATGTTATTTAATCACTTCGTCTATCATTTTACTTGTATATGCTGTATTTTTTTCGGACGAAGGGTGTCCAGTTGGACACCCTGGCATACATTTGCCTACGCCACTTCTGGGACACGTCTAGCGGGACCAAGCTATGAATGAATTTGTTGGTCAATACTAGTCTTTACCTCTGTAAAACAGGTTTTCTTCTCAGATGCTTTTCTTTGTTGAGGTTGTACCAGTAGTTAATAACAGAGGACACACGCAACTTTCAGTCAAATTATGATATTCCATAAGACAAGTTAGTTGGAAAATCAGTTCCATTTTCCTCTGTCAATGTCATGCACGAATGAAGTTTATGTTGTATATTGTTTTTGTTATTTTCAATTTTCTTTTTTCGGCCTTCCAACATAGGATTGTGTATACCTATTCCTATTCTAATAATTACATTCTTACCCTGTTTTCATATTCAAAAATATGCTGATGTTTGAATGGTTTCTGTTGGTGATTTTATGAATGGGACAGCAAATAGAATTGAATGGATTGAAATGGCTTGCAATAATTTTACTGAGCATTGAGGACTTTAAATAGTCAACATAAAATACATAATCTGCATAGTTTGAAATTTAAAACAACCTAAAATATCTCAACAACTTAACTAAAATTCGAAATTCAACTTAACTACTGCAGTGACTTAAAGCATATTTCAACAGTTTCGGCCTTTGAAAATGCAGGAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCATGTAAGGTTCTTTCACTTGCTTCTACAAAATTGAGATTACATGAGATCAAGAATTTAGTAAATTCAATAAGAAGTTTGGGAATACAATTATTGGGAGGAAGAGATTTTTTGTCAAATTTTGTGATAGAACATCCAGCTATACCGCTGGTTTCTAAGAGTATCTCGTAACTAGCACCTGATGCAAGTTATGTTCATGTATAGAAACACTAGCGCTTAAATACAAGATTATGAATATACGAAGGATATGAAACAAAAGTATGTACTCGGAAATACCAAAAGTGTTCCTTATTTGTGATTCAAGTTCTCAATTTTGCATAATCAATTTTGCTGATAAATGGGGTGATAACCCGCTATATAAATAGGAAGGTTCCCAAAAAGTGTATGTACTGATCTTTGCAATTTGCTCTTTCCAGCCAAAGTACTATGGTAATGACTATGGGAAGATGTTGGAGATACTTCTGGGATGTAAAAACACGGGATGTACTTTCCTAGTGGGTGGTCGGAATGTTAATGGAATTTTCAAGGTACAGTAACAAACTCTCTGCAACCGTCATGTATCATAACATTCACATCTTTTCGGAACTCTTATGAATTCTATATCATGTCTATTTCTCTAGGTTCTTGAGGATTTCGACATCCCAGCAGAGCTAAAAGACATGTTTGTGCCTATACCAGTCGAGAAATTCCGTATGGATATATCATCCACTGAAATTCGAAAGACTCAAGGACTCTTGTAAGCCCATTTGCATTATTTTCACTCAGGTATCTGCATTGG---TT--C--CGTTTAAACAATTAGTTCTATCTATGTAACATGAAAATAAGCGCCAAAAAGGAAAAAAACCGAAAGC-TTATCCATTTTCATCGTTTGCTCTTTCCAGTCTCAACAGAACTGAGAATGTGTGGAATTGTTGTTCTCTGATTTGAGTTTCCTTACT-A-ACATATGTATATTAAACAGTTCTTGGTTTTAAACATAATCAGATTCTGTCAATT</genome_strand>
        <mrna_strand>AAATTGCAACTAG..................................................................................................................................TATTTGCGGTGGTGGATATCCATGTTTTGAGTTGTCAGCTGTCAATGCAGACAAACCTCCATTGGAAATACCTCAAATCAATGATCGTGTTAAACAATTTGAAAAAGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGACGGTTATAGTGTCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGGAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTACAT............................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGTACTATGGTAATGACTATGGAAAGATGTTGGAGATACTTCTGGGATGTAAAAACACGGGATGTACTTTCCTAGTGGGTGGTAGAAATGTTGATGGAACTTTCAAG..........................................................................................................................................................................................................GACTCTTGTAAGGCCGTTTGCATCATTTTCACTCAGGTATCTGCATTGGTACTTCGCTTCGTTTAAACAATTAGTTCTATCTATGTAACATGAAAATAAGCGCCAAAAAGGAAAAAAACAGAAAGCTTTATCCATTTTCATCGTTGGCTCTTTCCAGTTTCAACAGTAGTGAGAATGTGTGGAATTGTTGTTCTCTGAGTTGAGTTTCCTTACTAACACATATGTATATTAAACAGTTCTTGGTTTTAAACATAATAAGATTCTGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393408" ref_strand="+" ref_description="SGN-E393408 [TUS-38-P1](-)">
      <seq>cagctgtcaatgcagacaaacctccattggaaatacctcaaatcaatgatcgtgttaaacaatttgaaaaagttggaaagacggtcatagtatctaaccagccatatttttacaagaaagcagaactttttcctggaagtgcttttgtcattggtgcagacacagttgcaagacttgtgcatccaaagtactatggtaatgactatgggaagatgttggagatacttctgggatgtaaaaacacgggatgtactttcctagtgggtggtcggaatgttaatggaattttcaaggttcttgaggatttcgacatcccagcagagctaaaagacatgtttgtgcctataccagtcgagaaattccgtatggatatatcatccactgaaattcgaaagactcaaggactcttgtaagcccatttgcattattttcactcaggtatctgcattggttccgtttaaacaattagttctatctatgtaacatgaaaataagcgccaaaaaggaaaaaaaccgaaagcttatccattttcatcgtttgctctttccagtctcaacagaactgagaatgtgtggaattgttgttctctgatttgagtttccttactaacatatgtatattaaacagttcttggttttaaacataatcagattctgtcaattttatgcccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24845" stop="29908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25145" g_stop="25219" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25220" i_stop="28504" i_length="3285">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28505" g_stop="28611" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="182" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28612" i_stop="29023" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29024" g_stop="29134" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="293" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29135" i_stop="29227" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29228" g_stop="29617" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="683" r_length="390" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E393408" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25145" e_stop="25219"/>
          <exon e_start="28505" e_stop="28611"/>
          <exon e_start="29024" e_stop="29134"/>
          <exon e_start="29228" e_stop="29617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTGTCAATGCAGACAAACCTCCATTGGAAATACCTCAAATCAATGATCGTGTTAAACAATTTGAAAAAGTTGGTAAGATTCTAAAATATGATATTTTACACACACAGATACAGATAGTAAGAGTTGAAAAATGGCTACATGACCTGTTTTTTTTATTTCTTTTGTCAAGCTTCTCAAAGGCTTAGAATGCAAAACTGTACTTTGAGGTTGTTTCCTTCCAGAAACTATTCTAAAAATCGTCACTCAGTCTTTGATGCAAAACAAATAGGAAAACAAGAAAAGGAAGAGAAGTATATATATTCACTACCGTTTATCCATAGTGGTTTCATATCTAAGTATTATTACTAATAGAATAGGAATAGGTATACACAATCCTACTTAGAATAAGAATAGGAATGTAAATAGTATATAGTATCTAACTTGGAAAAGGATTATAATGTTGTGTCCTAGTAGGAAAAGGAGTCTAATTTAATGTCTATAAATAGGGTTTTAATGTAATAATACTCCTCTTATATATTTCTCAGAGCTTGTTCAGTTAAGTATAAACATATTGTGAGTTTTGACATATTGCGGATTATCACATATCTGCTGCAGATCCCAATATGGATCTCTTACAATCCTACCCCGACGATGAAATCACTGAATGGCTGCCACTAAACCTTAATTCTCAATTTTCTGACCAAAATCCTTCACCTGATTCTTCCCCAATTAGAATGCTCTCCTTCTAAATCCGCTGCCTCTAAAGTTGACGACACCATGCTAACCCTACAAGTCACTGGCAAAGCTGCCAGAGCTCAATCCAAACCCCATGACCCGACCCAACACCTCGTTGGATTCAACTCGATGTATGAACAACTATGGGCACCAATTTACGGCCCAGCTCACCCGTACGCGAAGGACGGGTTAGCTCAAGGAATCAGAAATCACAAGCTAGGGTTCGTTGAGGTCGCGTCCATTGAATCCTTAGTATTTGACGAGCAGAATAATACTTTTCAGAAGTATGGGTATGCTGTTGAACCCTCCCAAAATAGCTACAGTGGTGATTTGGAAAAAATGAAGGGATGTGATGCTATTTCTCTGTACATAACCACAGCATGAACAGAAGAAGAGGAAGTTAGAGAAAAAGAAGGAGAAAATGGAGGAGGGTGTTGAGCAGGACGTGGATATGACGGAAGTTGAAAATCCGTCCACAGACATGTGGCAGGAAGAGTCCATGGGCTGGAAAGAAAGAAGGGTTGCAAGTTGAATTATCTGGGGAGCAGAAAAAGTATGCTAAGAAGAAGGTTGAAGAAAGAGGTGGTGATGAAAATAAGGTGGAGCCTATGGTTGAAAAGAGCACATTTCATGGTAAAGAGAAAAGGATTATCAGGGTAGGTCTTGGATCGCTCCACCAAAGGATGGAAAGGCTGCTAATGATCATTGTTATATACCAAAGAGATTAGTTCATAATTGGAGTGGACACACGAAAGGGGTTTCAGCTATTAGGTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAGATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAAGGATATTTGGTTTAGCAATGACGGGTCGAAGTTTTTGGCAGCTGGCTATGATAAGCACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACATTCTCGACAAGTAATATACCCTATGTAGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGAACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGATTGTGACTTATAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCTGGTTGTTATTAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTTGCCCCATCCAAATGGAAATTGGATTGCAGCACGAAGTCTGGATAACCAGATTCTTATTTGTAGTACGCGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTTGCTGGTTATGCCTGCCAGTTCAATTTCTCACCAGATGGATGGTTTGTCTTGTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAGGGTCTTCAGAACTCCCAAGTGTCATGAAGGGGTCTGTATTGGTGCAGAGTGGCATCCTCCGGAACAAAGTAAAGTTGCTACATGTGGTTGGGATGGTTTTATCAAGTAGTGGGACTAGTTTTGGGCAGCCATTTCTGTCTCTGCATTTATTGCGATGGCAACTTGTTCAATATCAGTTGGTTAGCAAGACTGTTCTATGCAATGGTTGGTCAACTCGTCTGGGACTGACAGTGGCGGAGCCAGAAATTTTATGAAGAGGGTCCAAAAATTAAACAACAAAAGCTCTTTTTAAAAAGGGGAAAAATTGTTGCAAGTGAGATCTGAATACATGAGCACTGACTCATTAAAGATGTTTAAACCCACGTTCAAGACGTCTTAACCCACTAGGCTATAACAACCTATTAAGTCAAGGGTATCCAAAATATGTTATTTAATCACTTCGTCTATCATTTTACTTGTATATGCTGTATTTTTTTCGGACGAAGGGTGTCCAGTTGGACACCCTGGCATACATTTGCCTACGCCACTTCTGGGACACGTCTAGCGGGACCAAGCTATGAATGAATTTGTTGGTCAATACTAGTCTTTACCTCTGTAAAACAGGTTTTCTTCTCAGATGCTTTTCTTTGTTGAGGTTGTACCAGTAGTTAATAACAGAGGACACACGCAACTTTCAGTCAAATTATGATATTCCATAAGACAAGTTAGTTGGAAAATCAGTTCCATTTTCCTCTGTCAATGTCATGCACGAATGAAGTTTATGTTGTATATTGTTTTTGTTATTTTCAATTTTCTTTTTTCGGCCTTCCAACATAGGATTGTGTATACCTATTCCTATTCTAATAATTACATTCTTACCCTGTTTTCATATTCAAAAATATGCTGATGTTTGAATGGTTTCTGTTGGTGATTTTATGAATGGGACAGCAAATAGAATTGAATGGATTGAAATGGCTTGCAATAATTTTACTGAGCATTGAGGACTTTAAATAGTCAACATAAAATACATAATCTGCATAGTTTGAAATTTAAAACAACCTAAAATATCTCAACAACTTAACTAAAATTCGAAATTCAACTTAACTACTGCAGTGACTTAAAGCATATTTCAACAGTTTCGGCCTTTGAAAATGCAGGAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCATGTAAGGTTCTTTCACTTGCTTCTACAAAATTGAGATTACATGAGATCAAGAATTTAGTAAATTCAATAAGAAGTTTGGGAATACAATTATTGGGAGGAAGAGATTTTTTGTCAAATTTTGTGATAGAACATCCAGCTATACCGCTGGTTTCTAAGAGTATCTCGTAACTAGCACCTGATGCAAGTTATGTTCATGTATAGAAACACTAGCGCTTAAATACAAGATTATGAATATACGAAGGATATGAAACAAAAGTATGTACTCGGAAATACCAAAAGTGTTCCTTATTTGTGATTCAAGTTCTCAATTTTGCATAATCAATTTTGCTGATAAATGGGGTGATAACCCGCTATATAAATAGGAAGGTTCCCAAAAAGTGTATGTACTGATCTTTGCAATTTGCTCTTTCCAGCCAAAGTACTATGGTAATGACTATGGGAAGATGTTGGAGATACTTCTGGGATGTAAAAACACGGGATGTACTTTCCTAGTGGGTGGTCGGAATGTTAATGGAATTTTCAAGGTACAGTAACAAACTCTCTGCAACCGTCATGTATCATAACATTCACATCTTTTCGGAACTCTTATGAATTCTATATCATGTCTATTTCTCTAGGTTCTTGAGGATTTCGACATCCCAGCAGAGCTAAAAGACATGTTTGTGCCTATACCAGTCGAGAAATTCCGTATGGATATATCATCCACTGAAATTCGAAAGACTCAAGGACTCTTGTAAGCCCATTTGCATTATTTTCACTCAGGTATCTGCATTGGTTCCGTTTAAACAATTAGTTCTATCTATGTAACATGAAAATAAGCGCCAAAAAGGAAAAAAACCGAAAGCTTATCCATTTTCATCGTTTGCTCTTTCCAGTCTCAACAGAACTGAGAATGTGTGGAATTGTTGTTCTCTGATTTGAGTTTCCTTACTAACATATGTATATTAAACAGTTCTTGGTTTTAAACATAATCAGATTCTGTCAATTTTATGCCCAAATCGTTGACA</genome_strand>
        <mrna_strand>CAGCTGTCAATGCAGACAAACCTCCATTGGAAATACCTCAAATCAATGATCGTGTTAAACAATTTGAAAAAGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGTACTATGGTAATGACTATGGGAAGATGTTGGAGATACTTCTGGGATGTAAAAACACGGGATGTACTTTCCTAGTGGGTGGTCGGAATGTTAATGGAATTTTCAAG.............................................................................................GTTCTTGAGGATTTCGACATCCCAGCAGAGCTAAAAGACATGTTTGTGCCTATACCAGTCGAGAAATTCCGTATGGATATATCATCCACTGAAATTCGAAAGACTCAAGGACTCTTGTAAGCCCATTTGCATTATTTTCACTCAGGTATCTGCATTGGTTCCGTTTAAACAATTAGTTCTATCTATGTAACATGAAAATAAGCGCCAAAAAGGAAAAAAACCGAAAGCTTATCCATTTTCATCGTTTGCTCTTTCCAGTCTCAACAGAACTGAGAATGTGTGGAATTGTTGTTCTCTGATTTGAGTTTCCTTACTAACATATGTATATTAAACAGTTCTTGGTTTTAAACATAATCAGATTCTGTCAATTTTATGCCCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242286" ref_strand="+" ref_description="SGN-E242286 [cLEE-3-G19]">
      <seq>aaacctccattggaaatacctcaaatcaatgatcgtgttaaacaatttgaaaaagttggaaagacggtcatagtatctaaccagccatatttttacaagaaagcagaactttttcctggaagtgcttttgtcattggtgcagacacagttgcaagacttgtgcatccaaagtactatggtaatgactatgggaagatgttggagatacttctgggatgtaaaaacacgggatgtactttcctagtgggtggtcggaatgttaatggaattttcaaggttcttgaggatttcgacatcccagcagagctaaaagacatgtttgtgcctataccagtcgagaaattccgtatggatatatcatccactgaaattcgaaagactcaaggactcttgtaagcccatttgcattattttcactcaggtatctgcattggttccgtttaaacaattagttctatctatgtaacatgaaaataagcgccaaaaaggaaaaaaaccgaaagcttatccattttcatcgtttgctctttccagtctcaacagaactgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24862" stop="29801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25162" g_stop="25219" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25220" i_stop="28504" i_length="3285">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28505" g_stop="28611" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="165" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28612" i_stop="29023" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29024" g_stop="29134" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="276" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29135" i_stop="29227" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29228" g_stop="29501" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="550" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E242286" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25162" e_stop="25219"/>
          <exon e_start="28505" e_stop="28611"/>
          <exon e_start="29024" e_stop="29134"/>
          <exon e_start="29228" e_stop="29501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTCCATTGGAAATACCTCAAATCAATGATCGTGTTAAACAATTTGAAAAAGTTGGTAAGATTCTAAAATATGATATTTTACACACACAGATACAGATAGTAAGAGTTGAAAAATGGCTACATGACCTGTTTTTTTTATTTCTTTTGTCAAGCTTCTCAAAGGCTTAGAATGCAAAACTGTACTTTGAGGTTGTTTCCTTCCAGAAACTATTCTAAAAATCGTCACTCAGTCTTTGATGCAAAACAAATAGGAAAACAAGAAAAGGAAGAGAAGTATATATATTCACTACCGTTTATCCATAGTGGTTTCATATCTAAGTATTATTACTAATAGAATAGGAATAGGTATACACAATCCTACTTAGAATAAGAATAGGAATGTAAATAGTATATAGTATCTAACTTGGAAAAGGATTATAATGTTGTGTCCTAGTAGGAAAAGGAGTCTAATTTAATGTCTATAAATAGGGTTTTAATGTAATAATACTCCTCTTATATATTTCTCAGAGCTTGTTCAGTTAAGTATAAACATATTGTGAGTTTTGACATATTGCGGATTATCACATATCTGCTGCAGATCCCAATATGGATCTCTTACAATCCTACCCCGACGATGAAATCACTGAATGGCTGCCACTAAACCTTAATTCTCAATTTTCTGACCAAAATCCTTCACCTGATTCTTCCCCAATTAGAATGCTCTCCTTCTAAATCCGCTGCCTCTAAAGTTGACGACACCATGCTAACCCTACAAGTCACTGGCAAAGCTGCCAGAGCTCAATCCAAACCCCATGACCCGACCCAACACCTCGTTGGATTCAACTCGATGTATGAACAACTATGGGCACCAATTTACGGCCCAGCTCACCCGTACGCGAAGGACGGGTTAGCTCAAGGAATCAGAAATCACAAGCTAGGGTTCGTTGAGGTCGCGTCCATTGAATCCTTAGTATTTGACGAGCAGAATAATACTTTTCAGAAGTATGGGTATGCTGTTGAACCCTCCCAAAATAGCTACAGTGGTGATTTGGAAAAAATGAAGGGATGTGATGCTATTTCTCTGTACATAACCACAGCATGAACAGAAGAAGAGGAAGTTAGAGAAAAAGAAGGAGAAAATGGAGGAGGGTGTTGAGCAGGACGTGGATATGACGGAAGTTGAAAATCCGTCCACAGACATGTGGCAGGAAGAGTCCATGGGCTGGAAAGAAAGAAGGGTTGCAAGTTGAATTATCTGGGGAGCAGAAAAAGTATGCTAAGAAGAAGGTTGAAGAAAGAGGTGGTGATGAAAATAAGGTGGAGCCTATGGTTGAAAAGAGCACATTTCATGGTAAAGAGAAAAGGATTATCAGGGTAGGTCTTGGATCGCTCCACCAAAGGATGGAAAGGCTGCTAATGATCATTGTTATATACCAAAGAGATTAGTTCATAATTGGAGTGGACACACGAAAGGGGTTTCAGCTATTAGGTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAGATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAAGGATATTTGGTTTAGCAATGACGGGTCGAAGTTTTTGGCAGCTGGCTATGATAAGCACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACATTCTCGACAAGTAATATACCCTATGTAGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGAACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGATTGTGACTTATAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCTGGTTGTTATTAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTTGCCCCATCCAAATGGAAATTGGATTGCAGCACGAAGTCTGGATAACCAGATTCTTATTTGTAGTACGCGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTTGCTGGTTATGCCTGCCAGTTCAATTTCTCACCAGATGGATGGTTTGTCTTGTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAGGGTCTTCAGAACTCCCAAGTGTCATGAAGGGGTCTGTATTGGTGCAGAGTGGCATCCTCCGGAACAAAGTAAAGTTGCTACATGTGGTTGGGATGGTTTTATCAAGTAGTGGGACTAGTTTTGGGCAGCCATTTCTGTCTCTGCATTTATTGCGATGGCAACTTGTTCAATATCAGTTGGTTAGCAAGACTGTTCTATGCAATGGTTGGTCAACTCGTCTGGGACTGACAGTGGCGGAGCCAGAAATTTTATGAAGAGGGTCCAAAAATTAAACAACAAAAGCTCTTTTTAAAAAGGGGAAAAATTGTTGCAAGTGAGATCTGAATACATGAGCACTGACTCATTAAAGATGTTTAAACCCACGTTCAAGACGTCTTAACCCACTAGGCTATAACAACCTATTAAGTCAAGGGTATCCAAAATATGTTATTTAATCACTTCGTCTATCATTTTACTTGTATATGCTGTATTTTTTTCGGACGAAGGGTGTCCAGTTGGACACCCTGGCATACATTTGCCTACGCCACTTCTGGGACACGTCTAGCGGGACCAAGCTATGAATGAATTTGTTGGTCAATACTAGTCTTTACCTCTGTAAAACAGGTTTTCTTCTCAGATGCTTTTCTTTGTTGAGGTTGTACCAGTAGTTAATAACAGAGGACACACGCAACTTTCAGTCAAATTATGATATTCCATAAGACAAGTTAGTTGGAAAATCAGTTCCATTTTCCTCTGTCAATGTCATGCACGAATGAAGTTTATGTTGTATATTGTTTTTGTTATTTTCAATTTTCTTTTTTCGGCCTTCCAACATAGGATTGTGTATACCTATTCCTATTCTAATAATTACATTCTTACCCTGTTTTCATATTCAAAAATATGCTGATGTTTGAATGGTTTCTGTTGGTGATTTTATGAATGGGACAGCAAATAGAATTGAATGGATTGAAATGGCTTGCAATAATTTTACTGAGCATTGAGGACTTTAAATAGTCAACATAAAATACATAATCTGCATAGTTTGAAATTTAAAACAACCTAAAATATCTCAACAACTTAACTAAAATTCGAAATTCAACTTAACTACTGCAGTGACTTAAAGCATATTTCAACAGTTTCGGCCTTTGAAAATGCAGGAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCATGTAAGGTTCTTTCACTTGCTTCTACAAAATTGAGATTACATGAGATCAAGAATTTAGTAAATTCAATAAGAAGTTTGGGAATACAATTATTGGGAGGAAGAGATTTTTTGTCAAATTTTGTGATAGAACATCCAGCTATACCGCTGGTTTCTAAGAGTATCTCGTAACTAGCACCTGATGCAAGTTATGTTCATGTATAGAAACACTAGCGCTTAAATACAAGATTATGAATATACGAAGGATATGAAACAAAAGTATGTACTCGGAAATACCAAAAGTGTTCCTTATTTGTGATTCAAGTTCTCAATTTTGCATAATCAATTTTGCTGATAAATGGGGTGATAACCCGCTATATAAATAGGAAGGTTCCCAAAAAGTGTATGTACTGATCTTTGCAATTTGCTCTTTCCAGCCAAAGTACTATGGTAATGACTATGGGAAGATGTTGGAGATACTTCTGGGATGTAAAAACACGGGATGTACTTTCCTAGTGGGTGGTCGGAATGTTAATGGAATTTTCAAGGTACAGTAACAAACTCTCTGCAACCGTCATGTATCATAACATTCACATCTTTTCGGAACTCTTATGAATTCTATATCATGTCTATTTCTCTAGGTTCTTGAGGATTTCGACATCCCAGCAGAGCTAAAAGACATGTTTGTGCCTATACCAGTCGAGAAATTCCGTATGGATATATCATCCACTGAAATTCGAAAGACTCAAGGACTCTTGTAAGCCCATTTGCATTATTTTCACTCAGGTATCTGCATTGGTTCCGTTTAAACAATTAGTTCTATCTATGTAACATGAAAATAAGCGCCAAAAAGGAAAAAAACCGAAAGCTTATCCATTTTCATCGTTTGCTCTTTCCAGTCTCAACAGAACTGAG</genome_strand>
        <mrna_strand>AAACCTCCATTGGAAATACCTCAAATCAATGATCGTGTTAAACAATTTGAAAAAGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGTACTATGGTAATGACTATGGGAAGATGTTGGAGATACTTCTGGGATGTAAAAACACGGGATGTACTTTCCTAGTGGGTGGTCGGAATGTTAATGGAATTTTCAAG.............................................................................................GTTCTTGAGGATTTCGACATCCCAGCAGAGCTAAAAGACATGTTTGTGCCTATACCAGTCGAGAAATTCCGTATGGATATATCATCCACTGAAATTCGAAAGACTCAAGGACTCTTGTAAGCCCATTTGCATTATTTTCACTCAGGTATCTGCATTGGTTCCGTTTAAACAATTAGTTCTATCTATGTAACATGAAAATAAGCGCCAAAAAGGAAAAAAACCGAAAGCTTATCCATTTTCATCGTTTGCTCTTTCCAGTCTCAACAGAACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339071" ref_strand="+" ref_description="SGN-E339071 [cTOF-6-C21]">
      <seq>tcgtgttaaacaatttgaaaaagttggaaagacggtcatagtatctaaccagccatatttttacaagaaagcagaactttttcctggaagtgcttttgtcattggtgcagacacagttgcaagacttgtgcatccaaagtactatggtaatgactatgggaagatgttggagatacttctgggatgtaaaaacacgggatgtactttcctagtgggtggtcggaatgttaatggaattttcaaggttcttgaggatttcgacatcccagcagagctaaaagacatgtttgtgcctataccagtcgagaaattccgtatggatatatcatccactgaaattcgaaagactcaaggactcttgtaagcccatttgcattattttcactcaggtatctgcattggttccgtttaaacaattagttctatctatgtaacatgaaaataagcgccaaaaaggaaaaaaaccgaaagcttatccattttcatcgtttgctctttccagtctcaacagaactgagaatgtgtggaanttgttgttctctgatttgagtttccttactaacatatgtatattaaacagtttcttggttttaaacataatcagattctgtcaattttatgcccaaatcgttgacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="24894" stop="29918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25194" g_stop="25219" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25220" i_stop="28504" i_length="3285">
            <donor d_prob="0.862" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28505" g_stop="28611" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="133" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28612" i_stop="29023" i_length="412">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29024" g_stop="29134" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="244" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29135" i_stop="29227" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29228" g_stop="29625" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="644" r_length="400" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E339071" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25194" e_stop="25219"/>
          <exon e_start="28505" e_stop="28611"/>
          <exon e_start="29024" e_stop="29134"/>
          <exon e_start="29228" e_stop="29625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGTTAAACAATTTGAAAAAGTTGGTAAGATTCTAAAATATGATATTTTACACACACAGATACAGATAGTAAGAGTTGAAAAATGGCTACATGACCTGTTTTTTTTATTTCTTTTGTCAAGCTTCTCAAAGGCTTAGAATGCAAAACTGTACTTTGAGGTTGTTTCCTTCCAGAAACTATTCTAAAAATCGTCACTCAGTCTTTGATGCAAAACAAATAGGAAAACAAGAAAAGGAAGAGAAGTATATATATTCACTACCGTTTATCCATAGTGGTTTCATATCTAAGTATTATTACTAATAGAATAGGAATAGGTATACACAATCCTACTTAGAATAAGAATAGGAATGTAAATAGTATATAGTATCTAACTTGGAAAAGGATTATAATGTTGTGTCCTAGTAGGAAAAGGAGTCTAATTTAATGTCTATAAATAGGGTTTTAATGTAATAATACTCCTCTTATATATTTCTCAGAGCTTGTTCAGTTAAGTATAAACATATTGTGAGTTTTGACATATTGCGGATTATCACATATCTGCTGCAGATCCCAATATGGATCTCTTACAATCCTACCCCGACGATGAAATCACTGAATGGCTGCCACTAAACCTTAATTCTCAATTTTCTGACCAAAATCCTTCACCTGATTCTTCCCCAATTAGAATGCTCTCCTTCTAAATCCGCTGCCTCTAAAGTTGACGACACCATGCTAACCCTACAAGTCACTGGCAAAGCTGCCAGAGCTCAATCCAAACCCCATGACCCGACCCAACACCTCGTTGGATTCAACTCGATGTATGAACAACTATGGGCACCAATTTACGGCCCAGCTCACCCGTACGCGAAGGACGGGTTAGCTCAAGGAATCAGAAATCACAAGCTAGGGTTCGTTGAGGTCGCGTCCATTGAATCCTTAGTATTTGACGAGCAGAATAATACTTTTCAGAAGTATGGGTATGCTGTTGAACCCTCCCAAAATAGCTACAGTGGTGATTTGGAAAAAATGAAGGGATGTGATGCTATTTCTCTGTACATAACCACAGCATGAACAGAAGAAGAGGAAGTTAGAGAAAAAGAAGGAGAAAATGGAGGAGGGTGTTGAGCAGGACGTGGATATGACGGAAGTTGAAAATCCGTCCACAGACATGTGGCAGGAAGAGTCCATGGGCTGGAAAGAAAGAAGGGTTGCAAGTTGAATTATCTGGGGAGCAGAAAAAGTATGCTAAGAAGAAGGTTGAAGAAAGAGGTGGTGATGAAAATAAGGTGGAGCCTATGGTTGAAAAGAGCACATTTCATGGTAAAGAGAAAAGGATTATCAGGGTAGGTCTTGGATCGCTCCACCAAAGGATGGAAAGGCTGCTAATGATCATTGTTATATACCAAAGAGATTAGTTCATAATTGGAGTGGACACACGAAAGGGGTTTCAGCTATTAGGTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAGATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAAGGATATTTGGTTTAGCAATGACGGGTCGAAGTTTTTGGCAGCTGGCTATGATAAGCACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACATTCTCGACAAGTAATATACCCTATGTAGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGAACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGATTGTGACTTATAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCTGGTTGTTATTAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTTGCCCCATCCAAATGGAAATTGGATTGCAGCACGAAGTCTGGATAACCAGATTCTTATTTGTAGTACGCGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTTGCTGGTTATGCCTGCCAGTTCAATTTCTCACCAGATGGATGGTTTGTCTTGTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAGGGTCTTCAGAACTCCCAAGTGTCATGAAGGGGTCTGTATTGGTGCAGAGTGGCATCCTCCGGAACAAAGTAAAGTTGCTACATGTGGTTGGGATGGTTTTATCAAGTAGTGGGACTAGTTTTGGGCAGCCATTTCTGTCTCTGCATTTATTGCGATGGCAACTTGTTCAATATCAGTTGGTTAGCAAGACTGTTCTATGCAATGGTTGGTCAACTCGTCTGGGACTGACAGTGGCGGAGCCAGAAATTTTATGAAGAGGGTCCAAAAATTAAACAACAAAAGCTCTTTTTAAAAAGGGGAAAAATTGTTGCAAGTGAGATCTGAATACATGAGCACTGACTCATTAAAGATGTTTAAACCCACGTTCAAGACGTCTTAACCCACTAGGCTATAACAACCTATTAAGTCAAGGGTATCCAAAATATGTTATTTAATCACTTCGTCTATCATTTTACTTGTATATGCTGTATTTTTTTCGGACGAAGGGTGTCCAGTTGGACACCCTGGCATACATTTGCCTACGCCACTTCTGGGACACGTCTAGCGGGACCAAGCTATGAATGAATTTGTTGGTCAATACTAGTCTTTACCTCTGTAAAACAGGTTTTCTTCTCAGATGCTTTTCTTTGTTGAGGTTGTACCAGTAGTTAATAACAGAGGACACACGCAACTTTCAGTCAAATTATGATATTCCATAAGACAAGTTAGTTGGAAAATCAGTTCCATTTTCCTCTGTCAATGTCATGCACGAATGAAGTTTATGTTGTATATTGTTTTTGTTATTTTCAATTTTCTTTTTTCGGCCTTCCAACATAGGATTGTGTATACCTATTCCTATTCTAATAATTACATTCTTACCCTGTTTTCATATTCAAAAATATGCTGATGTTTGAATGGTTTCTGTTGGTGATTTTATGAATGGGACAGCAAATAGAATTGAATGGATTGAAATGGCTTGCAATAATTTTACTGAGCATTGAGGACTTTAAATAGTCAACATAAAATACATAATCTGCATAGTTTGAAATTTAAAACAACCTAAAATATCTCAACAACTTAACTAAAATTCGAAATTCAACTTAACTACTGCAGTGACTTAAAGCATATTTCAACAGTTTCGGCCTTTGAAAATGCAGGAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCATGTAAGGTTCTTTCACTTGCTTCTACAAAATTGAGATTACATGAGATCAAGAATTTAGTAAATTCAATAAGAAGTTTGGGAATACAATTATTGGGAGGAAGAGATTTTTTGTCAAATTTTGTGATAGAACATCCAGCTATACCGCTGGTTTCTAAGAGTATCTCGTAACTAGCACCTGATGCAAGTTATGTTCATGTATAGAAACACTAGCGCTTAAATACAAGATTATGAATATACGAAGGATATGAAACAAAAGTATGTACTCGGAAATACCAAAAGTGTTCCTTATTTGTGATTCAAGTTCTCAATTTTGCATAATCAATTTTGCTGATAAATGGGGTGATAACCCGCTATATAAATAGGAAGGTTCCCAAAAAGTGTATGTACTGATCTTTGCAATTTGCTCTTTCCAGCCAAAGTACTATGGTAATGACTATGGGAAGATGTTGGAGATACTTCTGGGATGTAAAAACACGGGATGTACTTTCCTAGTGGGTGGTCGGAATGTTAATGGAATTTTCAAGGTACAGTAACAAACTCTCTGCAACCGTCATGTATCATAACATTCACATCTTTTCGGAACTCTTATGAATTCTATATCATGTCTATTTCTCTAGGTTCTTGAGGATTTCGACATCCCAGCAGAGCTAAAAGACATGTTTGTGCCTATACCAGTCGAGAAATTCCGTATGGATATATCATCCACTGAAATTCGAAAGACTCAAGGACTCTTGTAAGCCCATTTGCATTATTTTCACTCAGGTATCTGCATTGGTTCCGTTTAAACAATTAGTTCTATCTATGTAACATGAAAATAAGCGCCAAAAAGGAAAAAAACCGAAAGCTTATCCATTTTCATCGTTTGCTCTTTCCAGTCTCAACAGAACTGAGAATGTGTGGAA-TTGTTGTTCTCTGATTTGAGTTTCCTTACTAACATATGTATATTAAACAG-TTCTTGGTTTTAAACATAATCAGATTCTGTCAATTTTATGCCCAAATCGTTGACAACCTTTTT</genome_strand>
        <mrna_strand>TCGTGTTAAACAATTTGAAAAAGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGTACTATGGTAATGACTATGGGAAGATGTTGGAGATACTTCTGGGATGTAAAAACACGGGATGTACTTTCCTAGTGGGTGGTCGGAATGTTAATGGAATTTTCAAG.............................................................................................GTTCTTGAGGATTTCGACATCCCAGCAGAGCTAAAAGACATGTTTGTGCCTATACCAGTCGAGAAATTCCGTATGGATATATCATCCACTGAAATTCGAAAGACTCAAGGACTCTTGTAAGCCCATTTGCATTATTTTCACTCAGGTATCTGCATTGGTTCCGTTTAAACAATTAGTTCTATCTATGTAACATGAAAATAAGCGCCAAAAAGGAAAAAAACCGAAAGCTTATCCATTTTCATCGTTTGCTCTTTCCAGTCTCAACAGAACTGAGAATGTGTGGAANTTGTTGTTCTCTGATTTGAGTTTCCTTACTAACATATGTATATTAAACAGTTTCTTGGTTTTAAACATAATCAGATTCTGTCAATTTTATGCCCAAATCGTTGACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710509" ref_strand="+" ref_description="SGN-E710509 [FA55CF08]">
      <seq>gtttttccctaagcatggtcatttgattttgtcagctgggatggatacaaaggtgaaaatttgggatgtttacaattccggtaaatgtatgaggacttacatggggcatacaaaggcagtgagggatatttggtttagcaatgacgggacgaagtttttgacagctggatatgataagtacattaagtattgggatacagaaacaggacaagtaattcaaacgttcacgacgggtaagataccctatgtggtgaggcttaatcctgatgaagataagcagaatgtacttttggctggtatgagtgataagaagattgtgcagtgggatataaacagtggacagattacacaagagtacgatcaacatctgggggcagttaatacaattacctttgtggataataacagaaggtttgtgacctctagtgatgataaatcactacgtgtttgggaatatggtattccggttgttatcaagtatataagtgaaccccatatgcattccatgccatctatttcgccccatccaaatgggaattggattgcagcacaaagtttggataaccagattcttatttacagtacgcgagagagatttcagctgaataaaaagaaaagatttgctggacacattgtcgctggttatgccctgccaggtcaatttctcacctgatggacggtttgtcttctcaagagatggtgaaggcagatgctggttttgggattggaaatcgtgtaaggtcttcaaaactctcaagtgtcatgatggggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="26333" stop="27703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26633" g_stop="27403" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E710509" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26633" e_stop="27403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAGATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAAGGATATTTGGTTTAGCAATGACGGGTCGAAGTTTTTGGCAGCTGGCTATGATAAGCACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACATTCTCGACAAGTAATATACCCTATGTAGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGAACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGATTGTGACTTATAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCTGGTTGTTATTAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTTGCCCCATCCAAATGGAAATTGGATTGCAGCACGAAGTCTGGATAACCAGATTCTTATTTGTAGTACGC--GAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTTGCTGGTTATG-CCTGCCAGTTCAATTTCTCACCAGATGGATGGTTTGTCTTGTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAGGGTCTTCAGAACTCCCAAGTGTCATGAAGGGGTCT</genome_strand>
        <mrna_strand>GTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAAATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAGGGATATTTGGTTTAGCAATGACGGGACGAAGTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACGTTCACGACGGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAAGATAAGCAGAATGTACTTTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAACAGAAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCGCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTACAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATGCCCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAAGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAAAACTCTCAAGTGTCATGATGGGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435023" ref_strand="+" ref_description="SGN-E435023 [STM-60-J10]">
      <seq>gtttttgacagctggatatgataagtacattaagtattgggatacagaaacaggacaagtaattcaaaccttcacgacaggtaagataccctatgtggtgaggcttaatcctgatgaggataagcagaatgtacttttggccggtatgagtgataagaagattgtgcagtgggatataaacagtggacagattacacaagagtacgatcaacatctgggggcagttaatacaattacctttgtggataataataggaggtttgtgacctctagtgatgataaatcactacgtgtttgggaatatggtattccggttgttatcaagtatataagtgaaccccatatgcattccatgccatctatttctccccatccaaatgggaattggattgcagcacaaagtttggataaccagattcttatttatagtacgcgagagagatttcagctgaataaaaagaaaagatttgctggacacattgtcgctggttatgcctgccaggtcaatttctcacctgatggacggtttgtcttctcaggagatggtgaaggcagatgctggttttgggattggaaatcgtgtaaggtcttcagaactctncagtgtcatgacggggtctgtattggtgcagagtggcatcctctggaacaaagtaaagttgctacttgtggttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="26486" stop="27761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26786" g_stop="27461" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E435023" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26786" e_stop="27461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGGCAGCTGGCTATGATAAGCACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACATTCTCGACAAGTAATATACCCTATGTAGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGAACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGATTGTGACTTATAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCTGGTTGTTATTAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTTGCCCCATCCAAATGGAAATTGGATTGCAGCACGAAGTCTGGATAACCAGATTCTTATTTGTAGTACGC--GAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTTGCTGGTTATGCCTGCCAGTTCAATTTCTCACCAGATGGATGGTTTGTCTTGTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAGGGTCTTCAGAACTCCCAAGTGTCATGAAGGGGTCTGTATTGGTGCAGAGTGGCATCCTCCGGAACAAAGTAAAGTTGCTACATGTGGTTGGGA</genome_strand>
        <mrna_strand>GTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACCTTCACGACAGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGTACTTTTGGCCGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCTCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTATAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATGCCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAGAACTCTNCAGTGTCATGACGGGGTCTGTATTGGTGCAGAGTGGCATCCTCTGGAACAAAGTAAAGTTGCTACTTGTGGTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408807" ref_strand="+" ref_description="SGN-E408807 [PPI-12-C12]">
      <seq>gtttttgacagctggatatgataagtacattaagtattgggatacagaaacaggacaagtaattcaaaccttcacgacaggtaagataccctatgtggtgaggcttaatcctgatgaggataagcagaatgtacttttggccggtatgagtgataagaagattgtgcagtgggatataaacagtggacagattacacaagagtacgatcaacatctgggggcagttaatacaattacctttgtggataataataggaggtttgtgacctctagtgatgataaatcactacgtgtttgggaatatggtattccggttgttatcaagtatataagtgaaccccatatgcattccatgccatctatttctccccatccaaatgggaattggattgcagcacaaagtttggataaccagattcttatttatagtacgcgagagagatttcagctgaaataaaagaaagatttgctggacacattgtcgctggttatgcctgccaggtcaatttctcacctgatggacggnttgtcttctcangagatggtgaaggcagatgctggttttgggaatggaaatcgtgtaaggcttcagaactctcagtgtcatgacggggtctgtattggtgcagagtggcatcctctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="26486" stop="27730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26786" g_stop="27430" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E408807" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26786" e_stop="27430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGGCAGCTGGCTATGATAAGCACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACATTCTCGACAAGTAATATACCCTATGTAGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGAACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGATTGTGACTTATAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCTGGTTGTTATTAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTTGCCCCATCCAAATGGAAATTGGATTGCAGCACGAAGTCTGGATAACCAGATTCTTATTTGTAGTACGC--GAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTTGCTGGTTATGCCTGCCAGTTCAATTTCTCACCAGATGGATGGTTTGTCTTGTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAGGGTCTTCAGAACTCCCAAGTGTCATGAAGGGGTCTGTATTGGTGCAGAGTGGCATCCTCCGG</genome_strand>
        <mrna_strand>GTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACCTTCACGACAGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGTACTTTTGGCCGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCTCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTATAGTACGCGAGAGAGATTTCAGCTGAAATAAAAG-AAAGATTTGCTGGACACATTGTCGCTGGTTATGCCTGCCAGGTCAATTTCTCACCTGATGGACGGNTTGTCTTCTCANGAGATGGTGAAGGCAGATGCTGGTTTTGGGAATGGAAATCGTGTAAGG-CTTCAGAACTCTC-AGTGTCATGACGGGGTCTGTATTGGTGCAGAGTGGCATCCTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347208" ref_strand="+" ref_description="SGN-E347208 [cTOF-25-B9]">
      <seq>aacaacaacaacttagtactctcatcacttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagaatcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttctataattagcctttcatgtcgagctaagatgattttatatggagtaacatggtcagtgaggagtcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38183" stop="39341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38483" g_stop="39041" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E347208" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38483" e_stop="39041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATAT</genome_strand>
        <mrna_strand>AACAACAACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAATCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309662" ref_strand="+" ref_description="SGN-E309662 [cLEY-26-N20]">
      <seq>aacaacaacttagtactctcatcacttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttctataattagcctttcatgtcgagctaagatgattttatatggagtaacatggtcagtgaggagtcatatagtcaatccgacttgtttgggactgagacgcatgtagttgttacatttgttgttgtattctataattagcttttatgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38186" stop="39422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38486" g_stop="39122" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E309662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38486" e_stop="39122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTA</genome_strand>
        <mrna_strand>AACAACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315744" ref_strand="+" ref_description="SGN-E315744 [cTOA-26-G14]">
      <seq>aacaacttagtactctcatcacttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttctataattagcctttcatgtcgagctaagatgattttatatggagtaacatggtcagtgaggagtcatatagtcaatccgacttgtttgggactgagacgcatgtagttgttacatttgttgttgtattctataattagcttttatgtttaagatattatgactaagatgtctattttcttgntgntgaagagtgtaatatatatcccttatgttgttcttcaattagtaatatattaatggtgggagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38189" stop="39522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38489" g_stop="39211" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="745"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E315744" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38489" e_stop="39211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAAT</genome_strand>
        <mrna_strand>AACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGNTGNTGAAGAGTGTAATATATATCCCTTATGTTGTTCTTCAATTAGTAATATATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308477" ref_strand="+" ref_description="SGN-E308477 [cLEY-21-G24]">
      <seq>ctcgtgccgaattcggcacgaggaacaacttagtactctcatcacttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttctataattagcctttcatgtcgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38184" stop="39296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38489" g_stop="38996" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="531" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E308477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38489" e_stop="38996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGC</genome_strand>
        <mrna_strand>AACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341572" ref_strand="+" ref_description="SGN-E341572 [cTOE-23-N21]">
      <seq>aacaacttagtactctcatcacttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38189" stop="39244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38489" g_stop="38944" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E341572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38489" e_stop="38944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTAC</genome_strand>
        <mrna_strand>AACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336612" ref_strand="+" ref_description="SGN-E336612 [cTOE-4-B5]">
      <seq>aacaacttagtactctcatcacttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38189" stop="39231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38489" g_stop="38931" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E336612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38489" e_stop="38931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATAT</genome_strand>
        <mrna_strand>AACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336490" ref_strand="+" ref_description="SGN-E336490 [cTOE-4-B6]">
      <seq>aacaacttagtactctcatcacttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38189" stop="39193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38489" g_stop="38893" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E336490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38489" e_stop="38893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATG</genome_strand>
        <mrna_strand>AACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214911" ref_strand="+" ref_description="SGN-E214911 [cLEC-78-B21]">
      <seq>acaacttagtactctcatcacttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttctataattagcctttcatgtcgagctaagatgattttatatggagtaacatggtcagtgaggagtcatatagtcaatccgacttgtttgggactgagacgcatgtagttgttacatttgttgttgtattctataattagcttttatgtttaagatattatgactaagatgtctattttcttgntgntgaagagtgtaatatatatccttaatgttgttcttcaattagtaatatattaatgttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38190" stop="39516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38490" g_stop="39218" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E214911" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38490" e_stop="39218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAG</genome_strand>
        <mrna_strand>ACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGNTGNTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341387" ref_strand="+" ref_description="SGN-E341387 [cTOE-23-M20]">
      <seq>aacttagtactcttatcacttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttctataattagcctttcatgtcgagctaagatgattttatatggagtaacatggtcagtgaggagtcatatagtcaatccgacttgtttgggactgagacgcatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38192" stop="39377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38492" g_stop="39077" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E341387" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38492" e_stop="39077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTA</genome_strand>
        <mrna_strand>AACTTAGTACTCTTATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336020" ref_strand="+" ref_description="SGN-E336020 [cTOE-6-J14]">
      <seq>ttagtactctcatcacttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttctataattagcctttcatgtcgagctaagatgattttatatggagtaacatggtcagtgaggagtcatatagtcaatccgacttgtttgggactgagacgcatgtagttgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38195" stop="39385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38495" g_stop="39085" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E336020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38495" e_stop="39085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTAC</genome_strand>
        <mrna_strand>TTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335385" ref_strand="+" ref_description="SGN-E335385 [cTOE-2-A10]">
      <seq>ttattactctcatcacttaccacacacacacattatatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaataaaaatttatgttccatttctattttattagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38195" stop="39163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38495" g_stop="38863" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E335385" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38495" e_stop="38863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCT</genome_strand>
        <mrna_strand>TTATTACTCTCATCACTTACCACACACACACATTATATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAATAAAAATTTATGTTCCATTTCTATTTTATTAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608284" ref_strand="+" ref_description="SGN-E608284 [24267]">
      <seq>ttacaacaaacacacatacacacactaatcatccaaaatgacactgaggtttgtggctatttttgcaattgtactttttttggttttggtcaagaaaactaaggtaacaaaagcatatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatccacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgccaagaaagttgcttctacttgtggttcccctttcccaaattgctaagaatactaatgtcccatttctatattattagccttttaatattggcctaagacgagtttatatggagtaacatggtacgaccagtactgaagagtcatagtcgacccctacctatttatgtagtagttgtttgttgtcttctataattggcctttaatgttgggctaagatgattttatatggagtaacatggtcagtgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38209" stop="39334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38502" g_stop="39034" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E608284" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38502" e_stop="39034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAG-AAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTA-CT-TGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGA</genome_strand>
        <mrna_strand>TTACAACAAACA-CACATACACACACTA-ATCATCCAAAATGACACTGAGGTTTGTGGCTATTTTTGCAATTGTACTTTTTTTGG-TTTTGGTCAAGAAAACTAAGGTAACAAAAGCATATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCCACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCCAAGAAAGTTGCTTCTACTTGTGGTTCCCCTTTCCCAAATTGCTAAG-AATACTAATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTAAGACGAGTTTATATGGAGTAACATGGTACGACCAGTACTG--AAGAGTC--ATAGTCGACCCCTACCTATTTATGTAGTAGTTGTTTGTTGTCTTCTATAATTGGCCTTTAATGTTGGGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339761" ref_strand="+" ref_description="SGN-E339761 [cTOE-16-N17]">
      <seq>tcatcacttaccacacacacaccattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaataccatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38204" stop="39244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38504" g_stop="38944" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E339761" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38504" e_stop="38944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCACTTACCACACACACA-CATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATA-CATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTAC</genome_strand>
        <mrna_strand>TCATCACTTACCACACACACACCATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACCATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301868" ref_strand="+" ref_description="SGN-E301868 [cLEW-25-A10]">
      <seq>acttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcgatagtgctttgcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttagggttcccctttcccaaattgctaagaaaaatatatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38209" stop="39201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38509" g_stop="38901" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E301868" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38509" e_stop="38901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACA</genome_strand>
        <mrna_strand>ACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCGATAGTGCTTTGCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTAGGGTTCCCCTTTCCCAAATTGCTAAGAAAAATATATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308957" ref_strand="+" ref_description="SGN-E308957 [cLEY-23-A10]">
      <seq>ttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttctataattagcctttcatgtcgagctaagatgattttatatggagtaacatggtcagtgaggagtcatatagtcaatccgacttgtttgggactgagacgcatgtagttgttacatttgttgttgtattctataattagcttttatgtttaagatattatgactaagatgtctattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38211" stop="39450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38511" g_stop="39150" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E308957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38511" e_stop="39150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTC</genome_strand>
        <mrna_strand>TTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336990" ref_strand="+" ref_description="SGN-E336990 [cTOE-5-P20]">
      <seq>ttaccacacacacacattagatcatccaaaatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtcttttcaaatacatgaaggatccaagactttaaaagatgattgcttctcctaatgcaaagaaagttgccactacttgtggttccactttcccaaattgctaagaaaaatttatgtcccatttctatattattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38211" stop="39160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38511" g_stop="38860" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E336990" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38511" e_stop="38860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAG</genome_strand>
        <mrna_strand>TTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTTCAAATACATGAAGGATCCAAGACTTTAAAAGATGATTGCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCACTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575753" ref_strand="+" ref_description="SGN-E575753 [35427]">
      <seq>caaacattaatatattactaattgaagaacaacattaaggatatattacactctgtcaataacaagaaaatacacatcttagttatatcttaaacataaaagctaattatagaatacaacaacaatgtaacaactacatacgcctcagtcccaaataagttggaactgactatatgagtactcctcactgaccatgttactccatataaaatcatcttagcccaacattaaaggccaattatagaagacaacaaacaactactacataaataggtaggggtcgactatgactcttcagtactggtcgtaccatgttactccatataaactcgtcttaggccaatattaaaaggctaataatatagaaatgggacattagtattcttagcaatttgggaaaggggaaccacaagtagaagcaactttcttggcattaggagaagaaatcatcttttgaagtcttggatccttcatgtatttgcaaagacatggcttttgttctttcaactttgagcaacaaattgaacttggagttgtggatgatgttatggcatttgcacatgcacttagttgcaatggattgcaactcacatatgcttttgttaccttagtttcttgaacaaaaaccaaaaaaaagtacaattgcaaaaatagccacaaacctcattgtccatttggatgatctagtgtgtgtatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="39516" stop="38215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39216" g_stop="38515" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E575753" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39216" e_stop="38515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACATTAATATATTACTAATTGAAGAACAACATTAAGGATATATATTACACTCT-TCAACAACAAGAAAATAGACATCTTAGTCATAATATCTTAAACATAAAAGCTAATTATAGAATACAACAACAAATGTAACAACTACATGCGTCTCAGTCCCAAACAAGTCGG-ATTGACTATAT--G-ACTCCTCACTGACCATGTTACTCCATATAAAATCATCTTAGCTCGACATGAAAGGCTAATTATAGAAGACAACAAACAACTACTAC--AAACAAGTAGGGGTCGACTATATGACTCTTTTCAGTACTGGTCTTACCATGTTACTCCATATAAACGCGTCGTAGGCCAATATTAAAAGGCTAATAATATAGAAATGGGACATAAATTTTTCTTAGCAATTTGGGAAAGGGGAACCACAAGTAGTGGCAACTTTCTTTGCATTAGGAGAAGAAATCATCTTTTGAAGTCTTGGATCCTTCATGTATTTGCAAAGACATGGCCTTTGTTCTTTCAACTTTGAGCAACAAATTGAACTTGGAGTTGTTGATGATGTTATGGCATTTGCACATGCACTTAGTTGCAATGGATTGCAACTCACATTTGCTTTTGTTACCTTAGTTTCTTGAACAAAAACC-AAGAAAAGTACAATTGCAAAAATAGACACAAACCTCATTGTCATTTTGGATGATCTAATGTGTGTGTGTG</genome_strand>
        <mrna_strand>CAAACATTAATATATTACTAATTGAAGAACAACATTAAGG--ATATATTACACTCTGTCAATAACAAGAAAATACACATCTTAGT--T-ATATCTTAAACATAAAAGCTAATTATAGAATACAACAAC-AATGTAACAACTACATACGCCTCAGTCCCAAATAAGTTGGAACTGACTATATGAGTACTCCTCACTGACCATGTTACTCCATATAAAATCATCTTAGCCCAACATTAAAGGCCAATTATAGAAGACAACAAACAACTACTACATAAATAGGTAGGGGTCGAC--TATGACTC--TTCAGTACTGGTCGTACCATGTTACTCCATATAAACTCGTCTTAGGCCAATATTAAAAGGCTAATAATATAGAAATGGGACAT-TAGTATTCTTAGCAATTTGGGAAAGGGGAACCACAAGTAGAAGCAACTTTCTTGGCATTAGGAGAAGAAATCATCTTTTGAAGTCTTGGATCCTTCATGTATTTGCAAAGACATGGCTTTTGTTCTTTCAACTTTGAGCAACAAATTGAACTTGGAGTTGTGGATGATGTTATGGCATTTGCACATGCACTTAGTTGCAATGGATTGCAACTCACATATGCTTTTGTTACCTTAGTTTCTTGAACAAAAACCAAAAAAAAGTACAATTGCAAAAATAGCCACAAACCTCATTGTCCATTTGGATGATCTAGTGTGTGTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338700" ref_strand="+" ref_description="SGN-E338700 [cTOE-21-A19]">
      <seq>tcggctcgaggacttactcatcacacacacattagatcatccattatgacaatgaggtttgtgtctatttttgcaattgtacttttcttggtttttgttcaagaaactaaggtaacaaaagcaaatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatcaacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttggttgttgtcttctataattagcctttcatgtcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38203" stop="39295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38518" g_stop="38995" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="500" r_length="478" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E338700" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38518" e_stop="38995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAG</genome_strand>
        <mrna_strand>ACACACACATTAGATCATCCATTATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGGTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610647" ref_strand="+" ref_description="SGN-E610647 [57813]">
      <seq>gatcatccaaaatgacaatgaggtttgtcgctatttatgcaattgtactttttttggtttttgttcaagaaactaaggtaacaaaagcatatgtgagttgcaatccattgcaactaagtgcatgtgcaaatgccataacatcatccacaactccaagttcaatttgttgctcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaacatgatttcttctcctaatgccaagaaagttgcttctacttgtggttcccctttcccaaattgctaagaatactaatgtcccatttctatattattagccttttaatattggcctaagacgagtttatatggagtaacatggtacgaccaatactgaagagtcatagtcgacccctacctgtttatgtagtagttgttgttgtcttctataattagcctttaatgttgggctaagatgattttatatggagtaacatggtcagtgaggagtactcatatagtcagttccaacttatttgggactgaggcgtatgtagttgttacattgttgttgtattctataattagcttttatgtttaagatataactaagatgtgtatttcttgtgttgaagagtgtaatatatccttaatgttgttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38230" stop="39493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38530" g_stop="39193" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E610647" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38530" e_stop="39193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTG-TT-TGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAG---TCATATAGTCA-ATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTC</genome_strand>
        <mrna_strand>GATCATCCAAAATGACAATGAGGTTTGTCGCTATTTATGCAATTGTACTTTTTTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCATATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCCACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAACATGATTTCTTCTCCTAATGCCAAGAAAGTTGCTTCTACTTGTGGTTCCCCTTTCCCAAATTGCTAAG-AATACTAATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTAAGACGAGTTTATATGGAGTAACATGGTACGACCAATACTG--AAGAGTC--ATAGTCGACCCCTACCTGTTTATGTAGTAGTTG-TTGTTGTCTTCTATAATTAGCCTTTAATGTTGGGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTACTCATATAGTCAGTTCCAACTTATTTGGGACTGAGGCGTATGTAGTTGTTACA-TTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATA-TA--ACTAAGATGTGTA-TTTCTTG-TGTTGAAGAGTGT-A-ATATATCCTTAATGTTGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368429" ref_strand="+" ref_description="SGN-E368429 [TUS-23-F21](-)">
      <seq>ctcaaagttgaaagaacaaaggccatgtctttgcaaatacataaaggatccaagacttcaaaaaatgatttcttctcctaatgcaaaaaaagttgccactacttgtggttcccctttcccaaattgctaaaaaaaatttatgtcccatttttatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaaaagtcatatagtcgacccccacttgtttgtagtagttgtttgttgttttctataattagcctttcatgtcgagctaaaatgattttatatggagtaacatggtcagtgaggagtcatatagtcaatccgacttgtttgggactgaaacgcaagtagttgttacatttgttgttgtattttataattagcttttatgtttaaaatattatgactaaaatgtttatttttttgttgttgaaaagtgtaatatatatccttaatgttgtttttcaattagtaatatattaatgttggagttaattatctttgaaaaatgttaattaatgttggttgttgtaattttagtttttttcaaaaaaaatgtgtttgatcaaatagtaaatgtgttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38399" stop="48007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38699" g_stop="39315" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39316" i_stop="39958" i_length="643">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39959" g_stop="39970" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="629" r_length="12" r_score="0.750"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39971" i_stop="40033" i_length="63">
            <donor d_prob="0.508" d_score="0.00"/>
            <acceptor a_prob="0.566" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40034" g_stop="40039" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="635" r_length="6" r_score="0.667"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40040" i_stop="40218" i_length="179">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.687" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40219" g_stop="40237" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="654" r_length="19" r_score="0.632"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E368429" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38699" e_stop="39315"/>
          <exon e_start="39959" e_stop="39970"/>
          <exon e_start="40034" e_stop="40039"/>
          <exon e_start="40219" e_stop="40237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGATCAAATAGTAAATGTGTTTTTTAATGATGTCTTCTATATGAATTATTTCATTATCTAACCAACTAATTAAAGTTACTTAACCCATGATTAATAGTACAAATTGCAATAATAGTTCAACATCAAGAAGGGCTAATTTCACATAACCCTCCACTTAGCTCGACTAATCTGAATTCGCATTATGTAGGCCTTATTAATGGGAAAGTGTTGCCTATCGGGAGTTCTCCATCCTCCAAATTTAAATTCAAAATCTCTGATTAAGAGTAAAGATATCTTATCCCTCGAAAAATTAATACCCCTTCATGGTTAGATGAAATTGATTTTAGATAGACAATTACCATTTCCAAACCAAGCTAGGAATATAATTTGAGAAGACTTTAGCAAGAAATTGTATTTTGCTTTCGAATACTTATAAAAGTATTTTCCATCTAAAATTTGCCATTTTATACAACAAACACAAACATTACGAGGATTCATCATGAACTGACAAGTTTTATGCTAGTTATCCGTCTACCGCAACCTAAAGACCAGCAATGTGAGCAAGCTCATATAAACGGAGTTAAATTGAGTCGTTACATCTGAAACAAATATTTTAGCACTCAAAATCTACACAAAATAATGCAACATTTTATCAAAACAAAATTGAAAAAATAACTAATCTTTTCACACTCAATAAAGAAAGTGACACCATTCTTTTCATTTCATAGTTTGTTCACTTACATAGAATTACAAAATAAACTGCAGAAAATTGTACCCTTTTTCAAGTTCACTACCAAGAAAATCATAGAGATCATAATCTACAATAACCTCCTCACAAAAGCTATTACAGACACGATGTGGACGCGAATTGGTGCTTAATACGAATTTACTTAAATTCCTACGAGCTACGTTCATATATAATATATTATGTATGTAACTATGGATGGTAGAAAACCAAACCAAGAACTA</genome_strand>
        <mrna_strand>CTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATAAAGGATCCAAGACTTCAAAAAATGATTTCTTCTCCTAATGCAAAAAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAAAAAAATTTATGTCCCATTTTTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAAAGTCATATAGTCGACCCCCACTTGTTTGTAGTAGTTGTTTGTTGTTTTCTATAATTAGCCTTTCATGTCGAGCTAAAATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAAACGCAAGTAGTTGTTACATTTGTTGTTGTATTTTATAATTAGCTTTTATGTTTAAAATATTATGACTAAAATGTTTATTTTTTTGTTGTTGAAAAGTGTAATATATATCCTTAATGTTGTTTTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTTTAGTTTTTTTCAAAAAAAATGTGTTTGATCAAATAGTAAATGTGTTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAAAAAA...............................................................AAAAAA...................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368430" ref_strand="+" ref_description="SGN-E368430 [TUS-23-F21]">
      <seq>tcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttctataattagcctttcatgtcgagctaagatgattttatatggagtaacatggtcagtgaggagtcatatagtcaatccgacttgtttgggactgagacgcatgtagttgttacatttgttgttgtattctataattagcttttatgtttaagatattatgactaagatgtctattttcttgttgttgaagagtgtaatatatatccttaatgttgttcttcaattagtaatatattaatgttggagttaattatctttgaaaaatgttaattaatgttggttgttgtaattctagttttcttcaagaaaaatgtgtttgatcaaatagtaaatgtgtttttttaaanaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38400" stop="39616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38700" g_stop="39315" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="645"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E368430" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38700" e_stop="39315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGATCAAATAGTAAATGTGTTTTTTA</genome_strand>
        <mrna_strand>TCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGATCAAATAGTAAATGTGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243403" ref_strand="+" ref_description="SGN-E243403 [cLED-34-G23]">
      <seq>tcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttctataattagcctttcatgtcgagctaagatgattttatatggagtaacatggtcagtgaggagtcatatagtcaatccgacttgtttgggactgagacgcatgtagttgttacatttgttgttgtattctataattagcttttatgtttaagatattatgactaagatgtctattttcttgttgttgaagagtgtaatatatatccttaatgttgttcttcaattagtaatatattaatgttggagttaattatctttgaaaaatgttaattaatgttggttgttgtaattctagttttcttcaagaaaaatgtgtttgatcaaatagtaaatgtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38400" stop="39611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38700" g_stop="39311" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E243403" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38700" e_stop="39311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGATCAAATAGTAAATGTGTTT</genome_strand>
        <mrna_strand>TCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGATCAAATAGTAAATGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243793" ref_strand="+" ref_description="SGN-E243793 [cLED-35-N5]">
      <seq>tcaaagttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttctataattagcctttcatgtcgagctaagatgattttatatggagtaacatggtcagtgaggagtcatatagtcaatccgacttgtttgggactgagacgcatgtagttgttacatttgttgttgtattctataattagcttttatgtttaagatattatgactaagatgtctattttcttgttgttgaagagtgtaatatatatccttaatgttgttcttcaattagtaatatattaatgttggagttaattatctttgaaaaatgttaattaatgttggttgttgtaattctagttttcttcaagaaaaatgtgtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38400" stop="39593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38700" g_stop="39293" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E243793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38700" e_stop="39293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGAT</genome_strand>
        <mrna_strand>TCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337556" ref_strand="+" ref_description="SGN-E337556 [cTOE-11-G8]">
      <seq>ttgaaagaacaaaggccatgtctttgcaaatacatgaaggatccaagacttcaaaagatgatttcttctcctaatgcaaagaaagttgccactacttgtggttcccctttcccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttctataattagcctttcatgtcgagctaagatgattttatatggagtaacatggtcagtgaggaatcatatagtcaatccgacttgtttgggactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38406" stop="39366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38706" g_stop="39066" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E337556" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38706" e_stop="39066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTG</genome_strand>
        <mrna_strand>TTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAATCATATAGTCAATCCGACTTGTTTGGGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318713" ref_strand="-" ref_description="SGN-E318713 [cTOB-9-H9]">
      <seq>cccaaattgctaagaaaaatttatgtcccatttctatattattagccttttaatattggcctacgacgcgtttatatggagtaacatggtaagaccagtactgaaaagagtcatatagtcgacccctacttgtttgtagtagttgtttgttgtcttcaataattagcctttcatgtcgagctaagatgattttatatggagtaacatggtcagtgaggagtcatatagtcaatccgacttgtttgggactgagacgcatgtagttgttacatttgttgttgtattcaataattagcttttatgtttaagatattatgactaagatgtctattttcttgttgttgaagagtgtaatatatatccttaatgttgttcttcaattagtaatatattaatgttggagttaattatctttgaaaaatgttaattaatgttggttgttgtaattctagttttcttcaagaaaaatgtgtttgatcaaatagtaaatgtgttttttaatgatgtcttctaaaaaaaaaaaacaaaaaaaaaaaaccgagactagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38516" stop="39634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38816" g_stop="39327" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="537"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E318713" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318713" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38816" e_stop="39327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGATCAAATAGTAAATGTGTTTTTTAATGATGTCTTCT</genome_strand>
        <mrna_strand>CCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCAATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCAATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGATCAAATAGTAAATGTGTTTTTTAATGATGTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336866" ref_strand="-" ref_description="SGN-E336866 [cTOE-5-E2]">
      <seq>tgtttgtagaagttgtttgttgtcttctataataagcctttcatgtcgagctaaaatgattttatatggagtaacatggtcagtgaggagtcatatagtcaatccaacttgtttgggattgaaacgcatgtagttgttacatttgttgttgtattatataattagcttttatgtttaagatattatgantaaaatgtttattttcttgttgttgaagagtgtaatatatatccttaatgttgtttttcaattagtaatatattaatgttggagtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagacagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38646" stop="48007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38946" g_stop="39221" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39222" i_stop="40033" i_length="812">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.566" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40034" g_stop="40039" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="282" r_length="6" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40040" i_stop="41709" i_length="1670">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.769" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41710" g_stop="41727" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="300" r_length="18" r_score="0.556"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41728" i_stop="41829" i_length="102">
            <donor d_prob="0.790" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41830" g_stop="41858" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="328" r_length="28" r_score="0.655"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E336866" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336866" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38946" e_stop="39221"/>
          <exon e_start="40034" e_stop="40039"/>
          <exon e_start="41710" e_stop="41727"/>
          <exon e_start="41830" e_stop="41858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGATCAAATAGTAAATGTGTTTTTTAATGATGTCTTCTATATGAATTATTTCATTATCTAACCAACTAATTAAAGTTACTTAACCCATGATTAATAGTACAAATTGCAATAATAGTTCAACATCAAGAAGGGCTAATTTCACATAACCCTCCACTTAGCTCGACTAATCTGAATTCGCATTATGTAGGCCTTATTAATGGGAAAGTGTTGCCTATCGGGAGTTCTCCATCCTCCAAATTTAAATTCAAAATCTCTGATTAAGAGTAAAGATATCTTATCCCTCGAAAAATTAATACCCCTTCATGGTTAGATGAAATTGATTTTAGATAGACAATTACCATTTCCAAACCAAGCTAGGAATATAATTTGAGAAGACTTTAGCAAGAAATTGTATTTTGCTTTCGAATACTTATAAAAGTATTTTCCATCTAAAATTTGCCATTTTATACAACAAACACAAACATTACGAGGATTCATCATGAACTGACAAGTTTTATGCTAGTTATCCGTCTACCGCAACCTAAAGACCAGCAATGTGAGCAAGCTCATATAAACGGAGTTAAATTGAGTCGTTACATCTGAAACAAATATTTTAGCACTCAAAATCTACACAAAATAATGCAACATTTTATCAAAACAAAATTGAAAAAATAACTAATCTTTTCACACTCAATAAAGAAAGTGACACCATTCTTTTCATTTCATAGTTTGTTCACTTACATAGAATTACAAAATAAACTGCAGAAAATTGTACCCTTTTTCAAGTTCACTACCAAGAAAATCATAGAGATCATAATCTACAATAACCTCCTCACAAAAGCTATTACAGACACGATGTGGACGCGAATTGGTGCTTAATACGAATTTACTTAAATTCCTACGAGCTACGTTCATATATAATATATTATGTATGTAACTATGGATGGTAGAAAACCAAACCAAGAACTAGAACTCTTCATGTTTGAGTTCCTCATCGAAACATCTTGTTCGAATTGTAAATGCAACGGACCTTTTAGAAGAAACACGGATTCAGCCTTTTCTTTCAGTAGATTCGGTATAGTTAGATGCTGCCATTCCAAGTCCTTCGTTTTGGTGTTTTTGCCATCCACCGGTATCAGCCTTCGAGTGTATCCAGTAGTAGAAAATGGATCCAATCATTGATAATAACGTCAGGGCAGCGCCAGCAGCAAATACACCTTTTCGGAGGGTGGAACATGACAAGTTTTCAACTTGGAAAACCGCGCGATACTTTGTATGGTATGCATTCTTTGCTGATCCTGCCAATAAGCATGCTTCTGCTCCTAAAAAACTAACCCTGTTTGTCATTCAAAAGAGGAAGTAAGCAATAGATATATGTTGTTCTACTACCATCAGTTTCCATGGCTGCTTCAGACAGGGAGGTTAAGAACTGAAAAAGTAATTATCGTGACAACGACCTTAGACTATGGAGCCAAAAGGTAAAAAGAATGTGATAGAGAAGAGATGTGTATAAAGTAATGGAAGTATCTCTGAGAATTTTGCAAGTATTTTCACTCCCCTATCCCTTGCGCTAGCACTTGGCCGTAGATTCCCGGAGTAGTTTCTGTATAATCTTCAAATATCTGTTTGACCATCAAATTTGATCAGATATTCAAATATTTCAAGATTGCAAAACTAGCTCGACTAGTTTCGGGTTTTTAGGACTTCCACAACTTCAAATTCCAAAAATTACAACACCAAAAACATAAATTTTCAAGTTTCGACTACAAAAACTATGGCCAAACGAGCGCGAAACATTTTCTTGGGAACAAAGTTGAATGTGTTCTTATTTCTTCATATGTTTATTTCACATGTCTTTGCCTATTGTTTGCATCTTAACTTACATCTTCATTATTTCAAGTAATGGATCATTAATCTCAATTTTGACATCTAAATATCACTTTATGTTCTTTTACATACGAGTGTTCATTAAATCTTTAGTTGCTTTTATCCACTACCGAGAACACCATGTTAACATCGAAACCAATGAGGATAGCTTCACGCACTAGCCAATTATCTAAACTAGATATCACCTATCATCACCACATTCAATAATCGCCATCAGAACCGTCCGTGTTTCTGCTAGGGCAGTGTCTATGCTAGTTGTCTAAAACAACTGTTTTACTTGTCTCTAAGTCTATTAAACAACAATATTACTACACCTTACTCCCAAAGGAAGTAGGGGCCGATGGTATGAATCAGTTCTGCTCTAATCAGGCCTAACTTATTTGTGCCAACTCCATCAAACTAGTGGTAGAATTTACTTGAGCCAAGGTTCTTTCGGAAACAGTTTCTATGTCTTCACAGGGTAGGGGTAAGGTGTGCGTACACGCCACTCTCCCACGCCACACTTGTGGTATTACATTGGGTATGTTGATGTTTTCATCTCTCTCCTAATTTAGAAACACTAACCGACAAAGGTGAAGCAATGTTTTAAAGCTTATGGGTTCGGAATTCTAAATTCTTTCAAGTTAATGGGTTCTAAGCTAAATAATTTGTACATATTTAACACATTTCTTCAGGAAAAAAATACAAAATTTGGACTAAAGCT</genome_strand>
        <mrna_strand>TGTTTGTAGAAGTTGTTTGTTGTCTTCTATAATAAGCCTTTCATGTCGAGCTAAAATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCAACTTGTTTGGGATTGAAACGCATGTAGTTGTTACATTTGTTGTTGTATTATATAATTAGCTTTTATGTTTAAGATATTATGANTAAAATGTTTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTTTTCAATTAGTAATATATTAATGTTGGAGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA......................................................................................................AAAAAAAAAAAAAAAACTCGA-GACAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539943" ref_strand="-" ref_description="SGN-E539943 [TUS-59-P10]">
      <seq>tgtgtatatgaaacggatgcttctccagcctatggattggcggcatttgtttacttctgattagccaaacgttggttaacggcatacccaagtgcttgtgttttggaagaggaatgatgggtggcagttctactacttgtgccattttcttttttgtcttctcctgggttagttttttaggagcagaagcatgcttattggcaggatcagcaaagaatgcataccatacaaagtatcgcgcggttttccaagttgaaaacttgtcatgttccaccctccgaaaaggtgtatttgctgctggcgctgccctgacgttattatcaatgattggatccattttctactactggatacactcgaaggctgataccggtggatggcaaaaacaccaaaacgaaggacttggaatggcagcatctaactataccgaatctactgaaagaaaaggctgaatccgtgtttcttctaaaaggtccgttgcatttacaattcgaacaagatgtttcgatgaggaactcaaacatgaagagttctagttcttggtttggttttctaccatccatagttacatacataatatattatatatgaacgtagctcgtaggaatttaagtaaattcgtattaagcaccaattcgcgtccacatcgtgtctgtaatagcttttgtgaggaggttattgtagattatgatctctatgattttcttggtagtgaacttgaaaaagggtacaattttctgcagtttattttgtaattctatgtaagtgaacaaactatgaaatgaaaagaatggtgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="43502" stop="39672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43202" g_stop="43036" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43035" i_stop="40605" i_length="2431">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40604" g_stop="39972" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="799" r_length="633" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E539943" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539943" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43202" e_stop="43036"/>
          <exon e_start="40604" e_stop="39972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTGGTAAGAACATAGTTACTGTTCTCTCTTACTTTAAGTTTATTTACATTCTTTGTCTGGTTGTAGTGCGTTTACCCCCTAGAGTTTACGAAATACTCACATTATTTAAGCAATGAGATTGTTTTTGTTGATTGGCTTATTGTTATTTGTTAGTTTAAGATTGATACTTCTGCACTTATAAACTAAAGAAGGCGTCATTCCTTGTTGAAACTTAATCTTGCCATAGAGTAACCGTATGTTGGATTTATTGGAGACTCATCGGTGAAGAAGCCCGAGGATGATTTTGTGACAAAGAAGAATGAAAAAGGTTCAACTGTAATTTACAGATGGAAAAAGAGAACTAACAAAATCCGTTTAAACTTTTTGTATACTTTGTGTTGTCTGAAAGGCACAAAATCCGTTTAAACTTTTTCTCCGTAGTTGGGTGCTAAGTATTCCTGAGTTCCATTGGTCACCTTACTCTTACTGTCTGTTTGCACCATTTGATGAAGTTCTGTACCCCTTCCTTCCTTTCACGGTTTAGATTCAATTTGTTTGAGCCAAAATGGTGCCACTAGATAAATTCTGATCTGTATAGCATGCATTAAGGTTTGATCGTACTTCTGCAATAAGTAAAGAAATGCTCAAAACCAATATCTTTTCTTTTTTGAGATAAAAAAAAAAGTTATATTGGTTTTGAGCATTTCTTTACCTATTGCACAAGTACGATCACAATTTAGTATGACGCTATAAAGGTCTTCATCACCGAGTAAATTGATTCATTAAGTTGTTTGTGAGTAGCTGTGACACGTGTAACAAGGTGTAAACCCTTAATGGATCTTTAAATTGCCACTTGCCCAATCTTACCGGCACTAAATAAGTGGTTGAATAGATAAAGATAATGAAAATAGATTGGAGTTCTGCTGAGGTGAGTTTTGTTTTTTGTAAAACAGTTAGTCTGGTTATCTCATGATGTATGTATACACAAGTTAATTAAGAAGTAACATGAAAAGTGATTTCCATATATATTGTAACTGAATTTGAAAGAAGGAACTTCAACAATCTGTGATGATAGTTTTTTGCCTTTCGGAAGTATACATGTGTAACTTTCAGCCACTTCTGCTTAGTGTTTGCTATACATTTGTGATCAGTTTGCAGGGGTAGAGCTAGTGTGGAGCGTGTGGGTTCGGCCAAATCCAATAGCTTTAGTCCAAATTTTGTATTTTTTTCCTGAAGAAATGTGTTAAATATGTACAAATTATTTAGCTTAGAACCCATTAACTTGAAAGAATTTAGAATTCCGAACCCATAAGCTTTAAAACATTGCTTCACCTTTGTCGGTTAGTGTTTCTAAATTAGGAGAGAGATGAAAACATCAACATACCCAATGTAATACCACAAGTGTGGCGTGGGAGAGTGGCGTGTACGCACACCTTACCCCTACCCTGTGAAGACATAGAAACTGTTTCCGAAAGAACCTTGGCTCAAGTAAATTCTACCACTAGTTTGATGGAGTTGGCACAAATAAGTTAGGCCTGATTAGAGCAGAACTGATTCATACCATCGGCCCCTACTTCCTTTGGGAGTAAGGTGTAGTAATATTGTTGTTTAATAGACTTAGAGACAAGTAAAACAGTTGTTTTAGACAACTAGCATAGACACTGCCCTAGCAGAAACACGGACGGTTCTGATGGCGATTATTGAATGTGGTGATGATAGGTGATATCTAGTTTAGATAATTGGCTAGTGCGTGAAGCTATCCTCATTGGTTTCGATGTTAACATGGTGTTCTCGGTAGTGGATAAAAGCAACTAAAGATTTAATGAACACTCGTATGTAAAAGAACATAAAGTGATATTTAGATGTCAAAATTGAGATTAATGATCCATTACTTGAAATAATGAAGATGTAAGTTAAGATGCAAACAATAGGCAAAGACATGTGAAATAAACATATGAAGAAATAAGAACACATTCAACTTTGTTCCCAAGAAAATGTTTCGCGCTCGTTTGGCCATAGTTTTTGTAGTCGAAACTTGAAAATTTATGTTTTTGGTGTTGTAATTTTTGGAATTTGAAGTTGTGGAAGTCCTAAAAACCCGAAACTAGTCGAGCTAGTTTTGCAATCTTGAAATATTTGAATATCTGATCAAATTTGATGGTCAAACAGATATTTGAAGATTATACAGAAACTACTCCGGGAATCTACGGCCAAGTGCTAGCGCAAGGGATAGGGGAGTGAAAATACTTGCAAAATTCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTTTCAGTTCTTAACCTCCCTGTCTGAAGCAGCCATGGAAACTGATGGTAGTAGAACAACATATATCTATTGCTTACTTCCTCTTTTGAATGACAAACAGGGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATGAAGAGTTCTAGTTCTTGGTTTGGTTTTCTACCATCCATAGTTACATACATAATATATTATATATGAACGTAGCTCGTAGGAATTTAAGTAAATTCGTATTAAGCACCAATTCGCGTCCACATCGTGTCTGTAATAGCTTTTGTGAGGAGGTTATTGTAGATTATGATCTCTATGATTTTCTTGGTAGTGAACTTGAAAAAGGGTACAATTTTCTGCAGTTTATTTTGTAATTCTATGTAAGTGAACAAACTATGAAATGAAAAGAATGGTGTCA</genome_strand>
        <mrna_strand>TGTGTATATGAAACGGATGCTTCTCCAGCCTATGGATTGGCGGCATTT-GTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATACCCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATGAAGAGTTCTAGTTCTTGGTTTGGTTTTCTACCATCCATAGTTACATACATAATATATTATATATGAACGTAGCTCGTAGGAATTTAAGTAAATTCGTATTAAGCACCAATTCGCGTCCACATCGTGTCTGTAATAGCTTTTGTGAGGAGGTTATTGTAGATTATGATCTCTATGATTTTCTTGGTAGTGAACTTGAAAAAGGGTACAATTTTCTGCAGTTTATTTTGTAATTCTATGTAAGTGAACAAACTATGAAATGAAAAGAATGGTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288176" ref_strand="+" ref_description="SGN-E288176 [cLES-7-N13]">
      <seq>gacaccattcttttcatttcatagtttgttcacttacatagaattacaaaataaactgcagaaaattgtaccctttttcaagttcactaccaagaaaatcatagagatcataatctacaataacctcctcacaaaagctattacagacacgatgtggacgcgaattggtgcttaatacgaatttacttaaattcctacgagctacgttcatatataatatattatgtatgtaactatggatggtagaaaaccaaaccaagaactagaactcttcatgtttgagttcctcatcgaaacatcttgttcgaattgtaaatgcaacggaccttttagaagaaacacggattcagccttttctttcagtagattcggtatagttagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="39673" stop="40655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39973" g_stop="40355" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E288176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39973" e_stop="40355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACCATTCTTTTCATTTCATAGTTTGTTCACTTACATAGAATTACAAAATAAACTGCAGAAAATTGTACCCTTTTTCAAGTTCACTACCAAGAAAATCATAGAGATCATAATCTACAATAACCTCCTCACAAAAGCTATTACAGACACGATGTGGACGCGAATTGGTGCTTAATACGAATTTACTTAAATTCCTACGAGCTACGTTCATATATAATATATTATGTATGTAACTATGGATGGTAGAAAACCAAACCAAGAACTAGAACTCTTCATGTTTGAGTTCCTCATCGAAACATCTTGTTCGAATTGTAAATGCAACGGACCTTTTAGAAGAAACACGGATTCAGCCTTTTCTTTCAGTAGATTCGGTATAGTTAGAT</genome_strand>
        <mrna_strand>GACACCATTCTTTTCATTTCATAGTTTGTTCACTTACATAGAATTACAAAATAAACTGCAGAAAATTGTACCCTTTTTCAAGTTCACTACCAAGAAAATCATAGAGATCATAATCTACAATAACCTCCTCACAAAAGCTATTACAGACACGATGTGGACGCGAATTGGTGCTTAATACGAATTTACTTAAATTCCTACGAGCTACGTTCATATATAATATATTATGTATGTAACTATGGATGGTAGAAAACCAAACCAAGAACTAGAACTCTTCATGTTTGAGTTCCTCATCGAAACATCTTGTTCGAATTGTAAATGCAACGGACCTTTTAGAAGAAACACGGATTCAGCCTTTTCTTTCAGTAGATTCGGTATAGTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708724" ref_strand="+" ref_description="SGN-E708724 [FA36CD07]">
      <seq>attcgaataaaagtaaagtaaaagcttcccacttacaaaaaaataagtatagtgaatttgagaagttggtttttgcagtgtggtcagtaatggcggtttctattcctgttcttgtgattgttattgcacttcatctcattgcttttgttcttgctgtcggtgctgaacgacgtcgtagcacggcgaaagttgtaccggatgagtatgatgaacgggcgtactgtgtatatggaacggatgcttctacagcctatggattggcggcatttggtttacttctgattagccaaacgttggttaacggcattaccaagtgcttgtgttttggaagaggaatgatgggtggcagttctactacttgtgccattttcttttttgtcttctcctgggttagttttttaggagcagaagcatgcttattggcaggatcagcaaagaatgcataccatacaaagtatcgcgcggttttccaagttgaaaacttgtcatgttccaccctccgaaaaggtgtatttgctgctggcgctgccctgacgttattatcaatgattggatccattttctactactggatacactcgaaggctgataccggtggatggcaaaaacaccaaaacgaaggacttggaatggcagcatctaactataccgaatctactgaaagaaaaggctgaatccgtgtttcttctaaaaggtccgttgcatttacaattcgaacaagatgtttcgatgaggaactcaaacatgaagagttctagttcttggtttggttttctaccatccatagttacatacctaatatattatatatgaacgtagctcngtagaattttagtaaattcgtattaaacaccaattcgcgtccacatcgtgtctgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44854" stop="39812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44554" g_stop="44373" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44372" i_stop="43242" i_length="1131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43241" g_stop="43036" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="388" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43035" i_stop="40605" i_length="2431">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40604" g_stop="40112" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="881" r_length="493" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E708724" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44554" e_stop="44373"/>
          <exon e_start="43241" e_stop="43036"/>
          <exon e_start="40604" e_stop="40112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGAATAAAAGTAAAGTAAAAGCTTCCCACTTACAAAAAAATAAGTATAGTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACGGTACCCTTTTGAGCTTATCTTATATTTTCTATGTTATTTTTTTTTTTTTGCTTTTTTTGATTCTGGGTATGGTTAAAGATTGGATTTTTTGGTTGTTTGTTTCTTGGAGATAGGTAAAGATTGTTTTTTTTGTGTGTGTGTTGGTGTGTTTTTGTTGCAGTGTTTGGTTAAAGATTGGGATTGTGTTGGATGTTTGTGGTTTCTTCTGTTGTTAAAGATTGGATTTTTGGGTGTTTTTTGTTTCTGGGTATAGTTAAAGATTGGATCTTCATGGATGTTTTTGGTTTCCTGTGTTGCTAAAGATTGATTTTTTTTTTTTGGGTGTTTGGTGTTTCTGGGTATAGTTAAAGATAGTTTTTTTGGTTCTTAGTTTTTGGATATAGGTAAAAGACTGACTTTTTGTGTTAAATGTGTTATTTTGTCTCTGTTTGTAGTTTAAAGCTTGGACTGTGTTGGATGTTTTTGGTTTCTTGTGTAGCTAAGGATTGATTTGTTTCTTTGGGGTGTTTGGTATTCCTGGATGGTGTTGAATAGTAAAATTGAACTTTTTGGTGTTGTAAAGATTGAGTTTTTGGTTTTATTTGCTAATGAGTCTTCCTTGAGCCAAGGGTCTGTTGGAGACCACCTCTCTACCTTCTAAGGTAGGGGAGTAAAGTCTGCGTATATTCTACTCCTATGTTGCTCGTACTCTACATAAATGTTGCCGCACCATGTTGTATCCTCCAAAAATGCACTACTTTGGAAGGATCTGACACGCACCATTGGCATTTATGAAGAGTTTAAGCAAACATAGCTCTACTCTCCCCATACTTGGATTGCAGAGGTATGTTGTTGTTGTTGCTAATGAGTCTAGTTGAGGATCAAATGTTTTTGGTGTTCTGTTTTCAGGGGTATAGTTAAGATTTGAACTTCTTTTGGGTTTTTGAATATAGTTGGATGATTGGTAAGGATCACATAGCCAACCCCAACTTGCTTGGAATTTGAGGCAAATTAATTGTTGTTGTTGTTTGAGTTGGGATTGAGGCGTAGTACTAGTAGTAATTGTTGTTTCTCTGTAGTTAGTTTCCTTTTTATGGGGTTCTTTTTGGTAGTCAAAGATGGAGTTTTGAATGTTGTTTTGTGTTTGTGAAGGCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTGGTAAGAACATAGTTACTGTTCTCTCTTACTTTAAGTTTATTTACATTCTTTGTCTGGTTGTAGTGCGTTTACCCCCTAGAGTTTACGAAATACTCACATTATTTAAGCAATGAGATTGTTTTTGTTGATTGGCTTATTGTTATTTGTTAGTTTAAGATTGATACTTCTGCACTTATAAACTAAAGAAGGCGTCATTCCTTGTTGAAACTTAATCTTGCCATAGAGTAACCGTATGTTGGATTTATTGGAGACTCATCGGTGAAGAAGCCCGAGGATGATTTTGTGACAAAGAAGAATGAAAAAGGTTCAACTGTAATTTACAGATGGAAAAAGAGAACTAACAAAATCCGTTTAAACTTTTTGTATACTTTGTGTTGTCTGAAAGGCACAAAATCCGTTTAAACTTTTTCTCCGTAGTTGGGTGCTAAGTATTCCTGAGTTCCATTGGTCACCTTACTCTTACTGTCTGTTTGCACCATTTGATGAAGTTCTGTACCCCTTCCTTCCTTTCACGGTTTAGATTCAATTTGTTTGAGCCAAAATGGTGCCACTAGATAAATTCTGATCTGTATAGCATGCATTAAGGTTTGATCGTACTTCTGCAATAAGTAAAGAAATGCTCAAAACCAATATCTTTTCTTTTTTGAGATAAAAAAAAAAGTTATATTGGTTTTGAGCATTTCTTTACCTATTGCACAAGTACGATCACAATTTAGTATGACGCTATAAAGGTCTTCATCACCGAGTAAATTGATTCATTAAGTTGTTTGTGAGTAGCTGTGACACGTGTAACAAGGTGTAAACCCTTAATGGATCTTTAAATTGCCACTTGCCCAATCTTACCGGCACTAAATAAGTGGTTGAATAGATAAAGATAATGAAAATAGATTGGAGTTCTGCTGAGGTGAGTTTTGTTTTTTGTAAAACAGTTAGTCTGGTTATCTCATGATGTATGTATACACAAGTTAATTAAGAAGTAACATGAAAAGTGATTTCCATATATATTGTAACTGAATTTGAAAGAAGGAACTTCAACAATCTGTGATGATAGTTTTTTGCCTTTCGGAAGTATACATGTGTAACTTTCAGCCACTTCTGCTTAGTGTTTGCTATACATTTGTGATCAGTTTGCAGGGGTAGAGCTAGTGTGGAGCGTGTGGGTTCGGCCAAATCCAATAGCTTTAGTCCAAATTTTGTATTTTTTTCCTGAAGAAATGTGTTAAATATGTACAAATTATTTAGCTTAGAACCCATTAACTTGAAAGAATTTAGAATTCCGAACCCATAAGCTTTAAAACATTGCTTCACCTTTGTCGGTTAGTGTTTCTAAATTAGGAGAGAGATGAAAACATCAACATACCCAATGTAATACCACAAGTGTGGCGTGGGAGAGTGGCGTGTACGCACACCTTACCCCTACCCTGTGAAGACATAGAAACTGTTTCCGAAAGAACCTTGGCTCAAGTAAATTCTACCACTAGTTTGATGGAGTTGGCACAAATAAGTTAGGCCTGATTAGAGCAGAACTGATTCATACCATCGGCCCCTACTTCCTTTGGGAGTAAGGTGTAGTAATATTGTTGTTTAATAGACTTAGAGACAAGTAAAACAGTTGTTTTAGACAACTAGCATAGACACTGCCCTAGCAGAAACACGGACGGTTCTGATGGCGATTATTGAATGTGGTGATGATAGGTGATATCTAGTTTAGATAATTGGCTAGTGCGTGAAGCTATCCTCATTGGTTTCGATGTTAACATGGTGTTCTCGGTAGTGGATAAAAGCAACTAAAGATTTAATGAACACTCGTATGTAAAAGAACATAAAGTGATATTTAGATGTCAAAATTGAGATTAATGATCCATTACTTGAAATAATGAAGATGTAAGTTAAGATGCAAACAATAGGCAAAGACATGTGAAATAAACATATGAAGAAATAAGAACACATTCAACTTTGTTCCCAAGAAAATGTTTCGCGCTCGTTTGGCCATAGTTTTTGTAGTCGAAACTTGAAAATTTATGTTTTTGGTGTTGTAATTTTTGGAATTTGAAGTTGTGGAAGTCCTAAAAACCCGAAACTAGTCGAGCTAGTTTTGCAATCTTGAAATATTTGAATATCTGATCAAATTTGATGGTCAAACAGATATTTGAAGATTATACAGAAACTACTCCGGGAATCTACGGCCAAGTGCTAGCGCAAGGGATAGGGGAGTGAAAATACTTGCAAAATTCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTTTCAGTTCTTAACCTCCCTGTCTGAAGCAGCCATGGAAACTGATGGTAGTAGAACAACATATATCTATTGCTTACTTCCTCTTTTGAATGACAAACAGGGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATGAAGAGTTCTAGTTCTTGGTTTGGTTTTCTACCATCCATAGTTACATACATAATATATTATATATGAACGTAGCTCGTAGGAATTTAAGTAAATTCGTATTAAGCACCAATTCGCGTCCACATCGTGTCTGTAAT</genome_strand>
        <mrna_strand>ATTCGAATAAAAGTAAAGTAAAAGCTTCCCACTTACAAAAAAATAAGTATAGTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATGAAGAGTTCTAGTTCTTGGTTTGGTTTTCTACCATCCATAGTTACATACCTAATATATTATATATGAACGTAGCTCNGTAGAATTTTAGTAAATTCGTATTAAACACCAATTCGCGTCCACATCGTGTCTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725298" ref_strand="+" ref_description="SGN-E725298 [FC26CG07]">
      <seq>aatcggccgaattccatggggatccgactgacaaaaaaataagtatagtgaatttgagaagttggtttttgcagtgtggtcagtaatggcggtttctattcctgttcttgtgattgttattgcacttcatctcattgcttttgttcttgctgtcggtgctgaacgacgtcgtagcacggcgaaagttgtaccggatgagtatgatgaacgggcgtactgtgtatatggaacggatgcttctacagcctatggattggcggcatttggtttacttctgattagccaaacgttggttaacggcattaccaagtgcttgtgttttggaaaaggaatgatgggtggcagttctactacttgtgccattttcttttttgtcttctcctgggttagttttttaggagcaaaagcatgcttattggcaggatcagcaaagaatgcataccatacaaagtatcgcgcggttttccaagttgaaaacttgtcatgttccaccctccgaaaaggtgtatttgctgctggcgctgccctgacgttattatcaatgattggatccattttctactactggatacactcgaaggctgataccggtggatggcaaaaacaccaaaacgaaggacttggaatggcagcatctaactataccgaatctactgaaagaaaaggctgaatccgtgtttcttctaaaaggtccgttgcatttacaattcgaacaagatgtttcgatgaggaactcaaacatgaagagttctagttcttggtttggttttctaccatccatagttacatacataatatattatatatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44828" stop="39877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44522" g_stop="44373" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="178" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44372" i_stop="43242" i_length="1131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43241" g_stop="43036" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="384" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43035" i_stop="40605" i_length="2431">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40604" g_stop="40177" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="812" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E725298" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44522" e_stop="44373"/>
          <exon e_start="43241" e_stop="43036"/>
          <exon e_start="40604" e_stop="40177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAAAAAATAAGTATAGTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACGGTACCCTTTTGAGCTTATCTTATATTTTCTATGTTATTTTTTTTTTTTTGCTTTTTTTGATTCTGGGTATGGTTAAAGATTGGATTTTTTGGTTGTTTGTTTCTTGGAGATAGGTAAAGATTGTTTTTTTTGTGTGTGTGTTGGTGTGTTTTTGTTGCAGTGTTTGGTTAAAGATTGGGATTGTGTTGGATGTTTGTGGTTTCTTCTGTTGTTAAAGATTGGATTTTTGGGTGTTTTTTGTTTCTGGGTATAGTTAAAGATTGGATCTTCATGGATGTTTTTGGTTTCCTGTGTTGCTAAAGATTGATTTTTTTTTTTTGGGTGTTTGGTGTTTCTGGGTATAGTTAAAGATAGTTTTTTTGGTTCTTAGTTTTTGGATATAGGTAAAAGACTGACTTTTTGTGTTAAATGTGTTATTTTGTCTCTGTTTGTAGTTTAAAGCTTGGACTGTGTTGGATGTTTTTGGTTTCTTGTGTAGCTAAGGATTGATTTGTTTCTTTGGGGTGTTTGGTATTCCTGGATGGTGTTGAATAGTAAAATTGAACTTTTTGGTGTTGTAAAGATTGAGTTTTTGGTTTTATTTGCTAATGAGTCTTCCTTGAGCCAAGGGTCTGTTGGAGACCACCTCTCTACCTTCTAAGGTAGGGGAGTAAAGTCTGCGTATATTCTACTCCTATGTTGCTCGTACTCTACATAAATGTTGCCGCACCATGTTGTATCCTCCAAAAATGCACTACTTTGGAAGGATCTGACACGCACCATTGGCATTTATGAAGAGTTTAAGCAAACATAGCTCTACTCTCCCCATACTTGGATTGCAGAGGTATGTTGTTGTTGTTGCTAATGAGTCTAGTTGAGGATCAAATGTTTTTGGTGTTCTGTTTTCAGGGGTATAGTTAAGATTTGAACTTCTTTTGGGTTTTTGAATATAGTTGGATGATTGGTAAGGATCACATAGCCAACCCCAACTTGCTTGGAATTTGAGGCAAATTAATTGTTGTTGTTGTTTGAGTTGGGATTGAGGCGTAGTACTAGTAGTAATTGTTGTTTCTCTGTAGTTAGTTTCCTTTTTATGGGGTTCTTTTTGGTAGTCAAAGATGGAGTTTTGAATGTTGTTTTGTGTTTGTGAAGGCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTGGTAAGAACATAGTTACTGTTCTCTCTTACTTTAAGTTTATTTACATTCTTTGTCTGGTTGTAGTGCGTTTACCCCCTAGAGTTTACGAAATACTCACATTATTTAAGCAATGAGATTGTTTTTGTTGATTGGCTTATTGTTATTTGTTAGTTTAAGATTGATACTTCTGCACTTATAAACTAAAGAAGGCGTCATTCCTTGTTGAAACTTAATCTTGCCATAGAGTAACCGTATGTTGGATTTATTGGAGACTCATCGGTGAAGAAGCCCGAGGATGATTTTGTGACAAAGAAGAATGAAAAAGGTTCAACTGTAATTTACAGATGGAAAAAGAGAACTAACAAAATCCGTTTAAACTTTTTGTATACTTTGTGTTGTCTGAAAGGCACAAAATCCGTTTAAACTTTTTCTCCGTAGTTGGGTGCTAAGTATTCCTGAGTTCCATTGGTCACCTTACTCTTACTGTCTGTTTGCACCATTTGATGAAGTTCTGTACCCCTTCCTTCCTTTCACGGTTTAGATTCAATTTGTTTGAGCCAAAATGGTGCCACTAGATAAATTCTGATCTGTATAGCATGCATTAAGGTTTGATCGTACTTCTGCAATAAGTAAAGAAATGCTCAAAACCAATATCTTTTCTTTTTTGAGATAAAAAAAAAAGTTATATTGGTTTTGAGCATTTCTTTACCTATTGCACAAGTACGATCACAATTTAGTATGACGCTATAAAGGTCTTCATCACCGAGTAAATTGATTCATTAAGTTGTTTGTGAGTAGCTGTGACACGTGTAACAAGGTGTAAACCCTTAATGGATCTTTAAATTGCCACTTGCCCAATCTTACCGGCACTAAATAAGTGGTTGAATAGATAAAGATAATGAAAATAGATTGGAGTTCTGCTGAGGTGAGTTTTGTTTTTTGTAAAACAGTTAGTCTGGTTATCTCATGATGTATGTATACACAAGTTAATTAAGAAGTAACATGAAAAGTGATTTCCATATATATTGTAACTGAATTTGAAAGAAGGAACTTCAACAATCTGTGATGATAGTTTTTTGCCTTTCGGAAGTATACATGTGTAACTTTCAGCCACTTCTGCTTAGTGTTTGCTATACATTTGTGATCAGTTTGCAGGGGTAGAGCTAGTGTGGAGCGTGTGGGTTCGGCCAAATCCAATAGCTTTAGTCCAAATTTTGTATTTTTTTCCTGAAGAAATGTGTTAAATATGTACAAATTATTTAGCTTAGAACCCATTAACTTGAAAGAATTTAGAATTCCGAACCCATAAGCTTTAAAACATTGCTTCACCTTTGTCGGTTAGTGTTTCTAAATTAGGAGAGAGATGAAAACATCAACATACCCAATGTAATACCACAAGTGTGGCGTGGGAGAGTGGCGTGTACGCACACCTTACCCCTACCCTGTGAAGACATAGAAACTGTTTCCGAAAGAACCTTGGCTCAAGTAAATTCTACCACTAGTTTGATGGAGTTGGCACAAATAAGTTAGGCCTGATTAGAGCAGAACTGATTCATACCATCGGCCCCTACTTCCTTTGGGAGTAAGGTGTAGTAATATTGTTGTTTAATAGACTTAGAGACAAGTAAAACAGTTGTTTTAGACAACTAGCATAGACACTGCCCTAGCAGAAACACGGACGGTTCTGATGGCGATTATTGAATGTGGTGATGATAGGTGATATCTAGTTTAGATAATTGGCTAGTGCGTGAAGCTATCCTCATTGGTTTCGATGTTAACATGGTGTTCTCGGTAGTGGATAAAAGCAACTAAAGATTTAATGAACACTCGTATGTAAAAGAACATAAAGTGATATTTAGATGTCAAAATTGAGATTAATGATCCATTACTTGAAATAATGAAGATGTAAGTTAAGATGCAAACAATAGGCAAAGACATGTGAAATAAACATATGAAGAAATAAGAACACATTCAACTTTGTTCCCAAGAAAATGTTTCGCGCTCGTTTGGCCATAGTTTTTGTAGTCGAAACTTGAAAATTTATGTTTTTGGTGTTGTAATTTTTGGAATTTGAAGTTGTGGAAGTCCTAAAAACCCGAAACTAGTCGAGCTAGTTTTGCAATCTTGAAATATTTGAATATCTGATCAAATTTGATGGTCAAACAGATATTTGAAGATTATACAGAAACTACTCCGGGAATCTACGGCCAAGTGCTAGCGCAAGGGATAGGGGAGTGAAAATACTTGCAAAATTCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTTTCAGTTCTTAACCTCCCTGTCTGAAGCAGCCATGGAAACTGATGGTAGTAGAACAACATATATCTATTGCTTACTTCCTCTTTTGAATGACAAACAGGGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATGAAGAGTTCTAGTTCTTGGTTTGGTTTTCTACCATCCATAGTTACATACATAATATATTATATATGAACG</genome_strand>
        <mrna_strand>TGACAAAAAAATAAGTATAGTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAAAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAGTTTTTTAGGAGCAAAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATGAAGAGTTCTAGTTCTTGGTTTGGTTTTCTACCATCCATAGTTACATACATAATATATTATATATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705219" ref_strand="+" ref_description="SGN-E705219 [FA26CA06]">
      <seq>gtgaatttgagaagttggtttttgcagtgtggacagtaatggcggtttctattcctgttcttgtgattgttattgcacttcatctcattgcttttgttcttgctggcggtgctgaacgacgtcgtaccacggcgaaagttgtaccggatgagtatgatgaacgggcgtactgtgtatatggaacggatgcttctacagcctatggattggcggcatttggtttacttctgattagccaaacgttgggtatcggcattaccaagtgcttgtgttttggaagaggaatgatgggtggcaactctactacttgtgccattttcttttttgtcttctcctgggttatttttttaggagcacaaccatgcttattggcaggatcagcaaagaatgcataccatacaaagtatcgcagcggttttccaagttgaaaacttgtcatgttccaccctccgaaaaggtgtatttgctgctggcgctgccctgacgatattatcaatgattggatccattttctactactggatacactcgaaggctgataccggtggatggcaaaaacaccaaaacgaaggacttggaatggcagcatctaactataccgaatctactgaaagaaaaggctgaatccgtgtttcttctaaaaggtccgttgcatttacaattcgaacaagatgtttcgatgaggaactcagacatgaagagttctagttcttggtttggttttctaccatccatagttacatacataatatattatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44803" stop="39881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44503" g_stop="44373" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44372" i_stop="43242" i_length="1131">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43241" g_stop="43036" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="337" r_length="206" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43035" i_stop="40605" i_length="2431">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40604" g_stop="40181" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="762" r_length="425" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E705219" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44503" e_stop="44373"/>
          <exon e_start="43241" e_stop="43036"/>
          <exon e_start="40604" e_stop="40181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACGGTACCCTTTTGAGCTTATCTTATATTTTCTATGTTATTTTTTTTTTTTTGCTTTTTTTGATTCTGGGTATGGTTAAAGATTGGATTTTTTGGTTGTTTGTTTCTTGGAGATAGGTAAAGATTGTTTTTTTTGTGTGTGTGTTGGTGTGTTTTTGTTGCAGTGTTTGGTTAAAGATTGGGATTGTGTTGGATGTTTGTGGTTTCTTCTGTTGTTAAAGATTGGATTTTTGGGTGTTTTTTGTTTCTGGGTATAGTTAAAGATTGGATCTTCATGGATGTTTTTGGTTTCCTGTGTTGCTAAAGATTGATTTTTTTTTTTTGGGTGTTTGGTGTTTCTGGGTATAGTTAAAGATAGTTTTTTTGGTTCTTAGTTTTTGGATATAGGTAAAAGACTGACTTTTTGTGTTAAATGTGTTATTTTGTCTCTGTTTGTAGTTTAAAGCTTGGACTGTGTTGGATGTTTTTGGTTTCTTGTGTAGCTAAGGATTGATTTGTTTCTTTGGGGTGTTTGGTATTCCTGGATGGTGTTGAATAGTAAAATTGAACTTTTTGGTGTTGTAAAGATTGAGTTTTTGGTTTTATTTGCTAATGAGTCTTCCTTGAGCCAAGGGTCTGTTGGAGACCACCTCTCTACCTTCTAAGGTAGGGGAGTAAAGTCTGCGTATATTCTACTCCTATGTTGCTCGTACTCTACATAAATGTTGCCGCACCATGTTGTATCCTCCAAAAATGCACTACTTTGGAAGGATCTGACACGCACCATTGGCATTTATGAAGAGTTTAAGCAAACATAGCTCTACTCTCCCCATACTTGGATTGCAGAGGTATGTTGTTGTTGTTGCTAATGAGTCTAGTTGAGGATCAAATGTTTTTGGTGTTCTGTTTTCAGGGGTATAGTTAAGATTTGAACTTCTTTTGGGTTTTTGAATATAGTTGGATGATTGGTAAGGATCACATAGCCAACCCCAACTTGCTTGGAATTTGAGGCAAATTAATTGTTGTTGTTGTTTGAGTTGGGATTGAGGCGTAGTACTAGTAGTAATTGTTGTTTCTCTGTAGTTAGTTTCCTTTTTATGGGGTTCTTTTTGGTAGTCAAAGATGGAGTTTTGAATGTTGTTTTGTGTTTGTGAAGGCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTGGTAAGAACATAGTTACTGTTCTCTCTTACTTTAAGTTTATTTACATTCTTTGTCTGGTTGTAGTGCGTTTACCCCCTAGAGTTTACGAAATACTCACATTATTTAAGCAATGAGATTGTTTTTGTTGATTGGCTTATTGTTATTTGTTAGTTTAAGATTGATACTTCTGCACTTATAAACTAAAGAAGGCGTCATTCCTTGTTGAAACTTAATCTTGCCATAGAGTAACCGTATGTTGGATTTATTGGAGACTCATCGGTGAAGAAGCCCGAGGATGATTTTGTGACAAAGAAGAATGAAAAAGGTTCAACTGTAATTTACAGATGGAAAAAGAGAACTAACAAAATCCGTTTAAACTTTTTGTATACTTTGTGTTGTCTGAAAGGCACAAAATCCGTTTAAACTTTTTCTCCGTAGTTGGGTGCTAAGTATTCCTGAGTTCCATTGGTCACCTTACTCTTACTGTCTGTTTGCACCATTTGATGAAGTTCTGTACCCCTTCCTTCCTTTCACGGTTTAGATTCAATTTGTTTGAGCCAAAATGGTGCCACTAGATAAATTCTGATCTGTATAGCATGCATTAAGGTTTGATCGTACTTCTGCAATAAGTAAAGAAATGCTCAAAACCAATATCTTTTCTTTTTTGAGATAAAAAAAAAAGTTATATTGGTTTTGAGCATTTCTTTACCTATTGCACAAGTACGATCACAATTTAGTATGACGCTATAAAGGTCTTCATCACCGAGTAAATTGATTCATTAAGTTGTTTGTGAGTAGCTGTGACACGTGTAACAAGGTGTAAACCCTTAATGGATCTTTAAATTGCCACTTGCCCAATCTTACCGGCACTAAATAAGTGGTTGAATAGATAAAGATAATGAAAATAGATTGGAGTTCTGCTGAGGTGAGTTTTGTTTTTTGTAAAACAGTTAGTCTGGTTATCTCATGATGTATGTATACACAAGTTAATTAAGAAGTAACATGAAAAGTGATTTCCATATATATTGTAACTGAATTTGAAAGAAGGAACTTCAACAATCTGTGATGATAGTTTTTTGCCTTTCGGAAGTATACATGTGTAACTTTCAGCCACTTCTGCTTAGTGTTTGCTATACATTTGTGATCAGTTTGCAGGGGTAGAGCTAGTGTGGAGCGTGTGGGTTCGGCCAAATCCAATAGCTTTAGTCCAAATTTTGTATTTTTTTCCTGAAGAAATGTGTTAAATATGTACAAATTATTTAGCTTAGAACCCATTAACTTGAAAGAATTTAGAATTCCGAACCCATAAGCTTTAAAACATTGCTTCACCTTTGTCGGTTAGTGTTTCTAAATTAGGAGAGAGATGAAAACATCAACATACCCAATGTAATACCACAAGTGTGGCGTGGGAGAGTGGCGTGTACGCACACCTTACCCCTACCCTGTGAAGACATAGAAACTGTTTCCGAAAGAACCTTGGCTCAAGTAAATTCTACCACTAGTTTGATGGAGTTGGCACAAATAAGTTAGGCCTGATTAGAGCAGAACTGATTCATACCATCGGCCCCTACTTCCTTTGGGAGTAAGGTGTAGTAATATTGTTGTTTAATAGACTTAGAGACAAGTAAAACAGTTGTTTTAGACAACTAGCATAGACACTGCCCTAGCAGAAACACGGACGGTTCTGATGGCGATTATTGAATGTGGTGATGATAGGTGATATCTAGTTTAGATAATTGGCTAGTGCGTGAAGCTATCCTCATTGGTTTCGATGTTAACATGGTGTTCTCGGTAGTGGATAAAAGCAACTAAAGATTTAATGAACACTCGTATGTAAAAGAACATAAAGTGATATTTAGATGTCAAAATTGAGATTAATGATCCATTACTTGAAATAATGAAGATGTAAGTTAAGATGCAAACAATAGGCAAAGACATGTGAAATAAACATATGAAGAAATAAGAACACATTCAACTTTGTTCCCAAGAAAATGTTTCGCGCTCGTTTGGCCATAGTTTTTGTAGTCGAAACTTGAAAATTTATGTTTTTGGTGTTGTAATTTTTGGAATTTGAAGTTGTGGAAGTCCTAAAAACCCGAAACTAGTCGAGCTAGTTTTGCAATCTTGAAATATTTGAATATCTGATCAAATTTGATGGTCAAACAGATATTTGAAGATTATACAGAAACTACTCCGGGAATCTACGGCCAAGTGCTAGCGCAAGGGATAGGGGAGTGAAAATACTTGCAAAATTCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTTTCAGTTCTTAACCTCCCTGTCTGAAGCAGCCATGGAAACTGATGGTAGTAGAACAACATATATCTATTGCTTACTTCCTCTTTTGAATGACAAACAGGGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGC-GCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATGAAGAGTTCTAGTTCTTGGTTTGGTTTTCTACCATCCATAGTTACATACATAATATATTATATATG</genome_strand>
        <mrna_strand>GTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGACAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGGCGGTGCTGAACGACGTCGTACCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGGTATCGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAACTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATTTTTTTAGGAGCACAACCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCAGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGATATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAGACATGAAGAGTTCTAGTTCTTGGTTTGGTTTTCTACCATCCATAGTTACATACATAATATATTATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335112" ref_strand="+" ref_description="SGN-E335112 [cTOE-1-O11]">
      <seq>atactcgcaaaatgctcagagatacttccattactttatacacatctcttctctatcacattctttttaccttttggctccatagtctaaggtcgttgtcacgataattactttttcagttcttaacctccctgtctgaagcagccatggaaactgatggtagtagaacaacatatatctattgcttacttcctcttttgaatgacaaacagggttagttttttaggagcagaagcatgcttattggcaggatcagcaaagaatgcataccatacaaagtatcgcgcggttttccaagttgaaaacttgtcatgttccaccctccgaaaaggtgtatttgctgctggcgctgccctgacgttattatcaatgattggatccattttctactactggatacactcgaaggctgataccggtggatggcaaaaacaccaaaacgaaggacttggaatggcagcatctaactataccgaatctactgaaagaaaaggctgaatccgtgtttcttctaaaaggtccgttgcatttacaattcgaacaagatgtttcgatgaggaactcaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="41116" stop="39946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40816" g_stop="40246" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E335112" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40816" e_stop="40246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTTGCAAAATTCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTTTCAGTTCTTAACCTCCCTGTCTGAAGCAGCCATGGAAACTGATGGTAGTAGAACAACATATATCTATTGCTTACTTCCTCTTTTGAATGACAAACAGGGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATG</genome_strand>
        <mrna_strand>ATACTCGCAAAATGCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTTTCAGTTCTTAACCTCCCTGTCTGAAGCAGCCATGGAAACTGATGGTAGTAGAACAACATATATCTATTGCTTACTTCCTCTTTTGAATGACAAACAGGGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698215" ref_strand="+" ref_description="SGN-E698215 [FA05CE01]">
      <seq>gtatagtaaaagcttcccacttacaaaaaaataagtatagtgaatttgagaagttggtttttgcagtgtggtcagtaatggcggtttctattcctgttcttgtgattgttattgcacttcatctcattgcttttgttcttgctgtcggtgctgaacgacgtcgtagcacggcgaaagttgtaccggatgagtatgatgaacgggcgtactgtgtatatggaacggatgcttctacagcctatggattggcggcatttggtttacttctgattagccaaacgttggttaacggcattaccaagtgcttgtgttttggaagaggaatgatgggtggcagttctactacttgtgccattttcttttttgtcttctcctgggttagttttttaggagcagaagcatgcttattggcaggatcagcaaagaatgcataccatacaaagtatcgcgcggttttccaagttgaaaacttgtcatgttccaccctccgaaaaggtgtatttgctgctggcgctgccctgacgttattatcaatgattggatccattttctactactggatacactcgaaggctgataccggtggatggcaaaaacacccaaaacgaaggacttggaatggcagcatctaactataccgaatctactgaaagacaaggctgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44842" stop="40016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44542" g_stop="44373" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44372" i_stop="43242" i_length="1131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43241" g_stop="43036" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="376" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43035" i_stop="40605" i_length="2431">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40604" g_stop="40316" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="666" r_length="290" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E698215" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44542" e_stop="44373"/>
          <exon e_start="43241" e_stop="43036"/>
          <exon e_start="40604" e_stop="40316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGTAAAAGCTTCCCACTTACAAAAAAATAAGTATAGTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACGGTACCCTTTTGAGCTTATCTTATATTTTCTATGTTATTTTTTTTTTTTTGCTTTTTTTGATTCTGGGTATGGTTAAAGATTGGATTTTTTGGTTGTTTGTTTCTTGGAGATAGGTAAAGATTGTTTTTTTTGTGTGTGTGTTGGTGTGTTTTTGTTGCAGTGTTTGGTTAAAGATTGGGATTGTGTTGGATGTTTGTGGTTTCTTCTGTTGTTAAAGATTGGATTTTTGGGTGTTTTTTGTTTCTGGGTATAGTTAAAGATTGGATCTTCATGGATGTTTTTGGTTTCCTGTGTTGCTAAAGATTGATTTTTTTTTTTTGGGTGTTTGGTGTTTCTGGGTATAGTTAAAGATAGTTTTTTTGGTTCTTAGTTTTTGGATATAGGTAAAAGACTGACTTTTTGTGTTAAATGTGTTATTTTGTCTCTGTTTGTAGTTTAAAGCTTGGACTGTGTTGGATGTTTTTGGTTTCTTGTGTAGCTAAGGATTGATTTGTTTCTTTGGGGTGTTTGGTATTCCTGGATGGTGTTGAATAGTAAAATTGAACTTTTTGGTGTTGTAAAGATTGAGTTTTTGGTTTTATTTGCTAATGAGTCTTCCTTGAGCCAAGGGTCTGTTGGAGACCACCTCTCTACCTTCTAAGGTAGGGGAGTAAAGTCTGCGTATATTCTACTCCTATGTTGCTCGTACTCTACATAAATGTTGCCGCACCATGTTGTATCCTCCAAAAATGCACTACTTTGGAAGGATCTGACACGCACCATTGGCATTTATGAAGAGTTTAAGCAAACATAGCTCTACTCTCCCCATACTTGGATTGCAGAGGTATGTTGTTGTTGTTGCTAATGAGTCTAGTTGAGGATCAAATGTTTTTGGTGTTCTGTTTTCAGGGGTATAGTTAAGATTTGAACTTCTTTTGGGTTTTTGAATATAGTTGGATGATTGGTAAGGATCACATAGCCAACCCCAACTTGCTTGGAATTTGAGGCAAATTAATTGTTGTTGTTGTTTGAGTTGGGATTGAGGCGTAGTACTAGTAGTAATTGTTGTTTCTCTGTAGTTAGTTTCCTTTTTATGGGGTTCTTTTTGGTAGTCAAAGATGGAGTTTTGAATGTTGTTTTGTGTTTGTGAAGGCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTGGTAAGAACATAGTTACTGTTCTCTCTTACTTTAAGTTTATTTACATTCTTTGTCTGGTTGTAGTGCGTTTACCCCCTAGAGTTTACGAAATACTCACATTATTTAAGCAATGAGATTGTTTTTGTTGATTGGCTTATTGTTATTTGTTAGTTTAAGATTGATACTTCTGCACTTATAAACTAAAGAAGGCGTCATTCCTTGTTGAAACTTAATCTTGCCATAGAGTAACCGTATGTTGGATTTATTGGAGACTCATCGGTGAAGAAGCCCGAGGATGATTTTGTGACAAAGAAGAATGAAAAAGGTTCAACTGTAATTTACAGATGGAAAAAGAGAACTAACAAAATCCGTTTAAACTTTTTGTATACTTTGTGTTGTCTGAAAGGCACAAAATCCGTTTAAACTTTTTCTCCGTAGTTGGGTGCTAAGTATTCCTGAGTTCCATTGGTCACCTTACTCTTACTGTCTGTTTGCACCATTTGATGAAGTTCTGTACCCCTTCCTTCCTTTCACGGTTTAGATTCAATTTGTTTGAGCCAAAATGGTGCCACTAGATAAATTCTGATCTGTATAGCATGCATTAAGGTTTGATCGTACTTCTGCAATAAGTAAAGAAATGCTCAAAACCAATATCTTTTCTTTTTTGAGATAAAAAAAAAAGTTATATTGGTTTTGAGCATTTCTTTACCTATTGCACAAGTACGATCACAATTTAGTATGACGCTATAAAGGTCTTCATCACCGAGTAAATTGATTCATTAAGTTGTTTGTGAGTAGCTGTGACACGTGTAACAAGGTGTAAACCCTTAATGGATCTTTAAATTGCCACTTGCCCAATCTTACCGGCACTAAATAAGTGGTTGAATAGATAAAGATAATGAAAATAGATTGGAGTTCTGCTGAGGTGAGTTTTGTTTTTTGTAAAACAGTTAGTCTGGTTATCTCATGATGTATGTATACACAAGTTAATTAAGAAGTAACATGAAAAGTGATTTCCATATATATTGTAACTGAATTTGAAAGAAGGAACTTCAACAATCTGTGATGATAGTTTTTTGCCTTTCGGAAGTATACATGTGTAACTTTCAGCCACTTCTGCTTAGTGTTTGCTATACATTTGTGATCAGTTTGCAGGGGTAGAGCTAGTGTGGAGCGTGTGGGTTCGGCCAAATCCAATAGCTTTAGTCCAAATTTTGTATTTTTTTCCTGAAGAAATGTGTTAAATATGTACAAATTATTTAGCTTAGAACCCATTAACTTGAAAGAATTTAGAATTCCGAACCCATAAGCTTTAAAACATTGCTTCACCTTTGTCGGTTAGTGTTTCTAAATTAGGAGAGAGATGAAAACATCAACATACCCAATGTAATACCACAAGTGTGGCGTGGGAGAGTGGCGTGTACGCACACCTTACCCCTACCCTGTGAAGACATAGAAACTGTTTCCGAAAGAACCTTGGCTCAAGTAAATTCTACCACTAGTTTGATGGAGTTGGCACAAATAAGTTAGGCCTGATTAGAGCAGAACTGATTCATACCATCGGCCCCTACTTCCTTTGGGAGTAAGGTGTAGTAATATTGTTGTTTAATAGACTTAGAGACAAGTAAAACAGTTGTTTTAGACAACTAGCATAGACACTGCCCTAGCAGAAACACGGACGGTTCTGATGGCGATTATTGAATGTGGTGATGATAGGTGATATCTAGTTTAGATAATTGGCTAGTGCGTGAAGCTATCCTCATTGGTTTCGATGTTAACATGGTGTTCTCGGTAGTGGATAAAAGCAACTAAAGATTTAATGAACACTCGTATGTAAAAGAACATAAAGTGATATTTAGATGTCAAAATTGAGATTAATGATCCATTACTTGAAATAATGAAGATGTAAGTTAAGATGCAAACAATAGGCAAAGACATGTGAAATAAACATATGAAGAAATAAGAACACATTCAACTTTGTTCCCAAGAAAATGTTTCGCGCTCGTTTGGCCATAGTTTTTGTAGTCGAAACTTGAAAATTTATGTTTTTGGTGTTGTAATTTTTGGAATTTGAAGTTGTGGAAGTCCTAAAAACCCGAAACTAGTCGAGCTAGTTTTGCAATCTTGAAATATTTGAATATCTGATCAAATTTGATGGTCAAACAGATATTTGAAGATTATACAGAAACTACTCCGGGAATCTACGGCCAAGTGCTAGCGCAAGGGATAGGGGAGTGAAAATACTTGCAAAATTCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTTTCAGTTCTTAACCTCCCTGTCTGAAGCAGCCATGGAAACTGATGGTAGTAGAACAACATATATCTATTGCTTACTTCCTCTTTTGAATGACAAACAGGGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACA-CCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATC</genome_strand>
        <mrna_strand>GTATAGTAAAAGCTTCCCACTTACAAAAAAATAAGTATAGTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGACAAGGCTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557973" ref_strand="+" ref_description="SGN-E557973 [16857]">
      <seq>cttgctgtcgtgctgaacgacgtcgtagcacggcaaaagttgtgccggatgagtatgatgaacggacgtactgtgtatatggaacggatgcttctactgcctatggattggcggcatttgggttgcttctgattagccaaacgttggtcaacggcattaccaaatgcttgtgttttggaagaggaatgatgggtggtagttctactacttgtgccattttcttctttgtcttctcctgggttagctttttagggagcagaagcatgcttattagcaggatcagcaaagaatgcataccatacaaaatatcgcgcggctttccaagttgaaagcttgtcatgtgccaccctccgaaaaggtgtatttgctgctggcgctgccctggaccttactatcaatgatcggatccattttctactactggaaacactcaaaggctgatactggtggatggcaaaaacaccaaaagcgaaggacttggaatggcagcatctaactacaccgaatctactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44705" stop="40030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44405" g_stop="44373" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44372" i_stop="43242" i_length="1131">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43241" g_stop="43036" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="238" r_length="206" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43035" i_stop="40605" i_length="2431">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40604" g_stop="40330" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="516" r_length="278" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E557973" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44405" e_stop="44373"/>
          <exon e_start="43241" e_stop="43036"/>
          <exon e_start="40604" e_stop="40330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGTCGGTGCTGAACGACGTCGTAGCACGGTACCCTTTTGAGCTTATCTTATATTTTCTATGTTATTTTTTTTTTTTTGCTTTTTTTGATTCTGGGTATGGTTAAAGATTGGATTTTTTGGTTGTTTGTTTCTTGGAGATAGGTAAAGATTGTTTTTTTTGTGTGTGTGTTGGTGTGTTTTTGTTGCAGTGTTTGGTTAAAGATTGGGATTGTGTTGGATGTTTGTGGTTTCTTCTGTTGTTAAAGATTGGATTTTTGGGTGTTTTTTGTTTCTGGGTATAGTTAAAGATTGGATCTTCATGGATGTTTTTGGTTTCCTGTGTTGCTAAAGATTGATTTTTTTTTTTTGGGTGTTTGGTGTTTCTGGGTATAGTTAAAGATAGTTTTTTTGGTTCTTAGTTTTTGGATATAGGTAAAAGACTGACTTTTTGTGTTAAATGTGTTATTTTGTCTCTGTTTGTAGTTTAAAGCTTGGACTGTGTTGGATGTTTTTGGTTTCTTGTGTAGCTAAGGATTGATTTGTTTCTTTGGGGTGTTTGGTATTCCTGGATGGTGTTGAATAGTAAAATTGAACTTTTTGGTGTTGTAAAGATTGAGTTTTTGGTTTTATTTGCTAATGAGTCTTCCTTGAGCCAAGGGTCTGTTGGAGACCACCTCTCTACCTTCTAAGGTAGGGGAGTAAAGTCTGCGTATATTCTACTCCTATGTTGCTCGTACTCTACATAAATGTTGCCGCACCATGTTGTATCCTCCAAAAATGCACTACTTTGGAAGGATCTGACACGCACCATTGGCATTTATGAAGAGTTTAAGCAAACATAGCTCTACTCTCCCCATACTTGGATTGCAGAGGTATGTTGTTGTTGTTGCTAATGAGTCTAGTTGAGGATCAAATGTTTTTGGTGTTCTGTTTTCAGGGGTATAGTTAAGATTTGAACTTCTTTTGGGTTTTTGAATATAGTTGGATGATTGGTAAGGATCACATAGCCAACCCCAACTTGCTTGGAATTTGAGGCAAATTAATTGTTGTTGTTGTTTGAGTTGGGATTGAGGCGTAGTACTAGTAGTAATTGTTGTTTCTCTGTAGTTAGTTTCCTTTTTATGGGGTTCTTTTTGGTAGTCAAAGATGGAGTTTTGAATGTTGTTTTGTGTTTGTGAAGGCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTGGTAAGAACATAGTTACTGTTCTCTCTTACTTTAAGTTTATTTACATTCTTTGTCTGGTTGTAGTGCGTTTACCCCCTAGAGTTTACGAAATACTCACATTATTTAAGCAATGAGATTGTTTTTGTTGATTGGCTTATTGTTATTTGTTAGTTTAAGATTGATACTTCTGCACTTATAAACTAAAGAAGGCGTCATTCCTTGTTGAAACTTAATCTTGCCATAGAGTAACCGTATGTTGGATTTATTGGAGACTCATCGGTGAAGAAGCCCGAGGATGATTTTGTGACAAAGAAGAATGAAAAAGGTTCAACTGTAATTTACAGATGGAAAAAGAGAACTAACAAAATCCGTTTAAACTTTTTGTATACTTTGTGTTGTCTGAAAGGCACAAAATCCGTTTAAACTTTTTCTCCGTAGTTGGGTGCTAAGTATTCCTGAGTTCCATTGGTCACCTTACTCTTACTGTCTGTTTGCACCATTTGATGAAGTTCTGTACCCCTTCCTTCCTTTCACGGTTTAGATTCAATTTGTTTGAGCCAAAATGGTGCCACTAGATAAATTCTGATCTGTATAGCATGCATTAAGGTTTGATCGTACTTCTGCAATAAGTAAAGAAATGCTCAAAACCAATATCTTTTCTTTTTTGAGATAAAAAAAAAAGTTATATTGGTTTTGAGCATTTCTTTACCTATTGCACAAGTACGATCACAATTTAGTATGACGCTATAAAGGTCTTCATCACCGAGTAAATTGATTCATTAAGTTGTTTGTGAGTAGCTGTGACACGTGTAACAAGGTGTAAACCCTTAATGGATCTTTAAATTGCCACTTGCCCAATCTTACCGGCACTAAATAAGTGGTTGAATAGATAAAGATAATGAAAATAGATTGGAGTTCTGCTGAGGTGAGTTTTGTTTTTTGTAAAACAGTTAGTCTGGTTATCTCATGATGTATGTATACACAAGTTAATTAAGAAGTAACATGAAAAGTGATTTCCATATATATTGTAACTGAATTTGAAAGAAGGAACTTCAACAATCTGTGATGATAGTTTTTTGCCTTTCGGAAGTATACATGTGTAACTTTCAGCCACTTCTGCTTAGTGTTTGCTATACATTTGTGATCAGTTTGCAGGGGTAGAGCTAGTGTGGAGCGTGTGGGTTCGGCCAAATCCAATAGCTTTAGTCCAAATTTTGTATTTTTTTCCTGAAGAAATGTGTTAAATATGTACAAATTATTTAGCTTAGAACCCATTAACTTGAAAGAATTTAGAATTCCGAACCCATAAGCTTTAAAACATTGCTTCACCTTTGTCGGTTAGTGTTTCTAAATTAGGAGAGAGATGAAAACATCAACATACCCAATGTAATACCACAAGTGTGGCGTGGGAGAGTGGCGTGTACGCACACCTTACCCCTACCCTGTGAAGACATAGAAACTGTTTCCGAAAGAACCTTGGCTCAAGTAAATTCTACCACTAGTTTGATGGAGTTGGCACAAATAAGTTAGGCCTGATTAGAGCAGAACTGATTCATACCATCGGCCCCTACTTCCTTTGGGAGTAAGGTGTAGTAATATTGTTGTTTAATAGACTTAGAGACAAGTAAAACAGTTGTTTTAGACAACTAGCATAGACACTGCCCTAGCAGAAACACGGACGGTTCTGATGGCGATTATTGAATGTGGTGATGATAGGTGATATCTAGTTTAGATAATTGGCTAGTGCGTGAAGCTATCCTCATTGGTTTCGATGTTAACATGGTGTTCTCGGTAGTGGATAAAAGCAACTAAAGATTTAATGAACACTCGTATGTAAAAGAACATAAAGTGATATTTAGATGTCAAAATTGAGATTAATGATCCATTACTTGAAATAATGAAGATGTAAGTTAAGATGCAAACAATAGGCAAAGACATGTGAAATAAACATATGAAGAAATAAGAACACATTCAACTTTGTTCCCAAGAAAATGTTTCGCGCTCGTTTGGCCATAGTTTTTGTAGTCGAAACTTGAAAATTTATGTTTTTGGTGTTGTAATTTTTGGAATTTGAAGTTGTGGAAGTCCTAAAAACCCGAAACTAGTCGAGCTAGTTTTGCAATCTTGAAATATTTGAATATCTGATCAAATTTGATGGTCAAACAGATATTTGAAGATTATACAGAAACTACTCCGGGAATCTACGGCCAAGTGCTAGCGCAAGGGATAGGGGAGTGAAAATACTTGCAAAATTCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTTTCAGTTCTTAACCTCCCTGTCTGAAGCAGCCATGGAAACTGATGGTAGTAGAACAACATATATCTATTGCTTACTTCCTCTTTTGAATGACAAACAGGGTTAGTTTTTTA-GGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCT-GACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAA-CGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAA</genome_strand>
        <mrna_strand>CTTGCTGTC-GTGCTGAACGACGTCGTAGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTTGTGCCGGATGAGTATGATGAACGGACGTACTGTGTATATGGAACGGATGCTTCTACTGCCTATGGATTGGCGGCATTTGGGTTGCTTCTGATTAGCCAAACGTTGGTCAACGGCATTACCAAATGCTTGTGTTTTGGAAGAGGAATGATGGGTGGTAGTTCTACTACTTGTGCCATTTTCTTCTTTGTCTTCTCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAGCTTTTTAGGGAGCAGAAGCATGCTTATTAGCAGGATCAGCAAAGAATGCATACCATACAAAATATCGCGCGGCTTTCCAAGTTGAAAGCTTGTCATGTGCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGGACCTTACTATCAATGATCGGATCCATTTTCTACTACTGGAAACACTCAAAGGCTGATACTGGTGGATGGCAAAAACACCAAAAGCGAAGGACTTGGAATGGCAGCATCTAACTACACCGAATCTACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357203" ref_strand="+" ref_description="SGN-E357203 [cLHT-17-B23]">
      <seq>ctgttcttgaaattgttattgcactggatctcattgcttttgttcttgctgccggtgctgaacgacgtcgtagcacggcgaaagttgtaccggatgagtatgatgaacggacgtactgtgtatatggaacggatgcttctacagcctatggatgaggcggcattccggttgcttctgattagccaaacgttggtcaacggcattaccaagtgcttgtgttttggaagaggaatgatgggtggcaattctactacttgtgccattttcttttttgtcttctcctgggttagctttttaggagcagaatcatgcttattggcaggatcagcaaagaatgcataccatacaaagtatcgcgcggttttccaagttgaaaacttgacatgttccaccctccgaaaaggcgtatttgctgctggcgctgccctgacgttattatcaatgatcggatccattttctactactggatacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44749" stop="40113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44449" g_stop="44373" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44372" i_stop="43242" i_length="1131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43241" g_stop="43036" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="284" r_length="207" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43035" i_stop="40605" i_length="2431">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40604" g_stop="40413" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="476" r_length="192" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E357203" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44449" e_stop="44373"/>
          <exon e_start="43241" e_stop="43036"/>
          <exon e_start="40604" e_stop="40413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACGGTACCCTTTTGAGCTTATCTTATATTTTCTATGTTATTTTTTTTTTTTTGCTTTTTTTGATTCTGGGTATGGTTAAAGATTGGATTTTTTGGTTGTTTGTTTCTTGGAGATAGGTAAAGATTGTTTTTTTTGTGTGTGTGTTGGTGTGTTTTTGTTGCAGTGTTTGGTTAAAGATTGGGATTGTGTTGGATGTTTGTGGTTTCTTCTGTTGTTAAAGATTGGATTTTTGGGTGTTTTTTGTTTCTGGGTATAGTTAAAGATTGGATCTTCATGGATGTTTTTGGTTTCCTGTGTTGCTAAAGATTGATTTTTTTTTTTTGGGTGTTTGGTGTTTCTGGGTATAGTTAAAGATAGTTTTTTTGGTTCTTAGTTTTTGGATATAGGTAAAAGACTGACTTTTTGTGTTAAATGTGTTATTTTGTCTCTGTTTGTAGTTTAAAGCTTGGACTGTGTTGGATGTTTTTGGTTTCTTGTGTAGCTAAGGATTGATTTGTTTCTTTGGGGTGTTTGGTATTCCTGGATGGTGTTGAATAGTAAAATTGAACTTTTTGGTGTTGTAAAGATTGAGTTTTTGGTTTTATTTGCTAATGAGTCTTCCTTGAGCCAAGGGTCTGTTGGAGACCACCTCTCTACCTTCTAAGGTAGGGGAGTAAAGTCTGCGTATATTCTACTCCTATGTTGCTCGTACTCTACATAAATGTTGCCGCACCATGTTGTATCCTCCAAAAATGCACTACTTTGGAAGGATCTGACACGCACCATTGGCATTTATGAAGAGTTTAAGCAAACATAGCTCTACTCTCCCCATACTTGGATTGCAGAGGTATGTTGTTGTTGTTGCTAATGAGTCTAGTTGAGGATCAAATGTTTTTGGTGTTCTGTTTTCAGGGGTATAGTTAAGATTTGAACTTCTTTTGGGTTTTTGAATATAGTTGGATGATTGGTAAGGATCACATAGCCAACCCCAACTTGCTTGGAATTTGAGGCAAATTAATTGTTGTTGTTGTTTGAGTTGGGATTGAGGCGTAGTACTAGTAGTAATTGTTGTTTCTCTGTAGTTAGTTTCCTTTTTATGGGGTTCTTTTTGGTAGTCAAAGATGGAGTTTTGAATGTTGTTTTGTGTTTGTGAAGGCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGAT-TGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTGGTAAGAACATAGTTACTGTTCTCTCTTACTTTAAGTTTATTTACATTCTTTGTCTGGTTGTAGTGCGTTTACCCCCTAGAGTTTACGAAATACTCACATTATTTAAGCAATGAGATTGTTTTTGTTGATTGGCTTATTGTTATTTGTTAGTTTAAGATTGATACTTCTGCACTTATAAACTAAAGAAGGCGTCATTCCTTGTTGAAACTTAATCTTGCCATAGAGTAACCGTATGTTGGATTTATTGGAGACTCATCGGTGAAGAAGCCCGAGGATGATTTTGTGACAAAGAAGAATGAAAAAGGTTCAACTGTAATTTACAGATGGAAAAAGAGAACTAACAAAATCCGTTTAAACTTTTTGTATACTTTGTGTTGTCTGAAAGGCACAAAATCCGTTTAAACTTTTTCTCCGTAGTTGGGTGCTAAGTATTCCTGAGTTCCATTGGTCACCTTACTCTTACTGTCTGTTTGCACCATTTGATGAAGTTCTGTACCCCTTCCTTCCTTTCACGGTTTAGATTCAATTTGTTTGAGCCAAAATGGTGCCACTAGATAAATTCTGATCTGTATAGCATGCATTAAGGTTTGATCGTACTTCTGCAATAAGTAAAGAAATGCTCAAAACCAATATCTTTTCTTTTTTGAGATAAAAAAAAAAGTTATATTGGTTTTGAGCATTTCTTTACCTATTGCACAAGTACGATCACAATTTAGTATGACGCTATAAAGGTCTTCATCACCGAGTAAATTGATTCATTAAGTTGTTTGTGAGTAGCTGTGACACGTGTAACAAGGTGTAAACCCTTAATGGATCTTTAAATTGCCACTTGCCCAATCTTACCGGCACTAAATAAGTGGTTGAATAGATAAAGATAATGAAAATAGATTGGAGTTCTGCTGAGGTGAGTTTTGTTTTTTGTAAAACAGTTAGTCTGGTTATCTCATGATGTATGTATACACAAGTTAATTAAGAAGTAACATGAAAAGTGATTTCCATATATATTGTAACTGAATTTGAAAGAAGGAACTTCAACAATCTGTGATGATAGTTTTTTGCCTTTCGGAAGTATACATGTGTAACTTTCAGCCACTTCTGCTTAGTGTTTGCTATACATTTGTGATCAGTTTGCAGGGGTAGAGCTAGTGTGGAGCGTGTGGGTTCGGCCAAATCCAATAGCTTTAGTCCAAATTTTGTATTTTTTTCCTGAAGAAATGTGTTAAATATGTACAAATTATTTAGCTTAGAACCCATTAACTTGAAAGAATTTAGAATTCCGAACCCATAAGCTTTAAAACATTGCTTCACCTTTGTCGGTTAGTGTTTCTAAATTAGGAGAGAGATGAAAACATCAACATACCCAATGTAATACCACAAGTGTGGCGTGGGAGAGTGGCGTGTACGCACACCTTACCCCTACCCTGTGAAGACATAGAAACTGTTTCCGAAAGAACCTTGGCTCAAGTAAATTCTACCACTAGTTTGATGGAGTTGGCACAAATAAGTTAGGCCTGATTAGAGCAGAACTGATTCATACCATCGGCCCCTACTTCCTTTGGGAGTAAGGTGTAGTAATATTGTTGTTTAATAGACTTAGAGACAAGTAAAACAGTTGTTTTAGACAACTAGCATAGACACTGCCCTAGCAGAAACACGGACGGTTCTGATGGCGATTATTGAATGTGGTGATGATAGGTGATATCTAGTTTAGATAATTGGCTAGTGCGTGAAGCTATCCTCATTGGTTTCGATGTTAACATGGTGTTCTCGGTAGTGGATAAAAGCAACTAAAGATTTAATGAACACTCGTATGTAAAAGAACATAAAGTGATATTTAGATGTCAAAATTGAGATTAATGATCCATTACTTGAAATAATGAAGATGTAAGTTAAGATGCAAACAATAGGCAAAGACATGTGAAATAAACATATGAAGAAATAAGAACACATTCAACTTTGTTCCCAAGAAAATGTTTCGCGCTCGTTTGGCCATAGTTTTTGTAGTCGAAACTTGAAAATTTATGTTTTTGGTGTTGTAATTTTTGGAATTTGAAGTTGTGGAAGTCCTAAAAACCCGAAACTAGTCGAGCTAGTTTTGCAATCTTGAAATATTTGAATATCTGATCAAATTTGATGGTCAAACAGATATTTGAAGATTATACAGAAACTACTCCGGGAATCTACGGCCAAGTGCTAGCGCAAGGGATAGGGGAGTGAAAATACTTGCAAAATTCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTTTCAGTTCTTAACCTCCCTGTCTGAAGCAGCCATGGAAACTGATGGTAGTAGAACAACATATATCTATTGCTTACTTCCTCTTTTGAATGACAAACAGGGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTC</genome_strand>
        <mrna_strand>CTGTTCTTGAAATTGTTATTGCACTGGATCTCATTGCTTTTGTTCTTGCTGCCGGTGCTGAACGACGTCGTAGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAAGTTGTACCGGATGAGTATGATGAACGGACGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATGAGGCGGCATTCCGGTTGCTTCTGATTAGCCAAACGTTGGTCAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAATTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAGCTTTTTAGGAGCAGAATCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGACATGTTCCACCCTCCGAAAAGGCGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATCGGATCCATTTTCTACTACTGGATACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319748" ref_strand="+" ref_description="SGN-E319748 [cTOB-12-G22]">
      <seq>agaagttggtttttgcagtgtggtcagtaatggcggtttctattcctgttcttgtgattgttattgcacttcatctcattgcttttgttcttgctgtcggtgctgaacgacgtcgtagcacggcgaaagttgtaccggatgagtatgatgaacgggcgtactgtgtatatggaacggatgcttctacagcctatggattggcggcatttggtttacttctgattagccaaacgttggttaacggcattaccaagtgcttgtgttttggaagaggaatgatgggtggcagttctactacttgtgccattttcttttttgtcttctcctgggttagttttttaggagcagaagcatgcttattggcaggatcagcaaagaatgcataccatacaaagtatcgcgcggttttccaagttgaaaacttgtcatgttccaccctccgaaaaggtgtatttgctgctggcgctgccctgacgttattatcaatgattggatccattttctactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44794" stop="40123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44494" g_stop="44373" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44372" i_stop="43242" i_length="1131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43241" g_stop="43036" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="328" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43035" i_stop="40605" i_length="2431">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40604" g_stop="40423" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="510" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E319748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44494" e_stop="44373"/>
          <exon e_start="43241" e_stop="43036"/>
          <exon e_start="40604" e_stop="40423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACGGTACCCTTTTGAGCTTATCTTATATTTTCTATGTTATTTTTTTTTTTTTGCTTTTTTTGATTCTGGGTATGGTTAAAGATTGGATTTTTTGGTTGTTTGTTTCTTGGAGATAGGTAAAGATTGTTTTTTTTGTGTGTGTGTTGGTGTGTTTTTGTTGCAGTGTTTGGTTAAAGATTGGGATTGTGTTGGATGTTTGTGGTTTCTTCTGTTGTTAAAGATTGGATTTTTGGGTGTTTTTTGTTTCTGGGTATAGTTAAAGATTGGATCTTCATGGATGTTTTTGGTTTCCTGTGTTGCTAAAGATTGATTTTTTTTTTTTGGGTGTTTGGTGTTTCTGGGTATAGTTAAAGATAGTTTTTTTGGTTCTTAGTTTTTGGATATAGGTAAAAGACTGACTTTTTGTGTTAAATGTGTTATTTTGTCTCTGTTTGTAGTTTAAAGCTTGGACTGTGTTGGATGTTTTTGGTTTCTTGTGTAGCTAAGGATTGATTTGTTTCTTTGGGGTGTTTGGTATTCCTGGATGGTGTTGAATAGTAAAATTGAACTTTTTGGTGTTGTAAAGATTGAGTTTTTGGTTTTATTTGCTAATGAGTCTTCCTTGAGCCAAGGGTCTGTTGGAGACCACCTCTCTACCTTCTAAGGTAGGGGAGTAAAGTCTGCGTATATTCTACTCCTATGTTGCTCGTACTCTACATAAATGTTGCCGCACCATGTTGTATCCTCCAAAAATGCACTACTTTGGAAGGATCTGACACGCACCATTGGCATTTATGAAGAGTTTAAGCAAACATAGCTCTACTCTCCCCATACTTGGATTGCAGAGGTATGTTGTTGTTGTTGCTAATGAGTCTAGTTGAGGATCAAATGTTTTTGGTGTTCTGTTTTCAGGGGTATAGTTAAGATTTGAACTTCTTTTGGGTTTTTGAATATAGTTGGATGATTGGTAAGGATCACATAGCCAACCCCAACTTGCTTGGAATTTGAGGCAAATTAATTGTTGTTGTTGTTTGAGTTGGGATTGAGGCGTAGTACTAGTAGTAATTGTTGTTTCTCTGTAGTTAGTTTCCTTTTTATGGGGTTCTTTTTGGTAGTCAAAGATGGAGTTTTGAATGTTGTTTTGTGTTTGTGAAGGCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTGGTAAGAACATAGTTACTGTTCTCTCTTACTTTAAGTTTATTTACATTCTTTGTCTGGTTGTAGTGCGTTTACCCCCTAGAGTTTACGAAATACTCACATTATTTAAGCAATGAGATTGTTTTTGTTGATTGGCTTATTGTTATTTGTTAGTTTAAGATTGATACTTCTGCACTTATAAACTAAAGAAGGCGTCATTCCTTGTTGAAACTTAATCTTGCCATAGAGTAACCGTATGTTGGATTTATTGGAGACTCATCGGTGAAGAAGCCCGAGGATGATTTTGTGACAAAGAAGAATGAAAAAGGTTCAACTGTAATTTACAGATGGAAAAAGAGAACTAACAAAATCCGTTTAAACTTTTTGTATACTTTGTGTTGTCTGAAAGGCACAAAATCCGTTTAAACTTTTTCTCCGTAGTTGGGTGCTAAGTATTCCTGAGTTCCATTGGTCACCTTACTCTTACTGTCTGTTTGCACCATTTGATGAAGTTCTGTACCCCTTCCTTCCTTTCACGGTTTAGATTCAATTTGTTTGAGCCAAAATGGTGCCACTAGATAAATTCTGATCTGTATAGCATGCATTAAGGTTTGATCGTACTTCTGCAATAAGTAAAGAAATGCTCAAAACCAATATCTTTTCTTTTTTGAGATAAAAAAAAAAGTTATATTGGTTTTGAGCATTTCTTTACCTATTGCACAAGTACGATCACAATTTAGTATGACGCTATAAAGGTCTTCATCACCGAGTAAATTGATTCATTAAGTTGTTTGTGAGTAGCTGTGACACGTGTAACAAGGTGTAAACCCTTAATGGATCTTTAAATTGCCACTTGCCCAATCTTACCGGCACTAAATAAGTGGTTGAATAGATAAAGATAATGAAAATAGATTGGAGTTCTGCTGAGGTGAGTTTTGTTTTTTGTAAAACAGTTAGTCTGGTTATCTCATGATGTATGTATACACAAGTTAATTAAGAAGTAACATGAAAAGTGATTTCCATATATATTGTAACTGAATTTGAAAGAAGGAACTTCAACAATCTGTGATGATAGTTTTTTGCCTTTCGGAAGTATACATGTGTAACTTTCAGCCACTTCTGCTTAGTGTTTGCTATACATTTGTGATCAGTTTGCAGGGGTAGAGCTAGTGTGGAGCGTGTGGGTTCGGCCAAATCCAATAGCTTTAGTCCAAATTTTGTATTTTTTTCCTGAAGAAATGTGTTAAATATGTACAAATTATTTAGCTTAGAACCCATTAACTTGAAAGAATTTAGAATTCCGAACCCATAAGCTTTAAAACATTGCTTCACCTTTGTCGGTTAGTGTTTCTAAATTAGGAGAGAGATGAAAACATCAACATACCCAATGTAATACCACAAGTGTGGCGTGGGAGAGTGGCGTGTACGCACACCTTACCCCTACCCTGTGAAGACATAGAAACTGTTTCCGAAAGAACCTTGGCTCAAGTAAATTCTACCACTAGTTTGATGGAGTTGGCACAAATAAGTTAGGCCTGATTAGAGCAGAACTGATTCATACCATCGGCCCCTACTTCCTTTGGGAGTAAGGTGTAGTAATATTGTTGTTTAATAGACTTAGAGACAAGTAAAACAGTTGTTTTAGACAACTAGCATAGACACTGCCCTAGCAGAAACACGGACGGTTCTGATGGCGATTATTGAATGTGGTGATGATAGGTGATATCTAGTTTAGATAATTGGCTAGTGCGTGAAGCTATCCTCATTGGTTTCGATGTTAACATGGTGTTCTCGGTAGTGGATAAAAGCAACTAAAGATTTAATGAACACTCGTATGTAAAAGAACATAAAGTGATATTTAGATGTCAAAATTGAGATTAATGATCCATTACTTGAAATAATGAAGATGTAAGTTAAGATGCAAACAATAGGCAAAGACATGTGAAATAAACATATGAAGAAATAAGAACACATTCAACTTTGTTCCCAAGAAAATGTTTCGCGCTCGTTTGGCCATAGTTTTTGTAGTCGAAACTTGAAAATTTATGTTTTTGGTGTTGTAATTTTTGGAATTTGAAGTTGTGGAAGTCCTAAAAACCCGAAACTAGTCGAGCTAGTTTTGCAATCTTGAAATATTTGAATATCTGATCAAATTTGATGGTCAAACAGATATTTGAAGATTATACAGAAACTACTCCGGGAATCTACGGCCAAGTGCTAGCGCAAGGGATAGGGGAGTGAAAATACTTGCAAAATTCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTTTCAGTTCTTAACCTCCCTGTCTGAAGCAGCCATGGAAACTGATGGTAGTAGAACAACATATATCTATTGCTTACTTCCTCTTTTGAATGACAAACAGGGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACT</genome_strand>
        <mrna_strand>AGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323675" ref_strand="+" ref_description="SGN-E323675 [cTOC-2-D1]">
      <seq>ttcgaataaaagtaaagtaaaagcttcccacttacaaaaaaataagtatagtgaatttgagaagttggtttttgcagtgtggtcagtaatggcggtttctattcctgttcttgtgattgttattgcacttcatctcattgcttttgttcttgctgtcggtgctgaacgacgtcgtagcacggcgaaagttgtaccggatgagtatgatgaacgggcgtactgtgtatatggaacggatgcttctacagcctatggattggcggcatttggtttacttctgattagccaaacgttggttaacggcattaccaagtgcttgtgttttggaagaggaatgatgggtggcagttctactacttgtgccattttcttttttgtcttctcctgatatttgaagattatacagaaactactccgggaatctacggccaagtgctagcgcaagggataggggagtgaaaatacttgcaaaattctcagagatacttccattactttatacacatctcttctctatcacattctttttaccttttggctccatagtctaaggtcgttgtcacgataattactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44853" stop="40402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44553" g_stop="44373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44372" i_stop="43242" i_length="1131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43241" g_stop="43036" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="387" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43035" i_stop="40891" i_length="2145">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40890" g_stop="40702" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="576" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E323675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44553" e_stop="44373"/>
          <exon e_start="43241" e_stop="43036"/>
          <exon e_start="40890" e_stop="40702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAATAAAAGTAAAGTAAAAGCTTCCCACTTACAAAAAAATAAGTATAGTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACGGTACCCTTTTGAGCTTATCTTATATTTTCTATGTTATTTTTTTTTTTTTGCTTTTTTTGATTCTGGGTATGGTTAAAGATTGGATTTTTTGGTTGTTTGTTTCTTGGAGATAGGTAAAGATTGTTTTTTTTGTGTGTGTGTTGGTGTGTTTTTGTTGCAGTGTTTGGTTAAAGATTGGGATTGTGTTGGATGTTTGTGGTTTCTTCTGTTGTTAAAGATTGGATTTTTGGGTGTTTTTTGTTTCTGGGTATAGTTAAAGATTGGATCTTCATGGATGTTTTTGGTTTCCTGTGTTGCTAAAGATTGATTTTTTTTTTTTGGGTGTTTGGTGTTTCTGGGTATAGTTAAAGATAGTTTTTTTGGTTCTTAGTTTTTGGATATAGGTAAAAGACTGACTTTTTGTGTTAAATGTGTTATTTTGTCTCTGTTTGTAGTTTAAAGCTTGGACTGTGTTGGATGTTTTTGGTTTCTTGTGTAGCTAAGGATTGATTTGTTTCTTTGGGGTGTTTGGTATTCCTGGATGGTGTTGAATAGTAAAATTGAACTTTTTGGTGTTGTAAAGATTGAGTTTTTGGTTTTATTTGCTAATGAGTCTTCCTTGAGCCAAGGGTCTGTTGGAGACCACCTCTCTACCTTCTAAGGTAGGGGAGTAAAGTCTGCGTATATTCTACTCCTATGTTGCTCGTACTCTACATAAATGTTGCCGCACCATGTTGTATCCTCCAAAAATGCACTACTTTGGAAGGATCTGACACGCACCATTGGCATTTATGAAGAGTTTAAGCAAACATAGCTCTACTCTCCCCATACTTGGATTGCAGAGGTATGTTGTTGTTGTTGCTAATGAGTCTAGTTGAGGATCAAATGTTTTTGGTGTTCTGTTTTCAGGGGTATAGTTAAGATTTGAACTTCTTTTGGGTTTTTGAATATAGTTGGATGATTGGTAAGGATCACATAGCCAACCCCAACTTGCTTGGAATTTGAGGCAAATTAATTGTTGTTGTTGTTTGAGTTGGGATTGAGGCGTAGTACTAGTAGTAATTGTTGTTTCTCTGTAGTTAGTTTCCTTTTTATGGGGTTCTTTTTGGTAGTCAAAGATGGAGTTTTGAATGTTGTTTTGTGTTTGTGAAGGCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTGGTAAGAACATAGTTACTGTTCTCTCTTACTTTAAGTTTATTTACATTCTTTGTCTGGTTGTAGTGCGTTTACCCCCTAGAGTTTACGAAATACTCACATTATTTAAGCAATGAGATTGTTTTTGTTGATTGGCTTATTGTTATTTGTTAGTTTAAGATTGATACTTCTGCACTTATAAACTAAAGAAGGCGTCATTCCTTGTTGAAACTTAATCTTGCCATAGAGTAACCGTATGTTGGATTTATTGGAGACTCATCGGTGAAGAAGCCCGAGGATGATTTTGTGACAAAGAAGAATGAAAAAGGTTCAACTGTAATTTACAGATGGAAAAAGAGAACTAACAAAATCCGTTTAAACTTTTTGTATACTTTGTGTTGTCTGAAAGGCACAAAATCCGTTTAAACTTTTTCTCCGTAGTTGGGTGCTAAGTATTCCTGAGTTCCATTGGTCACCTTACTCTTACTGTCTGTTTGCACCATTTGATGAAGTTCTGTACCCCTTCCTTCCTTTCACGGTTTAGATTCAATTTGTTTGAGCCAAAATGGTGCCACTAGATAAATTCTGATCTGTATAGCATGCATTAAGGTTTGATCGTACTTCTGCAATAAGTAAAGAAATGCTCAAAACCAATATCTTTTCTTTTTTGAGATAAAAAAAAAAGTTATATTGGTTTTGAGCATTTCTTTACCTATTGCACAAGTACGATCACAATTTAGTATGACGCTATAAAGGTCTTCATCACCGAGTAAATTGATTCATTAAGTTGTTTGTGAGTAGCTGTGACACGTGTAACAAGGTGTAAACCCTTAATGGATCTTTAAATTGCCACTTGCCCAATCTTACCGGCACTAAATAAGTGGTTGAATAGATAAAGATAATGAAAATAGATTGGAGTTCTGCTGAGGTGAGTTTTGTTTTTTGTAAAACAGTTAGTCTGGTTATCTCATGATGTATGTATACACAAGTTAATTAAGAAGTAACATGAAAAGTGATTTCCATATATATTGTAACTGAATTTGAAAGAAGGAACTTCAACAATCTGTGATGATAGTTTTTTGCCTTTCGGAAGTATACATGTGTAACTTTCAGCCACTTCTGCTTAGTGTTTGCTATACATTTGTGATCAGTTTGCAGGGGTAGAGCTAGTGTGGAGCGTGTGGGTTCGGCCAAATCCAATAGCTTTAGTCCAAATTTTGTATTTTTTTCCTGAAGAAATGTGTTAAATATGTACAAATTATTTAGCTTAGAACCCATTAACTTGAAAGAATTTAGAATTCCGAACCCATAAGCTTTAAAACATTGCTTCACCTTTGTCGGTTAGTGTTTCTAAATTAGGAGAGAGATGAAAACATCAACATACCCAATGTAATACCACAAGTGTGGCGTGGGAGAGTGGCGTGTACGCACACCTTACCCCTACCCTGTGAAGACATAGAAACTGTTTCCGAAAGAACCTTGGCTCAAGTAAATTCTACCACTAGTTTGATGGAGTTGGCACAAATAAGTTAGGCCTGATTAGAGCAGAACTGATTCATACCATCGGCCCCTACTTCCTTTGGGAGTAAGGTGTAGTAATATTGTTGTTTAATAGACTTAGAGACAAGTAAAACAGTTGTTTTAGACAACTAGCATAGACACTGCCCTAGCAGAAACACGGACGGTTCTGATGGCGATTATTGAATGTGGTGATGATAGGTGATATCTAGTTTAGATAATTGGCTAGTGCGTGAAGCTATCCTCATTGGTTTCGATGTTAACATGGTGTTCTCGGTAGTGGATAAAAGCAACTAAAGATTTAATGAACACTCGTATGTAAAAGAACATAAAGTGATATTTAGATGTCAAAATTGAGATTAATGATCCATTACTTGAAATAATGAAGATGTAAGTTAAGATGCAAACAATAGGCAAAGACATGTGAAATAAACATATGAAGAAATAAGAACACATTCAACTTTGTTCCCAAGAAAATGTTTCGCGCTCGTTTGGCCATAGTTTTTGTAGTCGAAACTTGAAAATTTATGTTTTTGGTGTTGTAATTTTTGGAATTTGAAGTTGTGGAAGTCCTAAAAACCCGAAACTAGTCGAGCTAGTTTTGCAATCTTGAAATATTTGAATATCTGATCAAATTTGATGGTCAAACAGATATTTGAAGATTATACAGAAACTACTCCGGGAATCTACGGCCAAGTGCTAGCGCAAGGGATAGGGGAGTGAAAATACTTGCAAAATTCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTT</genome_strand>
        <mrna_strand>TTCGAATAAAAGTAAAGTAAAAGCTTCCCACTTACAAAAAAATAAGTATAGTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTGAAGATTATACAGAAACTACTCCGGGAATCTACGGCCAAGTGCTAGCGCAAGGGATAGGGGAGTGAAAATACTTGCAAAATTCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329590" ref_strand="+" ref_description="SGN-E329590 [cTOD-3-G1]">
      <seq>taagaacaaatttgttgatttcgttggtgaatatcacttagatcttatcgtgagttatggcgccgtgcctgttatagctccgcgggtaagtggtgtacacatgttactagaaagttttcaaccaattcatggagttcttttatgtgaaggtgaagacattgatccatcactttatgatagtgatgaattgtcacaagaagaagttgaagaaataaaaaaattacattcaagtgatacaacaattgatagagaaaaagattcaattgaattagcacttgcaaaactatgtcttgagagaaatataccttatttgggaatttgtagaggttcacaagtccttaatgttgcttgtggtggcaccctttatcaagatttggagaaagaattgtctaagcgttatcaaatgttatctcgttcagacactccagagatgtcgtcgttgatgttgcacccttgtcttattggagaatcagacatgaacccgtcggggttattggagtgtttaaacaccatagagaaagaattgtctaaagattcaaactcttcagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="49076" stop="50590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49376" g_stop="49401" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49402" i_stop="49763" i_length="362">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49764" g_stop="50290" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="553" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E329590" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49376" e_stop="49401"/>
          <exon e_start="49764" e_stop="50290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAACAAATTTGTTGATTTCGTTGGTAAGTAGTCGATCGATTTCTCTCTTTGTTTTAATTTTTGTATGTGAAATTAAATTTCGTAGTTAATTTCATATTATTTTTTTTTAATCTAAAGTTGTTTCATGAATTAAAATAATTAAAAAGTGTAGCATAACTGAATCTAATCGAGGTTCGTGTTAGTGGAGGAATTGAATTGGGGATAAAAAAGGGATTTTTATTGTAAGATGTTTTGTGAAATTAAAAAAAAAGTTTATTAATTATGTCTATCTTTGAAAAATTGTTACATTGATTCTTGTGATGGTTTTTACTTTTCTTTTTTAAATTTTCGTGTGATCGACTTATCTGAATTGTTTTAATTTACTTGATTATATGTTCAACGTCAGGTGAATATCACTTAGATCTTATCGTGAGTTATGGCGCCGTGCCTGTTATAGCTCCGCGGGTAAGTGGTGTACACATGTTACTAGAAAGTTTTCAACCAATTCATGGAGTTCTTTTATGTGAAGGTGAAGACATTGATCCATCACTTTATGATAGTGATGAATTGTCACAAGAAGAAGTTGAAGAAATAAAAAAATTACATTCAAGTGATACAACAATTGATAGAGAAAAAGATTCAATTGAATTAGCACTTGCAAAACTATGTCTTGAGAGAAATATACCTTATTTGGGAATTTGTAGAGGTTCACAAGTCCTTAATGTTGCTTGTGGTGGCACCCTTTATCAAGATTTGGAGAAAGAATTGTCTAAGCGTTATCAAATGTTATCTCGTTCAGACACTCCAGAGATGTCGTCGTTGATGTTGCACCCTTGTCTTATTGGAGAATCAGACATGAACCCGTCGGGGTTATTGGAGTGTTTAAACACCATAGAGAAAGAATTGTCTAAAGATTCAAACTCTTCAGAAATG</genome_strand>
        <mrna_strand>TAAGAACAAATTTGTTGATTTCGTTG..........................................................................................................................................................................................................................................................................................................................................................................GTGAATATCACTTAGATCTTATCGTGAGTTATGGCGCCGTGCCTGTTATAGCTCCGCGGGTAAGTGGTGTACACATGTTACTAGAAAGTTTTCAACCAATTCATGGAGTTCTTTTATGTGAAGGTGAAGACATTGATCCATCACTTTATGATAGTGATGAATTGTCACAAGAAGAAGTTGAAGAAATAAAAAAATTACATTCAAGTGATACAACAATTGATAGAGAAAAAGATTCAATTGAATTAGCACTTGCAAAACTATGTCTTGAGAGAAATATACCTTATTTGGGAATTTGTAGAGGTTCACAAGTCCTTAATGTTGCTTGTGGTGGCACCCTTTATCAAGATTTGGAGAAAGAATTGTCTAAGCGTTATCAAATGTTATCTCGTTCAGACACTCCAGAGATGTCGTCGTTGATGTTGCACCCTTGTCTTATTGGAGAATCAGACATGAACCCGTCGGGGTTATTGGAGTGTTTAAACACCATAGAGAAAGAATTGTCTAAAGATTCAAACTCTTCAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212100" ref_strand="+" ref_description="SGN-E212100 [cLEC-75-O9]">
      <seq>caagaagaagttgaagaaataaaaaaattacattcaagtgatacaacaattgatagagaaaaagattcaattgaattagcacttgcaaaactatgtcttgagagaaatataccttatttgggaatttgtagaggttcacaagtccttaatgttgcttgtggtggcaccctttatcaagatttggagaaagaattgtctaagcgttatcaaatgttatctcgttcagacactccagagatgtcgtcgttgatgttgcacccttgtcttattggagaatcagacatgaacccgtcggggttattggagtgtttaaacaccatagagaaagaattgtctaaagattcaaactcttcagaaatgtcaacaatattgaagtcatgtccgagtgatacagagaaagaatcgtctgaaaattacaaagacctattctgttcagactcttcagaaatgtcagacatgcaaccatcgacaatattgaagtcatgtccgagtgacatagagagagaattgcccaacaactgctctttagaaatgttgtcacgttcgtcatcgttgaagagtgaaagtcagagtcagagtcggagcgatataggcaaaaagtatgaaaaagttgtacatatgaactatgaaaactatgatggacatagacatgtgggtgaaaantagtgaaatacaccattacacaaatggtttaaagagtcattagaagaataatatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="49631" stop="50953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49931" g_stop="50653" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E212100" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49931" e_stop="50653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGAAGTTGAAGAAATAAAAAAATTACATTCAAGTGATACAACAATTGATAGAGAAAAAGATTCAATTGAATTAGCACTTGCAAAACTATGTCTTGAGAGAAATATACCTTATTTGGGAATTTGTAGAGGTTCACAAGTCCTTAATGTTGCTTGTGGTGGCACCCTTTATCAAGATTTGGAGAAAGAATTGTCTAAGCGTTATCAAATGTTATCTCGTTCAGACACTCCAGAGATGTCGTCGTTGATGTTGCACCCTTGTCTTATTGGAGAATCAGACATGAACCCGTCGGGGTTATTGGAGTGTTTAAACACCATAGAGAAAGAATTGTCTAAAGATTCAAACTCTTCAGAAATGTCAACAATATTGAAGTCATGTCCGAGTGATACAGAGAAAGAATCGTCTGAAAATTACAAAGACCTATTCTGTTCAGACTCTTCAGAAATGTCAGACATGCAACCATCGACAATATTGAAGTCATGTCCGAGTGACATAGAGAGAGAATTGCCCAACAACTGCTCTTTAGAAATGTTGTCACGTTCGTCATCGTTGAAGAGTGAAAGTCAGAGTCAGAGTCGGAGCGATATAGGCAAAAAGTATGAAAAAGTTGTACATATGAACTATGAAAACTATGATGGACATAGACATGT-GGTGAAAATAGTTGAAAATACACCATTACACAAATGGTTTAAAGAGTCATTAGAAGATAATAATGATGAT</genome_strand>
        <mrna_strand>CAAGAAGAAGTTGAAGAAATAAAAAAATTACATTCAAGTGATACAACAATTGATAGAGAAAAAGATTCAATTGAATTAGCACTTGCAAAACTATGTCTTGAGAGAAATATACCTTATTTGGGAATTTGTAGAGGTTCACAAGTCCTTAATGTTGCTTGTGGTGGCACCCTTTATCAAGATTTGGAGAAAGAATTGTCTAAGCGTTATCAAATGTTATCTCGTTCAGACACTCCAGAGATGTCGTCGTTGATGTTGCACCCTTGTCTTATTGGAGAATCAGACATGAACCCGTCGGGGTTATTGGAGTGTTTAAACACCATAGAGAAAGAATTGTCTAAAGATTCAAACTCTTCAGAAATGTCAACAATATTGAAGTCATGTCCGAGTGATACAGAGAAAGAATCGTCTGAAAATTACAAAGACCTATTCTGTTCAGACTCTTCAGAAATGTCAGACATGCAACCATCGACAATATTGAAGTCATGTCCGAGTGACATAGAGAGAGAATTGCCCAACAACTGCTCTTTAGAAATGTTGTCACGTTCGTCATCGTTGAAGAGTGAAAGTCAGAGTCAGAGTCGGAGCGATATAGGCAAAAAGTATGAAAAAGTTGTACATATGAACTATGAAAACTATGATGGACATAGACATGTGGGTGAAAANTAGTG-AAATACACCATTACACAAATGGTTTAAAGAGTCATTAGAAGAATAATATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541232" ref_strand="+" ref_description="SGN-E541232 [TUS-61-O18](-)">
      <seq>gaatattgatgggaaaggagtggaagttagtaacgaagtaacagaagttcgagggaagttacaaataaaagatctgtaaaacagatgagctgatgagtaacaatgcttatgcaggtgatcgaacgactgaaagaaaaaactaaaagtatagtattaagatagcaccataatgctcctcattttctgctttcatagtagagagagctggctgtttttactgccttgaatttgttggtgtgttaatttatactagcaatattttgatagagctactatatatggtggtgaaatgtagcttccccatgtcatgtacattacttttttatttgactttatttagtaataatagacttatttaggtaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="53959" stop="52998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53659" g_stop="53299" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="372"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E541232" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53659" e_stop="53299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTGATGGGAAAGGAGTGGAAGTTAGTAACGAAGTAACAGAAGTTCGAGGGAAGTTACAAATAAAAGATCTGTAAAACAGATGAGCTGATGAGTAACAATGCTTATGCAGGTGATCGAACGACTGAAAGAAAAAACTAAAAGTATAGTATTAAGATAGCACCATAATGCTCCTCATTTTCTGCTTTCATAGTAGAGAGAGCTGGCTGTTTTTACTGCCTTGAATTTGTTGGTGTGTTAATTTATACTAGCAATATTTTGATAGAGCTACTATATATGGTGGTGAAATGTAGCTTCCCCATGTCATGTACATTACTTTTTTATTTGACTTTATTTAGTAATAATAGACTTATTTAGGT</genome_strand>
        <mrna_strand>GAATATTGATGGGAAAGGAGTGGAAGTTAGTAACGAAGTAACAGAAGTTCGAGGGAAGTTACAAATAAAAGATCTGTAAAACAGATGAGCTGATGAGTAACAATGCTTATGCAGGTGATCGAACGACTGAAAGAAAAAACTAAAAGTATAGTATTAAGATAGCACCATAATGCTCCTCATTTTCTGCTTTCATAGTAGAGAGAGCTGGCTGTTTTTACTGCCTTGAATTTGTTGGTGTGTTAATTTATACTAGCAATATTTTGATAGAGCTACTATATATGGTGGTGAAATGTAGCTTCCCCATGTCATGTACATTACTTTTTTATTTGACTTTATTTAGTAATAATAGACTTATTTAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541235" ref_strand="+" ref_description="SGN-E541235 [TUS-61-O18]">
      <seq>gaatattgatgggaaaggagtggaagttagtaacgaagtaacagaagttcgagggaagttacaaataaaagatctgtaaaacagatgagctgatgagtaacaatgcttatgcaggtgatcgaacgactgaaagaaaaaactaaaagtatagtattaagatagcaccataatgctcctcattttctgctttcatagtagagagagctggctgtttttactgccttgaatttgttggtgtgttaatttatactagcaatattttgatagagctactatatatggtggtgaaatgtagcttccccatgtcatgtacattacttttttatttgactttatttagtaataatagacttatttaggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="53959" stop="52998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53659" g_stop="53299" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="372"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E541235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53659" e_stop="53299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTGATGGGAAAGGAGTGGAAGTTAGTAACGAAGTAACAGAAGTTCGAGGGAAGTTACAAATAAAAGATCTGTAAAACAGATGAGCTGATGAGTAACAATGCTTATGCAGGTGATCGAACGACTGAAAGAAAAAACTAAAAGTATAGTATTAAGATAGCACCATAATGCTCCTCATTTTCTGCTTTCATAGTAGAGAGAGCTGGCTGTTTTTACTGCCTTGAATTTGTTGGTGTGTTAATTTATACTAGCAATATTTTGATAGAGCTACTATATATGGTGGTGAAATGTAGCTTCCCCATGTCATGTACATTACTTTTTTATTTGACTTTATTTAGTAATAATAGACTTATTTAGGT</genome_strand>
        <mrna_strand>GAATATTGATGGGAAAGGAGTGGAAGTTAGTAACGAAGTAACAGAAGTTCGAGGGAAGTTACAAATAAAAGATCTGTAAAACAGATGAGCTGATGAGTAACAATGCTTATGCAGGTGATCGAACGACTGAAAGAAAAAACTAAAAGTATAGTATTAAGATAGCACCATAATGCTCCTCATTTTCTGCTTTCATAGTAGAGAGAGCTGGCTGTTTTTACTGCCTTGAATTTGTTGGTGTGTTAATTTATACTAGCAATATTTTGATAGAGCTACTATATATGGTGGTGAAATGTAGCTTCCCCATGTCATGTACATTACTTTTTTATTTGACTTTATTTAGTAATAATAGACTTATTTAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296066" ref_strand="+" ref_description="SGN-E296066 [cLET-24-C19]">
      <seq>aatattgatgggaaaggagtggaagttagtaacgaagtaacagaagttggagggaagttacaaataaaagatctgtaaaacagatgagctgatgagtaacaatgcttatgcaggtgatcgaacgactgaaagaaaaaactaaaagtatagtattaagatagcaccataatgctcctcattttctgctttcatagtagagagagctggctgtttttactgccttgaatttgttggtgtgttaatttatactagcaatattttgatagagctactatatatggtggtgaaatgtagcttccccatgtcatgtacattacttttttatttgactttatttagtaataatagacttatttaggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="53958" stop="52998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53658" g_stop="53299" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="371"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E296066" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53658" e_stop="53299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTGATGGGAAAGGAGTGGAAGTTAGTAACGAAGTAACAGAAGTTCGAGGGAAGTTACAAATAAAAGATCTGTAAAACAGATGAGCTGATGAGTAACAATGCTTATGCAGGTGATCGAACGACTGAAAGAAAAAACTAAAAGTATAGTATTAAGATAGCACCATAATGCTCCTCATTTTCTGCTTTCATAGTAGAGAGAGCTGGCTGTTTTTACTGCCTTGAATTTGTTGGTGTGTTAATTTATACTAGCAATATTTTGATAGAGCTACTATATATGGTGGTGAAATGTAGCTTCCCCATGTCATGTACATTACTTTTTTATTTGACTTTATTTAGTAATAATAGACTTATTTAGGT</genome_strand>
        <mrna_strand>AATATTGATGGGAAAGGAGTGGAAGTTAGTAACGAAGTAACAGAAGTTGGAGGGAAGTTACAAATAAAAGATCTGTAAAACAGATGAGCTGATGAGTAACAATGCTTATGCAGGTGATCGAACGACTGAAAGAAAAAACTAAAAGTATAGTATTAAGATAGCACCATAATGCTCCTCATTTTCTGCTTTCATAGTAGAGAGAGCTGGCTGTTTTTACTGCCTTGAATTTGTTGGTGTGTTAATTTATACTAGCAATATTTTGATAGAGCTACTATATATGGTGGTGAAATGTAGCTTCCCCATGTCATGTACATTACTTTTTTATTTGACTTTATTTAGTAATAATAGACTTATTTAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419518" ref_strand="-" ref_description="SGN-E419518 [STM-29-B24]">
      <seq>gtattttgcacacgatcagccttatggtcgtgaacctctggcagacaagatatctgctcttgctcaacgtttccccgaattaaaaacaattagaagttgtgatctccttcattacagttggatttctgtagcctggtatccaatttaccggatacctacgggacctactttaaaagctctggatgcttgttttctgacatttcattctcttcatacacccatgccaggaaatcaaaatggtcataccgcggttgttgcatgtccaactgatacggatgtggcccctaagattccactacctgcttttggccttgcttcatacaagtttaaagcgtcactttggactccaaatggcggacctggaagacatttaatgagctcgctcttacaagctgctgataaccggctaacgcttcttcaggtcaatcaccctgatttcagtttcttctgccagaggtgaaaatgagatactctcctctgtttgtggttagagaaccactctgtggttgatacagctgttgattttccaaggaaaaatgggttaagacttaaggattcactctaacctttagttacaatgctgttatctatactacgaggcaaaacaaaattaaaaaaaaagaaaaaaagaagaaaaaaaaaaaaaaaaaactcgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="55793" stop="53387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55704" g_stop="55656" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55655" i_stop="55492" i_length="164">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55491" g_stop="55406" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="135" r_length="86" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55405" i_stop="55320" i_length="86">
            <donor d_prob="0.624" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55319" g_stop="55228" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="227" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55227" i_stop="54118" i_length="1110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54117" g_stop="53686" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="659" r_length="432" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E419518" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419518" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55704" e_stop="55656"/>
          <exon e_start="55491" e_stop="55406"/>
          <exon e_start="55319" e_stop="55228"/>
          <exon e_start="54117" e_stop="53686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTTGCGCATGATCAGCCCTATGGTCGTGAACCTTTGGCAGACAAGGTTGGTTTTTTTTTGTTTGATAAGTAAGATTGTTGGTCTTTTCCTCCCTCTCCCTCAAAGTATAGTTATCTTTTGTTTATTTCATTGATAGGGAGTAATGGATAAATTACTTTTCTTGTCTTTGTGTTTTATCTCATATTCTCATTATGTTTTGTGTTCTGTAGATATCTGATCTTGCTCAACGTTTCCCGGAATTAAAAACAATGAGAAGTTGTGATCTCCTTCCTTCCAGTTGGATATCTGTAGCCTGGTATTTTTGTTTTTCTTGCCCATTTCATATCAGGATGTATACTTGTTTTTCCCCTGAATTTTAATGTTCTGATGTCTCTCTTGCAGGTATCCAATTTACCGGATACCTACGGGACCTACTTTAAAAGCTCTGGATGCTTGTTTTCTGACATTTCATTCTCTTCATACACCCATGCCAGGTATTTGACATTTTCCACCCTAAATTGCTTTTGTTTTTTCGGTGAATATTACAACTGTGGCTTCTTCTGTTCCCTTTCGCAATTTTCCATATTTATTCTTTTTATAATGTGTTGTGGTGTTTTTTGGTATTTGCATACGTATGTTCATCTGTACTAGTATGTTGGTATTCATATGTTTCCTTAATCTATTTGATAAAAAGAAGAAGAGGAGAACTAATTGCTGTCAAACTAAGAATTTTTGACTGCATCAATTTCATGGATTCATTGCAATCAATAATTTCAACTCATCTCACATGGGAATAAGGATTTATAAGAAGCCTCCAAAATAGTTCTATAAGAGAAACATAAATATAACCTATGTGGAAGTTGTGTAGCGAGGTTTTTATCTTCTTTTTTTCTTTTGACAGAATCCGTCTGGCTAACTGTTAGGACCAATCACAGCCTTTGAAACTCGGGATAATATGCCTTCTCCTCTACCCTTCTCCACTTAAATACCAGGCATAGTTTGCATGATGCAGGGTTTGAACTTCTGGCCTAACACAAGACCCTCAACCTTTGCCACTTGAACCGAGTCCCAAGGCTTGTCTCAGTCCTTCTTAATAGTAATAAGAAGCTAACTTATTCTTTTCACTTTGTTATTTTTCTTGAAAGATATAATCTGAATGGAATAGAACGGCAGAGTTTTTGGAGTTCGGTATCATCAGTAGCGAAGTTGGCACAAGAGTTAGTTTGTGTCATGCAGTGTTGTTTGGTTTGAATGACTTATGAAAGCCTTAAATCTGATATCCTCCAAAATTACAATGTTGTCTTCTGTCGAGTTTAGCATGTTCTCCTGGCTATAACTGGTGCATTAATCTGGTAAAAAAGAGTTTGTCCCGAAAAAGATGTCCACCCAAAGTTCATCACCTTTGCTAGCATGTTGGAACTTGGAAGCCAATATCTCCTTGAGTTGTGGTTTTGTTATTCATGTATGTCCCGGTGAACAAATCTGGTGAAGTATGCGTTAAGAGTGTGTATTATTACAATAGCCTAATGTGGGTTGCTAGTAGCATTTAACTAAATTGTTCTATTGCAAATGCCTCGTTGAAATTTTTCATGGACTTTCTGCAGGAAATCAAAGTGGTCATACCGCTGTTGTTGCATGTCCAACTGATACGGATGCTGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTAAAGCGTCACTTTGGACTCCAAATGGCGGATCTGGAAGACAGTTAATGAGCTCGCTCTTACAAGCTGCTGATAACTGGCTAACACTTCTTCAGGTCAATCATCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAACGATATACTCTCCTCTGTTTGTGGCGAGAAAACCACTCTCTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTGAAGATTCGCTCTAACCTTTAGTTACAATGCTGTTATCTATACTAAGAGACAAAACAAAATTCAAAAAAAAAAAAAAAACGAAAAAAAAAAAAAACAGAAACCGTAAAT</genome_strand>
        <mrna_strand>GTATTTTGCACACGATCAGCCTTATGGTCGTGAACCTCTGGCAGACAAG....................................................................................................................................................................ATATCTGCTCTTGCTCAACGTTTCCCCGAATTAAAAACAATTAGAAGTTGTGATCTCCTTCATTACAGTTGGATTTCTGTAGCCTG......................................................................................GTATCCAATTTACCGGATACCTACGGGACCTACTTTAAAAGCTCTGGATGCTTGTTTTCTGACATTTCATTCTCTTCATACACCCATGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCAAAATGGTCATACCGCGGTTGTTGCATGTCCAACTGATACGGATGTGGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTAAAGCGTCACTTTGGACTCCAAATGGCGGACCTGGAAGACATTTAATGAGCTCGCTCTTACAAGCTGCTGATAACCGGCTAACGCTTCTTCAGGTCAATCACCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAATGAGATACTCTCCTCTGTTTGTGGTTAGAGAACCACTCTGTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTAAGGATTCACTCTAACCTTTAGTTACAATGCTGTTATCTATACTACGAGGCAAAACAAAATTAAAAAAAAAGAAAAAAAGAAGAAAAAAAAAAAAAAAAAACTCGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226905" ref_strand="+" ref_description="SGN-E226905 [cLEL-26-F19](-)">
      <seq>gcctggtatccaatttaccggatacctacgggacctactttaaaagctctggatgcttgttttctgacatttcattctcttcatacacccatgccaggaaatcaaagtggtcataccgctgttgttgcatgtccaactgatacggatgctgcccctaagattccactacctgcttttggccttgcttcatacaagtttaaagcgtcactttggactccaaatggcggatctggaagacagttaatgagctcgctcttacaagctgctgataactggctaacacttcttcaggtcaatcatcctgatttcagtttcttctgccagaggtgaaaacgatatactctcctctgtttgtggcgagaaaaccactctctggttgatacagctgttgattttccaaggaaaaatgggttaagacttgaagattcgctctaacctttagttacaatgctgttatctatactaagagacaaaacaaaattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="55622" stop="53416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55410" g_stop="55406" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55405" i_stop="55320" i_length="86">
            <donor d_prob="0.624" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55319" g_stop="55228" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="97" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55227" i_stop="54118" i_length="1110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54117" g_stop="53715" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="500" r_length="403" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E226905" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55410" e_stop="55406"/>
          <exon e_start="55319" e_stop="55228"/>
          <exon e_start="54117" e_stop="53715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGGTATTTTTGTTTTTCTTGCCCATTTCATATCAGGATGTATACTTGTTTTTCCCCTGAATTTTAATGTTCTGATGTCTCTCTTGCAGGTATCCAATTTACCGGATACCTACGGGACCTACTTTAAAAGCTCTGGATGCTTGTTTTCTGACATTTCATTCTCTTCATACACCCATGCCAGGTATTTGACATTTTCCACCCTAAATTGCTTTTGTTTTTTCGGTGAATATTACAACTGTGGCTTCTTCTGTTCCCTTTCGCAATTTTCCATATTTATTCTTTTTATAATGTGTTGTGGTGTTTTTTGGTATTTGCATACGTATGTTCATCTGTACTAGTATGTTGGTATTCATATGTTTCCTTAATCTATTTGATAAAAAGAAGAAGAGGAGAACTAATTGCTGTCAAACTAAGAATTTTTGACTGCATCAATTTCATGGATTCATTGCAATCAATAATTTCAACTCATCTCACATGGGAATAAGGATTTATAAGAAGCCTCCAAAATAGTTCTATAAGAGAAACATAAATATAACCTATGTGGAAGTTGTGTAGCGAGGTTTTTATCTTCTTTTTTTCTTTTGACAGAATCCGTCTGGCTAACTGTTAGGACCAATCACAGCCTTTGAAACTCGGGATAATATGCCTTCTCCTCTACCCTTCTCCACTTAAATACCAGGCATAGTTTGCATGATGCAGGGTTTGAACTTCTGGCCTAACACAAGACCCTCAACCTTTGCCACTTGAACCGAGTCCCAAGGCTTGTCTCAGTCCTTCTTAATAGTAATAAGAAGCTAACTTATTCTTTTCACTTTGTTATTTTTCTTGAAAGATATAATCTGAATGGAATAGAACGGCAGAGTTTTTGGAGTTCGGTATCATCAGTAGCGAAGTTGGCACAAGAGTTAGTTTGTGTCATGCAGTGTTGTTTGGTTTGAATGACTTATGAAAGCCTTAAATCTGATATCCTCCAAAATTACAATGTTGTCTTCTGTCGAGTTTAGCATGTTCTCCTGGCTATAACTGGTGCATTAATCTGGTAAAAAAGAGTTTGTCCCGAAAAAGATGTCCACCCAAAGTTCATCACCTTTGCTAGCATGTTGGAACTTGGAAGCCAATATCTCCTTGAGTTGTGGTTTTGTTATTCATGTATGTCCCGGTGAACAAATCTGGTGAAGTATGCGTTAAGAGTGTGTATTATTACAATAGCCTAATGTGGGTTGCTAGTAGCATTTAACTAAATTGTTCTATTGCAAATGCCTCGTTGAAATTTTTCATGGACTTTCTGCAGGAAATCAAAGTGGTCATACCGCTGTTGTTGCATGTCCAACTGATACGGATGCTGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTAAAGCGTCACTTTGGACTCCAAATGGCGGATCTGGAAGACAGTTAATGAGCTCGCTCTTACAAGCTGCTGATAACTGGCTAACACTTCTTCAGGTCAATCATCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAACGATATACTCTCCTCTGTTTGTGGCGAGAAAACCACTCTCTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTGAAGATTCGCTCTAACCTTTAGTTACAATGCTGTTATCTATACTAAGAGACAAAACAAAATTCAAAAAAAAAAAAAAAAC</genome_strand>
        <mrna_strand>GCCTG......................................................................................GTATCCAATTTACCGGATACCTACGGGACCTACTTTAAAAGCTCTGGATGCTTGTTTTCTGACATTTCATTCTCTTCATACACCCATGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCAAAGTGGTCATACCGCTGTTGTTGCATGTCCAACTGATACGGATGCTGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTAAAGCGTCACTTTGGACTCCAAATGGCGGATCTGGAAGACAGTTAATGAGCTCGCTCTTACAAGCTGCTGATAACTGGCTAACACTTCTTCAGGTCAATCATCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAACGATATACTCTCCTCTGTTTGTGGCGAGAAAACCACTCTCTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTGAAGATTCGCTCTAACCTTTAGTTACAATGCTGTTATCTATACTAAGAGACAAAACAAAATTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226510" ref_strand="+" ref_description="SGN-E226510 [cLEL-26-F19](-)">
      <seq>aaaagctctggatgcttgttttctgacatttcattctcttcatacacccatgccaggaaatcaaagtggtcataccgctgttgttgcatgtccaactgatacggatgctgcccctaagattccactacctgcttttggccttgcttcatacaagtttaaagcgtcactttggactccaaatggcggatctggaagacagttaatgagctcgctcttacaagctgctgataactggctaacacttcttcaggtcaatcatcctgatttcagtttcttctgccagaggtgaaaacgatatactctcctctgtttgtggcgagaaaaccactctctggttgatacagctgttgattttccaaggaaaaatgggttaagacttgaagattcgctctaacctttagttacaatgctgttatctatactaagagacaaaacaaaattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="55583" stop="53416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55283" g_stop="55228" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55227" i_stop="54118" i_length="1110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54117" g_stop="53715" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="459" r_length="403" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E226510" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55283" e_stop="55228"/>
          <exon e_start="54117" e_stop="53715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTCTGGATGCTTGTTTTCTGACATTTCATTCTCTTCATACACCCATGCCAGGTATTTGACATTTTCCACCCTAAATTGCTTTTGTTTTTTCGGTGAATATTACAACTGTGGCTTCTTCTGTTCCCTTTCGCAATTTTCCATATTTATTCTTTTTATAATGTGTTGTGGTGTTTTTTGGTATTTGCATACGTATGTTCATCTGTACTAGTATGTTGGTATTCATATGTTTCCTTAATCTATTTGATAAAAAGAAGAAGAGGAGAACTAATTGCTGTCAAACTAAGAATTTTTGACTGCATCAATTTCATGGATTCATTGCAATCAATAATTTCAACTCATCTCACATGGGAATAAGGATTTATAAGAAGCCTCCAAAATAGTTCTATAAGAGAAACATAAATATAACCTATGTGGAAGTTGTGTAGCGAGGTTTTTATCTTCTTTTTTTCTTTTGACAGAATCCGTCTGGCTAACTGTTAGGACCAATCACAGCCTTTGAAACTCGGGATAATATGCCTTCTCCTCTACCCTTCTCCACTTAAATACCAGGCATAGTTTGCATGATGCAGGGTTTGAACTTCTGGCCTAACACAAGACCCTCAACCTTTGCCACTTGAACCGAGTCCCAAGGCTTGTCTCAGTCCTTCTTAATAGTAATAAGAAGCTAACTTATTCTTTTCACTTTGTTATTTTTCTTGAAAGATATAATCTGAATGGAATAGAACGGCAGAGTTTTTGGAGTTCGGTATCATCAGTAGCGAAGTTGGCACAAGAGTTAGTTTGTGTCATGCAGTGTTGTTTGGTTTGAATGACTTATGAAAGCCTTAAATCTGATATCCTCCAAAATTACAATGTTGTCTTCTGTCGAGTTTAGCATGTTCTCCTGGCTATAACTGGTGCATTAATCTGGTAAAAAAGAGTTTGTCCCGAAAAAGATGTCCACCCAAAGTTCATCACCTTTGCTAGCATGTTGGAACTTGGAAGCCAATATCTCCTTGAGTTGTGGTTTTGTTATTCATGTATGTCCCGGTGAACAAATCTGGTGAAGTATGCGTTAAGAGTGTGTATTATTACAATAGCCTAATGTGGGTTGCTAGTAGCATTTAACTAAATTGTTCTATTGCAAATGCCTCGTTGAAATTTTTCATGGACTTTCTGCAGGAAATCAAAGTGGTCATACCGCTGTTGTTGCATGTCCAACTGATACGGATGCTGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTAAAGCGTCACTTTGGACTCCAAATGGCGGATCTGGAAGACAGTTAATGAGCTCGCTCTTACAAGCTGCTGATAACTGGCTAACACTTCTTCAGGTCAATCATCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAACGATATACTCTCCTCTGTTTGTGGCGAGAAAACCACTCTCTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTGAAGATTCGCTCTAACCTTTAGTTACAATGCTGTTATCTATACTAAGAGACAAAACAAAATTCAAAAAAAAAAAAAAAAC</genome_strand>
        <mrna_strand>AAAAGCTCTGGATGCTTGTTTTCTGACATTTCATTCTCTTCATACACCCATGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCAAAGTGGTCATACCGCTGTTGTTGCATGTCCAACTGATACGGATGCTGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTAAAGCGTCACTTTGGACTCCAAATGGCGGATCTGGAAGACAGTTAATGAGCTCGCTCTTACAAGCTGCTGATAACTGGCTAACACTTCTTCAGGTCAATCATCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAACGATATACTCTCCTCTGTTTGTGGCGAGAAAACCACTCTCTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTGAAGATTCGCTCTAACCTTTAGTTACAATGCTGTTATCTATACTAAGAGACAAAACAAAATTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217974" ref_strand="+" ref_description="SGN-E217974 [cLEL-23-B15](-)">
      <seq>atgctgcccctaagattccactacctgcttttggccttgcttcatacaagtttaaagcgtcactttggactccaaatggcggatatggaagacagttaatgagctcgctcttacaagctggtgataactggctaacacttcttcaggtcaatcatcctgatttcagtttcttctgccagaggtgaaaacgatatactctcctctgtttgtggcgagaaaaccactctctggttgatacagctgttgattttccaaggaaaaatgggttaagacttgaagattcgctctaacctttagttacaatgctgttatctatactaagagacaaaacaaaattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="54369" stop="53416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54069" g_stop="53715" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E217974" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54069" e_stop="53715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTAAAGCGTCACTTTGGACTCCAAATGGCGGATCTGGAAGACAGTTAATGAGCTCGCTCTTACAAGCTGCTGATAACTGGCTAACACTTCTTCAGGTCAATCATCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAACGATATACTCTCCTCTGTTTGTGGCGAGAAAACCACTCTCTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTGAAGATTCGCTCTAACCTTTAGTTACAATGCTGTTATCTATACTAAGAGACAAAACAAAATTCAAAAAAAAAAAAAAAAC</genome_strand>
        <mrna_strand>ATGCTGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTAAAGCGTCACTTTGGACTCCAAATGGCGGATATGGAAGACAGTTAATGAGCTCGCTCTTACAAGCTGGTGATAACTGGCTAACACTTCTTCAGGTCAATCATCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAACGATATACTCTCCTCTGTTTGTGGCGAGAAAACCACTCTCTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTGAAGATTCGCTCTAACCTTTAGTTACAATGCTGTTATCTATACTAAGAGACAAAACAAAATTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218050" ref_strand="+" ref_description="SGN-E218050 [cLEL-23-B15](-)">
      <seq>ctgcccctaagattccactacctgcttttggccttgcttcatacaagtttacagcgtcactttggactccaaatggcggatctggaagacagttaatgagctcgctcttacaagctgctgataactggctaacacttcttcaggtcaatcatcctgatttcagtttcttctgccagaggtgaaaacgatatactctcctctgtttgtggcgagaaaaccactctctggttgatacagctgttgattttccaaggaaaaatgggttaagacttgaagattcgctctaacctttagttacaatgctgttatctatcctaagagacaaaacaaaattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="54366" stop="53416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54066" g_stop="53715" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E218050" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54066" e_stop="53715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTAAAGCGTCACTTTGGACTCCAAATGGCGGATCTGGAAGACAGTTAATGAGCTCGCTCTTACAAGCTGCTGATAACTGGCTAACACTTCTTCAGGTCAATCATCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAACGATATACTCTCCTCTGTTTGTGGCGAGAAAACCACTCTCTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTGAAGATTCGCTCTAACCTTTAGTTACAATGCTGTTATCTATACTAAGAGACAAAACAAAATTCAAAAAAAAAAAAAAAAC</genome_strand>
        <mrna_strand>CTGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTACAGCGTCACTTTGGACTCCAAATGGCGGATCTGGAAGACAGTTAATGAGCTCGCTCTTACAAGCTGCTGATAACTGGCTAACACTTCTTCAGGTCAATCATCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAACGATATACTCTCCTCTGTTTGTGGCGAGAAAACCACTCTCTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTGAAGATTCGCTCTAACCTTTAGTTACAATGCTGTTATCTATCCTAAGAGACAAAACAAAATTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444292" ref_strand="+" ref_description="SGN-E444292 [cSTA-42-K18]">
      <seq>gtctcgagttttattttgggtgcctacttctttgtttctttttttttaattttgttttgcctcgtagtatagataacagcattgtaactaaaggttagagtgaatccttaagtcttaacccatttttccttggaaaatcaacagctgtatcaaccacagagtggttctctaaccacaaacagaggagagtatctcattttcacctctggcagaagaaactgaaatcagggtgattgacctgaagaagcgttagccggttatcagcagcttgtaagagcgagctcattaaatgtcttccaggtccgccatttggagtccaaagtgacgctttaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="53412" stop="54321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53716" g_stop="54021" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="336" r_length="306" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E444292" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53716" e_stop="54021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTTTTTGAATTTTGTTTTGTCTCTTAGTATAGATAACAGCATTGTAACTAAAGGTTAGAGCGAATCTTCAAGTCTTAACCCATTTTTCCTTGGAAAATCAACAGCTGTATCAACCAGAGAGTGGTTTTCTCGCCACAAACAGAGGAGAGTATATCGTTTTCACCTCTGGCAGAAGAAACTGAAATCAGGATGATTGACCTGAAGAAGTGTTAGCCAGTTATCAGCAGCTTGTAAGAGCGAGCTCATTAACTGTCTTCCAGATCCGCCATTTGGAGTCCAAAGTGACGCTTTAAACT</genome_strand>
        <mrna_strand>TTTGTTTCTTTTTTTTTAATTTTGTTTTGCCTCGTAGTATAGATAACAGCATTGTAACTAAAGGTTAGAGTGAATCCTTAAGTCTTAACCCATTTTTCCTTGGAAAATCAACAGCTGTATCAACCACAGAGTGGTTCTCTAACCACAAACAGAGGAGAGTATCTCATTTTCACCTCTGGCAGAAGAAACTGAAATCAGGGTGATTGACCTGAAGAAGCGTTAGCCGGTTATCAGCAGCTTGTAAGAGCGAGCTCATTAAATGTCTTCCAGGTCCGCCATTTGGAGTCCAAAGTGACGCTTTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207293" ref_strand="+" ref_description="SGN-E207293 [cLEC-30-M6]">
      <seq>ttttgaaatctgttactccttcagttcctgctcaatatctatcaaagacaactattaggggttggaggacgtgtgatgtggagtttctgccttactatgtacttggcgacttatgggagtcttttaaagaatggagtgcttatggagctggagttccattggttttggatgaaggtgatagtgcagttcagtactatgtgccctatttgtcaggtattcagttgtatggcgactcttcaaaggcttcagtcaaaacaaggcgaccaggtgaggagagtgatagtgactattttcgggattccagtagtgatggaagtagtgactctgaacacgagagacgttgcttgaattattcaagggagcaacggatgtatcatagccaagcaagtgaaagctctcttagtatcgatgggttatcattaagagacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="59795" stop="55479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59495" g_stop="59449" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59448" i_stop="58760" i_length="689">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58759" g_stop="58548" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="259" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58547" i_stop="55951" i_length="2597">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55950" g_stop="55779" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="431" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E207293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59495" e_stop="59449"/>
          <exon e_start="58759" e_stop="58548"/>
          <exon e_start="55950" e_stop="55779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAAATCTGTTACTCCTTCAGTTCCTGCTCAATATCTATCAAAGGTTTAAAAAAATCATGGCTTTTTGTTATTTAGCCGTTTAATTAGATTTTTAAACTCTTTTTATGGGTTTTGATTGAAAATACTTGAGCTTGTATTTAGTGATGAGTTATTCAAGAGTTCTATTGATTGGATTAGTAGAAAAAGTGTAATACTTTTATTTCGTTGTTGTTACTGTTCTTTCTCTGTTTCGTTGTGTAATGCTCTCTATTTCGTATTATTTCATTGTTGTTATTCCTGTCATATCTATATCTCCTTTTTCAAACTGTCTGGCATGGTTTATTTAGTCTGAGGGTCTACTGGAAATCACCTCTCTATCTCTACGAAGTAGAGGTAAGGTCTGGGAACACTCAACCCACCTCAGGCCTGCACTTGTTGGATTACACTTGGTATATTGTTGTTGTAGTTTGTTGTTAAGATTATAGGTTTTGATTGAAAATGGTTGTATTGGTTTAAAGCTTGCTGGAGTTTGGTCGGAATGAAAGTTTAACTGCCATTCATTGTTAAGATTATATGTTTTGATTGGCGAATGGTTTTATTGATATAAAGATTTAATCTTTTACTGGGTATTGATTGATAGTTTTACTGTAGTATATTGGCTGTGGTTTGAAATTTAAGTGTTAAAGAAAAATTATCACTTGTTTGTTGTTAATATTACAAGTTTTGAGTGAAAAATGGTTGTGTTTGTAACAGACAACTATTAGGGGTTGGAGGACGTGTGATGTGGAGTTTCTGCCTTACTATGTACTTGGCGACTTATGGGAGTCTTTTAAAGAATGGAGTGCTTATGGAGCTGGAGTTCCATTGGTTTTGGATGAAGGTGATAGTGCAGTTCAGTACTATGTGCCCTATTTGTCAGGTATTCAGTTGTATGGCGACTCTTCAAAGGCTTCAGTCAAAACAAGGTATATATTTGCTTGTTTTTTCCTTCCATGTTTAAAATTAGTTTTTTGTTCCTCATGGCACAGCCAAATTTTCTGGTCTTGTGAATTGATTGTCTCAATACCACACACTGAAGGTGCTTGTTTTTGTTTTATCTATGGTTTTATGTATACTCCTTGATGCTTATTTCAGTTCCACTATTATTATTGGGTATATTTAGGTTTTATAAGTAATGATCATCTTCTTTGACATTAAGTGCGGATACAGGATAGTTGCGGCTTTGATTAAAAATTGTGTATAATAATCTTGGTGTACATTATCAGAGACTCAGCAAGGAGAGTTTTTGCATGATATTTTCTTTGTTTGCATTTTCCAATTCCTCTTTGTCGTTACTGCATAATGTTTTTGCCGATGTTGTTCGGAGTCTTCATATATGTTGACGGTGTGTATGTCAGAAAGTAGTGCATTTTTGAAGTATCCAACTCGGGTGGGGCCTCATTTTTGGAGAGTTCCAGCAACATAGGTTTTTTGGTGGAAAATTCTACATGATATTGATCATGATAAGAGAAGATAGTTCTGTCAGCATCTTTTCAATAAAGAAGTGGAAAGCAAAGAGTTCTCAAGACATACAGACAGAGGCTAGAAATTGTCTACCTGCTTCATTCCGCTTTTATAATGTCATTAACTTACTGTTTCTGGAATGAGCTTTTGGGTAAATGTGTGGGTTGCAAAGTATCCAAATCGGTATCCGCTTCCGAGACGTGGCTCTTTAACCAAATACCTCAGTCGTCTTTTTAGATGGCATCTTACCATGATTGTGCATTTCTTTGTCGACCAATAGGTTGCTGCTTCTGTAAGAGCTTTCATAGCCTTTGCTTGGGCATCTCTTAAACCTAATGGTTACTTTCTCACTTAGTCTTTGTGGATAGATGCAAAACCTATCCTCACTATCTGAGGAGTCCAAAAATACGTCCAGTTGTCACCGTAGTTTATATAGATAGAACTGAAAGTGTGGGCACTGAAAGTGTGGGCCTGATGCGGATACAGAAACTGGTTGTTTTTCTTTTTCTTATTCAGGGAAATGCCATCTCATGCTTACTTTATGAAGAGAAATAATTTTTCCCATTAAGTTAAATAGATAAATAGTTCATCACTTTATTTTCAGTCAGTCAATAAGTTTCTTTAATTTACCTTTGGGAATATGATGCCCCCCAAGTTGGATAATTTGATTGTAGGTTTGGATTTCTTCATAGGGTAATTGTGGAAAGGGTGGAGAGTTCTAGAGTAAATTTGGAGGTCGTCTCTATAAACACTGTTGCCTCCAATGTCTTTGAATTCAATTTTTTACAGTCATCCTTTTTTACGTGATACTAGTACAATTTGCTACACTATGTTATCTAAATTAGCTTGACATGCCGGTACTAGCCACTAAAATACATGAATCAAAACTTGAGGTTGTTAACTGTTTTGAGGATCTTCTTTGATGAGCTCTCAAACATATTAGTATATGTTCAACTAATTTCCTTATTTAGGGAGTAAATGTTCTGCTTTTCTGTCACCTCCTCCCCGCTAGCTGATAAGAGAACCTCTGTCCTCTAGTGCTACATTTGTTAAAATATCCATTTTTTATACATACATTCAGTATATATCTATATCTATATATATATATATATATATATATATATATATATATATATAGGATTTTAGAAATATGTACATACAGATTATTTATAATGATTGAATTGCATGCTATTCTGGTTATCTTGATGTTTAGCTTATACTTGTTGTTCGATTTGGTGCTGTAGTGAGCTTAACACTTCCATCTTACTAGGAAGACCCAAAGAACCGTGTATGAAGGGGTTGTTTGGTATGTAGGATGGGATAAACAATGTTATTCCATGATTGGGATATTCCATGGGATAAAGTTATTCCACCATATATATGGATAACACCATCATTGTAGTATACATGGTGGGATAAATAATCCCGGGACTAATTAATACCCCTAAGGCCCTAACCAAATGCAAGATAAAATCATTATGCATTTTATCCTGGGATTATTATCCCTTGTACCAATCTACCCCTTAGAATGATAAATGCTAGTTTTTTTAACCAATCAAAACATGCTATATATTCTTTCCATTTATTTTTTATGGTAAGCACTGAACCAGGCTTCTTATTTACGCTTTGCTTTTCTCTCCCTCTCCCTCTTCTTGAGTCTGCCTTTCCCTATTCTCGATGTGCGTTTTCTGCTTTCGAAAATAGGAGCAGAATATTTGGTCAAATGCTATGGAATTACTATTTTCCATCCTCTCTTCTACATCCATCTTTCTTTCTGATGTATCATTTATATCCTGCGCTTTCCTGAAATATTGTTGATCTCAATACACTTCGTTAGCTAGTATATGGATGGTCATGTGGCATATAGCTAGATCTCATGTTTCATGTGTGTGTTTATGTTGTAAATGCACATGATTCTGTCTCAAAGATTGTCCTACACTACTATGCACCTACTGTATTCTGAAAGGGTCAAAAACCTTGAATTGGTGTTGTTTAGATTTTGATTGAGTAGCTTTAAGAAACATATGATATTGAATTGACATTTTCTCTTGCATAGTAGGCGACCAGGTGAGGAGAGTGATAGTGACTATTTTCGGGATTCCAGTAGTGATGGAAGTAGTGACTCTGAACACGAGAGACGTTGCTTGAATTATTCAAGGGAGCAACGGATGTATCATAGCCAAGCAAGTGAAAGCTCTCTTAGTATCGATGGGTTATCATTAAGAGACAGT</genome_strand>
        <mrna_strand>TTTTGAAATCTGTTACTCCTTCAGTTCCTGCTCAATATCTATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTATTAGGGGTTGGAGGACGTGTGATGTGGAGTTTCTGCCTTACTATGTACTTGGCGACTTATGGGAGTCTTTTAAAGAATGGAGTGCTTATGGAGCTGGAGTTCCATTGGTTTTGGATGAAGGTGATAGTGCAGTTCAGTACTATGTGCCCTATTTGTCAGGTATTCAGTTGTATGGCGACTCTTCAAAGGCTTCAGTCAAAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCAGGTGAGGAGAGTGATAGTGACTATTTTCGGGATTCCAGTAGTGATGGAAGTAGTGACTCTGAACACGAGAGACGTTGCTTGAATTATTCAAGGGAGCAACGGATGTATCATAGCCAAGCAAGTGAAAGCTCTCTTAGTATCGATGGGTTATCATTAAGAGACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702041" ref_strand="+" ref_description="SGN-E702041 [FA17CE11]">
      <seq>ttttattctgtcactctgcttttctctctctctctctctccattttcaactgcaaattttcaatttgaatccaaaaaaaattctctttttatacaaatccacatgctctttgattaatatatttgttagtaatattttgatctgagtcaatatttgctagggtttatataaattctccataaacttcaatttatcgaatttttaccatttctttttgtgtggctaatttttactcgtttgattcatttctgcgagaatcaattagcctaatcagccccttttcgttttcttgaagaatttctgagaaaatcgatatataaagtgcaatttatcgatatatatttgggaaaaaagggatttttttttggatatagatagagattttaggggtttttaatataaagagatgatgggtagtggattacagtttaatcggagttttaacggtgaagatcggttttatagtgctgcgaaggctcgccggaatgttaatcggagttttaatggtgaggataatttaaggagagctaagagtgatgttgctgttagtaattttccgacgaagactaaaatgaaggtggctgccgtcgatgaatcaacgaaggagttaccggttgctgctgccgtgccggcatcggaagttttgccgctttgtaatctacagcggtttttgaaatctgttactccttcagttcctgctcaatatctatcaaagacaactattaggggttggaggacgtgtgatgtggagtttctgccttactatgtacttggcgacttatgggagtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="60463" stop="58384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60163" g_stop="59449" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59448" i_stop="58760" i_length="689">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58759" g_stop="58684" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="791" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E702041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60163" e_stop="59449"/>
          <exon e_start="58759" e_stop="58684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTCTGTCACTCTGCTTTTCTCTCTCTCTCTCTCTCCATTTTCAACTGCAAATTTTCAATTTGAATCCAAAAAAAATTCTCTTTTTATACAAATCCACATGCTCTTTGATTAATATATTTGTTAGTAATATTTTGATCTGAGTCAATATTTGCTAGGGTTTATATAAATTCTCCATAAACTTCAATTTATCGAATTTTTACCATTTCTTTTTGTGTGGCTAATTTTTACTCGTTTGATTCATTTCTGCGAGAATCAATTAGCCTAATCAGCCCCTTTTCGTTTTCTTGAAGAATTTCTGAGAAAATCGATATATAAAGTGCAATTTATCGATATATATTTGGGAAAAAAGGGATTTTTTTTTGGATATAGATAGAGATTTTAGGGGTTTTTAATATAAAGAGATGATGGGTAGTGGATTACAGTTTAATCGGAGTTTTAACGGTGAAGATCGGTTTTATAGTGCTGCGAAGGCTCGCCGGAATGTTAATCGGAGTTTTAATGGTGAGGATAATTTAAGGAGAGCTAAGAGTGATGTTGCTGTTAGTAATTTTCCGACGAAGACTAAAATGAAGGTGGCTGCCGTCGATGAATCAACGAAGGAGTTACCGGTTGCTGCTGCCGTGCCGGCATCGGAAGTTTTGCCGCTTTGTAATCTACAGCGGTTTTTGAAATCTGTTACTCCTTCAGTTCCTGCTCAATATCTATCAAAGGTTTAAAAAAATCATGGCTTTTTGTTATTTAGCCGTTTAATTAGATTTTTAAACTCTTTTTATGGGTTTTGATTGAAAATACTTGAGCTTGTATTTAGTGATGAGTTATTCAAGAGTTCTATTGATTGGATTAGTAGAAAAAGTGTAATACTTTTATTTCGTTGTTGTTACTGTTCTTTCTCTGTTTCGTTGTGTAATGCTCTCTATTTCGTATTATTTCATTGTTGTTATTCCTGTCATATCTATATCTCCTTTTTCAAACTGTCTGGCATGGTTTATTTAGTCTGAGGGTCTACTGGAAATCACCTCTCTATCTCTACGAAGTAGAGGTAAGGTCTGGGAACACTCAACCCACCTCAGGCCTGCACTTGTTGGATTACACTTGGTATATTGTTGTTGTAGTTTGTTGTTAAGATTATAGGTTTTGATTGAAAATGGTTGTATTGGTTTAAAGCTTGCTGGAGTTTGGTCGGAATGAAAGTTTAACTGCCATTCATTGTTAAGATTATATGTTTTGATTGGCGAATGGTTTTATTGATATAAAGATTTAATCTTTTACTGGGTATTGATTGATAGTTTTACTGTAGTATATTGGCTGTGGTTTGAAATTTAAGTGTTAAAGAAAAATTATCACTTGTTTGTTGTTAATATTACAAGTTTTGAGTGAAAAATGGTTGTGTTTGTAACAGACAACTATTAGGGGTTGGAGGACGTGTGATGTGGAGTTTCTGCCTTACTATGTACTTGGCGACTTATGGGAGTCTT</genome_strand>
        <mrna_strand>TTTTATTCTGTCACTCTGCTTTTCTCTCTCTCTCTCTCTCCATTTTCAACTGCAAATTTTCAATTTGAATCCAAAAAAAATTCTCTTTTTATACAAATCCACATGCTCTTTGATTAATATATTTGTTAGTAATATTTTGATCTGAGTCAATATTTGCTAGGGTTTATATAAATTCTCCATAAACTTCAATTTATCGAATTTTTACCATTTCTTTTTGTGTGGCTAATTTTTACTCGTTTGATTCATTTCTGCGAGAATCAATTAGCCTAATCAGCCCCTTTTCGTTTTCTTGAAGAATTTCTGAGAAAATCGATATATAAAGTGCAATTTATCGATATATATTTGGGAAAAAAGGGATTTTTTTTTGGATATAGATAGAGATTTTAGGGGTTTTTAATATAAAGAGATGATGGGTAGTGGATTACAGTTTAATCGGAGTTTTAACGGTGAAGATCGGTTTTATAGTGCTGCGAAGGCTCGCCGGAATGTTAATCGGAGTTTTAATGGTGAGGATAATTTAAGGAGAGCTAAGAGTGATGTTGCTGTTAGTAATTTTCCGACGAAGACTAAAATGAAGGTGGCTGCCGTCGATGAATCAACGAAGGAGTTACCGGTTGCTGCTGCCGTGCCGGCATCGGAAGTTTTGCCGCTTTGTAATCTACAGCGGTTTTTGAAATCTGTTACTCCTTCAGTTCCTGCTCAATATCTATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTATTAGGGGTTGGAGGACGTGTGATGTGGAGTTTCTGCCTTACTATGTACTTGGCGACTTATGGGAGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470515" ref_strand="+" ref_description="SGN-E470515 [cSTB-18-F1]">
      <seq>attttgatctgagtcaatatttgctagggtttatataaattctcaattcatcgaatttttaccaaaaaaaataattaatttttttgttgtggctaatttttcctcgtttgattcatttctacgagaatcaattagcctaatcaaccccttttcgttttcttgaagaatttctgagataatcgatatataaattgcaatttatcgatatatatagaggaaaaaaaggatttttttttggatatagatagagatatttggggtttttcatataaagagatgatgggtagtggattacagtttaatcggagttttaacggtgaagatcggttttatagtgctgcgaaggctcgtcggaatgttaatcggagttttaatggtgaggataatttacggagagctaagagtgatgttgctgttagtaattttccggcgaagacgaaaatgaaggtggctgccgtcgatgaatcgacgaaggagttaccggtcgctgctgccgtgccgacatcggaagttttgccgctttgtaatctacagcggtttttgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="60330" stop="59186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60030" g_stop="59486" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E470515" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60030" e_stop="59486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGATCTGAGTCAATATTTGCTAGGGTTTATATAAATTCTCCATAAACTTCAATTTATCGAATTTTTACCATT--TCTTTTTGT-GTGGCTAATTTTTACTCGTTTGATTCATTTCTGCGAGAATCAATTAGCCTAATCAGCCCCTTTTCGTTTTCTTGAAGAATTTCTGAGAAAATCGATATATAAAGTGCAATTTATCGATATATATTTGGGAAAAAAGGGATTTTTTTTTGGATATAGATAGAGATTTTAGGGGTTTTTAATATAAAGAGATGATGGGTAGTGGATTACAGTTTAATCGGAGTTTTAACGGTGAAGATCGGTTTTATAGTGCTGCGAAGGCTCGCCGGAATGTTAATCGGAGTTTTAATGGTGAGGATAATTTAAGGAGAGCTAAGAGTGATGTTGCTGTTAGTAATTTTCCGACGAAGACTAAAATGAAGGTGGCTGCCGTCGATGAATCAACGAAGGAGTTACCGGTTGCTGCTGCCGTGCCGGCATCGGAAGTTTTGCCGCTTTGTAATCTACAGCGGTTTTTGAAATC</genome_strand>
        <mrna_strand>ATTTTGATCTGAGTCAATATTTGCTAGGGTTTATATAAATTCTCAATTCATCGAATTTTTACCAAAAAAAATAATTAATTTTTTTGTTGTGGCTAATTTTTCCTCGTTTGATTCATTTCTACGAGAATCAATTAGCCTAATCAACCCCTTTTCGTTTTCTTGAAGAATTTCTGAGATAATCGATATATAAATTGCAATTTATCGATATATATAGAGGAAAAAAAGGATTTTTTTTTGGATATAGATAGAGATATTTGGGGTTTTTCATATAAAGAGATGATGGGTAGTGGATTACAGTTTAATCGGAGTTTTAACGGTGAAGATCGGTTTTATAGTGCTGCGAAGGCTCGTCGGAATGTTAATCGGAGTTTTAATGGTGAGGATAATTTACGGAGAGCTAAGAGTGATGTTGCTGTTAGTAATTTTCCGGCGAAGACGAAAATGAAGGTGGCTGCCGTCGATGAATCGACGAAGGAGTTACCGGTCGCTGCTGCCGTGCCGACATCGGAAGTTTTGCCGCTTTGTAATCTACAGCGGTTTTTGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324878" ref_strand="+" ref_description="SGN-E324878 [cTOC-11-N13]">
      <seq>tttaattgtactataataatgctctgtgaatatgactggtgacactaaaagcagccatgtttattgcaatttgaagcttaataatcatcagtcaaaaagtttattggtcaataaatgcaactttttttattttttggttaaaaaattatcttgaaaattcaatctttgtgtgattggaggtagatacatagtcaacccttttgtcagaaccagttgtagagaatttgtaaagcaaaaaaatccatatttttgcttaaaagttcaatctttcttctaaaggaaaaaacccaagaaaccccttttctctttttagtgtatttttcattatctacttgtttagtttgtatattttcaggtgttctcaagattacagatgaaccaagaaaaaaggtatttcttgatagtatcatcaaacctttgtgttttatgcttcattttgcaaatagataaatgttctgctgttgatccacagtttgtagtgtgtaataaatcactaaattgtagatatggtccaagaataagctttccattttatattgaagatgttcaagaatcttactgtgggtaccctggatttgggctaaattgtagtgaacaagggtttcctgttgtacatattgctggaaatgagtatgtagttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="70853" stop="72096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71153" g_stop="71796" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E324878" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71153" e_stop="71796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTGTACTATAATAATCCTCTGTGAATATGACTAATGACACTAAAAGCAGCCATTTTTATTGCAATTTGAAGCTTAATAATCATCAGTCAAAAAGTTTATTGGTCAATAAATGCAACTTTTTTTATTTTTTGGTTAAAAAATTATCTTGAAAATTCAATCTTTGTGTGATTGGAGGTAGATACATAGTCAACCCTTTTGTCAGAACCAGTTGTAGAGAATTTGTAAAGCAAAAAAATCCATATTTTTGCTTAAAAGTTCAATCTTTCTTCTAAAGGAAAAAACCCAAGAAACCCCTTTTCTCTTTTTAGTGTATTTTTCATTATCTACTTGTTTAGTTTGTATATTTTCAGGTGTTCTCAAGATTACAGATGAACCAAGAAAAAAGGTATTTCTTGATAGTATCATCAAACCTTTGTGTTTTATGCTTCATTTTGCAAATAGATAAATGTTCTGCTGTTGATCCACAGTTTGTAGTGTGTAATAAATCAGTAAATTGTAGATATGGTCCAAGAATAAGCTTTCCATTTTATATTGAAGATGTTCAAGAATCTTACTGTGGGTACCCTGGATTTGGGCTAAATTGTAGTGAACAAGGGTTTCCTGTTGTACATATTGCTGGAAATGAGTATGTAGTTGAAG</genome_strand>
        <mrna_strand>TTTAATTGTACTATAATAATGCTCTGTGAATATGACTGGTGACACTAAAAGCAGCCATGTTTATTGCAATTTGAAGCTTAATAATCATCAGTCAAAAAGTTTATTGGTCAATAAATGCAACTTTTTTTATTTTTTGGTTAAAAAATTATCTTGAAAATTCAATCTTTGTGTGATTGGAGGTAGATACATAGTCAACCCTTTTGTCAGAACCAGTTGTAGAGAATTTGTAAAGCAAAAAAATCCATATTTTTGCTTAAAAGTTCAATCTTTCTTCTAAAGGAAAAAACCCAAGAAACCCCTTTTCTCTTTTTAGTGTATTTTTCATTATCTACTTGTTTAGTTTGTATATTTTCAGGTGTTCTCAAGATTACAGATGAACCAAGAAAAAAGGTATTTCTTGATAGTATCATCAAACCTTTGTGTTTTATGCTTCATTTTGCAAATAGATAAATGTTCTGCTGTTGATCCACAGTTTGTAGTGTGTAATAAATCACTAAATTGTAGATATGGTCCAAGAATAAGCTTTCCATTTTATATTGAAGATGTTCAAGAATCTTACTGTGGGTACCCTGGATTTGGGCTAAATTGTAGTGAACAAGGGTTTCCTGTTGTACATATTGCTGGAAATGAGTATGTAGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563781" ref_strand="+" ref_description="SGN-E563781 [2222]">
      <seq>gccagttgcagagagcaaaaaaatccatctttttgcttaaaaaatcaatcttgcttctataggaaaaaacccaagaaaccccttttctctttttagtataattttcattatctacttgtttagtttgtatattttcatctgttttcaagattacaaatgaaacaagaaaaaaggtatttcttgatagtatcattaaacctttgtgttttatgcttcattttgcaaatagataaatgttgtgctgttgatccacagtttgtagtatgtaataaatcagtaaattgtagatatggtccaagaataagctttccattttatattgaacatgttcaagaatcttattgtgggtaccctgggatttgggctaaattgtagtgaacaagggtttcctgttgtacatataagctggaaatgagtatgtagttgacgatattagatatcaaggatcagtaccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="71075" stop="72122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71385" g_stop="71811" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="444" r_length="429" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E563781" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71385" e_stop="71811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAATCCATATTTTTGCTTAAAAGTTCAATCTTTCTTCTAAAGGAAAAAACCCAAGAAACCCCTTTTCTCTTTTTAGTGTATTTTTCATTATCTACTTGTTTAGTTTGTATATTTTCAGGTGTTCTCAAGATTACAGATGAACCAAGAAAAAAGGTATTTCTTGATAGTATCATCAAACCTTTGTGTTTTATGCTTCATTTTGCAAATAGATAAATGTTCTGCTGTTGATCCACAGTTTGTAGTGTGTAATAAATCAGTAAATTGTAGATATGGTCCAAGAATAAGCTTTCCATTTTATATTGAAGATGTTCAAGAATCTTACTGTGGGTACCCT-GGATTTGGGCTAAATTGTAGTGAACAAGGGTTTCCTGTTGTACATAT-TGCTGGAAATGAGTATGTAGTTGAAGATATTAGATATCAAG</genome_strand>
        <mrna_strand>CAAAAAAATCCATCTTTTTGCTTAAAAAATCAATCTTGCTTCTATAGGAAAAAACCCAAGAAACCCCTTTTCTCTTTTTAGTATAATTTTCATTATCTACTTGTTTAGTTTGTATATTTTCATCTGTTTTCAAGATTACAAATGAAACAAGAAAAAAGGTATTTCTTGATAGTATCATTAAACCTTTGTGTTTTATGCTTCATTTTGCAAATAGATAAATGTTGTGCTGTTGATCCACAGTTTGTAGTATGTAATAAATCAGTAAATTGTAGATATGGTCCAAGAATAAGCTTTCCATTTTATATTGAACATGTTCAAGAATCTTATTGTGGGTACCCTGGGATTTGGGCTAAATTGTAGTGAACAAGGGTTTCCTGTTGTACATATAAGCTGGAAATGAGTATGTAGTTGACGATATTAGATATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339232" ref_strand="+" ref_description="SGN-E339232 [cTOF-4-C20]">
      <seq>gaaattgaaattctctctcgcctacggcatcgaaatcttgttaccctttatggttgcacatcaaagcatagccgtgaactcctccttgtttatgaatacattcccaatggaacagtggcagatcacctgaatggggatagagcaaaggacggattcctcccatggcctatccgcatgaatattgctgtagaaactgcttgtgcattggcttacctccatgcttctggcacaatacatcgcgatgtaaagactagcaacatactcctcgacagcaattgttgtgtcaaagttgcagattttgggctttcgagactttttccaaatgatgctactcatgtctcaactgctcctcaagggactgctggatatgttgatccagagtatcatgaatgttaccagctcactgataaaagtgatgtttacagtttcggtgttgtccttgttgaacttatctcatcaatgcctgctgttgatattaccaggagtcgacatgaaatcaatttggccaacttagcaataaacaggattcagagatgtgcatttgatgagctgattgatccatctctgggatttaaatcagatgcacaggttatgagaatgactacttcagtagcagagctagcatttcaatgcttgcagcttgaaacagacttgagaccaaaaatgnatgaagtattagagacacttaaacatatacaaggcacctatactgatcacatcaaagatgagaagacgaatgactcaattgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="75187" stop="76537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75487" g_stop="76237" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E339232" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75487" e_stop="76237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGAAATTCTCTCTCGCCTACGGCATCGAAATCTTGTTACCCTTTATGGTTGCACATCAAAGCATAGCCGTGAACTCCTCCTTGTTTATGAATACATTCCCAATGGAACAGTGGCAGATCACCTGAATGGGGATAGAGCAAAGGACGGATTCCTCCCATGGCCTATCCGCATGAATATTGCTGTAGAAACTGCTTGTGCATTGGCTTACCTCCATGCTTCTGGCACAATACATCGCGATGTAAAGACTAGCAACATACTCCTCGACAGCAATTGTTGTGTCAAAGTTGCAGATTTTGGGCTTTCGAGACTTTTTCCAAATGATGCTACTCATGTCTCAACTGCTCCTCAAGGGACTGCTGGATATGTTGATCCAGAGTATCATGAATGTTACCAGCTCACTGATAAAAGTGATGTTTACAGTTTCGGTGTTGTCCTTGTTGAACTTATCTCATCAATGCCTGCTGTTGATATTACCAGGAGTCGACATGAAATCAATTTGGCCAACTTAGCAATAAACAGGATTCAGAGATGTGCATTTGATGAGCTGATTGATCCATCTCTGGGATTTAAATCAGATGCACAGGTTATGAGAATGACTACTTCAGTAGCAGAGCTAGCATTTCAATGCTTGCAGCTTGAAACAGACTTGAGACCAAAAATGGATGAAGTATTAGAGACACTTAAACATATACAAGGCACCTATACTGATCACATCAAAGATGAGAAGACGAATGACTCAATTGTCG</genome_strand>
        <mrna_strand>GAAATTGAAATTCTCTCTCGCCTACGGCATCGAAATCTTGTTACCCTTTATGGTTGCACATCAAAGCATAGCCGTGAACTCCTCCTTGTTTATGAATACATTCCCAATGGAACAGTGGCAGATCACCTGAATGGGGATAGAGCAAAGGACGGATTCCTCCCATGGCCTATCCGCATGAATATTGCTGTAGAAACTGCTTGTGCATTGGCTTACCTCCATGCTTCTGGCACAATACATCGCGATGTAAAGACTAGCAACATACTCCTCGACAGCAATTGTTGTGTCAAAGTTGCAGATTTTGGGCTTTCGAGACTTTTTCCAAATGATGCTACTCATGTCTCAACTGCTCCTCAAGGGACTGCTGGATATGTTGATCCAGAGTATCATGAATGTTACCAGCTCACTGATAAAAGTGATGTTTACAGTTTCGGTGTTGTCCTTGTTGAACTTATCTCATCAATGCCTGCTGTTGATATTACCAGGAGTCGACATGAAATCAATTTGGCCAACTTAGCAATAAACAGGATTCAGAGATGTGCATTTGATGAGCTGATTGATCCATCTCTGGGATTTAAATCAGATGCACAGGTTATGAGAATGACTACTTCAGTAGCAGAGCTAGCATTTCAATGCTTGCAGCTTGAAACAGACTTGAGACCAAAAATGNATGAAGTATTAGAGACACTTAAACATATACAAGGCACCTATACTGATCACATCAAAGATGAGAAGACGAATGACTCAATTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287032" ref_strand="+" ref_description="SGN-E287032 [cLES-6-N11]">
      <seq>gagaatggagagtggaaaagtctttaattttgaccctcacttgaagtttgtttcatttttccaaagtcttggtaacaaaattccaagttcacatatagaaaaataaaccagataacaaggttaaattccaatttcttgctgtgtgagaccatatagagtaaacaatatggcttctgttttcttttttttgtgttgcgtagtgatctttagcctacatcaagtactaggtaattccaaatccaactgcaccgatgagttcgagtgtggaggccttggagctatgaagtttcctttcacaaataccaccaaccctgagtgtggattatgcaggtttgattgtcatactaaaccatatcctacaattaaacttggtggacacaaatatgatgctgtagtgaagaggggtgatttattccttatttcagatcctaaacttcaagagtacttagagcacaaaagttgcaagtcttttgacagaaacttctcatttccaaattcccctttgattgctttccaaattgttcctaacttaaccttgtacaaatgcaaacatagccataaaaacatcatccataagacaaatgattcttttttcaaagattctgatcaatatactgagtgtgaaggttttaatgtttactatcaccatcccaagaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="77787" stop="79046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78087" g_stop="78746" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E287032" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78087" e_stop="78746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGGAGAGTGGAAAAGTCTTTAATTTTGACCCTCACTTGAAGTTTGTTTCATTTTTCCAAAGTCTTGGTAACAAAATTCCAAGTTCACATATAGAAAAATAAACCAGATAACAAGGTTAAATTCCAATTTCTTGCTGTGTGAGACCATATAGAGTAAACAATATGGCTTCTGTTTTCTTTTTTTTGTGTTGTGTAGTGATCTTTAGCCTACATCAAGTACTAGGTAATTCCAAATCCAACTGCACCGATGAGTTCGAGTGTGGAGGCCTTGGAGCTATGAAGTTTCCTTTCACAAATACCACCAACCCTGAGTGTGGATTATGCAGGTTTGATTGTCATACTAAACCATATCCTACAATTAAACTTGGTGGACACAAATATGATGCTGTAGTGAAGAGGGGTGATTTATTCCTTATTTCAGATCCTAAACTTCAAGAGTACTTAGAGCACAAAAGTTGCAAGTCTTTTGACAGAAACTTCTCATTTCCAAATTCCCCTTTGATTTCTTTCCAAATTGTTCCTAACTTAACCTTGTACAAATGCAAACATAGCCATAAAAACAACATCCAGAAGACAAATGATTCTTTTTTCAAAGATTTTGATCAATATACTGAGTGTGAAGGTTTTAATGTTTACTATCACCATCCCAAGAAAAC</genome_strand>
        <mrna_strand>GAGAATGGAGAGTGGAAAAGTCTTTAATTTTGACCCTCACTTGAAGTTTGTTTCATTTTTCCAAAGTCTTGGTAACAAAATTCCAAGTTCACATATAGAAAAATAAACCAGATAACAAGGTTAAATTCCAATTTCTTGCTGTGTGAGACCATATAGAGTAAACAATATGGCTTCTGTTTTCTTTTTTTTGTGTTGCGTAGTGATCTTTAGCCTACATCAAGTACTAGGTAATTCCAAATCCAACTGCACCGATGAGTTCGAGTGTGGAGGCCTTGGAGCTATGAAGTTTCCTTTCACAAATACCACCAACCCTGAGTGTGGATTATGCAGGTTTGATTGTCATACTAAACCATATCCTACAATTAAACTTGGTGGACACAAATATGATGCTGTAGTGAAGAGGGGTGATTTATTCCTTATTTCAGATCCTAAACTTCAAGAGTACTTAGAGCACAAAAGTTGCAAGTCTTTTGACAGAAACTTCTCATTTCCAAATTCCCCTTTGATTGCTTTCCAAATTGTTCCTAACTTAACCTTGTACAAATGCAAACATAGCCATAAAAACATCATCCATAAGACAAATGATTCTTTTTTCAAAGATTCTGATCAATATACTGAGTGTGAAGGTTTTAATGTTTACTATCACCATCCCAAGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371858" ref_strand="+" ref_description="SGN-E371858 [TUS-30-O3]">
      <seq>gagaatggagagtggaaaagtctttaattttgaccctcacttgaagtttgtttcatttttccaaagtcttggtaacaaaattccaagttcacatatagaaaaataaaccagataacaaggttaaattccaatttcttgctgtgtgagaccatatagagtaaacaatatggcttctgttttcttttttttgtgttgtgtagtgatctttagcctacatcaagtactaggtaattccaaatccaactgcaccgatgagttcgagtgtggaggccttggagctatgaagtttcctttcacaaataccaccaaccctgagtgtggattatgcaggtttgattgtcatactaaaccatatcctacaattaaacttggtggacacaaatatgatgctgtagtgaagaggggtgatttattccttatttcagatcctaaacttcaagagtacttagagcacaaaagttgcaagtcttttgacagaaacttctcatttccaaattcccctttgatttctttccaaattgttcctaacttaaccttgtacaaatgcaaacatagccataaaaacaacatccagaagacaaatgattcttttttcaaagattttgatcaatatactgagtgtgaaggttgtaatgtttactatcaccatcccaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="77787" stop="79044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78087" g_stop="78744" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E371858" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78087" e_stop="78744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGGAGAGTGGAAAAGTCTTTAATTTTGACCCTCACTTGAAGTTTGTTTCATTTTTCCAAAGTCTTGGTAACAAAATTCCAAGTTCACATATAGAAAAATAAACCAGATAACAAGGTTAAATTCCAATTTCTTGCTGTGTGAGACCATATAGAGTAAACAATATGGCTTCTGTTTTCTTTTTTTTGTGTTGTGTAGTGATCTTTAGCCTACATCAAGTACTAGGTAATTCCAAATCCAACTGCACCGATGAGTTCGAGTGTGGAGGCCTTGGAGCTATGAAGTTTCCTTTCACAAATACCACCAACCCTGAGTGTGGATTATGCAGGTTTGATTGTCATACTAAACCATATCCTACAATTAAACTTGGTGGACACAAATATGATGCTGTAGTGAAGAGGGGTGATTTATTCCTTATTTCAGATCCTAAACTTCAAGAGTACTTAGAGCACAAAAGTTGCAAGTCTTTTGACAGAAACTTCTCATTTCCAAATTCCCCTTTGATTTCTTTCCAAATTGTTCCTAACTTAACCTTGTACAAATGCAAACATAGCCATAAAAACAACATCCAGAAGACAAATGATTCTTTTTTCAAAGATTTTGATCAATATACTGAGTGTGAAGGTTTTAATGTTTACTATCACCATCCCAAGAAA</genome_strand>
        <mrna_strand>GAGAATGGAGAGTGGAAAAGTCTTTAATTTTGACCCTCACTTGAAGTTTGTTTCATTTTTCCAAAGTCTTGGTAACAAAATTCCAAGTTCACATATAGAAAAATAAACCAGATAACAAGGTTAAATTCCAATTTCTTGCTGTGTGAGACCATATAGAGTAAACAATATGGCTTCTGTTTTCTTTTTTTTGTGTTGTGTAGTGATCTTTAGCCTACATCAAGTACTAGGTAATTCCAAATCCAACTGCACCGATGAGTTCGAGTGTGGAGGCCTTGGAGCTATGAAGTTTCCTTTCACAAATACCACCAACCCTGAGTGTGGATTATGCAGGTTTGATTGTCATACTAAACCATATCCTACAATTAAACTTGGTGGACACAAATATGATGCTGTAGTGAAGAGGGGTGATTTATTCCTTATTTCAGATCCTAAACTTCAAGAGTACTTAGAGCACAAAAGTTGCAAGTCTTTTGACAGAAACTTCTCATTTCCAAATTCCCCTTTGATTTCTTTCCAAATTGTTCCTAACTTAACCTTGTACAAATGCAAACATAGCCATAAAAACAACATCCAGAAGACAAATGATTCTTTTTTCAAAGATTTTGATCAATATACTGAGTGTGAAGGTTGTAATGTTTACTATCACCATCCCAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371857" ref_strand="+" ref_description="SGN-E371857 [TUS-30-O3](-)">
      <seq>cgagacttttccccaacaacgttactcacatatcaacagctcctcaaggaacactcggctgttgacttgaacaggcaaaagaacgaggtcaatttggctaacttggcgataaacaggatacaaagatgtgcatttgatgaactgatcgatccatcactcgggctaaactcagatacgcttgctaagaaaatgacaatctctgtcgcggagctagcttttcgatgcttgcaacttgataaggatatcaggccaacaatggatgaagtattggacattttaagaaagatccaaggtggagagtttcatcaaaatgagaagacatttgacaatttattcaagtctaagagtgttgatatccctccattttcctctgaatcagatgaagttgcactgttaaagaaagttaagttcataagttcgtcagatactaatagtgaggtatggattagtggctctaccacaacaagcactagtgagtgagtgagtgactatctatgttgctcggaaactcaaaaaatattgctgcactcgtgacaaatccttgtaaaatgtgtggcttttgaaggatctgacgatatttttgaagagttcgagaggtgaatatcttagctaatgtagttttcagacttcagaatctactaactcttagctaaagcatttgagcttataggaattttacatataataaattatgttcatgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="80218" stop="81619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80518" g_stop="80575" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80576" i_stop="80676" i_length="101">
            <donor d_prob="0.376" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80677" g_stop="81318" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="700" r_length="642" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E371857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80518" e_stop="80575"/>
          <exon e_start="80677" e_stop="81318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGACTTTTCCCCAACAACGTTACTCACATATCAACAGCTCCTCAAGGAACACTCGGGTACGTTGATCCTGAGTATCACGAGTGTTATCAGCTTACCGACAAAAGTGATGTTTACAGTTTCGGGGTTGTCCTAATCGAGCTTGTATCATCAATGCCAGCTGTTGACTTGAACAGGCAAAAGAACGAGGTCAATTTGGCTAACTTGGCGATAAACAGGATACAAAGATGTGCATTTGATGAACTGATCGATCCATCACTCGGGCTAAACTCAGATACGCTTGCTAAGAAAATGACAATCTCTGTCGCGGAGCTAGCTTTTCGATGCTTGCAACTTGATAAGGATATCAGGCCAACAATGGATGAAGTATTGGACATTTTAAGAAAGATCCAAGGTGGAGAGTTTCATCAAAATGAGAAGACATTTGACAATTTATTCAAGTCTAAGAGTGTTGATATCCCTCCATTTTCCTCTGAATCAGATGAAGTTGCACTGTTAAAGAAAGTTAAGTTCATAAGTTCGTCAGATACTAATAGTGAGGTATGGATTAGTGGCTCTACCACAACAAGCACTAGTGAGTGAGTGAGTGACTATCTATGTTGCTCGGAAACTCAAAAAATATTGCTGCACTCGTGACAAATCCTTGTAAAATGTGTGGCTTTTGAAGGATCTGACGATATTTTTGAAGAGTTCGAGAGGTGAATATCTTAGCTAATGTAGTTTTCAGACTTCAGAATCTACTAACTCTTAGCTAAAGCATTTGAGCTTATAGGAATTTTACATATAATAAATTATGTTCATG</genome_strand>
        <mrna_strand>CGAGACTTTTCCCCAACAACGTTACTCACATATCAACAGCTCCTCAAGGAACACTCGG.....................................................................................................CTGTTGACTTGAACAGGCAAAAGAACGAGGTCAATTTGGCTAACTTGGCGATAAACAGGATACAAAGATGTGCATTTGATGAACTGATCGATCCATCACTCGGGCTAAACTCAGATACGCTTGCTAAGAAAATGACAATCTCTGTCGCGGAGCTAGCTTTTCGATGCTTGCAACTTGATAAGGATATCAGGCCAACAATGGATGAAGTATTGGACATTTTAAGAAAGATCCAAGGTGGAGAGTTTCATCAAAATGAGAAGACATTTGACAATTTATTCAAGTCTAAGAGTGTTGATATCCCTCCATTTTCCTCTGAATCAGATGAAGTTGCACTGTTAAAGAAAGTTAAGTTCATAAGTTCGTCAGATACTAATAGTGAGGTATGGATTAGTGGCTCTACCACAACAAGCACTAGTGAGTGAGTGAGTGACTATCTATGTTGCTCGGAAACTCAAAAAATATTGCTGCACTCGTGACAAATCCTTGTAAAATGTGTGGCTTTTGAAGGATCTGACGATATTTTTGAAGAGTTCGAGAGGTGAATATCTTAGCTAATGTAGTTTTCAGACTTCAGAATCTACTAACTCTTAGCTAAAGCATTTGAGCTTATAGGAATTTTACATATAATAAATTATGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285410" ref_strand="+" ref_description="SGN-E285410 [cLER-20-J8]">
      <seq>ttttctcgactttatcaaatgcaacagcactagtagtagcaccccaaacattaccaataagatgaaagatcattttgctggttatagaatgtacaatggctgtaaaggctttagcatatactacaagcttcctggaggtgatggtaaacacgttcgagcaggcaatcttcctgccaactgttcacttatcacattgccgatacgcccgccatcagatgatggtggtttgatcaatatgttaattgctggttttctagtaaaatggaaactgtctgaggactgttacaaatgtcactatcgcggaggtcaatgccagactaatataaccaacagatttcattgtgcatatccaaataagccacatgatcaaggtcatcacgagaataatcaacatgaacaagatgtaaaaacggctagaagaaagttcagactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86559" stop="87679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86859" g_stop="87259" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87260" i_stop="87345" i_length="86">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87346" g_stop="87379" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="435" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E285410" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86859" e_stop="87259"/>
          <exon e_start="87346" e_stop="87379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCGACTTTATCAAATGCAACAGCACTAGTAGTAGCACCCCAAACATTACCAATAAGATGAAAGATCATTTTGCTGGTTATAGAATGTACAATGGCTGTAAAGGCTTTAGCATATACTACAAGCTTCCTGGAGGTGATGGTAAACACGTTCGAGCAGGCAATCTTCCTGCCAACTGTTCACTTATCACATTGCCGATACGCCCGCCATCAGATGATGGTGGTTTGTTCAATATGTTAATTGCTGGTTTTCTAGTAGAATGGAAACTGTCTGAGGACTGTTACAAATGTCACTATCGCGGAGGTCAATGCCAGACTAATATAACCAACAGATTTCATTGTGCATATCCAAATAAGCCACATGATCAAGGTCATCAAGAGAATAATCAACATGAACAAGGTTCAGTCACTTAGTGCATATTTCTTAGTGTCCTTTCTTGTCTTCATATAACATATCAATCATATTTTTCCTATTTTTTTCTTTAGATGTAAAAACGGCTAGAAGAAAGTTCAGACTGAC</genome_strand>
        <mrna_strand>TTTTCTCGACTTTATCAAATGCAACAGCACTAGTAGTAGCACCCCAAACATTACCAATAAGATGAAAGATCATTTTGCTGGTTATAGAATGTACAATGGCTGTAAAGGCTTTAGCATATACTACAAGCTTCCTGGAGGTGATGGTAAACACGTTCGAGCAGGCAATCTTCCTGCCAACTGTTCACTTATCACATTGCCGATACGCCCGCCATCAGATGATGGTGGTTTGATCAATATGTTAATTGCTGGTTTTCTAGTAAAATGGAAACTGTCTGAGGACTGTTACAAATGTCACTATCGCGGAGGTCAATGCCAGACTAATATAACCAACAGATTTCATTGTGCATATCCAAATAAGCCACATGATCAAGGTCATCACGAGAATAATCAACATGAACAAG......................................................................................ATGTAAAAACGGCTAGAAGAAAGTTCAGACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539616" ref_strand="+" ref_description="SGN-E539616 [TUS-59-H13](-)">
      <seq>tttagaagaatggaaacggtctgaggactgttacaaatgacaccaacgaagaggtcaatgccagactaatatagccaacagatttcattgtgcagatccaaataagccacatgatcaaggtcatcttgtggataatcaacatgaacaagaagtaaaaacggctagaagaaagttcagactggcgggggggcccggtacccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86811" stop="87679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87111" g_stop="87259" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87260" i_stop="87345" i_length="86">
            <donor d_prob="0.943" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87346" g_stop="87390" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="194" r_length="45" r_score="0.822"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E539616" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>194</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87111" e_stop="87259"/>
          <exon e_start="87346" e_stop="87390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGTAGAATGGAAACTGTCTGAGGACTGTTACAAATGTCACTATCGCGGAGGTCAATGCCAGACTAATATAACCAACAGATTTCATTGTGCATATCCAAATAAGCCACATGATCAAGGTCATCAAGAGAATAATCAACATGAACAAGGTTCAGTCACTTAGTGCATATTTCTTAGTGTCCTTTCTTGTCTTCATATAACATATCAATCATATTTTTCCTATTTTTTTCTTTAGATGTAAAAACGGCTAGAAGAAAGTTCAGACTGACTCTGGGAGCAG</genome_strand>
        <mrna_strand>TTTAGAAGAATGGAAACGGTCTGAGGACTGTTACAAATGACACCAACGAAGAGGTCAATGCCAGACTAATATAGCCAACAGATTTCATTGTGCAGATCCAAATAAGCCACATGATCAAGGTCATCTTGTGGATAATCAACATGAACAAG......................................................................................AAGTAAAAACGGCTAGAAGAAAGTTCAGACTGGCGGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433205" ref_strand="+" ref_description="SGN-E433205 [STM-58-K19]">
      <seq>ttgaaatgaatattgcttctatttctaaagttcaagtaatccatttccaaagacttagaagttgctgtttttttgcagacttaagaagtcaagtcttaccactggtgtcaatggctaaaggccaatgtaacttaacccaatggcataggaatattatacacaatcagtacacagaagaggttgttgaatcctcgaggtcggagaatgtaaaggggatcatcagagtgacagtggctcctccgtccaacggccccctcgttgtttcgggatcaaaactggtgatacagaaagtgaatgggagaaggttaatagtatccatattaactgtggacatgaacatgcgaggtcccgaaattctagtagaatggaaactgtctgaggaatgtaatgaatgtcattatggtggaggtcaatgccagagtgataaaaccaacaaattttcttgtcacaaagatgcaaaaccacctacaggtagtaccgatcaaagaaaagaaacaactggaagaaatatggtggggcagattctgggaacagtctttggcggagtaggatcggtgatgataacttctttagctgtatacgttatctggcgttacaagaagaggaaatttagttcatcccacttcttctcgacaaggaaattgtcaaatatctttaatcatgatgctgagggaggcagtatatactttggtgtcccagtcttctcttattcagaacttgaagaaccacagatgatttcaattcctctagagtacttggagatggangttatggaactgtttactatggaaaacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88951" stop="97051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89250" g_stop="89384" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89385" i_stop="94784" i_length="5400">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.646" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94785" g_stop="94973" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="314" r_length="188" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94974" i_stop="95378" i_length="405">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.789" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95379" g_stop="95400" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="336" r_length="22" r_score="0.545"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95401" i_stop="95924" i_length="524">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95925" g_stop="96041" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="453" r_length="117" r_score="0.872"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96042" i_stop="96141" i_length="100">
            <donor d_prob="0.981" d_score="0.92"/>
            <acceptor a_prob="0.813" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96142" g_stop="96231" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="534" r_length="81" r_score="0.867"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96232" i_stop="96495" i_length="264">
            <donor d_prob="0.997" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96496" g_stop="96750" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="788" r_length="254" r_score="0.937"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96751" i_stop="96823" i_length="73">
            <donor d_prob="0.581" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96824" g_stop="96833" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="798" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E433205" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89250" e_stop="89384"/>
          <exon e_start="94785" e_stop="94973"/>
          <exon e_start="95379" e_stop="95400"/>
          <exon e_start="95925" e_stop="96041"/>
          <exon e_start="96142" e_stop="96231"/>
          <exon e_start="96496" e_stop="96750"/>
          <exon e_start="96824" e_stop="96833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAATGAATATTGCTTCTATTTCGACAGTTCAAGTCATCCATTTCCAAAGACTTAGAAGTTGCTGTCCTTTTTTTATTTTTGCAGACTTAAGAAGTCAAGTCTTACCCCTGGTGTCAATGGCTAAAGGCCAATGTAAGAATTTCCTTTTCTCTTCAGCTTTTTTTCCCCCAAAAAGTCTGACCCATCGTATACGTTTGGTTCCACATAGTGTTTATTTTTGACAAATTTTACCAGTGAGAAAGACTTGTAATAGTTACGGTGTTGAAAGTTACGAAACTTGATCTTTTAAGAGAGTTCAGGTGAGCTAGCTAGAATTACGATTCACAAACCGTCTAGTCTTTCCTCTTCTTGCAGTGTAGATTCAATATGGCTTTGGCTTATTCTTTTATTTGCTTATGTGGGGATCTTACTGACTTGAGCTTTCCTTTCTCTCTTTCCTCACGATCTGATTGCGGACTAATGATCATGTCTGGTTGTGGTACTAAAACAAATCCAAGAACCCAACTGTTTCCTGGAGGGGATTGCTACAATCTTACGGAAAAAACCACATAATTTTACAGTTTGGCTCTTGGACCCGAAGCTTCATACCATGTTGAGGCAGCACGAGTGCTAGACTTTTAGCAAAAGTTTCTCCCTTCAAAACTCTCCTTTTATTTCTTTCACTACCCCTACGCTTCTGTTGTGCGAAATTTGAGATAATACGAGAAAATATATAAACGCGAAAAACAAGACAACAGATTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGAGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAAAATAGGGTTTGCCATAGCGTCTATATATATATAGTGCTAAGCTACGCCCTAACCTTTCTGTTTGTAACGGGTCCGATTCAAGGCATTCAACAAATCTCCACCTTGACTTGAATTCTCCGAACAGATTCTTCAGACGCACTATGATAGTGCCAGGCCACCCCCTCTTCCTCAGAGTTGCCTCGCAGGGCAATTAACAGCTTCTGATGTTGAGCAAGTCCAAACAGTGTTGAAACTTGCTCTGTGGAACCGGCTTTGTGAACATATCAGCAGGATTATCAGCAGTTCCTACTTTCTTCACCTTGATTCTCTTCTCACTTCTCAGAAAATGATACCTTACGTCAATATGCTTGGTTCTCTCATGATGGACTTGATCCTTGGCTAGACAAATTGCGCTCAAACTGTCACAATACACCGTAGCCTGATCATGATGTAGACCAAGATCACTAACCAGCCCTTTCAACCAAATCCCTTCTTTTGCAGCCTCTGTCAAGGCCATGTACTCCGCTTCCGTAGTAGACAAAGTCACTGTAGGTTGCAAAGTTGCCTTCCAACTGATGACAGATCCTCCAAGGGTAAACACATAGCCAGTCATCGATCTTCTTGTGTCAACATCTCCAGCATAGTCTGAATCAGAATAGCCAGTAACCAAGCACTGAGTATCACCTCCATAAATGAGACCAACGTCAGATGTACCTCTAAGGTACCGGAAAATTCTCTTCACAGCCTGCCAATGTTCTCTCCCTGGTTGTCCCATGAATCTGCTCACTACACTGACTGCATGTGCTAAATCTGGCCTTGTACAGACCATAGCATACATCAAACATACAATTAACATATCACATAATCATATTCACGCTTATCTTATCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCACGCAAACATACAATTAAGCATATAGTAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTACCTCCACCGAAGAATTGGAATCAACAAGCAATCTCCCAGGCTTTGATATTCTTCTTCCTCGTTCGACTCTTTCTCTCTCAATCGATCAATCTATCTCTCACTTTTCTTTTCTCTTTTCTTATTCAAAACCCTCTTTCTTTTACCCCAAATTAACATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTATTAATATAAACCCACGAAATCTATAATTAAGGAAAGAATAGTCCCAAACGTCCCTTAAAACGTGTAAGGAAATCCGATTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAGAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAAATAAAGTCTGCTGCTCAAAACGACTAAACGGGTCGTTACAAAAAATGTTCAAATTAAATTAATATTTATACATTTCAAGAAGATAAAATATTTGACTTTAATTAGTAAAAGATGAAATTCTCCTTCTCATTAAGTAGAATGCAATTAAGTAATTAAAATTTATAAGTAAAAAACTTATTTGAAGGAAATAACTAAGATTTAAAGTGCAATGATTGGTATTTAAATTATGTAATTATACAAATAAAATATTAATATTTAATTAAATAAATCAGATTTTAATTTAATGGAGAGTCAAAATGACAATATTGGTATTCTTACAATTAAAAGTTTGTTAAAATATATTTTACATTTTTTTGTTAAAAAATTAATAGGAGCAATATTTGGTCAAAGGATAAAAGATTTTCTAACTTCTTAAGCATTTTGGTGTATCATTTTTTTGACTTTGGGATTTGGATCTCATAATTTTAATGAAAATTGTCGAAAAACTATAGATTTTATCCACAAGCACATGTAAGAATGATTCTTTACAAATATTTAAAATTTAAAATGCAAAAATATAATTATTAATAATTTGAAATTAGAATATCTTGTAAGCATTAATTGTTCTGCATGTCTTATACACTATTTTTGTGATTGTATTTGTCTCATTTTCTAAAGCAAAAAATATACCCTTCAATCAAATATATTCTTAAAACAACATTACAAATACAAAGAAAAAGTATCATATATAGGAGCAAGTTTAGCATAACGCAACCAACGAAAAATAGAAAAATGCTAAGACAATGTTTTTTCTGTTTTTTCTTGATAATGCAAATAGAAACAAAGTTATAGTAATAAACATTCAACTTTTGACCATAAAAAATTAAAATATTTGGAAGACAAGTTAATGGAAGTGATATTCTACTACATAAATGGAGTGGTCTTACCATAATTCTGATCTCGACAAATAAGTAAAAAAAATACATCAAGCTTCGATATTTTAGTAATTAACATTCATTCCTATAATCACATTATGCCTTGTAATCTTGACACAAATCCTCTTGCCTTGAAATTTTCTTCACTTAATTAAAACTTCTCTAGTCTTTCACACACAAAAATTGTATCACATGTAAATCTTTCTATAAAAATAATATTAAAAGATTGTATTTATAGGGGAAAAAAATAGCTTTGGAATATGAAGATTCACTTACAAAGTTGAAAGGTCAAGTCTTACAAAAGTTAAAGACAAATATTTATTAAGAACATAAATTAATTTAGAAGATAAACCATATACATGTATCTATTTAAAGGGTAAATATTTCAAGAAAATAAAATAAATTAGATATTTTAATTAAGAATTAATTTAAAGAAGTGCAAAAGTCATTAACATTTCTATTAAAATAAATAACTTAATATTTAAATTAAATAATTAAATATTTTTATAACATTTTAATTTATAATAAGGGTAAAATTGTAATTCAACTTTTAGCTTTTTTGGTTCCCTCTTATAATAATACTAGTTTCTGAGGACGTGCTTCGCACGTGTGATTCATGTGAATTTTTATAGATACGTTAGAATGACTAAAATCTCATGGAAATATATATGTAAATTGTAATGAATAATAAAATGTATCAATTACAAAATTCAAAGACTTACGGCAATAAAACATTCATAGAAAACTAAATTAAGAAATCTAAAAGAGTGAAAAAAAGACAAAGAAACAAAATATTTAAGAAAAAATACAATATAGACATTATTCTCATAAGATTGATGTATATATAGATGAAAATATAAGTACAAAATTAGTACATAACTCTCTGAGTTTTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGTTTCATCATCTGTTTTTACTATAGAATAAAAATAATAGCCTAATAATCTTGATAAGGGTTTCATGAGATAAAGAAGTTGAATTTATATAAATAGAATAGGAGGAATATCAAAAGATATCTTAAAATTTTAGTTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAAGTTAAATAAGTAATTAGAAAATAATAATAAATAAATAAAGAATATGGAAAAAAATTAAAGTTAGCAAACCATGTAAAAAGAAAAACTAAAATTCTTTTCATGTAATTAAGCATTAATGAATTTAAATTTTTTGAAGCTAGAGTCATTCTTTAATAATAATCAAGAGAACATTATCAATGTGCGTATCCATTTTGTAGATTTGCACCCTTTAAATTATTAAATTTCGTTATTTATGATAAAGGATAATACTTTATCCACATCAATTATATTATTCATGCGAGGGGTTAAGGAAAAAGTTATAAGAAGAGGAAAAAGAAAAAAAAATTTAGGTAAAGATTTTTGTAAAAAAAATTATAACTATTATATACATATAGATTATAGATGATAATTATTAATAAATTAGATATTTATACAATCAAATATTTAAATATTTTATAATAATTTAATTTATAGAAAGGGTAAAACCGTAATTCAACTTTCAACTTTTTTGTTCATGCTAACTTTTTTGTTCATGCTAAATCATGAGTCGTTTTAGCCGTCAGGGCCAACTGACGTTCACGAAAATTTTTGTCCAAAATAACATCGGAATTCTGAATCACCAAAAAAAGATGGTGAACAATAGCACACGAAATTCAGCAAAATAGGGTACAAACTCTCAATGCCAATGCAGCTAAAAATAATATCAGCTTCTCCTTTCCCTGAATCAGCAGTTATGTTATTGTTGAAACAAGTTAAATCACTGCCTTCTCCAAATTCTGCCGCCGATAAATGGATTACTTGCTTCTGATATAACTAGAACAAAGAAGTTAAAAGTCCTATACCCCATTTCTTTGTTATTGATGTACATTTTGTGACTACAAATGTACTGAGTTTCTTGAGCTGGAAGTCATTCAGTTTGCAGTTTCATTATGTAAGAGTTATCGTTATATACCTTGCAGTGTAAAAGTTTTTATTCTATTTGTGTAATGTTGCAGTATCAGCTTTGTAATTCTCTAGTCGTTGTAGCAGGTTTTGCTACTTTATTTTCAAGCATATCATACATATCTGTTTCAAACAGTTACATTGCAGTTAACTTAACGCAATGGCACAAGAATATTATACACTTTCAGAACACAGAAGAGGTTGTTGAATCCTCGCAGGTCGGAGAATGTAAAGGGGATCACCATAGTGACAATGGCTCCTCCGTAGAAAGGCCCCCGCGTTGTTTCAGGTTCAAAACTGGTGATACAGAAAATGAATGGGAGAAGGTTAATAGTATAGCTTCAATTTCTACAGGTCAAGTCATCAATATTTGGTGGACCTGAAAATGATGAAAAGTTGCTGTTATATTACTGAGTCAAGAAGTCAAGTCTTTCTACTGGAGTCAATTGCTAGAAAAGCTAATGTGAACATTTCCTTTTTTTTTCTTCACCTTTGTTTACTTAATACACATCTGAACCTTCTTATACGTTTGTGTTACACATTTTTCTTTTTTAACAAACATTATCGATAAACTTAAGGCTAGTAATCGAGAAACTGTTCAGGTCTTATAAGATATAGACTTCTAGAGTCACAATTCACAAAGCTTCAGTTAGCGCGTTTTCTTCTTAATTGCAGTTAGATTCAATATGGATCTTGCTTCTTCTTTATTTTGCTTCCTTCTATCTGTTTTTATGATGTTAGTTCAGGCAAATGGAAGAAATGATTCGACTTGTCCAAAGTCGTTTTCATGTGGAAATTTTACTGACCTGAGATTTCCTCTCTCTCTTTCCACACAACCTGAATGTGGAATAATGTTCTTATCTGGTTGTGATGCTAAACCGTATCCGAGAATCCGACTTCTTCCTGAGGGAGATTGGTACTATGCTTTAGAGATGCATAATTCATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGAAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATACTCTCCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACATTACGCAGAAGGAGAACGATCATTTTTCTGGTTATAATATGTACAATGGCTGTGAAGGCTTTAGCATATACTACAACCTTTCCCGACATGATGATGAATACATAGGAGCAGACAATCTTCCTACCAACTGTTCACTTATCAGATTGCCAATTCAGGCAACTCATGGTGATTTGTTCGACGTGTTGGGTCCTGAAATTCTAGTAGAATGGAAGTTATCCGAGGAATGTAACAAATGTCATTATGGTGGAGGTGAATGCCAGGCTAATAAAACCAACAAATTTTCTTGTCACAAAGGTAGACATCTCCAAAATAATCTATATTTTCTAGGTCAAGTTCATGCTTCTGTTTCAAGCCGTGTAAATGATATATTTCGAATTATTGCCTCCTCCTGTAGATGCAAAAACACCTACAGGTAGTATCGATCAAAGAAAAGAAACAACCGAAAGAAATGGAAGAAATATGGTGGGGCCGATTCTGGGAACAGGTAGTAAAATATGTTTAATTGCTGTAATGTATTCTTATTACAGAATATTCATGCATATCATTTAAAATTTCGTCATTTTGGATAAACTGAAATCCTTTCTCTAGCAATAAAGAAACACAAAATGTACGAATGTGGAGTTAAGGGAGAATTCCTCGTATGTAGGAGGAGCTACTGCCTTCCTTCTAATCGGTTCGAAGAGAAAAGGAAACGATGCTATTTCTTTTTGCTTTTCCAAAGACATTGACTTACTAGCTTCTCTTCCAGTCTTTGGCGGAGTAGGATCGGTGATGATAACTTCTTCAGCTGTATACTTTATCTGGCGTTACAAGAAGAGGAGATTTAGTTCATCCCGCTTCTTCTCAACAAGGAAATTATCAGATATCTTTAACCATGATGTTGAGGGAGGCAGTATATACTTTGGTATCCCAGTTTTCTCTTATTCAGAACTTGAAGAGGCCACCGATGATTTCAATTCCTCTAGAGTACTTGGAGATGGAGGTTTTGGAACTGTTTACTATGGTGAGAAACTTCTGAATATGGATATGCATCAACTGTTTCTTCTTGTGGCTAATACTTTTTCATTGATGAACAGGAAAACTTAA</genome_strand>
        <mrna_strand>TTGAAATGAATATTGCTTCTATTTCTAAAGTTCAAGTAATCCATTTCCAAAGACTTAGAAGTTGCTG--------TT-TTTTTGCAGACTTAAGAAGTCAAGTCTTACCACTGGTGTCAATGGCTAAAGGCCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTTAACCCAATGGCATAGGAATATTATACACAATCAGTACACAGAAGAGGTTGTTGAATCCTCG-AGGTCGGAGAATGTAAAGGGGATCATCAGAGTGACAGTGGCTCCTCCGTCCAACGGCCCCCTCGTTGTTTCGGGATCAAAACTGGTGATACAGAAAGTGAATGGGAGAAGGTTAATAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................TCCATATTAACTGTGGACATGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGCGAGGTCCCGAAATTCTAGTAGAATGGAAACTGTCTGAGGAATGTAATGAATGTCATTATGGTGGAGGTCAATGCCAGAGTGATAAAACCAACAAATTTTCTTGTCACAAAG....................................................................................................ATGCAAAACCACCTACAGGTAGTACCGATCAAAGAAAAGAAACAA-C--------TGGAAGAAATATGGTGGGGCAGATTCTGGGAACAG........................................................................................................................................................................................................................................................................TCTTTGGCGGAGTAGGATCGGTGATGATAACTTCTTTAGCTGTATACGTTATCTGGCGTTACAAGAAGAGGAAATTTAGTTCATCCCACTTCTTCTCGACAAGGAAATTGTCAAATATCTTTAATCATGATGCTGAGGGAGGCAGTATATACTTTGGTGTCCCAGTCTTCTCTTATTCAGAACTTGAAGA-ACCACAGATGATTTCAATTCCTCTAGAGTACTTGGAGATGGANGTTATGGAACTGTTTACTATG.........................................................................GAAAACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379696" ref_strand="+" ref_description="SGN-E379696 [TUS-1-K24]">
      <seq>tttaatatggctatcacttcatatgtaagctatctcctatcacttctcctgatcttagttcaggcaaagggcagaaatgattcaacttgtccaaagtcattttcatgtggaaattttactgacctaagctttcctttctctctttctacacaacctgaatgtggaataatgttcttatctggttgtgatgctaaaccatatccgagaatccgactgcttcctgagggatattagtactatgctttagagatgcataatttatcagtttggcttggggacacgaagcttcaaacaacgttgacgcaacacaagtgccaggcttttaacaaaaatttctcccttccatactcttcttttatgtctttccatatgattaatataataagcttctacaaatgcatcagtaccagtaataatacccgtaacattacgcagaagaagaacgatcattttgctggttataatatgtacaccggctgtgaaggctttagcatatactacaacctttcccgacatgatgatgaatacatagcagcagacaatcttcctaccaactgttcacttatcagattgccaattcaggcaactcatggtgatttgttcgacatgttaggtcctgcaattctagtagaatggaaattatctgaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="95043" stop="96271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95379" g_stop="95971" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="651" r_length="593" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E379696" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95379" e_stop="95971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGCAAATGGAAGAAATGATTCGACTTGTCCAAAGTCGTTTTCATGTGGAAATTTTACTGACCTGAGATTTCCTCTCTCTCTTTCCACACAACCTGAATGTGGAATAATGTTCTTATCTGGTTGTGATGCTAAACCGTATCCGAGAATCCGACTTCTTCCTGAGGGAGATTGGTACTATGCTTTAGAGATGCATAATTCATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGAAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATACTCTCCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACATTACGCAGAAGGAGAACGATCATTTTTCTGGTTATAATATGTACAATGGCTGTGAAGGCTTTAGCATATACTACAACCTTTCCCGACATGATGATGAATACATAGGAGCAGACAATCTTCCTACCAACTGTTCACTTATCAGATTGCCAATTCAGGCAACTCATGGTGATTTGTTCGACGTGTTGGGTCCTGAAATTCTAGTAGAATGGAAGTTATCCGAGGAA</genome_strand>
        <mrna_strand>TTCAGGCAAAGGGCAGAAATGATTCAACTTGTCCAAAGTCATTTTCATGTGGAAATTTTACTGACCTAAGCTTTCCTTTCTCTCTTTCTACACAACCTGAATGTGGAATAATGTTCTTATCTGGTTGTGATGCTAAACCATATCCGAGAATCCGACTGCTTCCTGAGGGATATTAGTACTATGCTTTAGAGATGCATAATTTATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGCAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATACTCTTCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACATTACGCAGAAGAAGAACGATCATTTTGCTGGTTATAATATGTACACCGGCTGTGAAGGCTTTAGCATATACTACAACCTTTCCCGACATGATGATGAATACATAGCAGCAGACAATCTTCCTACCAACTGTTCACTTATCAGATTGCCAATTCAGGCAACTCATGGTGATTTGTTCGACATGTTAGGTCCTGCAATTCTAGTAGAATGGAAATTATCTGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315545" ref_strand="+" ref_description="SGN-E315545 [cTOA-22-K11]">
      <seq>gattgtgatgctaaaccatatccgagaatctgactgcttcctgagggagattggtactatgctttacagatgcataattcatcagtttggattggggacacgaagcttcaaacaacgttgacgcaacacaagtgccaggcttttaacaaaaatttctcccttccatgctctccttttatgtctttccatatgattaatataataagcttctacaaatgcatcagtaccagtaataatacccgtaactttacacagatatctttaaccatgatgttgagggaggcagtatatactttggtatctcagttttctcttattcagaacttgaagaggccaccgatgatttcaattcctctagagtacttggagatggaggttatggaactgtttactatggaaaacataaagatgaacaggaaattgctgtaaagcgcctctacgagcacaactgcaagcgaatggagcagtttgtaaacaaagttgatatcctaactagactaaggcacaacaatcttgtcaccctctatggatgcacttcaacgcgaagccgtgaactactccttgtctatgaatatattcctaatggcactcttgctgatcaccttcatcgtaacagagcgaaggacggatcacttacctggccaatccgcatgaacattgccatagaaactgctggtgcattggcttacctgcatgcttctgatgtaatacactgtgatgtcaagactaataacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="95201" stop="97466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95501" g_stop="95755" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95756" i_stop="96609" i_length="854">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96610" g_stop="96750" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="396" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96751" i_stop="96823" i_length="73">
            <donor d_prob="0.581" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96824" g_stop="97166" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="739" r_length="343" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E315545" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95501" e_stop="95755"/>
          <exon e_start="96610" e_stop="96750"/>
          <exon e_start="96824" e_stop="97166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTGATGCTAAACCGTATCCGAGAATCCGACTTCTTCCTGAGGGAGATTGGTACTATGCTTTAGAGATGCATAATTCATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGAAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATACTCTCCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACATTACGCAGAAGGAGAACGATCATTTTTCTGGTTATAATATGTACAATGGCTGTGAAGGCTTTAGCATATACTACAACCTTTCCCGACATGATGATGAATACATAGGAGCAGACAATCTTCCTACCAACTGTTCACTTATCAGATTGCCAATTCAGGCAACTCATGGTGATTTGTTCGACGTGTTGGGTCCTGAAATTCTAGTAGAATGGAAGTTATCCGAGGAATGTAACAAATGTCATTATGGTGGAGGTGAATGCCAGGCTAATAAAACCAACAAATTTTCTTGTCACAAAGGTAGACATCTCCAAAATAATCTATATTTTCTAGGTCAAGTTCATGCTTCTGTTTCAAGCCGTGTAAATGATATATTTCGAATTATTGCCTCCTCCTGTAGATGCAAAAACACCTACAGGTAGTATCGATCAAAGAAAAGAAACAACCGAAAGAAATGGAAGAAATATGGTGGGGCCGATTCTGGGAACAGGTAGTAAAATATGTTTAATTGCTGTAATGTATTCTTATTACAGAATATTCATGCATATCATTTAAAATTTCGTCATTTTGGATAAACTGAAATCCTTTCTCTAGCAATAAAGAAACACAAAATGTACGAATGTGGAGTTAAGGGAGAATTCCTCGTATGTAGGAGGAGCTACTGCCTTCCTTCTAATCGGTTCGAAGAGAAAAGGAAACGATGCTATTTCTTTTTGCTTTTCCAAAGACATTGACTTACTAGCTTCTCTTCCAGTCTTTGGCGGAGTAGGATCGGTGATGATAACTTCTTCAGCTGTATACTTTATCTGGCGTTACAAGAAGAGGAGATTTAGTTCATCCCGCTTCTTCTCAACAAGGAAATTATCAGATATCTTTAACCATGATGTTGAGGGAGGCAGTATATACTTTGGTATCCCAGTTTTCTCTTATTCAGAACTTGAAGAGGCCACCGATGATTTCAATTCCTCTAGAGTACTTGGAGATGGAGGTTTTGGAACTGTTTACTATGGTGAGAAACTTCTGAATATGGATATGCATCAACTGTTTCTTCTTGTGGCTAATACTTTTTCATTGATGAACAGGAAAACTTAAAGATGAACGGGAGATTGCTGTAAAGCGCCTCTACGAGCACAACTGCAAGCGAATGGAGCAGTTTGTAAACGAAGTTGATATCCTTACTAGACTAAGGCACAACAATCTTGTCACCCTCTATGGATGCACTTCAAGGCGAAGCCGTGAACTACTCCTTGTCTATGAATATATTCCTAATGGCACTCTTGCTGATCACCTTCATGGTAACAGAGCGAAGGGCGGATTACTTACCTGGCCAATCCGCATGAACATTGCCATAGAAACTGCTGGTGCATTGGCTTACCTGCATGCTTCTGATGTAATACACTGTGATGTCAAGACTAATAACATACT</genome_strand>
        <mrna_strand>GATTGTGATGCTAAACCATATCCGAGAATCTGACTGCTTCCTGAGGGAGATTGGTACTATGCTTTACAGATGCATAATTCATCAGTTTGGATTGGGGACACGAAGCTTCAAACAACGTTGACGCAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATGCTCTCCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACTTTACACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTTAACCATGATGTTGAGGGAGGCAGTATATACTTTGGTATCTCAGTTTTCTCTTATTCAGAACTTGAAGAGGCCACCGATGATTTCAATTCCTCTAGAGTACTTGGAGATGGAGGTTATGGAACTGTTTACTATG.........................................................................GAAAACATAAAGATGAACAGGAAATTGCTGTAAAGCGCCTCTACGAGCACAACTGCAAGCGAATGGAGCAGTTTGTAAACAAAGTTGATATCCTAACTAGACTAAGGCACAACAATCTTGTCACCCTCTATGGATGCACTTCAACGCGAAGCCGTGAACTACTCCTTGTCTATGAATATATTCCTAATGGCACTCTTGCTGATCACCTTCATCGTAACAGAGCGAAGGACGGATCACTTACCTGGCCAATCCGCATGAACATTGCCATAGAAACTGCTGGTGCATTGGCTTACCTGCATGCTTCTGATGTAATACACTGTGATGTCAAGACTAATAACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433206" ref_strand="+" ref_description="SGN-E433206 [STM-58-K19]">
      <seq>ctattctattgggggcaacttaaacttttattcttcttaaaaattgcatcacttccactcatagtacatagctcaagaaacttctcacagtacgtagtacatttgcagtttacaaaatttttacataaaagtaacaaagaaacggagtatagaaattttaactactttgacaagttatatcagagcaagtagtccatttatcagtcacagaatttggagaaggtagtgatttaactttcttcaacaaaaaaatatcttctgattcagggaaaggaggagctactactgttttagcttcattggcattgagattagtctgaatctcctttagagtattcaaaacttcaaccatagtaggcctcacgtccctatctgtctgcaagcacagaaaagccagctccgccactgaagtagtcatttcccgagttttggtatctgaatcgaaccccagggatggatcaatcaactcattaactgcagattttatgatcttgtttattgcatagttggccaaattgatctcttggctatgcctgttcatatccacagccggcattgatgaaatgagctcaacaaggaccaccccgaagctatagacatcacttttaatggtcagctggtaacattcgtgatactttggatcaatatagcctggggtaccccggggtgtagttgaaatatgagagacatcatttgggaagagccttgaaatcccaaaatccgcaactttaacaccaaagttgtgatcaaggagcatgttattagtcttcacatcgcagtgtattacatcagaagcatgcaggtaagccaatgcaccagcagtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="98179" stop="96792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97899" g_stop="97092" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="827" r_length="811" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E433206" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97899" e_stop="97092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTAAACTTTTATAGAAATTAAAAATTGCATCACTTACACTCATAGTACATAGCTCAAGAAACTTCTCACAGTA-GTA-CA-TTTTGCAGTCTCCCAAA-ATATACATAAAAGTGACAAAGAAACGGATTACAGAAATCTTAACTACTGTGTACAAGTTCTATCAGAGCAAGTATTCCATTCATCAGTCACAGAATTTGAAGAAGGCAGTGATTTAACTTTCTTCAACAAAACAATATCTTTTGATTCAGGGAAAGGAGGAGCAACTACTATTTTAGCTTCATTGGCATTGAGATTAGTCTGAATCTCCTTTAGAGTATCCAAAACTTCAACCATAGTAGGCCTCACGTTCCTATCTGTCTGCAAGCACAGAAAAGCCAGCTCTGCTACTGAAGTAGTCATTTCCCGAGTTTTGGTATCTGAATCGTACCCCAGGGATGGATCAATCAGCTTGTTAACAGCAGATTTTACAATCTTGTTTATTGCATAGTTAGCCAAATTGATCTCTTGGCTATGTCTGTTCATATCCACAGCCGGCATTGATGAAATGAGTTCAACAAGGACCACCCCGAAGCTATAGACATCGCTTTTACTAGTCAGCTGGTAACATTCATGATACTTTGGATCAATATAGCCAGGGGTACCCCGGGGTGTGGTTGAAATATGAGAGACGTCGTTTGGGAAGAGCCTTGAAATCCCAAAATCTGCAACTTTAACACTAAAGTTGTGGTCAAGGAGTATGTTATTAGTCTTGACATCACAGTGTATTACATCAGAAGCATGCAGGTAAGCCAATGCACCAGCAGTTTCT</genome_strand>
        <mrna_strand>AACTTAAACTTTTATTCTTCTTAAAAATTGCATCACTTCCACTCATAGTACATAGCTCAAGAAACTTCTCACAGTACGTAGTACATTTGCAGTTTACAAAATTTTTACATAAAAGTAACAAAGAAACGGAGTATAGAAATTTTAACTACTTTG-ACAAGTTATATCAGAGCAAGTAGTCCATTTATCAGTCACAGAATTTGGAGAAGGTAGTGATTTAACTTTCTTCAACAAAAAAATATCTTCTGATTCAGGGAAAGGAGGAGCTACTACTGTTTTAGCTTCATTGGCATTGAGATTAGTCTGAATCTCCTTTAGAGTATTCAAAACTTCAACCATAGTAGGCCTCACGTCCCTATCTGTCTGCAAGCACAGAAAAGCCAGCTCCGCCACTGAAGTAGTCATTTCCCGAGTTTTGGTATCTGAATCGAACCCCAGGGATGGATCAATCAACTCATTAACTGCAGATTTTATGATCTTGTTTATTGCATAGTTGGCCAAATTGATCTCTTGGCTATGCCTGTTCATATCCACAGCCGGCATTGATGAAATGAGCTCAACAAGGACCACCCCGAAGCTATAGACATCACTTTTAATGGTCAGCTGGTAACATTCGTGATACTTTGGATCAATATAGCCTGGGGTACCCCGGGGTGTAGTTGAAATATGAGAGACATCATTTGGGAAGAGCCTTGAAATCCCAAAATCCGCAACTTTAACACCAAAGTTGTGATCAAGGAGCATGTTATTAGTCTTCACATCGCAGTGTATTACATCAGAAGCATGCAGGTAAGCCAATGCACCAGCAGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203362" ref_strand="+" ref_description="SGN-E203362 [cLEB-3-P3](-)">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="98465" stop="99552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98765" g_stop="99251" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E203362" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98765" e_stop="99251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACTTTTCCAGCCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCTCATATAAAACACACTTTCCTAAACATTTTTGTTTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACTACAAAGCAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTGGAGCTTTTCGTCTAGTTGTTTGGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACTGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCT-CTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409531" ref_strand="+" ref_description="SGN-E409531 [PPI-14-G18]">
      <seq>aggttttggaactgtttactatggaaaacttaaggatggacgagaggttgctgtgaagcgcctttacgagcacaactgcaaacaaatgcagcagtttgtaaatgaaattgagatccttactaggctaaggcacaacaatctagtcaccctctatggttgcacttcaaggcgtagccgtgaactactccttgtctatgaatacattcctaatggaactcttgctgatcaccttcacggtgatagagtgacggtcggatcacttacctggccaatccgcttgaaaattgccatagaaactgctggtgcattggcttaccttcatacttctgacataatacactgtgatgtcaagactaataacatcctccttgatcagaatttcagtgttaaagttgcagattttgggatatcacggctcttcccaaatgacgtttctcatatttcaactgcaccacgggggacccctggctatattgatccaaagtatcaagaatgttatcagctcaccagtaaaagtgatgtcntatagcttcggggtggtccttgttgagctcatttcatcaatgccagctgtggatatgaacaggcatagccaagaaattaatttggctaactttgctataaaccagatcgtaaaagtgcatttcacgagttgatcgacccatccctggggttcgattcagataccaagaatttgggaatgactactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="96428" stop="101239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100152" g_stop="100174" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100175" i_stop="100252" i_length="78">
            <donor d_prob="0.769" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100253" g_stop="100939" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="710" r_length="687" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E409531" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100152" e_stop="100174"/>
          <exon e_start="100253" e_stop="100939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTTGGAACTGTTTACTATGGTGAGGAACTTCCTAATACTACTGAGCTATGCTTCAACTGCTTCTTCACGTACCTAATTCTTGTTCATCAATGATCAGGAAAGCTTAAGGATGGAGGAGAGGTTGCTGTGAAGCGTCTTTACGAGCACAACTGCAAACGAATGCAACAGTTTGTAAATGAAATTGATATCCTTACTAGGCTAAGGCACAACAATCTTGTCACCCTCTATGGTTTCACTTCAAGGCGAAGCCGTGAACTACTCCTTGTCTATGAATACATTCCTAATGGAACTCTTGCTGATCACCTTCATGGTGACAGAGTGAAGGACGGATCACTTACCTGGCCGGTCCGCTTGAAAATTGCCATAGAAACTGCTGGTGCATTGGCTTACCTTCATGCTTCTGACATAATACACTGTGATGTCAAGACTAATAACATACTCCTTGATCAGAATTTCAGTGTTAAAGTTGCAGATTTTGGGATATCACAGCTCTTCTCAAATGATGTTTCTCATATTTCAACTGCAGCTCGGGGGACCCCTGGTTATATCGATCCAAAGTATCAAGAATGTTACCAGCTGACTAGTAAAAGTGATGTC-TATAGCTTCGGGGTGGTCCTTGTTGAGCTCATTTCATCAATGCCATCTGTGGATATGAACAGGCATAGCCAAGAAATTAATTTGGCTAACTTTGCTATAAACAAGATCGCAACATGTGCATTTCACGAGTTGATCGATCCATCCCTGGGGTTCAATTCAGATACCAAGATTAGGGAAATGACAACCT</genome_strand>
        <mrna_strand>AGGTTTTGGAACTGTTTACTATG..............................................................................GAAAACTTAAGGATGGACGAGAGGTTGCTGTGAAGCGCCTTTACGAGCACAACTGCAAACAAATGCAGCAGTTTGTAAATGAAATTGAGATCCTTACTAGGCTAAGGCACAACAATCTAGTCACCCTCTATGGTTGCACTTCAAGGCGTAGCCGTGAACTACTCCTTGTCTATGAATACATTCCTAATGGAACTCTTGCTGATCACCTTCACGGTGATAGAGTGACGGTCGGATCACTTACCTGGCCAATCCGCTTGAAAATTGCCATAGAAACTGCTGGTGCATTGGCTTACCTTCATACTTCTGACATAATACACTGTGATGTCAAGACTAATAACATCCTCCTTGATCAGAATTTCAGTGTTAAAGTTGCAGATTTTGGGATATCACGGCTCTTCCCAAATGACGTTTCTCATATTTCAACTGCACCACGGGGGACCCCTGGCTATATTGATCCAAAGTATCAAGAATGTTATCAGCTCACCAGTAAAAGTGATGTCNTATAGCTTCGGGGTGGTCCTTGTTGAGCTCATTTCATCAATGCCAGCTGTGGATATGAACAGGCATAGCCAAGAAATTAATTTGGCTAACTTTGCTATAAACCAGATCGTAA-AAGTGCATTTCACGAGTTGATCGACCCATCCCTGGGGTTCGATTCAGATACCAAGAATTTGGGAATGACTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212217" ref_strand="+" ref_description="SGN-E212217 [cLEC-75-O19]">
      <seq>tgtccttgttgagctgttatcatccatgcctgcagtagacttcagtagacataacgaagagatcaacttatctaactatgcaataaacaggattttaaggtgtgcatttgatgagttgatagacccatccctcggttttcagtctgatggagaagttaggaggatgactatttcagtagccgagatatcgtttagatgcttgcaacatgacaaggacatgagacctagtatggttgaagtactagaaacattgcaagaaattcagcatggtgagtatatacatgataagaaaatcgattgtgacggaaacacgaaagagagtgtacaagtccctctttcacctgaatcagaagtagatgtattattgaagaaactcaacaacaagtttccaacttcaccaatttcagtaactcaagtgtggattagtgactctagcacaagtatcacaagtacataatattcatctttttttggtttcacagttcatgtagataaacaaaaatacacagaaaactgagccaagtcataacattaactgaatattattgggtacttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="108675" stop="109833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108975" g_stop="109533" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E212217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108975" e_stop="109533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCTTGTTGAGCTGTTATCATCCATGCCTGCAGTAGACTTCAGTAGACATAACGAAGAGATCAACTTATCTAACTATGCAATAAACAGGATTTTAAGGTGTGCATTTGATGAGTTGATAGACCCATCCCTCGGTTTTCAGTCTGATGGAGAAGTTAGGAGGATGACTATTTCAGTAGCCGAGATATCGTTTAGATGCTTGCAACATGACAAGGACATGAGACCTAGTATGGTTGAAGTACTAGAAACATTGCAAGAAATTCAGCATGGTGAGTATATACATGATAAGAAAATCGATTGTGACGGAAACACGAAAGAGAGTGTACAAGTCCCTCTTTCACCTGAATCAGAAGTAGATGTATTATTGAAGAAACTCAACAACAAGTTTCCAACTTCACCAATTTCAGTAACTCAAGTGTGGATTAGTGACTCTAGCACAAGTATCACAAGTACATAATATTCATCTTTTTTTGGTTTCACAGTTCATGTAGATAAACAAAAATACACAGAAAACTGAGCCAAGTCATAACATTAACTGAATATTATTGGGTACTTGTTT</genome_strand>
        <mrna_strand>TGTCCTTGTTGAGCTGTTATCATCCATGCCTGCAGTAGACTTCAGTAGACATAACGAAGAGATCAACTTATCTAACTATGCAATAAACAGGATTTTAAGGTGTGCATTTGATGAGTTGATAGACCCATCCCTCGGTTTTCAGTCTGATGGAGAAGTTAGGAGGATGACTATTTCAGTAGCCGAGATATCGTTTAGATGCTTGCAACATGACAAGGACATGAGACCTAGTATGGTTGAAGTACTAGAAACATTGCAAGAAATTCAGCATGGTGAGTATATACATGATAAGAAAATCGATTGTGACGGAAACACGAAAGAGAGTGTACAAGTCCCTCTTTCACCTGAATCAGAAGTAGATGTATTATTGAAGAAACTCAACAACAAGTTTCCAACTTCACCAATTTCAGTAACTCAAGTGTGGATTAGTGACTCTAGCACAAGTATCACAAGTACATAATATTCATCTTTTTTTGGTTTCACAGTTCATGTAGATAAACAAAAATACACAGAAAACTGAGCCAAGTCATAACATTAACTGAATATTATTGGGTACTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204553" ref_strand="+" ref_description="SGN-E204553 [cLEC-24-A6]">
      <seq>tattccctccgtttcaatttgtttatctagttttgactaggcacggagtttagaaagtaaaaaaagactttcgaatctcgtggtgttagaatgtaccaaatgttctttgatcttgtggtcttaaacatatcatgtgaaacggactaaaaagggaaagatgcattctttctgaaacggactaaaaagggaagtaagtcgaacaaattgaaacgagggagtaataatctaaagacaatccacaaaagtctgttctgtttgttttgattttcgaggggaaatttacgtagtaagcatcttgatctaacagctatttctgtatgttctaaaatcaggaaaacttaaagatggaaaagaagttgcagttaagagtctttatgagaacaatcacaggcaaatgcagcagtttatcaacgaaattgaaattctcactcgccttaggcatccgaatcttgtaaccctttatggatgtacatcaagacgtagccgtgaactcttccttgtttatgagtacattcctaatggaacaattgctgatcacctgtacggacatagagcgaaggataagttactaacatggtctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="112721" stop="113903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113021" g_stop="113603" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E204553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113021" e_stop="113603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCCCTCCGTTTCAATTTGTTTATCTAGTTTTGACTAGGCACGGAGTTTAGAAAGTAAAAAAAGACTTTCGAATCTCGTGGTGTTAGAATGTACCAAATGTTCTTTGATCTTGTGGTCTTAAACATATCATGTGAAACGGACTAAAAAGGGAAAGATGCATTCTTTCTGAAACGGACTAAAAAGGGAAGTAAGTCGAACAAATTGAAACGAGGGAGTAATAATCTAAAGACAATCCACAAAAGTCTGTTCTGTTTGTTTTGATTTTCGAGGGGAAATTTACGTAGTAAGCATCTTGATCTAACAGCTATTTCTGTATGTTCTAAAATCAGGAAAACTTAAAGATGGAAAAGAAGTTGCAGTTAAGAGTCTTTATGAGAACAATCACAGGCAAATGCAGCAGTTTATCAACGAAATTGAAATTCTCACTCGCCTTAGGCATCCGAATCTTGTAACCCTTTATGGATGTACATCAAGACGTAGCCGTGAACTCTTCCTTGTTTATGAGTACATTCCTAATGGAACAATTGCTGATCACCTGTACGGACATAGAGCGAAGGATAAGTTACTAACATGGTCTATA</genome_strand>
        <mrna_strand>TATTCCCTCCGTTTCAATTTGTTTATCTAGTTTTGACTAGGCACGGAGTTTAGAAAGTAAAAAAAGACTTTCGAATCTCGTGGTGTTAGAATGTACCAAATGTTCTTTGATCTTGTGGTCTTAAACATATCATGTGAAACGGACTAAAAAGGGAAAGATGCATTCTTTCTGAAACGGACTAAAAAGGGAAGTAAGTCGAACAAATTGAAACGAGGGAGTAATAATCTAAAGACAATCCACAAAAGTCTGTTCTGTTTGTTTTGATTTTCGAGGGGAAATTTACGTAGTAAGCATCTTGATCTAACAGCTATTTCTGTATGTTCTAAAATCAGGAAAACTTAAAGATGGAAAAGAAGTTGCAGTTAAGAGTCTTTATGAGAACAATCACAGGCAAATGCAGCAGTTTATCAACGAAATTGAAATTCTCACTCGCCTTAGGCATCCGAATCTTGTAACCCTTTATGGATGTACATCAAGACGTAGCCGTGAACTCTTCCTTGTTTATGAGTACATTCCTAATGGAACAATTGCTGATCACCTGTACGGACATAGAGCGAAGGATAAGTTACTAACATGGTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404768" ref_strand="+" ref_description="SGN-E404768 [PPC-15-A16]">
      <seq>aggtgaactcttccttgtttatgagtacattcctaatggaacaattgctgatcacctgaacggacatagagcgaaagataagttactaacatggtctataaagctcaaaatcgccattgaaactgctagcgcgttggcttaccttcatgcttctgacatcatacaccgtgatgtcaaaacaaataacattctcctggacaataagttttgtgtcaaagtagcagatttcgggctgtcaaaatccttccctaatgatgttactcatatctcaaccgcacctcaggggaccccaggatatgttgatcctcagtatcatgaatgttaccaccttactgataagagtgatgtttatagctttggggttgtccttgttgagctcatatcatcaaagcaagctgtagatatgaacagacatatgcacgagattaatttggcaaactacgcgatgaacaggatactaaaatccgcatttgatgaagtgattgatccatctcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="113206" stop="114302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113504" g_stop="114002" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E404768" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113504" e_stop="114002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGAACTCTTCCTTGTTTATGAGTACATTCCTAATGGAACAATTGCTGATCACCTGTACGGACATAGAGCGAAGGATAAGTTACTAACATGGTCTATAAGGCTCAAAATCGCCATTGAAACTGCTAGCGCTTTGGCTTACCTTCATGCTTCTGACATCATACACCGTGATGTCAAAACAAATAACATTCTCCTGGACAATAAGTTTTGTGTCAAAGTAGCAGATTTCGGGCTGTCAAAATCCTTCCCTAACGATGTCACTCATATCTCAACCGCACCTCAGGGGACCCCGGGATATGTTGATCCTCAGTATCACGAATGTTACCAGCTTACTGATAAGAGTGATGTTTATAGCTTTGGGGTTGTCCTTGTTGAGCTCCTATCATCAAAGCGAGCTGTAGATATGAACAGACATATGCACGAGATTAATTTGGCAAACTACGCGATGAACAGGATACTAAAATCTGCATTTGATGAGGTGATTGATCCATCACTTGGA</genome_strand>
        <mrna_strand>AGGTGAACTCTTCCTTGTTTATGAGTACATTCCTAATGGAACAATTGCTGATCACCTGAACGGACATAGAGCGAAAGATAAGTTACTAACATGGTCTATAAAGCTCAAAATCGCCATTGAAACTGCTAGCGCGTTGGCTTACCTTCATGCTTCTGACATCATACACCGTGATGTCAAAACAAATAACATTCTCCTGGACAATAAGTTTTGTGTCAAAGTAGCAGATTTCGGGCTGTCAAAATCCTTCCCTAATGATGTTACTCATATCTCAACCGCACCTCAGGGGACCCCAGGATATGTTGATCCTCAGTATCATGAATGTTACCACCTTACTGATAAGAGTGATGTTTATAGCTTTGGGGTTGTCCTTGTTGAGCTCATATCATCAAAGCAAGCTGTAGATATGAACAGACATATGCACGAGATTAATTTGGCAAACTACGCGATGAACAGGATACTAAAATCCGCATTTGATGAAGTGATTGATCCATCTCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434062" ref_strand="+" ref_description="SGN-E434062 [STM-59-K16]">
      <seq>gtgaactcttccttgtttatgagtacattcctaatggaacaattgctgatcacctgaacggacatagagcgaaggataagttactaacatggtctataaggctcaaaatcgccattgaaactgctagcgcgttggcttaccttcatgcttctgacatcatacaccgtgatgtcaaaacaaataacattctcctggacaataagttttgtgtcaaagtagcagatttcgggctgtcaaaatccttccctaatgatgttactcatatctcaaccgcacctcaggggaccccaggatatgttgatcctcagtatcatgaatgttaccaccttactgataagagtgatgtttatagctttggggttgtccttgttgagctcatatcatcaaagcaagctgtagatatgaacagacatatgcacgagattaatttggcaaactacgcgatgaacaggatactaaaatccgcatttgatgaggtgattgatccatctcttggattcgagacagatgctgaagttaggaggatgacaacatcagtggcagaactagctttccagtgcttgcaagttgtcaaggacatgagacctacaatggaagaagtacacgatgcgttgaagcttatcaaatacagtgaatggaaaaattatcagaaaaaggatatcaatagctgcaataccaagacaagaactgtaaaagttcatcgtcatccttctgaaacggatgatgctgtgttattgaaagaaaacattccagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="113206" stop="114561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113506" g_stop="114261" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E434062" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113506" e_stop="114261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACTCTTCCTTGTTTATGAGTACATTCCTAATGGAACAATTGCTGATCACCTGTACGGACATAGAGCGAAGGATAAGTTACTAACATGGTCTATAAGGCTCAAAATCGCCATTGAAACTGCTAGCGCTTTGGCTTACCTTCATGCTTCTGACATCATACACCGTGATGTCAAAACAAATAACATTCTCCTGGACAATAAGTTTTGTGTCAAAGTAGCAGATTTCGGGCTGTCAAAATCCTTCCCTAACGATGTCACTCATATCTCAACCGCACCTCAGGGGACCCCGGGATATGTTGATCCTCAGTATCACGAATGTTACCAGCTTACTGATAAGAGTGATGTTTATAGCTTTGGGGTTGTCCTTGTTGAGCTCCTATCATCAAAGCGAGCTGTAGATATGAACAGACATATGCACGAGATTAATTTGGCAAACTACGCGATGAACAGGATACTAAAATCTGCATTTGATGAGGTGATTGATCCATCACTTGGATTCGAGACAGATGCTGAAGTCAGGAGGATGACAATATCAGTAGCAGAACTAGCTTTCCAGTGCTTGCAAGTTGTCAAGGACATGAGACCTACAATGGAAGAAGTACACGAAACGTTGAAGCTTATCAAATACAGTGAATGGAAAAATTATCAGAAAAAGGATATCAATAGCTGCAATACCAAGACAACAACTGTAAAAGTTCATCGTTATCCTTCTGAAACGGATGATGCTGTGTTATTGAAGAAAAACACTCCAGCTT</genome_strand>
        <mrna_strand>GTGAACTCTTCCTTGTTTATGAGTACATTCCTAATGGAACAATTGCTGATCACCTGAACGGACATAGAGCGAAGGATAAGTTACTAACATGGTCTATAAGGCTCAAAATCGCCATTGAAACTGCTAGCGCGTTGGCTTACCTTCATGCTTCTGACATCATACACCGTGATGTCAAAACAAATAACATTCTCCTGGACAATAAGTTTTGTGTCAAAGTAGCAGATTTCGGGCTGTCAAAATCCTTCCCTAATGATGTTACTCATATCTCAACCGCACCTCAGGGGACCCCAGGATATGTTGATCCTCAGTATCATGAATGTTACCACCTTACTGATAAGAGTGATGTTTATAGCTTTGGGGTTGTCCTTGTTGAGCTCATATCATCAAAGCAAGCTGTAGATATGAACAGACATATGCACGAGATTAATTTGGCAAACTACGCGATGAACAGGATACTAAAATCCGCATTTGATGAGGTGATTGATCCATCTCTTGGATTCGAGACAGATGCTGAAGTTAGGAGGATGACAACATCAGTGGCAGAACTAGCTTTCCAGTGCTTGCAAGTTGTCAAGGACATGAGACCTACAATGGAAGAAGTACACGATGCGTTGAAGCTTATCAAATACAGTGAATGGAAAAATTATCAGAAAAAGGATATCAATAGCTGCAATACCAAGACAAGAACTGTAAAAGTTCATCGTCATCCTTCTGAAACGGATGATGCTGTGTTATTGAAAGAAAACATTCCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434063" ref_strand="-" ref_description="SGN-E434063 [STM-59-K16]">
      <seq>ctcatatcatcaaagcaagctgtagatatgaacagacatatgcacgagattaatttggcaaactacgcgatgaacaggatactaaaatccgcatttgatgaggtgattgatccatctcttggattcgagacagatgctgaagttaggaggatgacaacatcagtggcagaactagctttccagtgcttgcaagttgtcaaggacatgagacctacaatggaagaagtacacgatgcgttgaagcttatcaaatacagtgaatggaaaaattatcagaaaaaggatatcaatagctgcaataccaagacaagaactgtaaaagttcatcgtcatccttctgaaacggatgatgctgtgttattgaagaaaaacattccagcttcacctgatactgtgattgatacatgggctagtagttccactacaactagtactggagggtgatatttcataaactcatttttcccctttatgttagatacatatcatgatatcatttttatagagtttttttagcttgtttcagcctgttcatgaatatagtagatgaagctttcttaaagtgttagttatagtcacatatgtatatgattcccctttagactatgttgctcggattctcctaaaatgttgttgcacgtgtgtctgatcctccaaaaatgcactacttctagaggatccgcacacacttgtgagcatttttgaaaattttctggatagattatcctggctttaaataaaaaaaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="113580" stop="114915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113880" g_stop="114612" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="735" polyA_stop="745"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E434063" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434063" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113880" e_stop="114612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTATCATCAAAGCGAGCTGTAGATATGAACAGACATATGCACGAGATTAATTTGGCAAACTACGCGATGAACAGGATACTAAAATCTGCATTTGATGAGGTGATTGATCCATCACTTGGATTCGAGACAGATGCTGAAGTCAGGAGGATGACAATATCAGTAGCAGAACTAGCTTTCCAGTGCTTGCAAGTTGTCAAGGACATGAGACCTACAATGGAAGAAGTACACGAAACGTTGAAGCTTATCAAATACAGTGAATGGAAAAATTATCAGAAAAAGGATATCAATAGCTGCAATACCAAGACAACAACTGTAAAAGTTCATCGTTATCCTTCTGAAACGGATGATGCTGTGTTATTGAAGAAAAACACTCCAGCTTCACCTGATACTGTGATTGATACATGGGCTAGCAGTTCCACTACAACTAGTACTGGAGGGTGATGTTTCATAAACTCATTTTCCCCCTTCATTTTAAATACATATCATGATGTCATTTTTATAGAGTTTTTTCAGCTTGTTTCAGCCTGTTCAGGAATATAGTAAATGAAGCTTTCTTAAAGTGTTAGTTATAGTCACATATGTATATGATTCCCCTTTAGACTATGTTGCTCGGATTCCCCTAAAGTGTTGCTGCACGTGTGTCTGATCCTCCAAAAATGCACTACTTTTGGAGGATCCGTACACACCTGTGAGCATTTTTGAAAATTTTCTCTATGGGTTATCCTGGCTT</genome_strand>
        <mrna_strand>CTCATATCATCAAAGCAAGCTGTAGATATGAACAGACATATGCACGAGATTAATTTGGCAAACTACGCGATGAACAGGATACTAAAATCCGCATTTGATGAGGTGATTGATCCATCTCTTGGATTCGAGACAGATGCTGAAGTTAGGAGGATGACAACATCAGTGGCAGAACTAGCTTTCCAGTGCTTGCAAGTTGTCAAGGACATGAGACCTACAATGGAAGAAGTACACGATGCGTTGAAGCTTATCAAATACAGTGAATGGAAAAATTATCAGAAAAAGGATATCAATAGCTGCAATACCAAGACAAGAACTGTAAAAGTTCATCGTCATCCTTCTGAAACGGATGATGCTGTGTTATTGAAGAAAAACATTCCAGCTTCACCTGATACTGTGATTGATACATGGGCTAGTAGTTCCACTACAACTAGTACTGGAGGGTGATATTTCATAAACTCATTTTTCCCCTTTATGTTAGATACATATCATGATATCATTTTTATAGAGTTTTTTTAGCTTGTTTCAGCCTGTTCATGAATATAGTAGATGAAGCTTTCTTAAAGTGTTAGTTATAGTCACATATGTATATGATTCCCCTTTAGACTATGTTGCTCGGATTCTCCTAAAATGTTGTTGCACGTGTGTCTGATCCTCCAAAAATGCACTACTTCTAGAGGATCCGCACACACTTGTGAGCATTTTTGAAAATTTTCTGGATAGATTATCCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544433" ref_strand="+" ref_description="SGN-E544433 [TUS-66-M6](-)">
      <seq>gggcaagtaagaaactcagagaaagcatataatggggttgtcgattgtgtaaaaaagatgttcaaacaggaacgtctgactgcattctaccggggttgtggaaccaatcttctaaggaccacaccctctgctgttattacatttaccagttatgaaatgatccacaaaatacttcaacgagctatacttccagaaaaggattcagaaccaaatcctagacgtaaatcccataaggtagccgaagaacatggagacaatgatgaaaaattacaacaatcagaaagcacatcaaataagagaactcctttaattccattgagtaactctgataatctaactgctagacattgattagagatgtttctctttttctttttttttttttttgtcgtggaagcaatttgcaacaagtgtttgctgttgcacaattttttttattttgtatcttactattttgggtgaagaaagttttatatttcgatctaataaagaagggcgcggatagtttccctctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="115964" stop="114849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115664" g_stop="115149" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115148" i_stop="114988" i_length="161">
            <donor d_prob="0.233" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114987" g_stop="114977" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="527" r_length="11" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E544433" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115664" e_stop="115149"/>
          <exon e_start="114987" e_stop="114977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAAGTAAGAAACTCAGAGAAAGCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGAGTCTGAATTCTTCATCATCTTTGATTATTTGTTCTACTGAGTGGGATTACGTTGGATATGTTGTTCTTCTTCCTTTTTTTCACCTTGGAAAATGATTGGCTAATTCTTGATTATTGACCCATTCTTGAATTGCAATTTCTAAATAAATGATTTGTCTGTAGACAATTAATTA</genome_strand>
        <mrna_strand>GGGCAAGTAAGAAACTCAGAGAAAGCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA.................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745103" ref_strand="+" ref_description="SGN-E745103 [GI|47106025]">
      <seq>gaactcgtccaagacgtcagtggaccggtcattcttcttgaaaacccaaaagggtatttgtatatgatgaaaccccacctgggtttttgctaaatcttcaaagggttctttaaattcttgaaaaaagagtgattttttcagttttttttcaatatttttgctgttgtttgggttgttgaggtaaagttttccggcaagaatgaccaccgccggcgccggcgaccttaagagtgttagaggtatcatatgtgaagttggtgctggtgcttctgcaggtgccattgctgctacatttatgtgtccattggatgttattaagacaagactgcaagtacatggtctgcctcaggtttctcaatctgctcgtcaaggtagtgtcattgtcacaagcttacagaatatactaagaacagaaggtttcaggggactttatcgaggcctttcaccaacattgacagctcttcttccgaactgggcggtgtacttcacagtttatgaacatctcaaggattcgttgcattcacatgtggatagcagtgggcagcttacgattggtgcaaacatgcttgcagctgcgggggcgggggctgcaacatccattacaacaaatccattgtgggttgttaagacccggctcatgacacagggaatgagggagggtgtagttccttataaaggtatattgtctgctttaatacgaataacacatgaagaagggatccgcggattgtacagtggcctcttgccgtcattggctgggattagtcatgttgctatccaatttccagcatatgaaaagctgaaatcgtacttggcaaaaagggccaataagcataccaatgaactaaactctggtgaagtagcaattgcctcttcgatggcaaaaatacttgcctctgtaatgacttatccacatgaggtcgttcgttctaaacttcaagaacaagggcaagtaagaaactcagagaaagcatataatggggttgtcgattgtgtaaaaaagatgttcaaacaggaacgtctgactgcattctaccggggttgtggaaccaatcttctaaggaccacaccctctgctgttattacatttaccagttatgaaatgatccacaaaatacttcaacgagctatacttccagaaaaggattcagaaccaaatcctagacgtaaatcccataaggtagccgaagaacatggagacaatgatgaaaaattacaacaatcagaaagcacatcaaataagagaactcctttaattccattgagtaactctgataatctaactgctagacattgattagagatgtttctctttttcttttttttttttttttttgtcgtggaagcaatttgcaacaagtgtttgctgttgcacaattttttttattttgtatcttactattttgggtgaagaaagttttatatttcgatctaataaagaagggcgcggatagtttccctctgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="121763" stop="114849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121464" g_stop="121190" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121189" i_stop="120684" i_length="506">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120683" g_stop="120588" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="371" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120587" i_stop="119206" i_length="1382">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119205" g_stop="119099" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="478" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119098" i_stop="118640" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118639" g_stop="118591" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="527" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118590" i_stop="118416" i_length="175">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118415" g_stop="118303" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="640" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118302" i_stop="116386" i_length="1917">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116385" g_stop="116291" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="735" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="116290" i_stop="116050" i_length="241">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="116049" g_stop="115961" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="824" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="115960" i_stop="115868" i_length="93">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="115867" g_stop="115773" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="919" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="115772" i_stop="115692" i_length="81">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="115691" g_stop="115149" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="920" r_stop="1465" r_length="546" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1466" polyA_stop="1479"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E745103" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1462</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121464" e_stop="121190"/>
          <exon e_start="120683" e_stop="120588"/>
          <exon e_start="119205" e_stop="119099"/>
          <exon e_start="118639" e_stop="118591"/>
          <exon e_start="118415" e_stop="118303"/>
          <exon e_start="116385" e_stop="116291"/>
          <exon e_start="116049" e_stop="115961"/>
          <exon e_start="115867" e_stop="115773"/>
          <exon e_start="115691" e_stop="115149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCGTCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAGGTATGTACTGGACTCCTTTTTTTTCCTTTTGAATTTAATTTGTCAATTGTTGTTATCTGGGGTTTTAATGTTAGAGAAGGTAAATGGTTTTGTTTTTTGATCTTTGAGTTTTTTGAGCTATTTGAATGTGATTTTTAGTTAATTGGGGGTTGTAAAAATCATTGCTTTTGTATATTTGGGTAGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTTTTCAGCTGTTTGAATGTGAATTTGAGTTAATTGGGGGGTGCGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTCTTTGAGCTGTTTGAATGTGAATTTGAGTTAATCGGAGATTTTTTAGGTGCTATTGCTGCTGTATTTGTGTGTAAATTGGATCTTTGAGGTTTTTGAGCTATTTGAATGTGAATTGAGTTGATTGGGGGTTGTAAAAATCTAAGCTTTTGTATCTTTTGATGTTCTTAAGGTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAGGTTTGTGCTCGTCGTTGTCTCTTATATTAGAAATGATAAGAACTGCTACCTTAAGTCGAATTGCTTCCTTCCGATTGAACAAATGCAAAAATGATATATTAAGATTAATGTGATCTTCTAATTGAATTATTTCATAGCTCTAGTAATGATCTGTAGATCCCTTATAACACGTCGATGGTGTCCTATATATAACAGATAAGAACACTTCTTGTTCACAACTTAACAACCATGAGAATTTCTATTTGCCTTTTGTGTGAACAAAACACCACTCAGATCAACATATCTAAAAAATGGACTGCGAATCATTAATGCTTATCCGATCAAACGAAGCATAAATGACAGACCTGAGTTTTCCTCATTTTCAACGATAATTCATTTCAGGTCCTGCTCCTCACTACTAGTTGACTTGGATTTAAGACAGATTGTCAAAATCTAGCGATAACTTTTACCCTGATTTTACAACAGAACAATGGATTCTATGTTTTTCCAGTTATAGCATATCTCTGGTAAAAGAAGTCCGGCTGTTGCTTTGAATTCTTACCAATCTTCTCAGGCAAAGTAGAAGTATTAGCTTTTATTGACTGCCCCTTATAATTTTTACTTATCTTTGTGTTCTTCTAGATTCTTAAGTAAGGTATTTGTTAGCATAAAAATAGGGGTGCTGTACAGTTGCATTATACATTACCTTATCCAAACAAATATGTGACTACGAAAACATATATCCAACCAATATACCCAGGTTGGATCTTTTTTGAGCTCCAACATAGCAACAAAAGAATATGCATTCTGGATTTAGGAATTTTCTTGTCTTGGATGCTTAATTATTTCACACAAAGCTGTACCTTAGTGCATGAAGAGCTATTTTGTTGTATTTTTTCTGTCTTCATGTTCCTTCAGCTTTCACTCAGATAGGCTGCCCATAGGGCTTCTGTTTCCTCCAATTTCCATTTTCTCCAGTGTAGGATGTCCAACATGTTGCTTTTGGTGCTTTTCCTTGTATTTCTGCTTTCCATATTTGATGTAGTCATTTTCTAAATGGACTTCCACATTCTGTACATTGTGCACTCTAAGCTCATCGCATCTTTGTGGGAAATTTCCTTTGGCAGTGAGTATAATTTGGTGATTTAGAGCAGAGTTGCTGTCGACTTTTTCATGAAGGTCTCTAGGGCTAGTTATATTTTCTTCTTATTTGAACAAGTGTTAATTTGAGGAGCTGATAATTGGGCTTTCATCTTGTTCCTTCTTTGGATGAATATACTTTTTTTTGGTCTTCTGTTGAACCTATTTAGATGGTAACCATAGAAAAAGAGGCAAAGACAAAAAAGAAGTCCGAATCCATATTACTGCCACACTTATTTTTCCTTGAATTATTTGGGCAACAGGTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCGGTAAGCATTGTCTTGTTCAATTTCTATTTCTGTGGATTGCAATTAGTTGAACTTCCTTCATGAAATGAATCATCAAAATTGAATGAGATAAATATTCAGATATGGTCTCTTATGGAACTGCATCCTTTCTTATTGAATAATGCAATGATTAGGGTTACCTTGCACACCACCACAAACATGTTCTTATTGCTGATGAAGAATAAAAATGAATAAGGCTTTCCTTTTGGGCGGGGGCAGGTGTTGCTGTATTGAACTCCTGGATAGCTTTTTAATCATTTAATGGAAATTAAAAGTTGATTTACCAGTGTTAGCTGTAATCTTATCGGCTTTGTTTACAACTGACTCCATGTTGGCATATATTTTCTGTGCATGCTGAATGCTGAATCCACCCACCCTTTTTTCTTCTGAATTTCCACATAAGTAACTGTTTTGAGAAAAAAACATTCACATCTTCTGCAGGTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATGGTAAACTTTTACTCTATTAGTTTTCTGGACTAATAGCTTCCATCACTTCTTTTTTAAATGTTTGTTTGAATGCCATCATATTTTTTAATCCTTTACTATTGGAAGTTGTGATGAAGACAATAGGAAACTTAGCACTTAGCTTTACCAAAAGAATTTTCTTGCGCGTTAAATGCAGTGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATGGTAGGTCTCTCTCATATAGTTAGCGTAGATTTATTCTTCTGTGCGCACTTTATTGTACCTTAAAATGCATAAATGCTCAGAAATTTAATAGAATACCAATTTGATTAAGTTGGCTTCCTTCAATTTGGGTAATTGGTGTTGTTGGTAGGGAGCCATGATCCATGCACTTCCATTTTTCTATATATTTCCTTGCCCTGCTCTAGTTTCTGCAGTCTTTATCACTGTTCTATTACGTATCCATGTATGCTTTCCTTCATCAACTATGATCCGAGAGAAGAATGGGAATAGGTGAAATGCAATCCTTTACCTCGTGAGGGCTTAAATGTGGAGTATCAAAAGTTTCTTTTATGTTGGTGGCATCCGAGTTAGCTTGTGTGTAACTCGACTGTTTTACCGGGTACATGCTATCTCCCACCAGCACAGGTATCATGTAGCTCTGCCAACTAGGCCAGTAGGCCTAGTCACCTAGACAGATGAAAAGAGATCACCTAGTCTTTCTTTCCTCTGTTGGTATTGGAGTATTAGAGTGATACATCTGGAAAATTGAAACCAAGACTAGCTGTCTGTATGTAAGCCTGTTGATATAGTTAGGATTATGCTGCTCTATAGCTAGTGAAAGAAAAATTCCTCTGATTTTTCTGTCCTCCCCCTTATCAAAAAGGAGTTTCTCATGTGCATATTCAGCATGTTCACTTTTCTATCATGATTTCTTAATAGAGAGAAGAATGCAGATTCCACACAGTTTAGAAATCCTGAGATATGCATTAACCCCTCCAACCGAAGCATGGATAGTAGAAAAGTTGACTTGGGGCATTTGACTGGAATCACATGCAATAAGCAAGCATAGGGGAGAGAAATTCTAAAATTTTATGAGGGTAGGTAAACATGTCATGGACATTTTCAGAATTCCCATGCTTTTTTTTTTCTCTTCTAAAGGGAGAAGTCTCTTGTGAGTTAGTTGATCCAGTCCAGTTGAGGCCCTGGTCTGAAACTCGAGGAAGCATGGGCCTGCCCCCCTCTACCCTCCTCCTCCTCTCACTTATATGTTAGGCTTTAGTTCTTCGCAGGTTCAATCTTGTTACCCAATTACGCATCCTGTGTTGTGGTTCTTTTGTTGTTGAATCAAAACATTGGGGCAAGAGTTCCCTTGTGTTTCAGATATACCTTTGTTGTAGTAAAGGATATATCATCTTGTTGTATTCCTTTTTTAATTATTTCTAGCACATTTCGTGCTATATATATAATAGTTACCTTCTTTCAGAAAAGGATATACACATCTTGTGGATAGTTGATTTGAGTTTGTGAACATTTGATATAGATCCATACCTGGATAGCTACAACATGTAGGTGAATTATCAATGAAACGCTTCAACTTATCAAAAAAATGTTCTTGTTGGATAATTGGTGTCTGGTGCAACTGCAGCTTGCCGTATTTCCAGCAACTGAAATTGGTGTAACAACAGTAAATAGTTCTAATTAGTATAATTGGAGATGCTTCTTCACTAAAATGAATCAGAATCTAAACTTACGTGTATCAATTTAGTCATGTTCACGTTTTCTTTAGATTCAATATTTGCTAAGAGTCTTTGTCTTCTAAGAGATTTATATTCCGGGAAAATATGTTGATAATTTGCTGCCAGAGAATCTATTTTGTAAGGATTCTCATAGCTGATCCCAATTTGTTCGGAATTGAGGCATAATTGTAGTACCCATTGTTGTAAGCATCTGCAGATGGTGCCAATACAGTTGTCGTCCTAGTGCAACATAAGCGTGTTAAGTTCACGTAACATAGGCGAAAGCACAAGTTTCTAATACCATTAGAGTTTATTGTTAGGGTGTCCTTAATTACTATTGGAATAATAACTTGCATTTGCTTACGTAGCGTGTTCCTGATATTTTCTTTTCCTCATTCTTTAGACACAGGGAATGAGGGAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCGCGGATTGTACAGGTTAGTTATATAGCGAAGATAGTTATATACAAACTTTTTACGTATGTGTGTTTCATCCTTTGTAGAGACGCTTCAGTTCCATACCCTCTTAACCAACTATGCGAAGATGGAAAACATCTTCATAGGATAATAAGCAATTACTCGTCCAAAAAAAAGAAAAAACAATATCCATTTTCATCACCTGATGTTGACTCTAGTTAGTTATTTTGGGTTTGATATCTCCGTTTGCTTTGGGTTGCAGTGGCCTCTTGCCGTCATTGGCTGGGATTAGTCATGTTGCTATCCAATTTCCAGCATATGAAAAGCTGAAATCGTACTTGGCAAAAAGGGGTGAGAAGCTTTTCTCTTTTATCAGTTGCGGAAGTTTGTTTCTCATTTATCTCTTATCTGATTGATCACGTGATGTCTTTCTTGAACTGCCAGCCAATAAGCATACCAATGAACTAAACTCTGGTGAAGTAGCAATTGCCTCTTCGATGGCAAAAATACTTGCCTCTGTAATGACTTATCCACATGAGGTAAGCAGGAAATGGACCAAGACCATCTTTGTTCTTTCCTGGAAACACAGTCCTACTTATTTATCTATCGTTCTTGACCAGGTCGTTCGTTCTAAACTTCAAGAACAAGGGCAAGTAAGAAACTCAGAGAAAGCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTC---TTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA</genome_strand>
        <mrna_strand>GAACTCGTCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG...............................................................................................................................................................................TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGGGAATGAGGGAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCGCGGATTGTACAG.................................................................................................................................................................................................................................................TGGCCTCTTGCCGTCATTGGCTGGGATTAGTCATGTTGCTATCCAATTTCCAGCATATGAAAAGCTGAAATCGTACTTGGCAAAAAGGG.............................................................................................CCAATAAGCATACCAATGAACTAAACTCTGGTGAAGTAGCAATTGCCTCTTCGATGGCAAAAATACTTGCCTCTGTAATGACTTATCCACATGAG.................................................................................GTCGTTCGTTCTAAACTTCAAGAACAAGGGCAAGTAAGAAACTCAGAGAAAGCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217916" ref_strand="+" ref_description="SGN-E217916 [cLEL-23-E13](-)">
      <seq>gcatataatggggttgtcgattgtgtaaaaaagatgttcaaacaggaacgtctgactgcattctaccggggttgtggaaccaatcttctaaggaccacaccctctgctgttattacatttaccagttatgaaatgatccacaaaatacttcaacgagctatacttccagaaaaggattcagaaccaaatcctagacgtaaatcccataaggtagccgaagaacatggagacaatgatgaaaaattacaacaatcagaaagcacatcaaataagagaactcctttaattccattgagtaactctgataatctaactgctagacattgattagagatgtttctctttttccttttttttttttttgtcgtggaagcaatttgcaacaagtgtttgctgttgcacaattttttttattttgtatcttactattttgggtgaagaaagttttatatttcgatctaataaacaagggcgcggatagtttccctctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="115940" stop="114849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115640" g_stop="115149" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="508"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E217916" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115640" e_stop="115149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA</genome_strand>
        <mrna_strand>GCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCCTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAACAAGGGCGCGGATAGTTTCCCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218136" ref_strand="+" ref_description="SGN-E218136 [cLEL-23-E13](-)">
      <seq>aacgagctatacttccagaaaaggattcagaaccaaatcctagacgtaaatcccataaggtagccgaagaacatggagacaatgatgaaaaattccaacaatcagaaagcacatcaaataagagaactcctttaattccattgagtaactctgataatctaactgctagacattgattagaaatgtttctctttttctttttttttttttttgtcgtggaagcaatttgcaacaagtgtttgctgttgcacaattttttttattttgtatcttactattttgggtgaagaaagttttatatttcgatctaataaagaagggcgcggatagtttccctctccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="115789" stop="114851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115489" g_stop="115149" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="357"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E218136" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115489" e_stop="115149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA</genome_strand>
        <mrna_strand>AACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTCCAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAAATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731960" ref_strand="+" ref_description="SGN-E731960 [LA28CG05]">
      <seq>cccctaactcgtccaagacgtcagtggaccggtcattcttcttgaaaacccaaaagggtatttgtatatgatgaaaccccacctgggtttttgctaaatcttcaaagggttctttaaattcttgaaaaaagagtgattttttcagttttttttcaatatttttgctgttgtttgggttgttgaggtaaagttttccggcaagaatgaccaccgccggcgccggcgaccttaagagtgttagaggtatcatatgtgaagttggtgctggtgcttctgcaggtgccattgctgctacatttatgtgtccattggatgttattaagacaagactgcaagtacatggtctgcctcaggtttctcaatctgctcgtcaaggtagtgtcattgtcacaagcttacagaatatactaagaacagaaggtttcaggggactttatcgaggcctttcaccaacattgacagctcttcttccgaactgggcggtgtacttcacagtttatgaacatctcaaggattcgttgcattcacatgtggatagcagtgggcagcttacgattggtgcaaacatgcttgcagctgcgggggcgggggctgcaacatccattacaacaaatccattgtgggttgttaagacccggctcatgacacagggaatgagggagggtgtagttccttataaaggtatattgtctgctttaatacgaataacacatgaagaagggatccgcggattgtacagtggcctcttgccgtcattggctgggattagtcatgttgctatccaatttccagcatatgaaaagctgaaatcgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="121768" stop="115673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121468" g_stop="121190" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121189" i_stop="120684" i_length="506">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120683" g_stop="120588" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="375" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120587" i_stop="119206" i_length="1382">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119205" g_stop="119099" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="482" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119098" i_stop="118640" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118639" g_stop="118591" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="531" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118590" i_stop="118416" i_length="175">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118415" g_stop="118303" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="644" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118302" i_stop="116386" i_length="1917">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116385" g_stop="116291" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="739" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="116290" i_stop="116050" i_length="241">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="116049" g_stop="115973" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="816" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E731960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121468" e_stop="121190"/>
          <exon e_start="120683" e_stop="120588"/>
          <exon e_start="119205" e_stop="119099"/>
          <exon e_start="118639" e_stop="118591"/>
          <exon e_start="118415" e_stop="118303"/>
          <exon e_start="116385" e_stop="116291"/>
          <exon e_start="116049" e_stop="115973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTAACTCGTCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAGGTATGTACTGGACTCCTTTTTTTTCCTTTTGAATTTAATTTGTCAATTGTTGTTATCTGGGGTTTTAATGTTAGAGAAGGTAAATGGTTTTGTTTTTTGATCTTTGAGTTTTTTGAGCTATTTGAATGTGATTTTTAGTTAATTGGGGGTTGTAAAAATCATTGCTTTTGTATATTTGGGTAGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTTTTCAGCTGTTTGAATGTGAATTTGAGTTAATTGGGGGGTGCGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTCTTTGAGCTGTTTGAATGTGAATTTGAGTTAATCGGAGATTTTTTAGGTGCTATTGCTGCTGTATTTGTGTGTAAATTGGATCTTTGAGGTTTTTGAGCTATTTGAATGTGAATTGAGTTGATTGGGGGTTGTAAAAATCTAAGCTTTTGTATCTTTTGATGTTCTTAAGGTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAGGTTTGTGCTCGTCGTTGTCTCTTATATTAGAAATGATAAGAACTGCTACCTTAAGTCGAATTGCTTCCTTCCGATTGAACAAATGCAAAAATGATATATTAAGATTAATGTGATCTTCTAATTGAATTATTTCATAGCTCTAGTAATGATCTGTAGATCCCTTATAACACGTCGATGGTGTCCTATATATAACAGATAAGAACACTTCTTGTTCACAACTTAACAACCATGAGAATTTCTATTTGCCTTTTGTGTGAACAAAACACCACTCAGATCAACATATCTAAAAAATGGACTGCGAATCATTAATGCTTATCCGATCAAACGAAGCATAAATGACAGACCTGAGTTTTCCTCATTTTCAACGATAATTCATTTCAGGTCCTGCTCCTCACTACTAGTTGACTTGGATTTAAGACAGATTGTCAAAATCTAGCGATAACTTTTACCCTGATTTTACAACAGAACAATGGATTCTATGTTTTTCCAGTTATAGCATATCTCTGGTAAAAGAAGTCCGGCTGTTGCTTTGAATTCTTACCAATCTTCTCAGGCAAAGTAGAAGTATTAGCTTTTATTGACTGCCCCTTATAATTTTTACTTATCTTTGTGTTCTTCTAGATTCTTAAGTAAGGTATTTGTTAGCATAAAAATAGGGGTGCTGTACAGTTGCATTATACATTACCTTATCCAAACAAATATGTGACTACGAAAACATATATCCAACCAATATACCCAGGTTGGATCTTTTTTGAGCTCCAACATAGCAACAAAAGAATATGCATTCTGGATTTAGGAATTTTCTTGTCTTGGATGCTTAATTATTTCACACAAAGCTGTACCTTAGTGCATGAAGAGCTATTTTGTTGTATTTTTTCTGTCTTCATGTTCCTTCAGCTTTCACTCAGATAGGCTGCCCATAGGGCTTCTGTTTCCTCCAATTTCCATTTTCTCCAGTGTAGGATGTCCAACATGTTGCTTTTGGTGCTTTTCCTTGTATTTCTGCTTTCCATATTTGATGTAGTCATTTTCTAAATGGACTTCCACATTCTGTACATTGTGCACTCTAAGCTCATCGCATCTTTGTGGGAAATTTCCTTTGGCAGTGAGTATAATTTGGTGATTTAGAGCAGAGTTGCTGTCGACTTTTTCATGAAGGTCTCTAGGGCTAGTTATATTTTCTTCTTATTTGAACAAGTGTTAATTTGAGGAGCTGATAATTGGGCTTTCATCTTGTTCCTTCTTTGGATGAATATACTTTTTTTTGGTCTTCTGTTGAACCTATTTAGATGGTAACCATAGAAAAAGAGGCAAAGACAAAAAAGAAGTCCGAATCCATATTACTGCCACACTTATTTTTCCTTGAATTATTTGGGCAACAGGTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCGGTAAGCATTGTCTTGTTCAATTTCTATTTCTGTGGATTGCAATTAGTTGAACTTCCTTCATGAAATGAATCATCAAAATTGAATGAGATAAATATTCAGATATGGTCTCTTATGGAACTGCATCCTTTCTTATTGAATAATGCAATGATTAGGGTTACCTTGCACACCACCACAAACATGTTCTTATTGCTGATGAAGAATAAAAATGAATAAGGCTTTCCTTTTGGGCGGGGGCAGGTGTTGCTGTATTGAACTCCTGGATAGCTTTTTAATCATTTAATGGAAATTAAAAGTTGATTTACCAGTGTTAGCTGTAATCTTATCGGCTTTGTTTACAACTGACTCCATGTTGGCATATATTTTCTGTGCATGCTGAATGCTGAATCCACCCACCCTTTTTTCTTCTGAATTTCCACATAAGTAACTGTTTTGAGAAAAAAACATTCACATCTTCTGCAGGTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATGGTAAACTTTTACTCTATTAGTTTTCTGGACTAATAGCTTCCATCACTTCTTTTTTAAATGTTTGTTTGAATGCCATCATATTTTTTAATCCTTTACTATTGGAAGTTGTGATGAAGACAATAGGAAACTTAGCACTTAGCTTTACCAAAAGAATTTTCTTGCGCGTTAAATGCAGTGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATGGTAGGTCTCTCTCATATAGTTAGCGTAGATTTATTCTTCTGTGCGCACTTTATTGTACCTTAAAATGCATAAATGCTCAGAAATTTAATAGAATACCAATTTGATTAAGTTGGCTTCCTTCAATTTGGGTAATTGGTGTTGTTGGTAGGGAGCCATGATCCATGCACTTCCATTTTTCTATATATTTCCTTGCCCTGCTCTAGTTTCTGCAGTCTTTATCACTGTTCTATTACGTATCCATGTATGCTTTCCTTCATCAACTATGATCCGAGAGAAGAATGGGAATAGGTGAAATGCAATCCTTTACCTCGTGAGGGCTTAAATGTGGAGTATCAAAAGTTTCTTTTATGTTGGTGGCATCCGAGTTAGCTTGTGTGTAACTCGACTGTTTTACCGGGTACATGCTATCTCCCACCAGCACAGGTATCATGTAGCTCTGCCAACTAGGCCAGTAGGCCTAGTCACCTAGACAGATGAAAAGAGATCACCTAGTCTTTCTTTCCTCTGTTGGTATTGGAGTATTAGAGTGATACATCTGGAAAATTGAAACCAAGACTAGCTGTCTGTATGTAAGCCTGTTGATATAGTTAGGATTATGCTGCTCTATAGCTAGTGAAAGAAAAATTCCTCTGATTTTTCTGTCCTCCCCCTTATCAAAAAGGAGTTTCTCATGTGCATATTCAGCATGTTCACTTTTCTATCATGATTTCTTAATAGAGAGAAGAATGCAGATTCCACACAGTTTAGAAATCCTGAGATATGCATTAACCCCTCCAACCGAAGCATGGATAGTAGAAAAGTTGACTTGGGGCATTTGACTGGAATCACATGCAATAAGCAAGCATAGGGGAGAGAAATTCTAAAATTTTATGAGGGTAGGTAAACATGTCATGGACATTTTCAGAATTCCCATGCTTTTTTTTTTCTCTTCTAAAGGGAGAAGTCTCTTGTGAGTTAGTTGATCCAGTCCAGTTGAGGCCCTGGTCTGAAACTCGAGGAAGCATGGGCCTGCCCCCCTCTACCCTCCTCCTCCTCTCACTTATATGTTAGGCTTTAGTTCTTCGCAGGTTCAATCTTGTTACCCAATTACGCATCCTGTGTTGTGGTTCTTTTGTTGTTGAATCAAAACATTGGGGCAAGAGTTCCCTTGTGTTTCAGATATACCTTTGTTGTAGTAAAGGATATATCATCTTGTTGTATTCCTTTTTTAATTATTTCTAGCACATTTCGTGCTATATATATAATAGTTACCTTCTTTCAGAAAAGGATATACACATCTTGTGGATAGTTGATTTGAGTTTGTGAACATTTGATATAGATCCATACCTGGATAGCTACAACATGTAGGTGAATTATCAATGAAACGCTTCAACTTATCAAAAAAATGTTCTTGTTGGATAATTGGTGTCTGGTGCAACTGCAGCTTGCCGTATTTCCAGCAACTGAAATTGGTGTAACAACAGTAAATAGTTCTAATTAGTATAATTGGAGATGCTTCTTCACTAAAATGAATCAGAATCTAAACTTACGTGTATCAATTTAGTCATGTTCACGTTTTCTTTAGATTCAATATTTGCTAAGAGTCTTTGTCTTCTAAGAGATTTATATTCCGGGAAAATATGTTGATAATTTGCTGCCAGAGAATCTATTTTGTAAGGATTCTCATAGCTGATCCCAATTTGTTCGGAATTGAGGCATAATTGTAGTACCCATTGTTGTAAGCATCTGCAGATGGTGCCAATACAGTTGTCGTCCTAGTGCAACATAAGCGTGTTAAGTTCACGTAACATAGGCGAAAGCACAAGTTTCTAATACCATTAGAGTTTATTGTTAGGGTGTCCTTAATTACTATTGGAATAATAACTTGCATTTGCTTACGTAGCGTGTTCCTGATATTTTCTTTTCCTCATTCTTTAGACACAGGGAATGAGGGAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCGCGGATTGTACAGGTTAGTTATATAGCGAAGATAGTTATATACAAACTTTTTACGTATGTGTGTTTCATCCTTTGTAGAGACGCTTCAGTTCCATACCCTCTTAACCAACTATGCGAAGATGGAAAACATCTTCATAGGATAATAAGCAATTACTCGTCCAAAAAAAAGAAAAAACAATATCCATTTTCATCACCTGATGTTGACTCTAGTTAGTTATTTTGGGTTTGATATCTCCGTTTGCTTTGGGTTGCAGTGGCCTCTTGCCGTCATTGGCTGGGATTAGTCATGTTGCTATCCAATTTCCAGCATATGAAAAGCTGAAATCGTACT</genome_strand>
        <mrna_strand>CCCCTAACTCGTCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG...............................................................................................................................................................................TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGGGAATGAGGGAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCGCGGATTGTACAG.................................................................................................................................................................................................................................................TGGCCTCTTGCCGTCATTGGCTGGGATTAGTCATGTTGCTATCCAATTTCCAGCATATGAAAAGCTGAAATCGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343854" ref_strand="+" ref_description="SGN-E343854 [cTOF-12-B13]">
      <seq>tccaagacgtcagtggaccggtcattcttcttgaaaacccaaaagggtatttgtatatgatgaaaccccacctgggtttttgctaaatcttcaaagggttctttaaattcttgaaaaaagagtgattttttcagttttttttcaatatttttgctgttgtttgggttgttgaggtaaagttttccggcaagaatgaccaccgccggcgccggcgaccttaagagtgttagaggtatcatatgtgaagttggtgctggtgcttctgcaggtgccattgctgctacatttatgtgtccattggatgttattaagacaagactgcaagtacatggtctgcctcaggtttctcaatctgctcgtcaaggtagtgtcattgtcacaagcttacagaatatactaagaacagaaggtttcaggggactttatcgaggcctttcaccaacattgacagctcttcttccgaactgggcggtgtacttcacagtttatgaacatctcaaggattcgttgcattcacatgtggatagcagtgggcagcttacgattggtgcaaacatgcttgcagctgcgggggcgggggctgcaacatccattacaacaaatccattgtgggttgttaagacccggctcatgacacagggaatgagggaggggtgtagttccttataaaggtatattgtctgctttaatacgaataacacatgaagaagggatcccgcggattgtacagtggcctcttgccgtcattggctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="121757" stop="115725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121457" g_stop="121190" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121189" i_stop="120684" i_length="506">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120683" g_stop="120588" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="364" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120587" i_stop="119206" i_length="1382">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119205" g_stop="119099" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="471" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119098" i_stop="118640" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118639" g_stop="118591" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="520" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118590" i_stop="118416" i_length="175">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118415" g_stop="118303" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="633" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118302" i_stop="116386" i_length="1917">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116385" g_stop="116291" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="730" r_length="97" r_score="0.958"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="116290" i_stop="116050" i_length="241">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="116049" g_stop="116025" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="755" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E343854" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121457" e_stop="121190"/>
          <exon e_start="120683" e_stop="120588"/>
          <exon e_start="119205" e_stop="119099"/>
          <exon e_start="118639" e_stop="118591"/>
          <exon e_start="118415" e_stop="118303"/>
          <exon e_start="116385" e_stop="116291"/>
          <exon e_start="116049" e_stop="116025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAGGTATGTACTGGACTCCTTTTTTTTCCTTTTGAATTTAATTTGTCAATTGTTGTTATCTGGGGTTTTAATGTTAGAGAAGGTAAATGGTTTTGTTTTTTGATCTTTGAGTTTTTTGAGCTATTTGAATGTGATTTTTAGTTAATTGGGGGTTGTAAAAATCATTGCTTTTGTATATTTGGGTAGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTTTTCAGCTGTTTGAATGTGAATTTGAGTTAATTGGGGGGTGCGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTCTTTGAGCTGTTTGAATGTGAATTTGAGTTAATCGGAGATTTTTTAGGTGCTATTGCTGCTGTATTTGTGTGTAAATTGGATCTTTGAGGTTTTTGAGCTATTTGAATGTGAATTGAGTTGATTGGGGGTTGTAAAAATCTAAGCTTTTGTATCTTTTGATGTTCTTAAGGTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAGGTTTGTGCTCGTCGTTGTCTCTTATATTAGAAATGATAAGAACTGCTACCTTAAGTCGAATTGCTTCCTTCCGATTGAACAAATGCAAAAATGATATATTAAGATTAATGTGATCTTCTAATTGAATTATTTCATAGCTCTAGTAATGATCTGTAGATCCCTTATAACACGTCGATGGTGTCCTATATATAACAGATAAGAACACTTCTTGTTCACAACTTAACAACCATGAGAATTTCTATTTGCCTTTTGTGTGAACAAAACACCACTCAGATCAACATATCTAAAAAATGGACTGCGAATCATTAATGCTTATCCGATCAAACGAAGCATAAATGACAGACCTGAGTTTTCCTCATTTTCAACGATAATTCATTTCAGGTCCTGCTCCTCACTACTAGTTGACTTGGATTTAAGACAGATTGTCAAAATCTAGCGATAACTTTTACCCTGATTTTACAACAGAACAATGGATTCTATGTTTTTCCAGTTATAGCATATCTCTGGTAAAAGAAGTCCGGCTGTTGCTTTGAATTCTTACCAATCTTCTCAGGCAAAGTAGAAGTATTAGCTTTTATTGACTGCCCCTTATAATTTTTACTTATCTTTGTGTTCTTCTAGATTCTTAAGTAAGGTATTTGTTAGCATAAAAATAGGGGTGCTGTACAGTTGCATTATACATTACCTTATCCAAACAAATATGTGACTACGAAAACATATATCCAACCAATATACCCAGGTTGGATCTTTTTTGAGCTCCAACATAGCAACAAAAGAATATGCATTCTGGATTTAGGAATTTTCTTGTCTTGGATGCTTAATTATTTCACACAAAGCTGTACCTTAGTGCATGAAGAGCTATTTTGTTGTATTTTTTCTGTCTTCATGTTCCTTCAGCTTTCACTCAGATAGGCTGCCCATAGGGCTTCTGTTTCCTCCAATTTCCATTTTCTCCAGTGTAGGATGTCCAACATGTTGCTTTTGGTGCTTTTCCTTGTATTTCTGCTTTCCATATTTGATGTAGTCATTTTCTAAATGGACTTCCACATTCTGTACATTGTGCACTCTAAGCTCATCGCATCTTTGTGGGAAATTTCCTTTGGCAGTGAGTATAATTTGGTGATTTAGAGCAGAGTTGCTGTCGACTTTTTCATGAAGGTCTCTAGGGCTAGTTATATTTTCTTCTTATTTGAACAAGTGTTAATTTGAGGAGCTGATAATTGGGCTTTCATCTTGTTCCTTCTTTGGATGAATATACTTTTTTTTGGTCTTCTGTTGAACCTATTTAGATGGTAACCATAGAAAAAGAGGCAAAGACAAAAAAGAAGTCCGAATCCATATTACTGCCACACTTATTTTTCCTTGAATTATTTGGGCAACAGGTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCGGTAAGCATTGTCTTGTTCAATTTCTATTTCTGTGGATTGCAATTAGTTGAACTTCCTTCATGAAATGAATCATCAAAATTGAATGAGATAAATATTCAGATATGGTCTCTTATGGAACTGCATCCTTTCTTATTGAATAATGCAATGATTAGGGTTACCTTGCACACCACCACAAACATGTTCTTATTGCTGATGAAGAATAAAAATGAATAAGGCTTTCCTTTTGGGCGGGGGCAGGTGTTGCTGTATTGAACTCCTGGATAGCTTTTTAATCATTTAATGGAAATTAAAAGTTGATTTACCAGTGTTAGCTGTAATCTTATCGGCTTTGTTTACAACTGACTCCATGTTGGCATATATTTTCTGTGCATGCTGAATGCTGAATCCACCCACCCTTTTTTCTTCTGAATTTCCACATAAGTAACTGTTTTGAGAAAAAAACATTCACATCTTCTGCAGGTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATGGTAAACTTTTACTCTATTAGTTTTCTGGACTAATAGCTTCCATCACTTCTTTTTTAAATGTTTGTTTGAATGCCATCATATTTTTTAATCCTTTACTATTGGAAGTTGTGATGAAGACAATAGGAAACTTAGCACTTAGCTTTACCAAAAGAATTTTCTTGCGCGTTAAATGCAGTGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATGGTAGGTCTCTCTCATATAGTTAGCGTAGATTTATTCTTCTGTGCGCACTTTATTGTACCTTAAAATGCATAAATGCTCAGAAATTTAATAGAATACCAATTTGATTAAGTTGGCTTCCTTCAATTTGGGTAATTGGTGTTGTTGGTAGGGAGCCATGATCCATGCACTTCCATTTTTCTATATATTTCCTTGCCCTGCTCTAGTTTCTGCAGTCTTTATCACTGTTCTATTACGTATCCATGTATGCTTTCCTTCATCAACTATGATCCGAGAGAAGAATGGGAATAGGTGAAATGCAATCCTTTACCTCGTGAGGGCTTAAATGTGGAGTATCAAAAGTTTCTTTTATGTTGGTGGCATCCGAGTTAGCTTGTGTGTAACTCGACTGTTTTACCGGGTACATGCTATCTCCCACCAGCACAGGTATCATGTAGCTCTGCCAACTAGGCCAGTAGGCCTAGTCACCTAGACAGATGAAAAGAGATCACCTAGTCTTTCTTTCCTCTGTTGGTATTGGAGTATTAGAGTGATACATCTGGAAAATTGAAACCAAGACTAGCTGTCTGTATGTAAGCCTGTTGATATAGTTAGGATTATGCTGCTCTATAGCTAGTGAAAGAAAAATTCCTCTGATTTTTCTGTCCTCCCCCTTATCAAAAAGGAGTTTCTCATGTGCATATTCAGCATGTTCACTTTTCTATCATGATTTCTTAATAGAGAGAAGAATGCAGATTCCACACAGTTTAGAAATCCTGAGATATGCATTAACCCCTCCAACCGAAGCATGGATAGTAGAAAAGTTGACTTGGGGCATTTGACTGGAATCACATGCAATAAGCAAGCATAGGGGAGAGAAATTCTAAAATTTTATGAGGGTAGGTAAACATGTCATGGACATTTTCAGAATTCCCATGCTTTTTTTTTTCTCTTCTAAAGGGAGAAGTCTCTTGTGAGTTAGTTGATCCAGTCCAGTTGAGGCCCTGGTCTGAAACTCGAGGAAGCATGGGCCTGCCCCCCTCTACCCTCCTCCTCCTCTCACTTATATGTTAGGCTTTAGTTCTTCGCAGGTTCAATCTTGTTACCCAATTACGCATCCTGTGTTGTGGTTCTTTTGTTGTTGAATCAAAACATTGGGGCAAGAGTTCCCTTGTGTTTCAGATATACCTTTGTTGTAGTAAAGGATATATCATCTTGTTGTATTCCTTTTTTAATTATTTCTAGCACATTTCGTGCTATATATATAATAGTTACCTTCTTTCAGAAAAGGATATACACATCTTGTGGATAGTTGATTTGAGTTTGTGAACATTTGATATAGATCCATACCTGGATAGCTACAACATGTAGGTGAATTATCAATGAAACGCTTCAACTTATCAAAAAAATGTTCTTGTTGGATAATTGGTGTCTGGTGCAACTGCAGCTTGCCGTATTTCCAGCAACTGAAATTGGTGTAACAACAGTAAATAGTTCTAATTAGTATAATTGGAGATGCTTCTTCACTAAAATGAATCAGAATCTAAACTTACGTGTATCAATTTAGTCATGTTCACGTTTTCTTTAGATTCAATATTTGCTAAGAGTCTTTGTCTTCTAAGAGATTTATATTCCGGGAAAATATGTTGATAATTTGCTGCCAGAGAATCTATTTTGTAAGGATTCTCATAGCTGATCCCAATTTGTTCGGAATTGAGGCATAATTGTAGTACCCATTGTTGTAAGCATCTGCAGATGGTGCCAATACAGTTGTCGTCCTAGTGCAACATAAGCGTGTTAAGTTCACGTAACATAGGCGAAAGCACAAGTTTCTAATACCATTAGAGTTTATTGTTAGGGTGTCCTTAATTACTATTGGAATAATAACTTGCATTTGCTTACGTAGCGTGTTCCTGATATTTTCTTTTCCTCATTCTTTAGACACAGGGAATGAGGGA-GGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGAT-CCGCGGATTGTACAGGTTAGTTATATAGCGAAGATAGTTATATACAAACTTTTTACGTATGTGTGTTTCATCCTTTGTAGAGACGCTTCAGTTCCATACCCTCTTAACCAACTATGCGAAGATGGAAAACATCTTCATAGGATAATAAGCAATTACTCGTCCAAAAAAAAGAAAAAACAATATCCATTTTCATCACCTGATGTTGACTCTAGTTAGTTATTTTGGGTTTGATATCTCCGTTTGCTTTGGGTTGCAGTGGCCTCTTGCCGTCATTGGCTGGG</genome_strand>
        <mrna_strand>TCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG...............................................................................................................................................................................TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGGGAATGAGGGAGGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCCGCGGATTGTACAG.................................................................................................................................................................................................................................................TGGCCTCTTGCCGTCATTGGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544434" ref_strand="+" ref_description="SGN-E544434 [TUS-66-M6]">
      <seq>gtcagtggaccggtcattcttcttgaaaacccaaaagggtatttgtatatgatgaaaccccacctgggtttttgctaaatcttcaaagggttctttaaattcttgaaaaaagagtgattttttcagttttttttcaatatttttgctgttgtttgggttgttgaggtaaagttttccggcaagaatgaccaccgccggcgccggcgaccttaagagtgttagaggtatcatatgtgaagttggtgctggtgcttctgcaggtgccattgctgctacatttatgtgtccattggatgttattaagacaagactgcaagtacatggtctgcctcaggtttctcaatctgctcgtcaaggtagtgtcattgtcacaagcttacagaatatactaagaacagaaggtttcaggggactttatcgaggcctttcaccaacattgacagctcttcttccgaactgggcggtgtacttcacagtttatgaacatctcaaggattcgttgcattcacatgtggatagcagtgggcagcttacgattggtgcaaacatgcttgcagctgcgggggcgggggctgcaacatccattacaacaaatccattgtgggttgttaagacccggctcatgacacagggaatgagggaagggtgtagttccttataaaggtatattgtctgctttaatacgaataacacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="121749" stop="116015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121449" g_stop="121190" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121189" i_stop="120684" i_length="506">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120683" g_stop="120588" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="356" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120587" i_stop="119206" i_length="1382">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119205" g_stop="119099" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="463" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119098" i_stop="118640" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118639" g_stop="118591" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="512" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118590" i_stop="118416" i_length="175">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118415" g_stop="118303" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="625" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118302" i_stop="116386" i_length="1917">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116385" g_stop="116315" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="697" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E544434" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121449" e_stop="121190"/>
          <exon e_start="120683" e_stop="120588"/>
          <exon e_start="119205" e_stop="119099"/>
          <exon e_start="118639" e_stop="118591"/>
          <exon e_start="118415" e_stop="118303"/>
          <exon e_start="116385" e_stop="116315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAGGTATGTACTGGACTCCTTTTTTTTCCTTTTGAATTTAATTTGTCAATTGTTGTTATCTGGGGTTTTAATGTTAGAGAAGGTAAATGGTTTTGTTTTTTGATCTTTGAGTTTTTTGAGCTATTTGAATGTGATTTTTAGTTAATTGGGGGTTGTAAAAATCATTGCTTTTGTATATTTGGGTAGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTTTTCAGCTGTTTGAATGTGAATTTGAGTTAATTGGGGGGTGCGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTCTTTGAGCTGTTTGAATGTGAATTTGAGTTAATCGGAGATTTTTTAGGTGCTATTGCTGCTGTATTTGTGTGTAAATTGGATCTTTGAGGTTTTTGAGCTATTTGAATGTGAATTGAGTTGATTGGGGGTTGTAAAAATCTAAGCTTTTGTATCTTTTGATGTTCTTAAGGTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAGGTTTGTGCTCGTCGTTGTCTCTTATATTAGAAATGATAAGAACTGCTACCTTAAGTCGAATTGCTTCCTTCCGATTGAACAAATGCAAAAATGATATATTAAGATTAATGTGATCTTCTAATTGAATTATTTCATAGCTCTAGTAATGATCTGTAGATCCCTTATAACACGTCGATGGTGTCCTATATATAACAGATAAGAACACTTCTTGTTCACAACTTAACAACCATGAGAATTTCTATTTGCCTTTTGTGTGAACAAAACACCACTCAGATCAACATATCTAAAAAATGGACTGCGAATCATTAATGCTTATCCGATCAAACGAAGCATAAATGACAGACCTGAGTTTTCCTCATTTTCAACGATAATTCATTTCAGGTCCTGCTCCTCACTACTAGTTGACTTGGATTTAAGACAGATTGTCAAAATCTAGCGATAACTTTTACCCTGATTTTACAACAGAACAATGGATTCTATGTTTTTCCAGTTATAGCATATCTCTGGTAAAAGAAGTCCGGCTGTTGCTTTGAATTCTTACCAATCTTCTCAGGCAAAGTAGAAGTATTAGCTTTTATTGACTGCCCCTTATAATTTTTACTTATCTTTGTGTTCTTCTAGATTCTTAAGTAAGGTATTTGTTAGCATAAAAATAGGGGTGCTGTACAGTTGCATTATACATTACCTTATCCAAACAAATATGTGACTACGAAAACATATATCCAACCAATATACCCAGGTTGGATCTTTTTTGAGCTCCAACATAGCAACAAAAGAATATGCATTCTGGATTTAGGAATTTTCTTGTCTTGGATGCTTAATTATTTCACACAAAGCTGTACCTTAGTGCATGAAGAGCTATTTTGTTGTATTTTTTCTGTCTTCATGTTCCTTCAGCTTTCACTCAGATAGGCTGCCCATAGGGCTTCTGTTTCCTCCAATTTCCATTTTCTCCAGTGTAGGATGTCCAACATGTTGCTTTTGGTGCTTTTCCTTGTATTTCTGCTTTCCATATTTGATGTAGTCATTTTCTAAATGGACTTCCACATTCTGTACATTGTGCACTCTAAGCTCATCGCATCTTTGTGGGAAATTTCCTTTGGCAGTGAGTATAATTTGGTGATTTAGAGCAGAGTTGCTGTCGACTTTTTCATGAAGGTCTCTAGGGCTAGTTATATTTTCTTCTTATTTGAACAAGTGTTAATTTGAGGAGCTGATAATTGGGCTTTCATCTTGTTCCTTCTTTGGATGAATATACTTTTTTTTGGTCTTCTGTTGAACCTATTTAGATGGTAACCATAGAAAAAGAGGCAAAGACAAAAAAGAAGTCCGAATCCATATTACTGCCACACTTATTTTTCCTTGAATTATTTGGGCAACAGGTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCGGTAAGCATTGTCTTGTTCAATTTCTATTTCTGTGGATTGCAATTAGTTGAACTTCCTTCATGAAATGAATCATCAAAATTGAATGAGATAAATATTCAGATATGGTCTCTTATGGAACTGCATCCTTTCTTATTGAATAATGCAATGATTAGGGTTACCTTGCACACCACCACAAACATGTTCTTATTGCTGATGAAGAATAAAAATGAATAAGGCTTTCCTTTTGGGCGGGGGCAGGTGTTGCTGTATTGAACTCCTGGATAGCTTTTTAATCATTTAATGGAAATTAAAAGTTGATTTACCAGTGTTAGCTGTAATCTTATCGGCTTTGTTTACAACTGACTCCATGTTGGCATATATTTTCTGTGCATGCTGAATGCTGAATCCACCCACCCTTTTTTCTTCTGAATTTCCACATAAGTAACTGTTTTGAGAAAAAAACATTCACATCTTCTGCAGGTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATGGTAAACTTTTACTCTATTAGTTTTCTGGACTAATAGCTTCCATCACTTCTTTTTTAAATGTTTGTTTGAATGCCATCATATTTTTTAATCCTTTACTATTGGAAGTTGTGATGAAGACAATAGGAAACTTAGCACTTAGCTTTACCAAAAGAATTTTCTTGCGCGTTAAATGCAGTGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATGGTAGGTCTCTCTCATATAGTTAGCGTAGATTTATTCTTCTGTGCGCACTTTATTGTACCTTAAAATGCATAAATGCTCAGAAATTTAATAGAATACCAATTTGATTAAGTTGGCTTCCTTCAATTTGGGTAATTGGTGTTGTTGGTAGGGAGCCATGATCCATGCACTTCCATTTTTCTATATATTTCCTTGCCCTGCTCTAGTTTCTGCAGTCTTTATCACTGTTCTATTACGTATCCATGTATGCTTTCCTTCATCAACTATGATCCGAGAGAAGAATGGGAATAGGTGAAATGCAATCCTTTACCTCGTGAGGGCTTAAATGTGGAGTATCAAAAGTTTCTTTTATGTTGGTGGCATCCGAGTTAGCTTGTGTGTAACTCGACTGTTTTACCGGGTACATGCTATCTCCCACCAGCACAGGTATCATGTAGCTCTGCCAACTAGGCCAGTAGGCCTAGTCACCTAGACAGATGAAAAGAGATCACCTAGTCTTTCTTTCCTCTGTTGGTATTGGAGTATTAGAGTGATACATCTGGAAAATTGAAACCAAGACTAGCTGTCTGTATGTAAGCCTGTTGATATAGTTAGGATTATGCTGCTCTATAGCTAGTGAAAGAAAAATTCCTCTGATTTTTCTGTCCTCCCCCTTATCAAAAAGGAGTTTCTCATGTGCATATTCAGCATGTTCACTTTTCTATCATGATTTCTTAATAGAGAGAAGAATGCAGATTCCACACAGTTTAGAAATCCTGAGATATGCATTAACCCCTCCAACCGAAGCATGGATAGTAGAAAAGTTGACTTGGGGCATTTGACTGGAATCACATGCAATAAGCAAGCATAGGGGAGAGAAATTCTAAAATTTTATGAGGGTAGGTAAACATGTCATGGACATTTTCAGAATTCCCATGCTTTTTTTTTTCTCTTCTAAAGGGAGAAGTCTCTTGTGAGTTAGTTGATCCAGTCCAGTTGAGGCCCTGGTCTGAAACTCGAGGAAGCATGGGCCTGCCCCCCTCTACCCTCCTCCTCCTCTCACTTATATGTTAGGCTTTAGTTCTTCGCAGGTTCAATCTTGTTACCCAATTACGCATCCTGTGTTGTGGTTCTTTTGTTGTTGAATCAAAACATTGGGGCAAGAGTTCCCTTGTGTTTCAGATATACCTTTGTTGTAGTAAAGGATATATCATCTTGTTGTATTCCTTTTTTAATTATTTCTAGCACATTTCGTGCTATATATATAATAGTTACCTTCTTTCAGAAAAGGATATACACATCTTGTGGATAGTTGATTTGAGTTTGTGAACATTTGATATAGATCCATACCTGGATAGCTACAACATGTAGGTGAATTATCAATGAAACGCTTCAACTTATCAAAAAAATGTTCTTGTTGGATAATTGGTGTCTGGTGCAACTGCAGCTTGCCGTATTTCCAGCAACTGAAATTGGTGTAACAACAGTAAATAGTTCTAATTAGTATAATTGGAGATGCTTCTTCACTAAAATGAATCAGAATCTAAACTTACGTGTATCAATTTAGTCATGTTCACGTTTTCTTTAGATTCAATATTTGCTAAGAGTCTTTGTCTTCTAAGAGATTTATATTCCGGGAAAATATGTTGATAATTTGCTGCCAGAGAATCTATTTTGTAAGGATTCTCATAGCTGATCCCAATTTGTTCGGAATTGAGGCATAATTGTAGTACCCATTGTTGTAAGCATCTGCAGATGGTGCCAATACAGTTGTCGTCCTAGTGCAACATAAGCGTGTTAAGTTCACGTAACATAGGCGAAAGCACAAGTTTCTAATACCATTAGAGTTTATTGTTAGGGTGTCCTTAATTACTATTGGAATAATAACTTGCATTTGCTTACGTAGCGTGTTCCTGATATTTTCTTTTCCTCATTCTTTAGACACAGGGAATGAGGG-AGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGA</genome_strand>
        <mrna_strand>GTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG...............................................................................................................................................................................TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGGGAATGAGGGAAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308004" ref_strand="+" ref_description="SGN-E308004 [cLEY-14-M19]">
      <seq>tcagtggaccggtcattcttcttgaaaacccaaaagggtatttgtatatgatgaaaccccacctgggtttttgctaaatcttcaaagggttctttaaattcttgaaaaaagagtgattttttcagttttttttcaatatttttgctgttgtttgggttgttgaggtaaagttttccggcaagaatgaccaccgccggcgccggcgaccttaagagtgttagaggtatcatatgtgaagttggtgctggtgcttctgcaggtgccattgctgctacatttatgtgtccattggatgttattaagacaagactgcaagtacatggtctgcctcaggtttctcaatctgctcgtcaaggtagtgtcattgtcacaagcttacagaatatactaagaacagaaggtttcaggggactttatcgaggcctttcaccaacattgacagctcttcttccgaactgggcggtgtacttcacagtttatgaacatctcaaggattcgttgcattcacatgtggatagcagtgggcagcttacgattggtgcaaacatgcttgcagctgcgggggcgggggctgcaacatccattacaacaaatccattgtgggttgttaagacccggctcatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="121748" stop="118003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121448" g_stop="121190" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121189" i_stop="120684" i_length="506">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120683" g_stop="120588" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="355" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120587" i_stop="119206" i_length="1382">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119205" g_stop="119099" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="462" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119098" i_stop="118640" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118639" g_stop="118591" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="511" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118590" i_stop="118416" i_length="175">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118415" g_stop="118303" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="624" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E308004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121448" e_stop="121190"/>
          <exon e_start="120683" e_stop="120588"/>
          <exon e_start="119205" e_stop="119099"/>
          <exon e_start="118639" e_stop="118591"/>
          <exon e_start="118415" e_stop="118303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAGGTATGTACTGGACTCCTTTTTTTTCCTTTTGAATTTAATTTGTCAATTGTTGTTATCTGGGGTTTTAATGTTAGAGAAGGTAAATGGTTTTGTTTTTTGATCTTTGAGTTTTTTGAGCTATTTGAATGTGATTTTTAGTTAATTGGGGGTTGTAAAAATCATTGCTTTTGTATATTTGGGTAGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTTTTCAGCTGTTTGAATGTGAATTTGAGTTAATTGGGGGGTGCGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTCTTTGAGCTGTTTGAATGTGAATTTGAGTTAATCGGAGATTTTTTAGGTGCTATTGCTGCTGTATTTGTGTGTAAATTGGATCTTTGAGGTTTTTGAGCTATTTGAATGTGAATTGAGTTGATTGGGGGTTGTAAAAATCTAAGCTTTTGTATCTTTTGATGTTCTTAAGGTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAGGTTTGTGCTCGTCGTTGTCTCTTATATTAGAAATGATAAGAACTGCTACCTTAAGTCGAATTGCTTCCTTCCGATTGAACAAATGCAAAAATGATATATTAAGATTAATGTGATCTTCTAATTGAATTATTTCATAGCTCTAGTAATGATCTGTAGATCCCTTATAACACGTCGATGGTGTCCTATATATAACAGATAAGAACACTTCTTGTTCACAACTTAACAACCATGAGAATTTCTATTTGCCTTTTGTGTGAACAAAACACCACTCAGATCAACATATCTAAAAAATGGACTGCGAATCATTAATGCTTATCCGATCAAACGAAGCATAAATGACAGACCTGAGTTTTCCTCATTTTCAACGATAATTCATTTCAGGTCCTGCTCCTCACTACTAGTTGACTTGGATTTAAGACAGATTGTCAAAATCTAGCGATAACTTTTACCCTGATTTTACAACAGAACAATGGATTCTATGTTTTTCCAGTTATAGCATATCTCTGGTAAAAGAAGTCCGGCTGTTGCTTTGAATTCTTACCAATCTTCTCAGGCAAAGTAGAAGTATTAGCTTTTATTGACTGCCCCTTATAATTTTTACTTATCTTTGTGTTCTTCTAGATTCTTAAGTAAGGTATTTGTTAGCATAAAAATAGGGGTGCTGTACAGTTGCATTATACATTACCTTATCCAAACAAATATGTGACTACGAAAACATATATCCAACCAATATACCCAGGTTGGATCTTTTTTGAGCTCCAACATAGCAACAAAAGAATATGCATTCTGGATTTAGGAATTTTCTTGTCTTGGATGCTTAATTATTTCACACAAAGCTGTACCTTAGTGCATGAAGAGCTATTTTGTTGTATTTTTTCTGTCTTCATGTTCCTTCAGCTTTCACTCAGATAGGCTGCCCATAGGGCTTCTGTTTCCTCCAATTTCCATTTTCTCCAGTGTAGGATGTCCAACATGTTGCTTTTGGTGCTTTTCCTTGTATTTCTGCTTTCCATATTTGATGTAGTCATTTTCTAAATGGACTTCCACATTCTGTACATTGTGCACTCTAAGCTCATCGCATCTTTGTGGGAAATTTCCTTTGGCAGTGAGTATAATTTGGTGATTTAGAGCAGAGTTGCTGTCGACTTTTTCATGAAGGTCTCTAGGGCTAGTTATATTTTCTTCTTATTTGAACAAGTGTTAATTTGAGGAGCTGATAATTGGGCTTTCATCTTGTTCCTTCTTTGGATGAATATACTTTTTTTTGGTCTTCTGTTGAACCTATTTAGATGGTAACCATAGAAAAAGAGGCAAAGACAAAAAAGAAGTCCGAATCCATATTACTGCCACACTTATTTTTCCTTGAATTATTTGGGCAACAGGTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCGGTAAGCATTGTCTTGTTCAATTTCTATTTCTGTGGATTGCAATTAGTTGAACTTCCTTCATGAAATGAATCATCAAAATTGAATGAGATAAATATTCAGATATGGTCTCTTATGGAACTGCATCCTTTCTTATTGAATAATGCAATGATTAGGGTTACCTTGCACACCACCACAAACATGTTCTTATTGCTGATGAAGAATAAAAATGAATAAGGCTTTCCTTTTGGGCGGGGGCAGGTGTTGCTGTATTGAACTCCTGGATAGCTTTTTAATCATTTAATGGAAATTAAAAGTTGATTTACCAGTGTTAGCTGTAATCTTATCGGCTTTGTTTACAACTGACTCCATGTTGGCATATATTTTCTGTGCATGCTGAATGCTGAATCCACCCACCCTTTTTTCTTCTGAATTTCCACATAAGTAACTGTTTTGAGAAAAAAACATTCACATCTTCTGCAGGTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATGGTAAACTTTTACTCTATTAGTTTTCTGGACTAATAGCTTCCATCACTTCTTTTTTAAATGTTTGTTTGAATGCCATCATATTTTTTAATCCTTTACTATTGGAAGTTGTGATGAAGACAATAGGAAACTTAGCACTTAGCTTTACCAAAAGAATTTTCTTGCGCGTTAAATGCAGTGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG</genome_strand>
        <mrna_strand>TCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG...............................................................................................................................................................................TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551719" ref_strand="+" ref_description="SGN-E551719 [cTSB-1-J9]">
      <seq>ataaagcaaaccctttggcaacaatgctcagtgctgctatgcttctgaagtatggcctaggtgaggagaaggctgctcagagaattgaagcagctgttttagacaccttaaatcgaggattccgtactggtgacattcactcagcaggacataaattggtcggatgcaaggaaatgggtgaagaagtgctcaagtctatcgacagcaaaactcctgctgctgtttaattttcttaagaggaggcttcattgagacctcaacaaatgatcattttggcagatgcatttgcagtcagtatataatttgccatttatgcaactgtttgaaggattcaaaattgctgagtgttgtatcgtagcctaaacgtctcgattcttttctctgatgtttttgagacattatcctgttgtaacatgaagtgaaccttggagcaacagtaaagttgttttaacgagttcaagttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124268" stop="53411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123968" g_stop="123817" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123583" g_stop="123275" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="461" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123274" i_stop="122578" i_length="697">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122577" g_stop="122555" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="484" r_length="23" r_score="0.826"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E551719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123968" e_stop="123817"/>
          <exon e_start="123583" e_stop="123275"/>
          <exon e_start="122577" e_stop="122555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTGTAACCAGATGTTGTTGTGGTTGCTACATTGTCTCTATCTTTGACCACATTTCCTATAATGATCATTTCTGTAACTTCATTGAGTGCGATTATATTTTTTGAAGAGTCCGAGCAAGGATTTTATTCTAAGTCCTTTTCATTCCTCTCTTTACATCTCAACCAAACATATAAGTTCAGTATCTTTGAGATTTTATATTTTATCCCAAGTTGACACATTAATTTAATCATATTATAGTTAAGTGAATATTAAGATGATGTATACACTCCTATTAATTAATCATGATTAATAATAAAGGTGCATATAAAAGATATAATAAGTATTATTTTGTTTTGATGACGAGGAGAATCACCAATGTTGTGATGAGATAAATAATATTATTTCACTTTTAATCAGAAACTTTGAATTCAAATTTTGAACATATAAAATTTTTATTATGAAATACTTTTTCTTTTAATATGTCATATGCGATAGACATCTGTATTTATCATCTCAATATTGATATCGAACAATGAGAAACTTAAAAAGAAACTAAAAAAAAGA</genome_strand>
        <mrna_strand>ATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747387" ref_strand="+" ref_description="SGN-E747387 [GI|47104575]">
      <seq>ctcacattcttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttattttggcaaaccaagaggattcagcactgataaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgaaagaattgctcgtattgcatttgaaactgcaaggaagcgaagaggaaaactatgtagcgtggataaagcaaatgtattggaggcctctatgctttggaggaagatagttacagcgttagcctcagagtatcctgatgtagagctctctcacatgtatgttgataatgcagccatgcaacttgttcgcaacccaaaacagtttgatacaattgtgacaaacaacatatttggtgacatcctgtccgatgaagcatcaatgattacaggaagtatcgggatgcttccatctgccagtcttggtgcagcgggacctggattatttgaacctatacatggttctgctcctgatattgctgggcaggataaagcaaaccctttggcaacaatgctcagtgctgctatgcttctgaagtatggcctaggtgaggagaaggctgctcagagaattgaagcagctgttttagacaccttaaatcgaggattccgtactggtgacattcactcagcaggacataaattggtcggatgcaaggaaatgggtgaagaagtgctcaagtctatcgacagcaaaactcctgctgctgtttaattttcttaagaggaggcttcattgagacctcaacaaatgatcattttggcagatgcatttgcagtcagtatataatttgccatttatgcaactgtttgaaggattcaaaattgctgagtgttgtatcgtagcctaaacgtctcgattcttttctctgatgtttttgagacattatcctgttgtaacatgaagtgaaccttggagcaacagtaaagttgttttaacgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131318" stop="53408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131018" g_stop="130783" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="366" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="478" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="554" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126074" g_stop="125986" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="643" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125403" g_stop="125317" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="730" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="125316" i_stop="124595" i_length="722">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124594" g_stop="124478" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="847" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="124477" i_stop="124372" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124371" g_stop="124264" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="848" r_stop="955" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="124263" i_stop="124162" i_length="102">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="124161" g_stop="124108" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1009" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="124107" i_stop="123970" i_length="138">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="123969" g_stop="123817" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1010" r_stop="1162" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="123583" g_stop="123282" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1163" r_stop="1464" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="123281" i_stop="122582" i_length="700">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="122581" g_stop="122558" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1465" r_stop="1488" r_length="24" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E747387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131018" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126192"/>
          <exon e_start="126074" e_stop="125986"/>
          <exon e_start="125403" e_stop="125317"/>
          <exon e_start="124594" e_stop="124478"/>
          <exon e_start="124371" e_stop="124264"/>
          <exon e_start="124161" e_stop="124108"/>
          <exon e_start="123969" e_stop="123817"/>
          <exon e_start="123583" e_stop="123282"/>
          <exon e_start="122581" e_stop="122558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAGGTAAAAGCTAATTTTTCTCTCCCTGTTCCTCAACCCTTCTTTTCTTCTCCTCAGTATCTGCCTTCAACTTTCTTGTCTAATTCTGTTTCTTTTATAAAACAAGTAAATCTATTAATAGTTGCATCAACGTGGTGCCTCGATAGTCTTCACCACACATATGATTTCTCTTTAACCTTCTGGGGAAAAAAAGAATCTAGTCAACTACCCAACTATCTAGCCAAAAAATTATCTATTCTATATACCAGAAGTAGACTAGAATTAGAAAGGAGCTCGTTATTCTCCAAGAATATCCTTCAATTGGTTTATGTAATCTTTCTTTGCAAATCATCCAGCAAAAGCCATAGTTGAGTCATTCTCACGCTACTCTTCTTCAATCATGAATCTTCACCAATCTCATGCTAGCCAAGGGTGTTTGCTGCTGAATTGTTAATGAGAAATACAACACAAATAAGGGAAAAACAAAAATCCACGAGTCGTAACTCGTGTGCAAGTGTAAGATCAATTAATTAACAAAATCTGCTCTACTTTAAGCAAGTTTCTTGTTTATCCCTTCAGCAGTTGACGTTTTAAAAGAGTTGTACTAAAGACTAAATTTTTCTTTGTTCACTCTAATTTGCCGCTACTTAAAACTGCAACTGGGAGACCATAAAGATAGCATTGAGATTGAGTTCATTAAGGGTAATTTCTTGTTCTATAGTTCGTGATTTTGAGATATTTGCCAGGCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAGGTTTCATTTACCTTTGGTTTTACAATTTTTTGTTTCTCAAGTTTGGTCTTAGCACATGATGACACACTCGTCTATGGAGTTGATCCTCGAAACAATCATAATGCAGTTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCGGTATTTCTGGATTATCTCTTTTCCTTGGAAATATTGGTTCTTTTTCTAACTCACTACAAATTCTTTAATCTCCTTTTACTTTTGGACACATGTTGCCTCTAGGGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAGGTTGGCTCTAGTATTTCATTCTCTCTCTTTTTCTTTTCCCCCTTCTCCTTTAAGTACGGACAGCCCGCCAACCTCCAACCTCCCATCCGGAAATTCGCATATGTTCACATGCTTAAGCACTAACTTTTGAACATACAGGATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTGTAACCAGATGTTGTTGTGGTTGCTACATTGTCTCTATCTTTGACCACATTTCCTATAATGATCATTTCTGTAACTTCATTGAGTGCGATTATATTTTTTGAAGAGTCCGAGCAAGGATTTTATTCTAAGTCCTTTTCATTCCTCTCTTTACATCTCAACCAAACATATAAGTTCAGTATCTTTGAGATTTTATATTTTATCCCAAGTTGACACATTAATTTAATCATATTATAGTTAAGTGAATATTAAGATGATGTATACACTCCTATTAATTAATCATGATTAATAATAAAGGTGCATATAAAAGATATAATAAGTATTATTTTGTTTTGATGACGAGGAGAATCACCAATGTTGTGATGAGATAAATAATATTATTTCACTTTTAATCAGAAACTTTGAATTCAAATTTTGAACATATAAAATTTTTATTATGAAATACTTTTTCTTTTAATATGTCATATGCGATAGACATCTGTATTTATCATCTCAATATTGATATCGAACAATGAGAAACTTAAAAAGAAACTAAAAAAA</genome_strand>
        <mrna_strand>CTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG..........................................................................................................TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG......................................................................................................GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG..........................................................................................................................................GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415286" ref_strand="-" ref_description="SGN-E415286 [STM-21-G5]">
      <seq>gacataaattggtcggatgcaaggaaatgggtgaagaagtgctcaagtctatcgacagcaaaactcctgctgctgtttaatttttttaagaggaggcttccttgagccctcaacaaatgatctttttggcagatgcatttgcagtcggtataatttttgccatttatgcaactgtttgaaggattcaaaattgctgagtgttgtatcgtagcctaaacgtctctattcttttgtctgatgtttttgagacattatcatgttgtaacatgaagtgaaccttgtagcaacaataaagttgtcttcacgagttcaagttgtggaatcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="123886" stop="53410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123821" g_stop="123817" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123583" g_stop="123265" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="324" r_length="319" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123264" i_stop="122582" i_length="683">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122581" g_stop="122558" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="348" r_length="24" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E415286" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415286" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="123821" e_stop="123817"/>
          <exon e_start="123583" e_stop="123265"/>
          <exon e_start="122581" e_stop="122558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTGTAACCAGATGTTGTTGTGGTTGCTACATTGTCTCTATCTTTGACCACATTTCCTATAATGATCATTTCTGTAACTTCATTGAGTGCGATTATATTTTTTGAAGAGTCCGAGCAAGGATTTTATTCTAAGTCCTTTTCATTCCTCTCTTTACATCTCAACCAAACATATAAGTTCAGTATCTTTGAGATTTTATATTTTATCCCAAGTTGACACATTAATTTAATCATATTATAGTTAAGTGAATATTAAGATGATGTATACACTCCTATTAATTAATCATGATTAATAATAAAGGTGCATATAAAAGATATAATAAGTATTATTTTGTTTTGATGACGAGGAGAATCACCAATGTTGTGATGAGATAAATAATATTATTTCACTTTTAATCAGAAACTTTGAATTCAAATTTTGAACATATAAAATTTTTATTATGAAATACTTTTTCTTTTAATATGTCATATGCGATAGACATCTGTATTTATCATCTCAATATTGATATCGAACAATGAGAAACTTAAAAAGAAACTAAAAAAA</genome_strand>
        <mrna_strand>GACAT.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTTTTAAGAGGAGGCTTCCTTGAGCCCTCAACAAATGATCTTTTTGGCAGATGCATTTGCAGTCGGTATAATTTTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCTATTCTTTTGTCTGATGTTTTTGAGACATTATCATGTTGTAACATGAAGTGAACCTTGTAGCAACAATAAAGTTGTCTTCACGAGTTCAAGTTGTGGAATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554990" ref_strand="+" ref_description="SGN-E554990 [cTSC-6-B11]">
      <seq>ataaagcaaaccctttggcaacaatgctcagtgctgctatgcttctgaagtatggcctaggtgaggagaaggctgctcagagaattgaagcagctgttttagacaccttaaatcgaggattccgtactggtgacattcactcagcaggacataaattggtcggatgcaaggaaatgggtgaagaagtgctcaagtctatcgacagcaaaactcctgctgctgtttaattttcttaagaggaggcttcattgagacctcaacaaatgatcattttggcagatgcatttgcagtcagtatataatttgccatttatgcaactgtttgaaggattcaaaattgctgagtgttgtatcgtagcctaaacgtctcgattcttttctctgatgtttttgagacattatcctgttgtaacatgaagtgaaccttggagcaacagtaaagttgttttaacgagttcaagttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124268" stop="53412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123968" g_stop="123817" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123583" g_stop="123273" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="463" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123272" i_stop="122582" i_length="691">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122581" g_stop="122559" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="486" r_length="23" r_score="0.739"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E554990" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123968" e_stop="123817"/>
          <exon e_start="123583" e_stop="123273"/>
          <exon e_start="122581" e_stop="122559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTGTAACCAGATGTTGTTGTGGTTGCTACATTGTCTCTATCTTTGACCACATTTCCTATAATGATCATTTCTGTAACTTCATTGAGTGCGATTATATTTTTTGAAGAGTCCGAGCAAGGATTTTATTCTAAGTCCTTTTCATTCCTCTCTTTACATCTCAACCAAACATATAAGTTCAGTATCTTTGAGATTTTATATTTTATCCCAAGTTGACACATTAATTTAATCATATTATAGTTAAGTGAATATTAAGATGATGTATACACTCCTATTAATTAATCATGATTAATAATAAAGGTGCATATAAAAGATATAATAAGTATTATTTTGTTTTGATGACGAGGAGAATCACCAATGTTGTGATGAGATAAATAATATTATTTCACTTTTAATCAGAAACTTTGAATTCAAATTTTGAACATATAAAATTTTTATTATGAAATACTTTTTCTTTTAATATGTCATATGCGATAGACATCTGTATTTATCATCTCAATATTGATATCGAACAATGAGAAACTTAAAAAGAAACTAAAAAA</genome_strand>
        <mrna_strand>ATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556508" ref_strand="+" ref_description="SGN-E556508 [cTSD-3-L15]">
      <seq>ataaagcaaaccctttggcaacaatgctcagtgctgctatgcttctgaagtatggcctaggtgaggagaaggctgctcagagaattgaagcagctgttttagacaccttaaatcgaggattccgtactggtgacattcactcagcaggacataaattggtcggatgcaaggaaatgggtgaagaagtgctcaagtctatcgacagcaaaactcctgctgctgtttaattttcttaagaggaggcttcattgagacctcaacaaatgatcattttggcagatgcatttgcagtcagtatataatttgccatttatgcaactgtttgaaggattcaaaattgctgagtgttgtatcgtagcctaaacgtctcgattcttttctctgatgtttttgagacattatcctgttgtaacatgaagtgaaccttggagcaacagtaaagttgttttaacgagttcaagttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124268" stop="53412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123968" g_stop="123817" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123583" g_stop="123273" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="463" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123272" i_stop="122582" i_length="691">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122581" g_stop="122559" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="486" r_length="23" r_score="0.739"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E556508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123968" e_stop="123817"/>
          <exon e_start="123583" e_stop="123273"/>
          <exon e_start="122581" e_stop="122559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTGTAACCAGATGTTGTTGTGGTTGCTACATTGTCTCTATCTTTGACCACATTTCCTATAATGATCATTTCTGTAACTTCATTGAGTGCGATTATATTTTTTGAAGAGTCCGAGCAAGGATTTTATTCTAAGTCCTTTTCATTCCTCTCTTTACATCTCAACCAAACATATAAGTTCAGTATCTTTGAGATTTTATATTTTATCCCAAGTTGACACATTAATTTAATCATATTATAGTTAAGTGAATATTAAGATGATGTATACACTCCTATTAATTAATCATGATTAATAATAAAGGTGCATATAAAAGATATAATAAGTATTATTTTGTTTTGATGACGAGGAGAATCACCAATGTTGTGATGAGATAAATAATATTATTTCACTTTTAATCAGAAACTTTGAATTCAAATTTTGAACATATAAAATTTTTATTATGAAATACTTTTTCTTTTAATATGTCATATGCGATAGACATCTGTATTTATCATCTCAATATTGATATCGAACAATGAGAAACTTAAAAAGAAACTAAAAAA</genome_strand>
        <mrna_strand>ATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341910" ref_strand="+" ref_description="SGN-E341910 [cTOF-9-G12]">
      <seq>ctgaagcagctgttttaagacaccttaaaccgaggactccgtacctggtgccacttcacctcagcaggacacaaattggtcggatgcaaggaaatgggtgaagaagtgcctcaagtctatcgacagcaaaactcctgctgctgtttaattttcttaagaggaggcttcattgagacctcaacaaatgatcattttggcagatgcatttgcagtcagtatataatttgccatttatgccaactgtttgaaggattcaaaattgctgagtgttgtatcgtagcctaaacgtctcgattcttttctctgatgtttttgagaccattatcctgttgtaacatgaagtgaaccttggagcaacagtaaagttgttttaacgagttcaagttatggaatcaactggtgttgcttgcattaggatagactgtctactctacttctccttagaccctatgtgaacacgaaatgctctgtgcatcgggctgtcctttttattttgttgtaacatggaaaaagcaatgaaaataagcatttttgcaccttgggaaaactggaatggaacaattgaaccagatgttgnttgtgggttgctacattgtctctatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124183" stop="122755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123884" g_stop="123817" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.809"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233">
            <donor d_prob="0.999" d_score="0.79"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123583" g_stop="123055" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="605" r_length="533" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E341910" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123884" e_stop="123817"/>
          <exon e_start="123583" e_stop="123055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGCAGCTGTTTT-AGACACCTTAAATCGAGGATTCCGTA-CTGGTGACA-TTCA-CTCAGCAGGACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTG-CTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATG-CAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGA-CATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTGTAACCAGATGTTG-TTGT-GGTTGCTACATTGTCTCTATCTT</genome_strand>
        <mrna_strand>CTGAAGCAGCTGTTTTAAGACACCTTAAACCGAGGACTCCGTACCTGGTGCCACTTCACCTCAGCAGGACAC.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACCATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTG-AACCAGATGTTGNTTGTGGGTTGCTACATTGTCTCTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349505" ref_strand="+" ref_description="SGN-E349505 [cTOS-1-M7]">
      <seq>aaattgctgagtgttgtatcgtagcctaaacgtctcgattcttttctctgatgtttttgagacattatcctggtgtaacatgaagtgaaccttggagcaacagtaaagttgttttaacgagttcaagttatggaatcaactggtgttgcttgcattaggatagactggctactctacttctccttagaccctatgtgaacacgaaatgctctgtgcatcgggctgtcctttttattttgttgtaacatggaaaaagcaatgaaaataagcatttttgcaccttgggaaacacattgcttctcccaaataaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="123701" stop="122808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123401" g_stop="123113" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E349505" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123401" e_stop="123113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAA</genome_strand>
        <mrna_strand>AAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGGTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGGCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313385" ref_strand="+" ref_description="SGN-E313385 [cTOA-13-G13]">
      <seq>aagcatcaatgattacaggaagtatcgttatgcttccatctgccagtcttggtgcagcgggacctggattatttgaacctatacatggttctgctcctgatattgctgggcaggataaagcaaaccctttggcaacaatgctcagtgctgctatgcttctgaagtatggcctangtgaggagaaggctgctcanagaattgaagcagctgttttagacaccttaaatcgaggattccgtactggtgacattcactcagcaggacataaattggtcggatgcaaggaaatgggtgaagaagtgctcaagtctatcgacagcaaaactcctgctgctgtttaattttcttaagaggaggcttcattgagacctcaacaaatgatcattttggcagatgcatttgcagtcagtatataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124622" stop="123134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124322" g_stop="124264" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124263" i_stop="124162" i_length="102">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124161" g_stop="124108" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="113" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124107" i_stop="123970" i_length="138">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123969" g_stop="123817" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="266" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123583" g_stop="123434" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="416" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E313385" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124322" e_stop="124264"/>
          <exon e_start="124161" e_stop="124108"/>
          <exon e_start="123969" e_stop="123817"/>
          <exon e_start="123583" e_stop="123434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCGGTATTTCTGGATTATCTCTTTTCCTTGGAAATATTGGTTCTTTTTCTAACTCACTACAAATTCTTTAATCTCCTTTTACTTTTGGACACATGTTGCCTCTAGGGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAGGTTGGCTCTAGTATTTCATTCTCTCTCTTTTTCTTTTCCCCCTTCTCCTTTAAGTACGGACAGCCCGCCAACCTCCAACCTCCCATCCGGAAATTCGCATATGTTCACATGCTTAAGCACTAACTTTTGAACATACAGGATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAA</genome_strand>
        <mrna_strand>AAGCATCAATGATTACAGGAAGTATCGTTATGCTTCCATCTGCCAGTCTTGGTGCAGCG......................................................................................................GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG..........................................................................................................................................GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTANGTGAGGAGAAGGCTGCTCANAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413473" ref_strand="+" ref_description="SGN-E413473 [STM-17-P10]">
      <seq>gcaaaccaagaggattcagcactaatgaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgacagaattgctcgtattgcatttgaaactgcaaggaagcgtagaggaaaactatgtagcgtggataaagcaaatgttttggaggcctctatgctttggaggaagatagttacagcattagcctcagagtatcctgatgtagagctctctcacatgtatgttgataatgcagccatgcaacttgttcgcaacccaaaacagtttgatacaattgtgacaaacaacatatttggtgacatcctgtctgatgaagcatcaatgattacaggaagtatcgggatgcttccatctgccagtcttggtgcagcgggacctggattgtttgaacctatacatggttctgctcctgatattgctgggcaggataaagcaaaccctttggcaacaatgctcagtgctgctatgcttctgaagtatggcctangtgaggagaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126362" stop="123595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126062" g_stop="125986" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125403" g_stop="125317" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="164" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125316" i_stop="124595" i_length="722">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124594" g_stop="124478" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="281" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124477" i_stop="124372" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124371" g_stop="124264" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="389" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124263" i_stop="124162" i_length="102">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124161" g_stop="124108" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="443" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124107" i_stop="123970" i_length="138">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123969" g_stop="123895" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="518" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E413473" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126062" e_stop="125986"/>
          <exon e_start="125403" e_stop="125317"/>
          <exon e_start="124594" e_stop="124478"/>
          <exon e_start="124371" e_stop="124264"/>
          <exon e_start="124161" e_stop="124108"/>
          <exon e_start="123969" e_stop="123895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAGGTAAAAGCTAATTTTTCTCTCCCTGTTCCTCAACCCTTCTTTTCTTCTCCTCAGTATCTGCCTTCAACTTTCTTGTCTAATTCTGTTTCTTTTATAAAACAAGTAAATCTATTAATAGTTGCATCAACGTGGTGCCTCGATAGTCTTCACCACACATATGATTTCTCTTTAACCTTCTGGGGAAAAAAAGAATCTAGTCAACTACCCAACTATCTAGCCAAAAAATTATCTATTCTATATACCAGAAGTAGACTAGAATTAGAAAGGAGCTCGTTATTCTCCAAGAATATCCTTCAATTGGTTTATGTAATCTTTCTTTGCAAATCATCCAGCAAAAGCCATAGTTGAGTCATTCTCACGCTACTCTTCTTCAATCATGAATCTTCACCAATCTCATGCTAGCCAAGGGTGTTTGCTGCTGAATTGTTAATGAGAAATACAACACAAATAAGGGAAAAACAAAAATCCACGAGTCGTAACTCGTGTGCAAGTGTAAGATCAATTAATTAACAAAATCTGCTCTACTTTAAGCAAGTTTCTTGTTTATCCCTTCAGCAGTTGACGTTTTAAAAGAGTTGTACTAAAGACTAAATTTTTCTTTGTTCACTCTAATTTGCCGCTACTTAAAACTGCAACTGGGAGACCATAAAGATAGCATTGAGATTGAGTTCATTAAGGGTAATTTCTTGTTCTATAGTTCGTGATTTTGAGATATTTGCCAGGCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAGGTTTCATTTACCTTTGGTTTTACAATTTTTTGTTTCTCAAGTTTGGTCTTAGCACATGATGACACACTCGTCTATGGAGTTGATCCTCGAAACAATCATAATGCAGTTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCGGTATTTCTGGATTATCTCTTTTCCTTGGAAATATTGGTTCTTTTTCTAACTCACTACAAATTCTTTAATCTCCTTTTACTTTTGGACACATGTTGCCTCTAGGGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAGGTTGGCTCTAGTATTTCATTCTCTCTCTTTTTCTTTTCCCCCTTCTCCTTTAAGTACGGACAGCCCGCCAACCTCCAACCTCCCATCCGGAAATTCGCATATGTTCACATGCTTAAGCACTAACTTTTGAACATACAGGATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCT</genome_strand>
        <mrna_strand>GCAAACCAAGAGGATTCAGCACTAATGAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGTAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTTTTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTATGCTTTGGAGGAAGATAGTTACAGCATTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG..........................................................................................................TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCTGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG......................................................................................................GGACCTGGATTGTTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG..........................................................................................................................................GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTANGTGAGGAGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250139" ref_strand="+" ref_description="SGN-E250139 [cLEG-11-C1]">
      <seq>catttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttattttggcaaaccaagaggattcagcactgataaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgaaagaattgctcgtattgcatttgaaactgcaaggaagcgaagaggaaaactatgtagcgtggataaagcaaatgtattggaggcctctatgctttggaggaagatagttacagcgttagcctcagagtatcctgatgtagagctctctcacatgtatgttgataatgcagccatgcaacttgttcgcaacccaaaacagtttgatacaattgtgacaaacaacatatttggtgacatcctgtccgatgaagcatcaatgattacaggaagtatcgggatgcttccatctgccagtcttggtgcagcgggacctggattatttgaacctatacatggttctgctcctgatattgctgggcaggataaagcaaaccctttggcaacaatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128808" stop="123640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128508" g_stop="128422" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126267" g_stop="126192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="163" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126074" g_stop="125986" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="252" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125403" g_stop="125317" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="339" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125316" i_stop="124595" i_length="722">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124594" g_stop="124478" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="456" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124477" i_stop="124372" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124371" g_stop="124264" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="564" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124263" i_stop="124162" i_length="102">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124161" g_stop="124108" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="618" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="124107" i_stop="123970" i_length="138">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="123969" g_stop="123940" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="648" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E250139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128508" e_stop="128422"/>
          <exon e_start="126267" e_stop="126192"/>
          <exon e_start="126074" e_stop="125986"/>
          <exon e_start="125403" e_stop="125317"/>
          <exon e_start="124594" e_stop="124478"/>
          <exon e_start="124371" e_stop="124264"/>
          <exon e_start="124161" e_stop="124108"/>
          <exon e_start="123969" e_stop="123940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAGGTAAAAGCTAATTTTTCTCTCCCTGTTCCTCAACCCTTCTTTTCTTCTCCTCAGTATCTGCCTTCAACTTTCTTGTCTAATTCTGTTTCTTTTATAAAACAAGTAAATCTATTAATAGTTGCATCAACGTGGTGCCTCGATAGTCTTCACCACACATATGATTTCTCTTTAACCTTCTGGGGAAAAAAAGAATCTAGTCAACTACCCAACTATCTAGCCAAAAAATTATCTATTCTATATACCAGAAGTAGACTAGAATTAGAAAGGAGCTCGTTATTCTCCAAGAATATCCTTCAATTGGTTTATGTAATCTTTCTTTGCAAATCATCCAGCAAAAGCCATAGTTGAGTCATTCTCACGCTACTCTTCTTCAATCATGAATCTTCACCAATCTCATGCTAGCCAAGGGTGTTTGCTGCTGAATTGTTAATGAGAAATACAACACAAATAAGGGAAAAACAAAAATCCACGAGTCGTAACTCGTGTGCAAGTGTAAGATCAATTAATTAACAAAATCTGCTCTACTTTAAGCAAGTTTCTTGTTTATCCCTTCAGCAGTTGACGTTTTAAAAGAGTTGTACTAAAGACTAAATTTTTCTTTGTTCACTCTAATTTGCCGCTACTTAAAACTGCAACTGGGAGACCATAAAGATAGCATTGAGATTGAGTTCATTAAGGGTAATTTCTTGTTCTATAGTTCGTGATTTTGAGATATTTGCCAGGCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAGGTTTCATTTACCTTTGGTTTTACAATTTTTTGTTTCTCAAGTTTGGTCTTAGCACATGATGACACACTCGTCTATGGAGTTGATCCTCGAAACAATCATAATGCAGTTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCGGTATTTCTGGATTATCTCTTTTCCTTGGAAATATTGGTTCTTTTTCTAACTCACTACAAATTCTTTAATCTCCTTTTACTTTTGGACACATGTTGCCTCTAGGGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAGGTTGGCTCTAGTATTTCATTCTCTCTCTTTTTCTTTTCCCCCTTCTCCTTTAAGTACGGACAGCCCGCCAACCTCCAACCTCCCATCCGGAAATTCGCATATGTTCACATGCTTAAGCACTAACTTTTGAACATACAGGATAAAGCAAACCCTTTGGCAACAATGCTC</genome_strand>
        <mrna_strand>CATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG..........................................................................................................TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG......................................................................................................GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG..........................................................................................................................................GATAAAGCAAACCCTTTGGCAACAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324034" ref_strand="+" ref_description="SGN-E324034 [cTOC-3-E9]">
      <seq>actgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttattttggcaaaccaagaggattcagcactgataaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgaaagaattgctcgtattgcatttgaaactgcaaggaagcgaagaggaaaactatgtagcgtggataaagcaaatgtattggaggcctctatgctttggaggaagatagttacagcgttagcctcagagtatcctgatgtagagctctctcacatgtatgttgataatgcagccatgcaacttgttcgcaacccaaaacagtttgatacaattgtgacaaacaacatatttggtgacatcctgtccgatgaagcatcaatgattacaggaagtatcgggatgcttccatctgccagtcttggtgcagcgggacctggattattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126570" stop="123961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126267" g_stop="126192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="91" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126074" g_stop="125986" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="180" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125403" g_stop="125317" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="267" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125316" i_stop="124595" i_length="722">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124594" g_stop="124478" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="384" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124477" i_stop="124372" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124371" g_stop="124264" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="492" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124263" i_stop="124162" i_length="102">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124161" g_stop="124147" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="507" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E324034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126267" e_stop="126192"/>
          <exon e_start="126074" e_stop="125986"/>
          <exon e_start="125403" e_stop="125317"/>
          <exon e_start="124594" e_stop="124478"/>
          <exon e_start="124371" e_stop="124264"/>
          <exon e_start="124161" e_stop="124147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAGGTAAAAGCTAATTTTTCTCTCCCTGTTCCTCAACCCTTCTTTTCTTCTCCTCAGTATCTGCCTTCAACTTTCTTGTCTAATTCTGTTTCTTTTATAAAACAAGTAAATCTATTAATAGTTGCATCAACGTGGTGCCTCGATAGTCTTCACCACACATATGATTTCTCTTTAACCTTCTGGGGAAAAAAAGAATCTAGTCAACTACCCAACTATCTAGCCAAAAAATTATCTATTCTATATACCAGAAGTAGACTAGAATTAGAAAGGAGCTCGTTATTCTCCAAGAATATCCTTCAATTGGTTTATGTAATCTTTCTTTGCAAATCATCCAGCAAAAGCCATAGTTGAGTCATTCTCACGCTACTCTTCTTCAATCATGAATCTTCACCAATCTCATGCTAGCCAAGGGTGTTTGCTGCTGAATTGTTAATGAGAAATACAACACAAATAAGGGAAAAACAAAAATCCACGAGTCGTAACTCGTGTGCAAGTGTAAGATCAATTAATTAACAAAATCTGCTCTACTTTAAGCAAGTTTCTTGTTTATCCCTTCAGCAGTTGACGTTTTAAAAGAGTTGTACTAAAGACTAAATTTTTCTTTGTTCACTCTAATTTGCCGCTACTTAAAACTGCAACTGGGAGACCATAAAGATAGCATTGAGATTGAGTTCATTAAGGGTAATTTCTTGTTCTATAGTTCGTGATTTTGAGATATTTGCCAGGCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAGGTTTCATTTACCTTTGGTTTTACAATTTTTTGTTTCTCAAGTTTGGTCTTAGCACATGATGACACACTCGTCTATGGAGTTGATCCTCGAAACAATCATAATGCAGTTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCGGTATTTCTGGATTATCTCTTTTCCTTGGAAATATTGGTTCTTTTTCTAACTCACTACAAATTCTTTAATCTCCTTTTACTTTTGGACACATGTTGCCTCTAGGGACCTGGATTATTT</genome_strand>
        <mrna_strand>TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG..........................................................................................................TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG......................................................................................................GGACCTGGATTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707862" ref_strand="+" ref_description="SGN-E707862 [FA34AG04]">
      <seq>gctgtcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttattttggcaaaccaagaggattcagcactgataaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgaaagaattgctcgtattgcatttgaaactgcaaggaagcgaagaggaaaactatgtagcgtggataaagcaaatgtattggaggcctctatgctttggagtaagatagttacagcgttagcctcagagtatcctgatgtagagctctctcacatgtatgttgataatgcagccatgcaacttgttcgcaacccaaaacagtttgatacaattgtgacaaacaacatatttggtgacatcctgtccgatgaagcatcaatgaatacaggaagtatcgggatgcttccatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131299" stop="123981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131000" g_stop="130783" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="348" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="460" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="536" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126074" g_stop="125986" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="625" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125403" g_stop="125317" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="712" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="125316" i_stop="124595" i_length="722">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124594" g_stop="124478" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="829" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="124477" i_stop="124372" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124371" g_stop="124281" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="920" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E707862" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131000" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126192"/>
          <exon e_start="126074" e_stop="125986"/>
          <exon e_start="125403" e_stop="125317"/>
          <exon e_start="124594" e_stop="124478"/>
          <exon e_start="124371" e_stop="124281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAGGTAAAAGCTAATTTTTCTCTCCCTGTTCCTCAACCCTTCTTTTCTTCTCCTCAGTATCTGCCTTCAACTTTCTTGTCTAATTCTGTTTCTTTTATAAAACAAGTAAATCTATTAATAGTTGCATCAACGTGGTGCCTCGATAGTCTTCACCACACATATGATTTCTCTTTAACCTTCTGGGGAAAAAAAGAATCTAGTCAACTACCCAACTATCTAGCCAAAAAATTATCTATTCTATATACCAGAAGTAGACTAGAATTAGAAAGGAGCTCGTTATTCTCCAAGAATATCCTTCAATTGGTTTATGTAATCTTTCTTTGCAAATCATCCAGCAAAAGCCATAGTTGAGTCATTCTCACGCTACTCTTCTTCAATCATGAATCTTCACCAATCTCATGCTAGCCAAGGGTGTTTGCTGCTGAATTGTTAATGAGAAATACAACACAAATAAGGGAAAAACAAAAATCCACGAGTCGTAACTCGTGTGCAAGTGTAAGATCAATTAATTAACAAAATCTGCTCTACTTTAAGCAAGTTTCTTGTTTATCCCTTCAGCAGTTGACGTTTTAAAAGAGTTGTACTAAAGACTAAATTTTTCTTTGTTCACTCTAATTTGCCGCTACTTAAAACTGCAACTGGGAGACCATAAAGATAGCATTGAGATTGAGTTCATTAAGGGTAATTTCTTGTTCTATAGTTCGTGATTTTGAGATATTTGCCAGGCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAGGTTTCATTTACCTTTGGTTTTACAATTTTTTGTTTCTCAAGTTTGGTCTTAGCACATGATGACACACTCGTCTATGGAGTTGATCCTCGAAACAATCATAATGCAGTTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTG</genome_strand>
        <mrna_strand>GCTGTCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTATGCTTTGGAGTAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG..........................................................................................................TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGAATACAGGAAGTATCGGGATGCTTCCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699533" ref_strand="+" ref_description="SGN-E699533 [FA10BG02]">
      <seq>cttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagccccagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttattttggcaaaccaagaggattcagcactgataaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgaaagaattgctcgtattgcatttgaaactgcaaggaagcgaagaggaaaactatgtagcgtggataaagcaaatgtattggaggcctctatgctttggaggaagatagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131310" stop="124268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131010" g_stop="130783" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="358" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="470" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="546" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126074" g_stop="125986" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="635" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125403" g_stop="125317" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="722" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="125316" i_stop="124595" i_length="722">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124594" g_stop="124568" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="749" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E699533" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131010" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126192"/>
          <exon e_start="126074" e_stop="125986"/>
          <exon e_start="125403" e_stop="125317"/>
          <exon e_start="124594" e_stop="124568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAGGTAAAAGCTAATTTTTCTCTCCCTGTTCCTCAACCCTTCTTTTCTTCTCCTCAGTATCTGCCTTCAACTTTCTTGTCTAATTCTGTTTCTTTTATAAAACAAGTAAATCTATTAATAGTTGCATCAACGTGGTGCCTCGATAGTCTTCACCACACATATGATTTCTCTTTAACCTTCTGGGGAAAAAAAGAATCTAGTCAACTACCCAACTATCTAGCCAAAAAATTATCTATTCTATATACCAGAAGTAGACTAGAATTAGAAAGGAGCTCGTTATTCTCCAAGAATATCCTTCAATTGGTTTATGTAATCTTTCTTTGCAAATCATCCAGCAAAAGCCATAGTTGAGTCATTCTCACGCTACTCTTCTTCAATCATGAATCTTCACCAATCTCATGCTAGCCAAGGGTGTTTGCTGCTGAATTGTTAATGAGAAATACAACACAAATAAGGGAAAAACAAAAATCCACGAGTCGTAACTCGTGTGCAAGTGTAAGATCAATTAATTAACAAAATCTGCTCTACTTTAAGCAAGTTTCTTGTTTATCCCTTCAGCAGTTGACGTTTTAAAAGAGTTGTACTAAAGACTAAATTTTTCTTTGTTCACTCTAATTTGCCGCTACTTAAAACTGCAACTGGGAGACCATAAAGATAGCATTGAGATTGAGTTCATTAAGGGTAATTTCTTGTTCTATAGTTCGTGATTTTGAGATATTTGCCAGGCCTCTATGCTTTGGAGGAAGATAGTT</genome_strand>
        <mrna_strand>CTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCCAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTATGCTTTGGAGGAAGATAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487295" ref_strand="+" ref_description="SGN-E487295 [cSTE-25-G21]">
      <seq>ttcttcttcttctttacaattcactgcaacaccttttaaccaatttcattcaaaacaagtacccaaacacgccactaaatggggtactattcgctgttccactgcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtcatttctgttgccaaaaatgccctccaactcgtcgcctctattgaaggatttgaagttgcattcgaagagatgcctatgggaggggctgcattggatgctgtaggagtaccattgcctgctgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggcttgcaggtctttgctaacttgagaccagccagtgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttacaggaggtatttattttggcaaaccaagaggattcggcactaatgaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagattgacagaattgctcgtattgcatttgaaactgcaaggaagcgtagaggaaaactatgtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131294" stop="125041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130994" g_stop="130783" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="342" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="454" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="530" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117">
            <donor d_prob="0.475" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126074" g_stop="125986" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="619" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125403" g_stop="125341" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="682" r_length="63" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E487295" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130994" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126192"/>
          <exon e_start="126074" e_stop="125986"/>
          <exon e_start="125403" e_stop="125341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGC</genome_strand>
        <mrna_strand>TTCTTCTTCTTCTTTACAATTCACTGCAACACCTTTTAACCAATTTCATTCAAAACAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCACTGCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTCGTCGCCTCTATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGAGTACCATTGCCTGCTGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGCTTGCAGGTCTTTGCTAACTTGAGACCAGCCAGTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACAGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCGGCACTAATGAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGTAGAGGAAAACTATGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343109" ref_strand="+" ref_description="SGN-E343109 [cTOF-11-P24]">
      <seq>attcttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatgggttgttagggaacttatggnaggtatttattttggcaaaccaagaggattcagcactgataaaaatggtcaggaaataggtttcacactgnaagtgtatgcagcatattgagatcgaaagattggctcgtattgcatttgaaactgcaaggaagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131313" stop="125059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131013" g_stop="130783" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="361" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="473" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="550" r_length="77" r_score="0.934"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117">
            <donor d_prob="0.475" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126074" g_stop="125986" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="640" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582">
            <donor d_prob="0.973" d_score="0.90"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125403" g_stop="125359" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="685" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E343109" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131013" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126192"/>
          <exon e_start="126074" e_stop="125986"/>
          <exon e_start="125403" e_stop="125359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAAT-GGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTG-AAGTGTATGCAGCATA-TGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGA</genome_strand>
        <mrna_strand>ATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGGTTGTTAGGGAACTTATGGNAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTC-ACACTGNAAGTGTATGCAGCATATTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGATTGGCTCGTATTGCATTTGAAACTGCAAGGAAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416845" ref_strand="+" ref_description="SGN-E416845 [STM-23-B18]">
      <seq>cttctttacaattcactgcaacaccttttaaccaatttcattcaaaacaagtacccaaacacgccactaaatggggtactattcgctgttccgctgcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtcatttctgttgccaaaaatgccctccaactcgtcgcctctattgaaggatttgaagttgcattcgaagagatgcctatgggaggggctgcattggatgctgtaggagtaccattgcctgctgagactcttaattcagcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgctccaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttacaggaggtatttattttggcaaaccaagaggattcagcactaatgaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgacagaattgctcgtattgcatttgaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131286" stop="125070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130986" g_stop="130783" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="334" r_length="130" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="446" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="522" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117">
            <donor d_prob="0.475" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126074" g_stop="125986" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="611" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125403" g_stop="125371" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="644" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E416845" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130986" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126192"/>
          <exon e_start="126074" e_stop="125986"/>
          <exon e_start="125403" e_stop="125371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACT</genome_strand>
        <mrna_strand>CTTCTTTACAATTCACTGCAACACCTTTTAACCAATTTCATTCAAAACAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTGCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTCGTCGCCTCTATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGAGTACCATTGCCTGCTGAGACTCTTAATTCAGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTCCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACAGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTAATGAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACAGAATTGCTCGTATTGCATTTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584335" ref_strand="+" ref_description="SGN-E584335 [10159]">
      <seq>gaagtcatttctgttgccaaaaatgccctccaactcgtcgcctctattgaaggatttgaagttgcattcgaagagatgcctatgggagggggctgcattggatgctgtagagtaccattgcctgctgagactcttaattcagcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgctccaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagaccttatggttgttagggaacttacaggaggtatttattttggccaaccaagaggattcaggcactaatgaaaatggtcaggaaatacgtttcaacactgaagtgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131134" stop="125697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130834" g_stop="130783" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.557" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="182" r_length="130" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="294" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="370" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117">
            <donor d_prob="0.475" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126074" g_stop="125997" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="449" r_length="79" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E584335" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130834" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126192"/>
          <exon e_start="126074" e_stop="125997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGG-GGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCA-GCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATG</genome_strand>
        <mrna_strand>GAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTCGTCGCCTCTATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCTATGGGAGGGGGCTGCATTGGATGCTGTA-GAGTACCATTGCCTGCTGAGACTCTTAATTCAGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTCCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTTATGGTTGTTAGGGAACTTACAGGAG.....................................................................................................................GTATTTATTTTGGCCAACCAAGAGGATTCAGGCACTAATGAAAATGGTCAGGAAATACGTTTCAACACTGAAGTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270811" ref_strand="+" ref_description="SGN-E270811 [cLEM-6-M15]">
      <seq>tcacattcttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131317" stop="125884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131017" g_stop="130783" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="365" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="477" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="553" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126074" g_stop="126064" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="564" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E270811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131017" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126192"/>
          <exon e_start="126074" e_stop="126064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTT</genome_strand>
        <mrna_strand>TCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330375" ref_strand="+" ref_description="SGN-E330375 [cTOD-4-I1]">
      <seq>gcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131286" stop="125884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130987" g_stop="130783" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="335" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="447" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="523" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126074" g_stop="126064" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="534" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E330375" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130987" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126192"/>
          <exon e_start="126074" e_stop="126064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTT</genome_strand>
        <mrna_strand>GCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439719" ref_strand="+" ref_description="SGN-E439719 [cSTA-13-E18]">
      <seq>cttctttacaattcactgcaacaccttttaaccaatttcattcaaaacaagtacccaaacacgccactaaatggggtactattcgctgttccgctgcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtcatttctgttgccaaaaatgccctccaactcgtcgcctctattgaaggatttgaagttgcattcgaagagatgcctatgggaggggctgcattggatgctgtaggagtaccattgcctgctgagactcttaattcagcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgctccaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttacaggaggtatttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131286" stop="125884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130986" g_stop="130783" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="334" r_length="130" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="446" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="522" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117">
            <donor d_prob="0.475" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126074" g_stop="126064" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="533" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E439719" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130986" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126192"/>
          <exon e_start="126074" e_stop="126064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTT</genome_strand>
        <mrna_strand>CTTCTTTACAATTCACTGCAACACCTTTTAACCAATTTCATTCAAAACAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTGCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTCGTCGCCTCTATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGAGTACCATTGCCTGCTGAGACTCTTAATTCAGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTCCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACAGGAG.....................................................................................................................GTATTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359436" ref_strand="+" ref_description="SGN-E359436 [cLHT-31-I20]">
      <seq>cggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttctgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaactcgtcgcctccattgaaggatttgaagttgcattcgaggagatgcctatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatacaaatgggacaaaaatgaaaaacatttgaaacccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131298" stop="125896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130998" g_stop="130783" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.557" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="346" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="458" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126196" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="530" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E359436" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130998" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACT</genome_strand>
        <mrna_strand>CGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCTGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTCGTCGCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATACAAATGGGACAAAAATGAAAAACATTTGAAACCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415285" ref_strand="+" ref_description="SGN-E415285 [STM-21-G5]">
      <seq>accaatttcattcaaaacaagtacccaaacacgccactaaatggggtactattcgctgttccgctgcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggccctgaagtcatttctgttgccaaaaatgccctccaacttgtcgcctccatcgaaggatttgaagttgcattcgaagagatgcctatgggaggggctgcattggatgctgtaggagtaccattgcctgctgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggcttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaaaaaagaagttgctgaaggtgtagacctaatggttgttagggaacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131256" stop="125897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130956" g_stop="130783" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="304" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="416" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126197" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="487" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E415285" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130956" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTAC</genome_strand>
        <mrna_strand>ACCAATTTCATTCAAAACAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTGCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGCCCTGAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCGCCTCCATCGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGAGTACCATTGCCTGCTGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGCTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAAAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302870" ref_strand="+" ref_description="SGN-E302870 [cLEW-26-G5]">
      <seq>acattcttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131315" stop="125946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131015" g_stop="130783" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="363" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="475" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126246" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="497" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E302870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131015" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGA</genome_strand>
        <mrna_strand>ACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305021" ref_strand="+" ref_description="SGN-E305021 [cLEX-10-G16]">
      <seq>ttcttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaagggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131312" stop="125947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131012" g_stop="130783" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="360" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="472" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126247" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="493" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E305021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131012" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTG</genome_strand>
        <mrna_strand>TTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAAGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358874" ref_strand="+" ref_description="SGN-E358874 [cLHT-24-G19]">
      <seq>aatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttctgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaactcgtctcctccattgaaggatttgaagttgcattcgaggagatgcctatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatacaaatgggacaaaaatgaaaaacatttgaaacccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131303" stop="125947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131003" g_stop="130783" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.557" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="351" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128422" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="463" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126267" g_stop="126247" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="484" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E358874" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131003" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128422"/>
          <exon e_start="126267" e_stop="126247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTG</genome_strand>
        <mrna_strand>AATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCTGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTCGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATACAAATGGGACAAAAATGAAAAACATTTGAAACCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559249" ref_strand="+" ref_description="SGN-E559249 [18716]">
      <seq>cttaaaggggagtgagcccaacaaatgtttggacattagaaaaatgattaaaagatgaaaatctgtagaaaatgtttttaaaatttcataaaattctttaaagaatatgcacaacatttatttgctacctgctcataataatttgtagaattttaagttcttttttgtttgtttgtagaattgtaagttacctaaatgctaattatagaataacatattagttatgatcaaatacttaaaacaaagattaaaactgaagtatttgacgtgtcattgggtggacgattcaaaacatggaagtattttactaggcatccatggagcatatcaagttgacaacacaagggtaaagtaaactgtgcatgtgaatgcccctcttatccaagcgcatcctatacgactttaggacctcaatggttgcctcaggtgcttagaggttgtctctcctcaagatgagtcctggtgagtttcaacatttttccttaaaaccattggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128074" stop="126999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127774" g_stop="127324" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E559249" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127774" e_stop="127324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGT-ATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGAC-TTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAG</genome_strand>
        <mrna_strand>CTTAAAGGGGAGTGAGCCCAACAAATGTTTGGACATTAGAAAAATGATTAAAAGATGAAAATCTGTAGAAAATGTTTTTAAAATTTCATAAAATTCTTTA-AAGAATATGCACAACATTTATTTGCTACCTGCTCATAATAATTTGTAGAATTTTAAGTTCTTTTTTGTTTGTTTGTAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTCATTGGGTGGACGATTCAAAACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTGACAACACAAGGGTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGCATCCTATACGACTTTAGGACCTCAATGGTTGCCTCAGGTGCTTAGAGGTTGTCTCTCCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475513" ref_strand="+" ref_description="SGN-E475513 [cSTB-40-C10]">
      <seq>accaatttcattcaaaacaagtacccaaacacgccactaaatggggtactattcgctgttccgctgcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggccctgaagtcatttctgttgccaaaaatgccctccaacttgtcgcctccatcgaaggatttgaagttgcattctaagagatgcctatgggaggggctgcattggatgctgtaagagtaccattgcctgctgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcaagaaggcttgcaggtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131256" stop="128154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130956" g_stop="130783" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.557" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="304" r_length="130" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128454" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="384" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E475513" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130956" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTG</genome_strand>
        <mrna_strand>ACCAATTTCATTCAAAACAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTGCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGCCCTGAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCGCCTCCATCGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCTAAGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAAGAGTACCATTGCCTGCTGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCAAGAAGGCTTGCAGGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467404" ref_strand="+" ref_description="SGN-E467404 [cSTB-48-N13]">
      <seq>ttacaattcactgcaacaccttttaaccaatttcattcaaaacaagtacccaaacacgccactaaatggggtactattcgctgttgcgctgcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggccctgaagtcatttctgttgccaaaaatgccctccaacttgtcgcctccatcgaaggatttgaagttgcattcgaagagatgcctatgggaggggctgcattggatgctgtaggagtaccattgcctgctgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131281" stop="128178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130981" g_stop="130783" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="329" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128478" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="385" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E467404" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130981" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAAC</genome_strand>
        <mrna_strand>TTACAATTCACTGCAACACCTTTTAACCAATTTCATTCAAAACAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTGCGCTGCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGCCCTGAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCGCCTCCATCGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGAGTACCATTGCCTGCTGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279270" ref_strand="-" ref_description="SGN-E279270 [cLEL-4-I18](-)">
      <seq>gcacgaggtttgcttcagctcacattcttcatcaatggcggcttcttcttcttctttacaattcactgcacctccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131329" stop="128184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131036" g_stop="130783" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="384" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128484" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="434" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E279270" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279270" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131036" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCAGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGC</genome_strand>
        <mrna_strand>GCACGAGGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCACCTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279260" ref_strand="-" ref_description="SGN-E279260 [cLEL-4-E18](-)">
      <seq>gcacgaggtttgcttcagctcacattcttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttggaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaatgggaggatataaatgggacaaaaatgaaaaacatttgaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131329" stop="128198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131036" g_stop="130783" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="386" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128498" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="422" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E279260" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279260" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131036" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCAGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTT-GAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGT-AGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCC</genome_strand>
        <mrna_strand>GCACGAGGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATGGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330163" ref_strand="+" ref_description="SGN-E330163 [cTOD-5-F14]">
      <seq>cttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaagagatgccaatgggaagggctgcattggatgctgtaagggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131286" stop="128200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130986" g_stop="130783" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128649" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="334" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128533" g_stop="128500" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="368" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E330163" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130986" e_stop="130783"/>
          <exon e_start="128778" e_stop="128649"/>
          <exon e_start="128533" e_stop="128500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAG</genome_strand>
        <mrna_strand>CTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCAATGGGAAGGGCTGCATTGGATGCTGTAAGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309951" ref_strand="+" ref_description="SGN-E309951 [cTOA-4-A9]">
      <seq>cattcttcatcaatggcggcttcttcttcttctttacaattcactgcaaccccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactatccgctgatccgcttcttcacccagcaaaagctacatcattactcttcttgccggcgatggtattggacctgaagtaatctctgttgccaaaaatgccctccaacttgtctcctccattgaaggattagaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaagggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="131314" stop="128369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131014" g_stop="130783" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.557" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128778" g_stop="128669" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="342" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E309951" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131014" e_stop="130783"/>
          <exon e_start="128778" e_stop="128669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACT</genome_strand>
        <mrna_strand>CATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACCCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATCCGCTGATCCGCTTCTTCACCCAGCAAAAGCTACATCATTACTCTTCTTGCCGGCGATGGTATTGGACCTGAAGTAATCTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAAGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547458" ref_strand="+" ref_description="SGN-E547458 [TUS-71-F15](-)">
      <seq>cccccatccccacccccaaccttgcacacctcaccntgaccnccaccccccacccccaccccaagttcatgaggggccagtatttgaattttcaggaagaaaatttaaaatggaacaaggacatgaacaatgttatgaaaattgttataaaggtatatttggtggtgaaggaagtccattatatgctgaacaagaatgctatgatatgtgccataaccatggtaaatttgcattcccaacttttagtcctcctcctcctcaactataagtttaatttcgatttcaacgtatcgagaataacctaagctatgctcgctcaatcaaatgttattcgagctatttttgaggagttaaaaagaggttatattttgatcgcgattatatggaggcacatttttttttttgatttcatgtcatataaatttttataaccaatatatgttggtgatcatatgtaatgtaacatttttatgaaatacattttcacttggcatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="133461" stop="53408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133161" g_stop="132642" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132641" i_stop="131825" i_length="817">
            <donor d_prob="0.236" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131824" g_stop="131808" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="530" r_length="17" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E547458" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133161" e_stop="132642"/>
          <exon e_start="131824" e_stop="131808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCACCCCCACCCCCAACCTTGCTCGCCTCACCCCGACCCCCACCCCCACCCCCACCCCCAAGGTCCTGAGGGGCCAGTATTTGAATTTTCAGGAAGAAAATTTAAAATGGAACAAGGACATGAACAATGTTATGAAAATTGTTATAAAGGTATATTTGGTGGTGAAGGAAGTCCATTATATGCTGAACAAGAATGCTATGATATGTGCCATAACCATGGTAAATTTGCATTCCCAACTTTTAGTCCTCCTCCTCCTCAACTATAAGTTTAATTTCAATTTCAACGTATCGAGAATAACCTAAGCTACGCTCGCTCAATCAAATGTTATTCGAGCTATTTTTGAGGAGTTAAAAAGAGGTTATATTTTGATCGCGATTATATGGAGGCACATTTTTATTTTTATTTTTGATTTCATGTCATATAAATTTTTATAACCAATGTATGTTGGTGATCATATGTATATGTAACATTTTTATGAAATACATTTTCACTTGGCATGAATATGATGAACTTATTGGTTTGTGTTACACTTTTATTTTTATGTGGATACATTATTCTAAAAGAAAATAAATTAAATTAGAACAACATACATGCAAAACTTGTGAAGAATGTAACAAGTCATACAGAGAATGGAGATAATACAAGTTTTGTTAATCTAAATATATCGCGATCATTAATTTCATATCAAATTTATGCAATATCTACTTTTTTATTTAATTTTAAAGTCAAACGAATTTTTAAGCGACCACTTTTTTATATGCCTTATAACTAATTTTATGTTAATTATTATGATTTATAAGTTTTTTTTTTTTTACATAATTTTCAAAAATGTAATTTTACTTTAAAAAAGATATGCAAACTTTCGTGTTGAAATGCACAAACAAATTTAAAAGTTTGACTATCGCAAAATTGAGATAAAAAGAATAATTAATCTTGATAAAAAATTCAATATAAATCGTACTAGTTTATAGTCTAATTACGTATCTTTTCGTTAGTTTTTGAAATCACATTTATATATGGCACACTAAGATACATGCGAGGTCAGATTAGGCGTAATTTTATTCGAGATACGTTATATTCAAGTGTGATTCACATGTATATGATATACATTGTCTCTCTTACTCGCCTCTCTCCTTATGAATTTGCATTTCAGAACGTATCGATATCAAAGATACATGTATATATCTAATATCTTTAATACATGTATTTGCCTTAAAATCTGAAGAAACAATGTATCTAACTTCAAATCTAGTATGAATTGAACGTATTAATTACCAAAAAATATCTAATTATTTTAAACCGTAGAAAGAATTAGTATGATAGATTTTTTGTCAAAAAAAAAGAAGAAAAA</genome_strand>
        <mrna_strand>CCCCCATCCCCACCCCCAACCTTGCACACCTCACCNTGACCNCCACCCCCCACCCCCACCCCAAGTTCATGAGGGGCCAGTATTTGAATTTTCAGGAAGAAAATTTAAAATGGAACAAGGACATGAACAATGTTATGAAAATTGTTATAAAGGTATATTTGGTGGTGAAGGAAGTCCATTATATGCTGAACAAGAATGCTATGATATGTGCCATAACCATGGTAAATTTGCATTCCCAACTTTTAGTCCTCCTCCTCCTCAACTATAAGTTTAATTTCGATTTCAACGTATCGAGAATAACCTAAGCTATGCTCGCTCAATCAAATGTTATTCGAGCTATTTTTGAGGAGTTAAAAAGAGGTTATATTTTGATCGCGATTATATGGAGGCACA----T-TTTTT-TTTTTGATTTCATGTCATATAAATTTTTATAACCAATATATGTTGGTGATCATATGTA-ATGTAACATTTTTATGAAATACATTTTCACTTGGCATGAAAAAAAAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547832" ref_strand="+" ref_description="SGN-E547832 [TUS-71-O17](-)">
      <seq>tgcgaggttttttttttcatgccaagtgaaaatgtatttcataaaaatgttacattacatatgatccccaacatatattggttataaaaatttatatgccatgaaatcaaaaaaaaaaaaaaatgtgcctccatataatcgcgatcaaaatataacctctttttaactcctcaaaaatagctcgaataacatttgattgagcgagcatagcttaggttattctcgatacgttgaaatcgaaattaaacttatagttgaggaggaggaggactaaaagttgggaatgcaaatttaccatggttatggcacatatcatagcattcttgttcagcatataatggacttccttcaccaccaaatatacctttataacaattttcataacattgttcatgtccttgttccattttaaattttcttcctgaaaattcaaatactggcccctcatgaacttgggggtgggggtgggggtgggggtcagggtgaggtgtgcaaggttgggggtggggatgggggtgggggtggggtatttcctcatgtgcatatgcaagtttgcttgaaataaagatagtaacaatggcaaataaaaagatactagtaatatttttgttaatagccattatttcttttaattccctctatactttcctatttttttctatgagaaaagttaaaaagagggaataaaaagaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="132347" stop="133642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132643" g_stop="133329" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="721"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E547832" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132643" e_stop="133329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGTTCATCATATTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACATATACATATGATCACCAACATACATTGGTTATAAAAATTTATATGACATGAAATCAAAAATAAAAATAAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCGTAGCTTAGGTTATTCTCGATACGTTGAAATTGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCAGGACCTTGGGGGTGGGGGTGGGGGTGGGGGTCGGGGTGAGGCGAGCAAGGTT----G-GGGG-TGGGGGTGGGGGTGGGGTATTTCCTCATGTGCATATGCAAGTTTGCTTGAAATAAAGATAGTAACAATGGCAATTAAAAAGATACTAGTAATATTTTTGTTAATAGCCATTATTTCTTTTAATTCCCTCTATACTTTCCTATTTTTTTCTATGAGAAAAGTTAAAAAGAGGGAATAAAAA</genome_strand>
        <mrna_strand>TGCGAGGTTTTTTTTTTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACAT-TACATATGATCCCCAACATATATTGGTTATAAAAATTTATATGCCATGAAATCAAAAA-AAAAA-AAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCATAGCTTAGGTTATTCTCGATACGTTGAAATCGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCATGAACTTGGGGGTGGGGGTGGGGGTGGGGGTCAGGGTGAGGTGTGCAAGGTTGGGGGTGGGGATGGGGGTGGGGGTGGGGTATTTCCTCATGTGCATATGCAAGTTTGCTTGAAATAAAGATAGTAACAATGGCAAATAAAAAGATACTAGTAATATTTTTGTTAATAGCCATTATTTCTTTTAATTCCCTCTATACTTTCCTATTTTTTTCTATGAGAAAAGTTAAAAAGAGGGAATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547833" ref_strand="+" ref_description="SGN-E547833 [TUS-71-O17]">
      <seq>ttttttttttcatgccaagtgaaaatgtatttcataaaaatgttacattacatatgatcaccaacatatattggttataaaaatttatatgacatgaaatcaaaaaaaaaaaaaaatgtgcctccatataatcgcgatcaaaatataacctctttttaactcctcaaaaatagctcgaataacatttgattgagcgagcatagcttaggttattctcgatacgttgaaatcgaaattaaacttatagttgaggaggaggaggactaaaagttgggaatgcaaatttaccatggttatggcacatatcatagcattcttgttcagcatataatggacttccttcaccaccaaatatacctttataacaattttcataacattgttcatgtccttgttccattttaaattttcttcctgaaaattcaaatactggcccctcatgaacttgggggtgggggtggggggtgggggtcagggtgaggtgtgcaaggttgggggtggggatgggggtgggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="132356" stop="133466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132650" g_stop="133165" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E547833" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132650" e_stop="133165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCATATTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACATATACATATGATCACCAACATACATTGGTTATAAAAATTTATATGACATGAAATCAAAAATAAAAATAAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCGTAGCTTAGGTTATTCTCGATACGTTGAAATTGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCAGGACCTTGGGGGTGGGGGT-GGGGGTGGGGGTCGGGGTGAGGCGAGCAAGGTTGGGGGTGGGGGTGGGGGTGGG</genome_strand>
        <mrna_strand>TTTTTTTTTTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACAT-TACATATGATCACCAACATATATTGGTTATAAAAATTTATATGACATGAAATCAAAAA-AAAAA-AAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCATAGCTTAGGTTATTCTCGATACGTTGAAATCGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCATGAACTTGGGGGTGGGGGTGGGGGGTGGGGGTCAGGGTGAGGTGTGCAAGGTTGGGGGTGGGGATGGGGGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364436" ref_strand="+" ref_description="SGN-E364436 [cLPP-20-J16]">
      <seq>tttttttttcatgccaagtgaaaatgtatttcataaaaatgttacattacatatgatcaccaacatatattggttataaaaatttatatgacatgaaatcaaaaaaaaaaaaaaatgtgcctccatataatcgcgatcaaaatataacctctttttaactcctcaaaaatagctcgaataacatttgattgagcgagcatagcttaggttattctcgatacgttgaaatcgaaattaaacttatagttgaggaggaggaggactaaaagttgggaatgcaaatttaccatggttatggcacatatcatagcattcttgttcagcatataatggacttccttcaccaccaaatatacctttataacaattttcataacattgttcatgtccttgttccattttaaattttcttcctgaaaattcaaatactggcccctcatgaacttgggggtgggggtgggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="+" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="132356" stop="133417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132651" g_stop="133117" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="+" ref_id="SGN-E364436" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132651" e_stop="133117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATATTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACATATACATATGATCACCAACATACATTGGTTATAAAAATTTATATGACATGAAATCAAAAATAAAAATAAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCGTAGCTTAGGTTATTCTCGATACGTTGAAATTGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCAGGACCTTGGGGGTGGGGGTGGGGGT</genome_strand>
        <mrna_strand>TTTTTTTTTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACAT-TACATATGATCACCAACATATATTGGTTATAAAAATTTATATGACATGAAATCAAAAA-AAAAA-AAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCATAGCTTAGGTTATTCTCGATACGTTGAAATCGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCATGAACTTGGGGGTGGGGGTGGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549539" ref_strand="+" ref_description="SGN-E549539 [TUS-71-F15]">
      <seq>cttttctcatagaaaaaaataggaaagtatagagggaattaaaagaaataatggctattaacaaaaatattactagtatctttttatttgccattgttactatctttatttcaagcaaacttgcatatgcacatgaggaaataccccacccccacccccatccccacccccaaccttgcacacctcaccctgacccccacccccacccccacccccaagttcatgaggggccagtatttgaattttcaggaagaaaatttaaaatggaacaaggacatgaacaatgttatgaaaattgttataaaggtatatttggtggtgaaggaagtccattatatgctgaacaagaatgctatgatatgtgccataaccatggtaaatttgcattcccaacttttagtcctcctcctcctcaactataagtttaatttcgatttcaacgtatcgagaataacctaagctatgctcgctcaatcaaatgttattcgagctatttttgaggagttaaaaagaggttatattttgatcgcgattatatggaggcacatttttttttttgatttcatgtcatataaatttttataaccaatatatgttggtgatcatatgtaatgtaacatttttatgaaatacattttcacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="133609" stop="132364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133309" g_stop="132664" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E549539" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133309" e_stop="132664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCATAGAAAAAAATAGGAAAGTATAGAGGGAATTAAAAGAAATAATGGCTATTAACAAAAATATTACTAGTATCTTTTTAATTGCCATTGTTACTATCTTTATTTCAAGCAAACTTGCATATGCACATGAGGAAATACCCCACCCCCA----C--CCCCACCCCCAACCTTGCTCGCCTCACCCCGACCCCCACCCCCACCCCCACCCCCAAGGTCCTGAGGGGCCAGTATTTGAATTTTCAGGAAGAAAATTTAAAATGGAACAAGGACATGAACAATGTTATGAAAATTGTTATAAAGGTATATTTGGTGGTGAAGGAAGTCCATTATATGCTGAACAAGAATGCTATGATATGTGCCATAACCATGGTAAATTTGCATTCCCAACTTTTAGTCCTCCTCCTCCTCAACTATAAGTTTAATTTCAATTTCAACGTATCGAGAATAACCTAAGCTACGCTCGCTCAATCAAATGTTATTCGAGCTATTTTTGAGGAGTTAAAAAGAGGTTATATTTTGATCGCGATTATATGGAGGCACATTTTTATTTTTATTTTTGATTTCATGTCATATAAATTTTTATAACCAATGTATGTTGGTGATCATATGTATATGTAACATTTTTATGAAATACATTTTCACTTGG</genome_strand>
        <mrna_strand>CTTTTCTCATAGAAAAAAATAGGAAAGTATAGAGGGAATTAAAAGAAATAATGGCTATTAACAAAAATATTACTAGTATCTTTTTATTTGCCATTGTTACTATCTTTATTTCAAGCAAACTTGCATATGCACATGAGGAAATACCCCACCCCCACCCCCATCCCCACCCCCAACCTTGCACACCTCACCCTGACCCCCACCCCCACCCCCACCCCCAAGTTCATGAGGGGCCAGTATTTGAATTTTCAGGAAGAAAATTTAAAATGGAACAAGGACATGAACAATGTTATGAAAATTGTTATAAAGGTATATTTGGTGGTGAAGGAAGTCCATTATATGCTGAACAAGAATGCTATGATATGTGCCATAACCATGGTAAATTTGCATTCCCAACTTTTAGTCCTCCTCCTCCTCAACTATAAGTTTAATTTCGATTTCAACGTATCGAGAATAACCTAAGCTATGCTCGCTCAATCAAATGTTATTCGAGCTATTTTTGAGGAGTTAAAAAGAGGTTATATTTTGATCGCGATTATATGGAGGCACA----T-TTTTT-TTTTTGATTTCATGTCATATAAATTTTTATAACCAATATATGTTGGTGATCATATGTA-ATGTAACATTTTTATGAAATACATTTTCACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361088" ref_strand="+" ref_description="SGN-E361088 [cLPP-13-G24]">
      <seq>ttttctcatagaaaaaaataggaaagtatagagggaattaaaagaaataatggctattaacaaaaatattactagtatctttttatttgccattgttactatctttatttcaagcaaacttgcatatgcacatgaggaaataccccacccccacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="133608" stop="132852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133308" g_stop="133152" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E361088" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133308" e_stop="133152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCATAGAAAAAAATAGGAAAGTATAGAGGGAATTAAAAGAAATAATGGCTATTAACAAAAATATTACTAGTATCTTTTTAATTGCCATTGTTACTATCTTTATTTCAAGCAAACTTGCATATGCACATGAGGAAATACCCCACCCCCACCCC</genome_strand>
        <mrna_strand>TTTTCTCATAGAAAAAAATAGGAAAGTATAGAGGGAATTAAAAGAAATAATGGCTATTAACAAAAATATTACTAGTATCTTTTTATTTGCCATTGTTACTATCTTTATTTCAAGCAAACTTGCATATGCACATGAGGAAATACCCCACCCCCACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393832" ref_strand="+" ref_description="SGN-E393832 [TUS-14-O21](-)">
      <seq>ttacttgatgaggatttttgtccaaagatctttgactttggccttgccaaactatgcataaaaaaggagagtgtcgtgtcaatgttaggtccacgaggtactataggctatattgctccggaaattgtttgcagaaacttgggaggcccctctcacaagtttgacgtctatagctatggaatgatggtcctagagatggttggaggaagaaaaaatgttgatgtaggagttgatcgcactagtgaaatttactttccacattggctttatcaacgacttgaactagaagaagagcttcaactaatcgggataatgaatgaagaggagaacgaatgtgcaagaaagatggtgatagcgagtttatggtgcatacagactgatccctcaaatcggccatcgatgagcaaggttgttgaaatgttagaagggaaactagactctttgcaaatgcctcccaagccttatctattttctccctcaagatcagaggtaaattcattagtagtagaactggcctagcctttatttgctgatatgtaagctatcatttgtattattgtatagcctcactttgttatgaaatttcagctaaatagttgttgttttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="134828" stop="133618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134528" g_stop="133923" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="608" polyA_stop="619"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E393832" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134528" e_stop="133923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTGATGAGGATTTTTGTCCAAAGATCTCTGACTTTGGCCTTGCCAAACTATGCATAAAAAAGGAGAGTGTCGTGTCAATGTTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGTGTCTCTCACAAGTCTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCACTAGTGAAATCTACTTTCCACATTGGCTTTATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATCGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATCTATTTTCTCCCTCAAGATCAGAGGTAAATTCATTAGTAGTAGAACTGGCCTAGCCTTTATTTGCTGATATGTAAGCTATCATTTGTATTATTGTATAGCCTCACTTTGTTATGAAATTTCAGCTAAATAGTTGTTGTTTT</genome_strand>
        <mrna_strand>TTACTTGATGAGGATTTTTGTCCAAAGATCTTTGACTTTGGCCTTGCCAAACTATGCATAAAAAAGGAGAGTGTCGTGTCAATGTTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGCCCCTCTCACAAGTTTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCACTAGTGAAATTTACTTTCCACATTGGCTTTATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATCGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATCTATTTTCTCCCTCAAGATCAGAGGTAAATTCATTAGTAGTAGAACTGGCCTAGCCTTTATTTGCTGATATGTAAGCTATCATTTGTATTATTGTATAGCCTCACTTTGTTATGAAATTTCAGCTAAATAGTTGTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395302" ref_strand="+" ref_description="SGN-E395302 [TUS-14-P21](-)">
      <seq>tgaggatttttgtccaaagatttttgactttggccttgccaaactatgcataaaaaaaggagagtgttcgtgtcaatgtttaggtccacgaggtactataggctatattgctccggaaattgtttgcagaaacttgggaggtgtctctcacaagtctgacgtctatagctatggaatgatggtcctagagatggttggaggaagaaaaaatgttgatgtaggagttgatcgcaatagtgaaatgtactttccacattggaataatcaacgacttgaactagaagaagagcttcaactaatcgggataatgaatgaagaggagaacgaatgtgcaagaaagatggtgatagcgagtttatggtgcatacagactgatccctcaaatcggccatggatgagcaaggttgttgaaatgttagaagggaaactagactctttgcaaatgcctcccaagccttatgtattttctccctcaagatcagaggaaaattcattagtagttgaactggcctagcctttattcgctgatatgtaagctatcatttgtatttttaaagggcctcaatttgttatgaaatatcaggtaactatttaaaggtgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="134820" stop="133665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134520" g_stop="133934" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="614"/>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E395302" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134520" e_stop="133934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATTTTTGTCCAAAGATCTCTGACTTTGGCCTTGCCAAACTATGCAT-AAAAAAGGAGAGTG-TCGTGTCAATG-TTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGTGTCTCTCACAAGTCTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCACTAGTGAAATCTACTTTCCACATTGGCTTTATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATCGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATCTATTTTCTCCCTCAAGATCAGAGGTAAATTCATTAGTAGTAGAACTGGCCTAGCCTTTATTTGCTGATATGTAAGCTATCATTTGTATTATTGTATAGCCTCACTTTGTTATGAAATTTCAGCTAAATA</genome_strand>
        <mrna_strand>TGAGGATTTTTGTCCAAAGATTTTTGACTTTGGCCTTGCCAAACTATGCATAAAAAAAGGAGAGTGTTCGTGTCAATGTTTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGTGTCTCTCACAAGTCTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCAATAGTGAAATGTACTTTCCACATTGGAATAATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATGGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATGTATTTTCTCCCTCAAGATCAGAGGAAAATTCATTAGTAGTTGAACTGGCCTAGCCTTTATTCGCTGATATGTAAGCTATCATTTGTATTTTTAAAGGGCCTCAATTTGTTATGAAATATCAGGTAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379546" ref_strand="+" ref_description="SGN-E379546 [TUS-1-K24](-)">
      <seq>gaaaaaagatccgacaatgttcgccaattaagttggccaatattatacaaaatcgcactaggcatgcttcgaggattggagtacttgcaccgtggttgtaacactcggattttgcattttgatataaagcctcataatatcttacttgatgaggatttttgtccaaagatctctgactttggccttgccaaactatgcataaaaaaggagagtgtcgtgtcaatgttaggtccacgaggtactataggctatattgctccggaaattgtttgcagaaacttgggaggtgtctctcacaagtctgacgtctatagctatggaatgatggtcctagagatggttggaggaagaaaaaatgttgatgtaggagttgatcgcactagtgaaatctactttccacattggctttatcaacgacttgaactagaagaagagcttcaactaatcgggataatgaatgaagaggagaacgaatgtgcaagaaagatggtgatagcgagtttatggtgcatacagactgatccctcaaatcggccatcgatgagcaaggttgttgaaatgttagaagggaaactagactctttgcaaatgcctcccaagccttatctattttctccctcaagatcagaggtaaattcattagtagtagaactggcctagcctttatttgctgatatgtaagctatcatttgtattattgtataacctcactttgtatgaaattcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLe0028N03-1AJF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLe0028N03.1" temp_strand="-" temp_description="C05SLe0028N03.1  AC212305.1 htgs_phase:3 submitted_to_sgn_as:C05SLe0028N03 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="134969" stop="133639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134669" g_stop="133939" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLe0028N03.1" gen_strand="-" ref_id="SGN-E379546" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLe0028N03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134669" e_stop="133939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAGATCCGACAATGTTCGCCAATTAAGTTGGCCAATATTATACAAAATCGCACTAGGCATTGCTCGAGGATTGGAGTACTTGCACCGTGGTTGTAACACTCGGATTTTGCATTTTGATATAAAGCCTCATAATATCTTACTTGATGAGGATTTTTGTCCAAAGATCTCTGACTTTGGCCTTGCCAAACTATGCATAAAAAAGGAGAGTGTCGTGTCAATGTTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGTGTCTCTCACAAGTCTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCACTAGTGAAATCTACTTTCCACATTGGCTTTATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATCGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATCTATTTTCTCCCTCAAGATCAGAGGTAAATTCATTAGTAGTAGAACTGGCCTAGCCTTTATTTGCTGATATGTAAGCTATCATTTGTATTATTGTATAGCCTCACTTTGTTATGAAATTTCAGCT</genome_strand>
        <mrna_strand>GAAAAAAGATCCGACAATGTTCGCCAATTAAGTTGGCCAATATTATACAAAATCGCACTAGGCATGCTTCGAGGATTGGAGTACTTGCACCGTGGTTGTAACACTCGGATTTTGCATTTTGATATAAAGCCTCATAATATCTTACTTGATGAGGATTTTTGTCCAAAGATCTCTGACTTTGGCCTTGCCAAACTATGCATAAAAAAGGAGAGTGTCGTGTCAATGTTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGTGTCTCTCACAAGTCTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCACTAGTGAAATCTACTTTCCACATTGGCTTTATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATCGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATCTATTTTCTCCCTCAAGATCAGAGGTAAATTCATTAGTAGTAGAACTGGCCTAGCCTTTATTTGCTGATATGTAAGCTATCATTTGTATTATTGTATAACCTCACTTTG-TATGAAA-TTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>144</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="15941" PGL_stop="14470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15941" e_stop="15596"/>
            <exon e_start="15477" e_stop="14470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15941" e_stop="15596" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.968">
            <gDNA_intron_boundary i_start="15595" i_stop="15478" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15477" e_stop="14470" e_length="1008"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15941" stop="15596"/>
              <exon start="15477" stop="15147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15654" stop="15596"/>
              <exon start="15477" stop="14806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15654" stop="15596"/>
              <exon start="15477" stop="14990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15217" stop="14604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429976" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15172" stop="14651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15170" stop="14470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGAGACGTTATCGGAAAATGTTGAACAATATGATCTAGTGGCACTAGATAATCAAGTGGCATTTGATCTTGATGAACTTCTCAAGGCATCTGCATTTGTCCTTGGTAAAAGTGGTATCGGCATTGTGTACAAAGTTGTGCTCGAAGACGGGCTTAACTTGGCTGTAAGGAGATTAGGCGAGGGTGGTTCACAAAGATTTAAGGAATTCCAGACGGAGGTCGAAGCAATTGGAAAACTGAGACATCAAAATATTGTGACTCTTCGTGCCTATTATTGGTCTGTCGATGAGAAGCTACTGATATATGACTTCATTCCAAATGGAAACCTTACCACTGCAATTCACG : GAAAACCTGGTATGGTGTCGTTTACACCGCTTTCATGGTCCATTCGACTGAAAATAATGAAGGGAACTGCAAAAGGTTTGGTTTATTTACATGAGTACAGTCCCAAGAAATATGTTCACGGCGATCTAAAGCCTTCTAATATATTACTTGGGCACGACATGGAGCCCAAAATCTCGGACTTTGGACTTGGACGTCTTGCTAATATAGCTGGAACATCCCCTACGTTGCAATCCAACCACATGACCTCTGAGAAACCACAACAAAGTAAGCAAGGCAGTGCGCCATCAGAGTCCGGGACAGTTACATCAACTACAACATCTGGTTCTTGCTACCAAGCTCCCGAGGCGTTAAAAGTGGTGAAACCATCACAAAAATGGGACATTTACTCGTACGGAGTGATCTTGCTTGAAATGATCACGGGAAGAACCCCGATTATCCAAGTAGGTTCTACTGAAATGGATCTCGTAAACTGGATTCACTGGTGCATTGAAGAGAAGAAGCCACTTTCGGATGTATTGGACTCGTGTTTAGCACAAGATGCTGATAAAGAAGAGGAAATGATCGCGGTTTTGAAGATTGCAATGGCGTGTGTTCACAGCAGCCCGGAGAGAAGACCTTCAATGAGACACATATCTGATGCATTAGACAGACTGCAAGCTTCCTCTGAATGAACAATTGAAACAGAACCTTCAGGCTGGCTTCACATTGCTGCAAGGATTACAGCATCTAACCGATAACCATGAAGCACGATCACTGCTTGGTGCGCGATACATATTGACTAACAGTAGTAATCTCCACTTGTTTGTGAAGGAATATCTGTTTGAATATTGGCCTTTTTGCTCTCTGATAGCAAGCTTTTTCTTGTGTCTATTTGATTAAGAACATAAATTATTTGTTTCTCTCCTTATTACTACATTACTATTCATCTTTTGTTTGTCACAAATGAGTATATGTAAATAAAAATGATTTGTCAAAAATATTAAATAAGATGGTGTAAGCAATAACTGT</gDNA_template>
            <first_frame> S  E  T  L  S  E  N  V  E  Q  Y  D  L  V  A  L  D  N  Q  V  A  F  D  L  D  E  L  L  K  A  S  A  F  V  L  G  K  S  G  I  G  I  V  Y  K  V  V  L  E  D  G  L  N  L  A  V  R  R  L  G  E  G  G  S  Q  R  F  K  E  F  Q  T  E  V  E  A  I  G  K  L  R  H  Q  N  I  V  T  L  R  A  Y  Y  W  S  V  D  E  K  L  L  I  Y  D  F  I  P  N  G  N  L  T  T  A  I  H   : G  K  P  G  M  V  S  F  T  P  L  S  W  S  I  R  L  K  I  M  K  G  T  A  K  G  L  V  Y  L  H  E  Y  S  P  K  K  Y  V  H  G  D  L  K  P  S  N  I  L  L  G  H  D  M  E  P  K  I  S  D  F  G  L  G  R  L  A  N  I  A  G  T  S  P  T  L  Q  S  N  H  M  T  S  E  K  P  Q  Q  S  K  Q  G  S  A  P  S  E  S  G  T  V  T  S  T  T  T  S  G  S  C  Y  Q  A  P  E  A  L  K  V  V  K  P  S  Q  K  W  D  I  Y  S  Y  G  V  I  L  L  E  M  I  T  G  R  T  P  I  I  Q  V  G  S  T  E  M  D  L  V  N  W  I  H  W  C  I  E  E  K  K  P  L  S  D  V  L  D  S  C  L  A  Q  D  A  D  K  E  E  E  M  I  A  V  L  K  I  A  M  A  C  V  H  S  S  P  E  R  R  P  S  M  R  H  I  S  D  A  L  D  R  L  Q  A  S  S  E  *  T  I  E  T  E  P  S  G  W  L  H  I  A  A  R  I  T  A  S  N  R  *  P  *  S  T  I  T  A  W  C  A  I  H  I  D  *  Q  *  *  S  P  L  V  C  E  G  I  S  V  *  I  L  A  F  L  L  S  D  S  K  L  F  L  V  S  I  *  L  R  T  *  I  I  C  F  S  P  Y  Y  Y  I  T  I  H  L  L  F  V  T  N  E  Y  M  *  I  K  M  I  C  Q  K  Y  *  I  R  W  C  K  Q  *  L  </first_frame>
            <second_frame>  Q  R  R  Y  R  K  M  L  N  N  M  I  *  W  H  *  I  I  K  W  H  L  I  L  M  N  F  S  R  H  L  H  L  S  L  V  K  V  V  S  A  L  C  T  K  L  C  S  K  T  G  L  T  W  L  *  G  D  *  A  R  V  V  H  K  D  L  R  N  S  R  R  R  S  K  Q  L  E  N  *  D  I  K  I  L  *  L  F  V  P  I  I  G  L  S  M  R  S  Y  *  Y  M  T  S  F  Q  M  E  T  L  P  L  Q  F  T  :  E  N  L  V  W  C  R  L  H  R  F  H  G  P  F  D  *  K  *  *  R  E  L  Q  K  V  W  F  I  Y  M  S  T  V  P  R  N  M  F  T  A  I  *  S  L  L  I  Y  Y  L  G  T  T  W  S  P  K  S  R  T  L  D  L  D  V  L  L  I  *  L  E  H  P  L  R  C  N  P  T  T  *  P  L  R  N  H  N  K  V  S  K  A  V  R  H  Q  S  P  G  Q  L  H  Q  L  Q  H  L  V  L  A  T  K  L  P  R  R  *  K  W  *  N  H  H  K  N  G  T  F  T  R  T  E  *  S  C  L  K  *  S  R  E  E  P  R  L  S  K  *  V  L  L  K  W  I  S  *  T  G  F  T  G  A  L  K  R  R  S  H  F  R  M  Y  W  T  R  V  *  H  K  M  L  I  K  K  R  K  *  S  R  F  *  R  L  Q  W  R  V  F  T  A  A  R  R  E  D  L  Q  *  D  T  Y  L  M  H  *  T  D  C  K  L  P  L  N  E  Q  L  K  Q  N  L  Q  A  G  F  T  L  L  Q  G  L  Q  H  L  T  D  N  H  E  A  R  S  L  L  G  A  R  Y  I  L  T  N  S  S  N  L  H  L  F  V  K  E  Y  L  F  E  Y  W  P  F  C  S  L  I  A  S  F  F  L  C  L  F  D  *  E  H  K  L  F  V  S  L  L  I  T  T  L  L  F  I  F  C  L  S  Q  M  S  I  C  K  *  K  *  F  V  K  N  I  K  *  D  G  V  S  N  N  C </second_frame>
            <third_frame>   R  D  V  I  G  K  C  *  T  I  *  S  S  G  T  R  *  S  S  G  I  *  S  *  *  T  S  Q  G  I  C  I  C  P  W  *  K  W  Y  R  H  C  V  Q  S  C  A  R  R  R  A  *  L  G  C  K  E  I  R  R  G  W  F  T  K  I  *  G  I  P  D  G  G  R  S  N  W  K  T  E  T  S  K  Y  C  D  S  S  C  L  L  L  V  C  R  *  E  A  T  D  I  *  L  H  S  K  W  K  P  Y  H  C  N  S  R :   K  T  W  Y  G  V  V  Y  T  A  F  M  V  H  S  T  E  N  N  E  G  N  C  K  R  F  G  L  F  T  *  V  Q  S  Q  E  I  C  S  R  R  S  K  A  F  *  Y  I  T  W  A  R  H  G  A  Q  N  L  G  L  W  T  W  T  S  C  *  Y  S  W  N  I  P  Y  V  A  I  Q  P  H  D  L  *  E  T  T  T  K  *  A  R  Q  C  A  I  R  V  R  D  S  Y  I  N  Y  N  I  W  F  L  L  P  S  S  R  G  V  K  S  G  E  T  I  T  K  M  G  H  L  L  V  R  S  D  L  A  *  N  D  H  G  K  N  P  D  Y  P  S  R  F  Y  *  N  G  S  R  K  L  D  S  L  V  H  *  R  E  E  A  T  F  G  C  I  G  L  V  F  S  T  R  C  *  *  R  R  G  N  D  R  G  F  E  D  C  N  G  V  C  S  Q  Q  P  G  E  K  T  F  N  E  T  H  I  *  C  I  R  Q  T  A  S  F  L  *  M  N  N  *  N  R  T  F  R  L  A  S  H  C  C  K  D  Y  S  I  *  P  I  T  M  K  H  D  H  C  L  V  R  D  T  Y  *  L  T  V  V  I  S  T  C  L  *  R  N  I  C  L  N  I  G  L  F  A  L  *  *  Q  A  F  S  C  V  Y  L  I  K  N  I  N  Y  L  F  L  S  L  L  L  H  Y  Y  S  S  F  V  C  H  K  *  V  Y  V  N  K  N  D  L  S  K  I  L  N  K  M  V  *  A  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15941" stop="15596"/>
                    <exon start="15477" stop="14807"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SETLSENVEQYDLVALDNQVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGLNLAVRRLGEGGSQRFKEFQTEVEAIGKLRHQNIVTLRAYYWSVDEKLLIYDFIPNGNLTTAIHGKPGMVSFTPLSWSIRLKIMKGTAKGLVYLHEYSPKKYVHGDLKPSNILLGHDMEPKISDFGLGRLANIAGTSPTLQSNHMTSEKPQQSKQGSAPSESGTVTSTTTSGSCYQAPEALKVVKPSQKWDIYSYGVILLEMITGRTPIIQVGSTEMDLVNWIHWCIEEKKPLSDVLDSCLAQDADKEEEMIAVLKIAMACVHSSPERRPSMRHISDALDRLQASSE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14832" stop="14599"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TDCKLPLNEQLKQNLQAGFTLLQGLQHLTDNHEARSLLGARYILTNSSNLHLFVKEYLFEYWPFCSLIASFFLCLFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14611" PGL_stop="15420"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14611" e_stop="15420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="14611" e_stop="15420" e_length="810"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14611" stop="15420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACAAGAAAAAGCTTGCTATCAGAGAGCAAAAAGGCCAATATTCAAACAGATATTCCTTCACAAACAAGTGGAGATTACTACTGTTAGTCAATATGTATCGCGCACCAAGCAGTGATCGTGCTTCATGGTTATCGGTTAGATGCTGTAATCCTTGCAGCAATGTGAAGCCAGCCTGAAGGTTCTGTTTCAATTGTTCATTCAGAGGAAGCTTGCAGTCTGTCTAATGCATCAGATATGTGTCTCATTGAAGGTCTTCTCTCCGGGCTGCTGTGAACACACGCCATTGCAATCTTCAAAACCGCGATCATTTCCTCTTCTTTATCAGCATCTTGTGCTAAACACGAGTCCAATACATCCGAAAGTGGCTTCTTCTCTTCAATGCACCAGTGAATCCAGTTTACGAGATCCATTTCAGTAGAACCTACTTGGATAATCGGGGTTCTTCCCGTGATCATTTCAAGCAAGATCACTCCGTACGAGTAAATGTCCCATTTTTGTGATGGTTTCACCACTTTTAACGCCTCGGGAGCTTGGTAGCAAGAACCAGATGTTGTAGTTGATGTAACTGTCCCGGACTCTGATGGCGCACTGCCTTGCTTACTTTGTTGTGGTTTCTCAGAGGTCATGTGGTTGGATTGCAACGTAGGGGATGTTCCAGCTATATTAGCAAGACGTCCAAGTCCAAAGTCCGAGATTTTGGGCTCCATGTCGTGCCCAAGTAATATATTAGAAGGCTTTAGATCGCCGTGAACATATTTCTTGGGACTGTACTCATGTAAATAAACCAAACCTTTTGCAGTTCCCTTCA</gDNA_template>
            <first_frame> T  Q  E  K  A  C  Y  Q  R  A  K  R  P  I  F  K  Q  I  F  L  H  K  Q  V  E  I  T  T  V  S  Q  Y  V  S  R  T  K  Q  *  S  C  F  M  V  I  G  *  M  L  *  S  L  Q  Q  C  E  A  S  L  K  V  L  F  Q  L  F  I  Q  R  K  L  A  V  C  L  M  H  Q  I  C  V  S  L  K  V  F  S  P  G  C  C  E  H  T  P  L  Q  S  S  K  P  R  S  F  P  L  L  Y  Q  H  L  V  L  N  T  S  P  I  H  P  K  V  A  S  S  L  Q  C  T  S  E  S  S  L  R  D  P  F  Q  *  N  L  L  G  *  S  G  F  F  P  *  S  F  Q  A  R  S  L  R  T  S  K  C  P  I  F  V  M  V  S  P  L  L  T  P  R  E  L  G  S  K  N  Q  M  L  *  L  M  *  L  S  R  T  L  M  A  H  C  L  A  Y  F  V  V  V  S  Q  R  S  C  G  W  I  A  T  *  G  M  F  Q  L  Y  *  Q  D  V  Q  V  Q  S  P  R  F  W  A  P  C  R  A  Q  V  I  Y  *  K  A  L  D  R  R  E  H  I  S  W  D  C  T  H  V  N  K  P  N  L  L  Q  F  P  S </first_frame>
            <second_frame>  H  K  K  K  L  A  I  R  E  Q  K  G  Q  Y  S  N  R  Y  S  F  T  N  K  W  R  L  L  L  L  V  N  M  Y  R  A  P  S  S  D  R  A  S  W  L  S  V  R  C  C  N  P  C  S  N  V  K  P  A  *  R  F  C  F  N  C  S  F  R  G  S  L  Q  S  V  *  C  I  R  Y  V  S  H  *  R  S  S  L  R  A  A  V  N  T  R  H  C  N  L  Q  N  R  D  H  F  L  F  F  I  S  I  L  C  *  T  R  V  Q  Y  I  R  K  W  L  L  L  F  N  A  P  V  N  P  V  Y  E  I  H  F  S  R  T  Y  L  D  N  R  G  S  S  R  D  H  F  K  Q  D  H  S  V  R  V  N  V  P  F  L  *  W  F  H  H  F  *  R  L  G  S  L  V  A  R  T  R  C  C  S  *  C  N  C  P  G  L  *  W  R  T  A  L  L  T  L  L  W  F  L  R  G  H  V  V  G  L  Q  R  R  G  C  S  S  Y  I  S  K  T  S  K  S  K  V  R  D  F  G  L  H  V  V  P  K  *  Y  I  R  R  L  *  I  A  V  N  I  F  L  G  T  V  L  M  *  I  N  Q  T  F  C  S  S  L   </second_frame>
            <third_frame>   T  R  K  S  L  L  S  E  S  K  K  A  N  I  Q  T  D  I  P  S  Q  T  S  G  D  Y  Y  C  *  S  I  C  I  A  H  Q  A  V  I  V  L  H  G  Y  R  L  D  A  V  I  L  A  A  M  *  S  Q  P  E  G  S  V  S  I  V  H  S  E  E  A  C  S  L  S  N  A  S  D  M  C  L  I  E  G  L  L  S  G  L  L  *  T  H  A  I  A  I  F  K  T  A  I  I  S  S  S  L  S  A  S  C  A  K  H  E  S  N  T  S  E  S  G  F  F  S  S  M  H  Q  *  I  Q  F  T  R  S  I  S  V  E  P  T  W  I  I  G  V  L  P  V  I  I  S  S  K  I  T  P  Y  E  *  M  S  H  F  C  D  G  F  T  T  F  N  A  S  G  A  W  *  Q  E  P  D  V  V  V  D  V  T  V  P  D  S  D  G  A  L  P  C  L  L  C  C  G  F  S  E  V  M  W  L  D  C  N  V  G  D  V  P  A  I  L  A  R  R  P  S  P  K  S  E  I  L  G  S  M  S  C  P  S  N  I  L  E  G  F  R  S  P  *  T  Y  F  L  G  L  Y  S  C  K  *  T  K  P  F  A  V  P  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14761" stop="15030"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLQQCEASLKVLFQLFIQRKLAVCLMHQICVSLKVFSPGCCEHTPLQSSKPRSFPLLYQHLVLNTSPIHPKVASSLQCTSESSLRDPFQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15150" stop="15362"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEPDVVVDVTVPDSDGALPCLLCCGFSEVMWLDCNVGDVPAILARRPSPKSEILGSMSCPSNILEGFRSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17328" PGL_stop="16139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17328" e_stop="16595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="17328" e_stop="16595" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17328" stop="16595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17328" stop="16694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426662" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTGTTTTTCCCCAAAGTTGAGAAAAACATTAATCAATTTTCCCAACGTCTCTTTATTTGCTTAGCTGAAATCACCTTTACCTTTTCTCACTCTCAAAAGTCTCACCTTTCACACTCTTTTTTCTCTCATAAGCTCCATTCTTGATTATCTGTTGTACAAAAGGTAAGGTCTTTGAGACACCCTTTTGCTCATTTCTCATTTTTTTCAGCTGTGTCACTGTTCTTGATTTCATCATATTTGTAGATAAAAAAAAAATGCAATCTTTTTTGTGTTTTAGCATTTTCTTGATTCTGTGTAGTTGTTGTGTTTTTGTTACTTCTTTGAATGATGAAGGGATAGCTCTTTGGTCATTTAAAAAGGGTATTGGACAAGACCCTGAAGGGTCACTTAAAAATTGGAACTTTTCTGATGAAACCCCTTGTTCTTGGAATGGTGTTACATGCAAAGACCTAAAAGTTGTATCTGTTAGTATACCTAGAAAGAAACTCACTGGGTTTCTTTCTTCTAGTCTTGGATCTCTTACTGAGCTTAGACATGTTAATTTAAGAAGTAATTTGTTTTCTGGTAGTTTGCCTGTTGAGCTTTTTGAGGTTCAAGGTTTGCAAAGTTTGGTTCTTTATGGGAATTCCTTTTCTGGGGTTATACCTTTTGAGGTTGGGAAGCTAAATTATCTTCAAACTTTGGATTTATCACAAAATTTCTTGAATGGGTCTGTGCCTATAACATTGCTTC</gDNA_template>
            <first_frame> V  C  F  S  P  K  L  R  K  T  L  I  N  F  P  N  V  S  L  F  A  *  L  K  S  P  L  P  F  L  T  L  K  S  L  T  F  H  T  L  F  S  L  I  S  S  I  L  D  Y  L  L  Y  K  R  *  G  L  *  D  T  L  L  L  I  S  H  F  F  Q  L  C  H  C  S  *  F  H  H  I  C  R  *  K  K  N  A  I  F  F  V  F  *  H  F  L  D  S  V  *  L  L  C  F  C  Y  F  F  E  *  *  R  D  S  S  L  V  I  *  K  G  Y  W  T  R  P  *  R  V  T  *  K  L  E  L  F  *  *  N  P  L  F  L  E  W  C  Y  M  Q  R  P  K  S  C  I  C  *  Y  T  *  K  E  T  H  W  V  S  F  F  *  S  W  I  S  Y  *  A  *  T  C  *  F  K  K  *  F  V  F  W  *  F  A  C  *  A  F  *  G  S  R  F  A  K  F  G  S  L  W  E  F  L  F  W  G  Y  T  F  *  G  W  E  A  K  L  S  S  N  F  G  F  I  T  K  F  L  E  W  V  C  A  Y  N  I  A   </first_frame>
            <second_frame>  F  V  F  P  Q  S  *  E  K  H  *  S  I  F  P  T  S  L  Y  L  L  S  *  N  H  L  Y  L  F  S  L  S  K  V  S  P  F  T  L  F  F  L  S  *  A  P  F  L  I  I  C  C  T  K  G  K  V  F  E  T  P  F  C  S  F  L  I  F  F  S  C  V  T  V  L  D  F  I  I  F  V  D  K  K  K  M  Q  S  F  L  C  F  S  I  F  L  I  L  C  S  C  C  V  F  V  T  S  L  N  D  E  G  I  A  L  W  S  F  K  K  G  I  G  Q  D  P  E  G  S  L  K  N  W  N  F  S  D  E  T  P  C  S  W  N  G  V  T  C  K  D  L  K  V  V  S  V  S  I  P  R  K  K  L  T  G  F  L  S  S  S  L  G  S  L  T  E  L  R  H  V  N  L  R  S  N  L  F  S  G  S  L  P  V  E  L  F  E  V  Q  G  L  Q  S  L  V  L  Y  G  N  S  F  S  G  V  I  P  F  E  V  G  K  L  N  Y  L  Q  T  L  D  L  S  Q  N  F  L  N  G  S  V  P  I  T  L  L  </second_frame>
            <third_frame>   L  F  F  P  K  V  E  K  N  I  N  Q  F  S  Q  R  L  F  I  C  L  A  E  I  T  F  T  F  S  H  S  Q  K  S  H  L  S  H  S  F  F  S  H  K  L  H  S  *  L  S  V  V  Q  K  V  R  S  L  R  H  P  F  A  H  F  S  F  F  S  A  V  S  L  F  L  I  S  S  Y  L  *  I  K  K  K  C  N  L  F  C  V  L  A  F  S  *  F  C  V  V  V  V  F  L  L  L  L  *  M  M  K  G  *  L  F  G  H  L  K  R  V  L  D  K  T  L  K  G  H  L  K  I  G  T  F  L  M  K  P  L  V  L  G  M  V  L  H  A  K  T  *  K  L  Y  L  L  V  Y  L  E  R  N  S  L  G  F  F  L  L  V  L  D  L  L  L  S  L  D  M  L  I  *  E  V  I  C  F  L  V  V  C  L  L  S  F  L  R  F  K  V  C  K  V  W  F  F  M  G  I  P  F  L  G  L  Y  L  L  R  L  G  S  *  I  I  F  K  L  W  I  Y  H  K  I  S  *  M  G  L  C  L  *  H  C  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17195" stop="16596"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APFLIICCTKGKVFETPFCSFLIFFSCVTVLDFIIFVDKKKMQSFLCFSIFLILCSCCVFVTSLNDEGIALWSFKKGIGQDPEGSLKNWNFSDETPCSWNGVTCKDLKVVSVSIPRKKLTGFLSSSLGSLTELRHVNLRSNLFSGSLPVELFEVQGLQSLVLYGNSFSGVIPFEVGKLNYLQTLDLSQNFLNGSVPITLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17221" e_stop="17165"/>
            <exon e_start="16534" e_stop="16139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.843" e_score="0.947"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="17221" e_stop="17165" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.843">
            <gDNA_intron_boundary i_start="17164" i_stop="16535" i_length="630"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="16534" e_stop="16139" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17221" stop="17165"/>
              <exon start="16534" stop="16139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCACACTCTTTTTTCTCTCATAAGCTCCATTCTTGATTATCTGTTGTACAAAAG : AAGGGTTTGGGGGTAATTTGTCTGCATTGGAAGAACTTAATCTTGGATTCAACAAATTTGGTGGTAAAATTCCAACTGATTTGGGAAATTTGTCTAATTTGAAAGGAACTGTTGATTTGTCTCATAATATGTTTAGTGGTTCAATTCCGGCTAGTCTTGGTAATCTTCCTGAGAAGGTGTATATTGATTTGACTTATAACAATTTGAGTGGTCCAATTCCACAAAATGGTGCTTTGATTAACAGAGGACCTACTGCTTTTATTGGAAATCTTGGGCTCTGTGGACCTCCATTGAAAAACCCGTGTTCTGCGCAAAGTGACGCGAGTTCACCGTCCTCGGAACCTTTCTTGCCTAATAACATACCTCCATTAGATGGTGCTGGAGGGGATGTGAATG</gDNA_template>
            <first_frame> L  S  H  S  F  F  S  H  K  L  H  S  *  L  S  V  V  Q  K  :  K  G  L  G  V  I  C  L  H  W  K  N  L  I  L  D  S  T  N  L  V  V  K  F  Q  L  I  W  E  I  C  L  I  *  K  E  L  L  I  C  L  I  I  C  L  V  V  Q  F  R  L  V  L  V  I  F  L  R  R  C  I  L  I  *  L  I  T  I  *  V  V  Q  F  H  K  M  V  L  *  L  T  E  D  L  L  L  L  L  E  I  L  G  S  V  D  L  H  *  K  T  R  V  L  R  K  V  T  R  V  H  R  P  R  N  L  S  C  L  I  T  Y  L  H  *  M  V  L  E  G  M  *  M </first_frame>
            <second_frame>  F  H  T  L  F  S  L  I  S  S  I  L  D  Y  L  L  Y  K  R :   R  V  W  G  *  F  V  C  I  G  R  T  *  S  W  I  Q  Q  I  W  W  *  N  S  N  *  F  G  K  F  V  *  F  E  R  N  C  *  F  V  S  *  Y  V  *  W  F  N  S  G  *  S  W  *  S  S  *  E  G  V  Y  *  F  D  L  *  Q  F  E  W  S  N  S  T  K  W  C  F  D  *  Q  R  T  Y  C  F  Y  W  K  S  W  A  L  W  T  S  I  E  K  P  V  F  C  A  K  *  R  E  F  T  V  L  G  T  F  L  A  *  *  H  T  S  I  R  W  C  W  R  G  C  E   </second_frame>
            <third_frame>   F  T  L  F  F  L  S  *  A  P  F  L  I  I  C  C  T  K   : E  G  F  G  G  N  L  S  A  L  E  E  L  N  L  G  F  N  K  F  G  G  K  I  P  T  D  L  G  N  L  S  N  L  K  G  T  V  D  L  S  H  N  M  F  S  G  S  I  P  A  S  L  G  N  L  P  E  K  V  Y  I  D  L  T  Y  N  N  L  S  G  P  I  P  Q  N  G  A  L  I  N  R  G  P  T  A  F  I  G  N  L  G  L  C  G  P  P  L  K  N  P  C  S  A  Q  S  D  A  S  S  P  S  S  E  P  F  L  P  N  N  I  P  P  L  D  G  A  G  G  D  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17195" stop="17165"/>
                    <exon start="16534" stop="16140"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APFLIICCTKEGFGGNLSALEELNLGFNKFGGKIPTDLGNLSNLKGTVDLSHNMFSGSIPASLGNLPEKVYIDLTYNNLSGPIPQNGALINRGPTAFIGNLGLCGPPLKNPCSAQSDASSPSSEPFLPNNIPPLDGAGGDVN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="21270" PGL_stop="29625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21270" e_stop="21386"/>
            <exon e_start="21470" e_stop="21568"/>
            <exon e_start="21660" e_stop="21744"/>
            <exon e_start="22685" e_stop="22754"/>
            <exon e_start="23600" e_stop="23660"/>
            <exon e_start="23773" e_stop="23826"/>
            <exon e_start="24655" e_stop="24811"/>
            <exon e_start="24889" e_stop="24979"/>
            <exon e_start="25110" e_stop="25219"/>
            <exon e_start="28505" e_stop="28611"/>
            <exon e_start="29024" e_stop="29134"/>
            <exon e_start="29228" e_stop="29625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.036" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.030" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.207" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21270" e_stop="21386" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21387" i_stop="21469" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21470" e_stop="21568" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.036" acc_prob="0.994">
            <gDNA_intron_boundary i_start="21569" i_stop="21659" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21660" e_stop="21744" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.874" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21745" i_stop="22684" i_length="940"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22685" e_stop="22754" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.967" acc_prob="0.030">
            <gDNA_intron_boundary i_start="22755" i_stop="23599" i_length="845"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23600" e_stop="23660" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.832">
            <gDNA_intron_boundary i_start="23661" i_stop="23772" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23773" e_stop="23826" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23827" i_stop="24654" i_length="828"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24655" e_stop="24811" e_length="157"/>
          </exon>
          <intron i_serial="7" don_prob="0.207" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24812" i_stop="24888" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24889" e_stop="24979" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="24980" i_stop="25109" i_length="130"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25110" e_stop="25219" e_length="110"/>
          </exon>
          <intron i_serial="9" don_prob="0.862" acc_prob="0.927">
            <gDNA_intron_boundary i_start="25220" i_stop="28504" i_length="3285"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="28505" e_stop="28611" e_length="107"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.865">
            <gDNA_intron_boundary i_start="28612" i_stop="29023" i_length="412"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="29024" e_stop="29134" e_length="111"/>
          </exon>
          <intron i_serial="11" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29135" i_stop="29227" i_length="93"/>
          </intron>
          <exon e_serial="12" e_score="0.982">
            <gDNA_exon_boundary e_start="29228" e_stop="29625" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21270" stop="21386"/>
              <exon start="21470" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24811"/>
              <exon start="24889" stop="24901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21274" stop="21386"/>
              <exon start="21470" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21275" stop="21386"/>
              <exon start="21470" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24811"/>
              <exon start="24889" stop="24947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21290" stop="21386"/>
              <exon start="21470" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24811"/>
              <exon start="24889" stop="24970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21378" stop="21386"/>
              <exon start="21470" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24811"/>
              <exon start="24889" stop="24979"/>
              <exon start="25110" stop="25219"/>
              <exon start="28505" stop="28611"/>
              <exon start="29024" stop="29045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21382" stop="21386"/>
              <exon start="21470" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24811"/>
              <exon start="24889" stop="24979"/>
              <exon start="25110" stop="25134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25145" stop="25219"/>
              <exon start="28505" stop="28611"/>
              <exon start="29024" stop="29134"/>
              <exon start="29228" stop="29617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25162" stop="25219"/>
              <exon start="28505" stop="28611"/>
              <exon start="29024" stop="29134"/>
              <exon start="29228" stop="29501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25194" stop="25219"/>
              <exon start="28505" stop="28611"/>
              <exon start="29024" stop="29134"/>
              <exon start="29228" stop="29625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATCAACGGCGACGGCGACGGCGACGATGACCGATAGTTGCCGCCGAGCTCTAGTGGAAGCTATACATTCGTCTCCTACTCAAGCTGTTATTTATCTTTCCGGCGGAGCCTCTCAG : GCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAG : GTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAG : GTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAG : GTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAG : GGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAG : GCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTG : ACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGATGGTCACCTTAAGCTCGTGGAAATTGCGACCAG : TATATGCGGTGGTGGATATCCATGTTTTGAGTTGTCAGCTGTCAATGCAGACAAACCTCCATTGGAAATACCTCAAATCAATGATCGTGTTAAACAATTTGAAAAAGTTG : GAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCAT : CCAAAGTACTATGGTAATGACTATGGGAAGATGTTGGAGATACTTCTGGGATGTAAAAACACGGGATGTACTTTCCTAGTGGGTGGTCGGAATGTTAATGGAATTTTCAAG : GTTCTTGAGGATTTCGACATCCCAGCAGAGCTAAAAGACATGTTTGTGCCTATACCAGTCGAGAAATTCCGTATGGATATATCATCCACTGAAATTCGAAAGACTCAAGGACTCTTGTAAGCCCATTTGCATTATTTTCACTCAGGTATCTGCATTGGTTCCGTTTAAACAATTAGTTCTATCTATGTAACATGAAAATAAGCGCCAAAAAGGAAAAAAACCGAAAGCTTATCCATTTTCATCGTTTGCTCTTTCCAGTCTCAACAGAACTGAGAATGTGTGGAATTGTTGTTCTCTGATTTGAGTTTCCTTACTAACATATGTATATTAAACAGTTCTTGGTTTTAAACATAATCAGATTCTGTCAATTTTATGCCCAAATCGTTGACAACCTTTTT</gDNA_template>
            <first_frame> P  S  T  A  T  A  T  A  T  M  T  D  S  C  R  R  A  L  V  E  A  I  H  S  S  P  T  Q  A  V  I  Y  L  S  G  G  A  S  Q  :  A  L  G  W  L  M  S  V  P  G  A  S  N  T  V  L  E  S  V  V  T  Y  S  R  M  S  M  I  Q  L  L  G  K  :  V  P  A  Q  A  A  S  S  Q  T  A  E  E  M  A  L  L  A  Y  N  R  A  L  K  L  S  K  P   : G  S  P  V  L  G  V  G  F  T  G  A  L  A  S  A  Q  P  K  R  G  D  H  R :   F  H  V  S  T  R  T  S  D  R  F  W  T  S  T  V  T  L  T  K  :  G  L  R  T  R  E  Q  E  D  G  V  S  S  Q  Y  L  I  K  :  A  I  A  N  A  S  K  V  P  G  T  F  V  P  D  L  T  E  S  E  V  P  D  E  Y  E  K  N  F  D  E  E  E  E  L  K  Q  L  L  S  G  I  I  C  F  K  V  Y  P  F  S  S   : D  S  S  N  V  E  R  K  I  I  L  S  G  S  F  N  P  L  H  D  G  H  L  K  L  V  E  I  A  T  S :   I  C  G  G  G  Y  P  C  F  E  L  S  A  V  N  A  D  K  P  P  L  E  I  P  Q  I  N  D  R  V  K  Q  F  E  K  V   : G  K  T  V  I  V  S  N  Q  P  Y  F  Y  K  K  A  E  L  F  P  G  S  A  F  V  I  G  A  D  T  V  A  R  L  V  H  :  P  K  Y  Y  G  N  D  Y  G  K  M  L  E  I  L  L  G  C  K  N  T  G  C  T  F  L  V  G  G  R  N  V  N  G  I  F  K  :  V  L  E  D  F  D  I  P  A  E  L  K  D  M  F  V  P  I  P  V  E  K  F  R  M  D  I  S  S  T  E  I  R  K  T  Q  G  L  L  *  A  H  L  H  Y  F  H  S  G  I  C  I  G  S  V  *  T  I  S  S  I  Y  V  T  *  K  *  A  P  K  R  K  K  T  E  S  L  S  I  F  I  V  C  S  F  Q  S  Q  Q  N  *  E  C  V  E  L  L  F  S  D  L  S  F  L  T  N  I  C  I  L  N  S  S  W  F  *  T  *  S  D  S  V  N  F  M  P  K  S  L  T  T  F   </first_frame>
            <second_frame>  H  Q  R  R  R  R  R  R  R  *  P  I  V  A  A  E  L  *  W  K  L  Y  I  R  L  L  L  K  L  L  F  I  F  P  A  E  P  L  R :   R  W  G  G  *  C  Q  F  R  E  H  R  T  L  C  L  N  L  *  L  H  I  P  E  C  L  *  F  N  Y  L  A  R :   F  L  L  K  L  L  V  R  K  R  R  R  K  W  H  C  W  L  T  I  E  H  *  S  F  L  N  Q  :  V  H  Q  F  *  V  W  V  L  L  V  P  W  L  V  H  N  Q  N  V  E  I  I   : G  F  T  C  Q  P  E  H  L  T  G  F  G  P  R  Q  L  L  *  L  R :   V  C  E  L  V  S  R  K  M  E  F  R  V  N  T  *  S  R :   Q  L  R  M  L  A  R  F  Q  E  L  L  F  Q  T  *  L  N  Q  K  F  Q  M  N  M  K  R  I  L  M  K  R  K  S  *  S  N  F  S  V  G  L  Y  A  S  K  C  I  L  S  Q  V  :  T  R  L  M  *  R  G  K  *  S  C  L  V  P  L  I  H  C  M  M  V  T  L  S  S  W  K  L  R  P   : V  Y  A  V  V  D  I  H  V  L  S  C  Q  L  S  M  Q  T  N  L  H  W  K  Y  L  K  S  M  I  V  L  N  N  L  K  K  L  :  E  R  R  S  *  Y  L  T  S  H  I  F  T  R  K  Q  N  F  F  L  E  V  L  L  S  L  V  Q  T  Q  L  Q  D  L  C  I :   Q  S  T  M  V  M  T  M  G  R  C  W  R  Y  F  W  D  V  K  T  R  D  V  L  S  *  W  V  V  G  M  L  M  E  F  S  R :   F  L  R  I  S  T  S  Q  Q  S  *  K  T  C  L  C  L  Y  Q  S  R  N  S  V  W  I  Y  H  P  L  K  F  E  R  L  K  D  S  C  K  P  I  C  I  I  F  T  Q  V  S  A  L  V  P  F  K  Q  L  V  L  S  M  *  H  E  N  K  R  Q  K  G  K  K  P  K  A  Y  P  F  S  S  F  A  L  S  S  L  N  R  T  E  N  V  W  N  C  C  S  L  I  *  V  S  L  L  T  Y  V  Y  *  T  V  L  G  F  K  H  N  Q  I  L  S  I  L  C  P  N  R  *  Q  P  F  </second_frame>
            <third_frame>   I  N  G  D  G  D  G  D  D  D  R  *  L  P  P  S  S  S  G  S  Y  T  F  V  S  Y  S  S  C  Y  L  S  F  R  R  S  L  S   : G  A  G  V  V  D  V  S  S  G  S  I  E  H  C  A  *  I  C  S  Y  I  F  Q  N  V  Y  D  S  I  T  W  Q   : G  S  C  S  S  C  *  F  A  N  G  G  G  N  G  I  V  G  L  Q  *  S  I  K  A  F  *  T  R :   F  T  S  S  R  C  G  F  Y  W  C  L  G  *  C  T  T  K  T  W  R  S  *  :  V  S  R  V  N  Q  N  I  *  P  V  L  D  L  D  S  Y  F  D  *   : G  S  A  N  S  *  A  G  R  W  S  F  E  S  I  L  N  Q   : G  N  C  E  C  *  Q  G  S  R  N  F  C  S  R  L  D  *  I  R  S  S  R  *  I  *  K  E  F  *  *  R  G  R  A  K  A  T  S  Q  W  D  Y  M  L  Q  S  V  S  F  L  K  * :   L  V  *  C  R  E  E  N  N  P  V  W  F  L  *  S  I  A  *  W  S  P  *  A  R  G  N  C  D  Q  :  Y  M  R  W  W  I  S  M  F  *  V  V  S  C  Q  C  R  Q  T  S  I  G  N  T  S  N  Q  *  S  C  *  T  I  *  K  S  W :   K  D  G  H  S  I  *  P  A  I  F  L  Q  E  S  R  T  F  S  W  K  C  F  C  H  W  C  R  H  S  C  K  T  C  A   : S  K  V  L  W  *  *  L  W  E  D  V  G  D  T  S  G  M  *  K  H  G  M  Y  F  P  S  G  W  S  E  C  *  W  N  F  Q   : G  S  *  G  F  R  H  P  S  R  A  K  R  H  V  C  A  Y  T  S  R  E  I  P  Y  G  Y  I  I  H  *  N  S  K  D  S  R  T  L  V  S  P  F  A  L  F  S  L  R  Y  L  H  W  F  R  L  N  N  *  F  Y  L  C  N  M  K  I  S  A  K  K  E  K  N  R  K  L  I  H  F  H  R  L  L  F  P  V  S  T  E  L  R  M  C  G  I  V  V  L  *  F  E  F  P  Y  *  H  M  Y  I  K  Q  F  L  V  L  N  I  I  R  F  C  Q  F  Y  A  Q  I  V  D  N  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21270" stop="21386"/>
                    <exon start="21470" stop="21568"/>
                    <exon start="21660" stop="21744"/>
                    <exon start="22685" stop="22754"/>
                    <exon start="23600" stop="23660"/>
                    <exon start="23773" stop="23826"/>
                    <exon start="24655" stop="24811"/>
                    <exon start="24889" stop="24979"/>
                    <exon start="25110" stop="25219"/>
                    <exon start="28505" stop="28611"/>
                    <exon start="29024" stop="29134"/>
                    <exon start="29228" stop="29347"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSTATATATMTDSCRRALVEAIHSSPTQAVIYLSGGASQALGWLMSVPGASNTVLESVVTYSRMSMIQLLGKVPAQAASSQTAEEMALLAYNRALKLSKPGSPVLGVGFTGALASAQPKRGDHRFHVSTRTSDRFWTSTVTLTKGLRTREQEDGVSSQYLIKAIANASKVPGTFVPDLTESEVPDEYEKNFDEEEELKQLLSGIICFKVYPFSSDSSNVERKIILSGSFNPLHDGHLKLVEIATSICGGGYPCFELSAVNADKPPLEIPQINDRVKQFEKVGKTVIVSNQPYFYKKAELFPGSAFVIGADTVARLVHPKYYGNDYGKMLEILLGCKNTGCTFLVGGRNVNGIFKVLEDFDIPAELKDMFVPIPVEKFRMDISSTEIRKTQGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21270" e_stop="21386"/>
            <exon e_start="21470" e_stop="21568"/>
            <exon e_start="21660" e_stop="21744"/>
            <exon e_start="22685" e_stop="22754"/>
            <exon e_start="23600" e_stop="23660"/>
            <exon e_start="23773" e_stop="23826"/>
            <exon e_start="24655" e_stop="24811"/>
            <exon e_start="24889" e_stop="24979"/>
            <exon e_start="25110" e_stop="25219"/>
            <exon e_start="28505" e_stop="28611"/>
            <exon e_start="29024" e_stop="29134"/>
            <exon e_start="29337" e_stop="29597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.036" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.030" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.207" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.955"/>
          <exon-only e_score="0.874"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21270" e_stop="21386" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21387" i_stop="21469" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21470" e_stop="21568" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.036" acc_prob="0.994">
            <gDNA_intron_boundary i_start="21569" i_stop="21659" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21660" e_stop="21744" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.874" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21745" i_stop="22684" i_length="940"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22685" e_stop="22754" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.967" acc_prob="0.030">
            <gDNA_intron_boundary i_start="22755" i_stop="23599" i_length="845"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23600" e_stop="23660" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.832">
            <gDNA_intron_boundary i_start="23661" i_stop="23772" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23773" e_stop="23826" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23827" i_stop="24654" i_length="828"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24655" e_stop="24811" e_length="157"/>
          </exon>
          <intron i_serial="7" don_prob="0.207" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24812" i_stop="24888" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24889" e_stop="24979" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="24980" i_stop="25109" i_length="130"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25110" e_stop="25219" e_length="110"/>
          </exon>
          <intron i_serial="9" don_prob="0.862" acc_prob="0.927">
            <gDNA_intron_boundary i_start="25220" i_stop="28504" i_length="3285"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="28505" e_stop="28611" e_length="107"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.865">
            <gDNA_intron_boundary i_start="28612" i_stop="29023" i_length="412"/>
          </intron>
          <exon e_serial="11" e_score="0.955">
            <gDNA_exon_boundary e_start="29024" e_stop="29134" e_length="111"/>
          </exon>
          <intron i_serial="11" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29135" i_stop="29336" i_length="202"/>
          </intron>
          <exon e_serial="12" e_score="0.874">
            <gDNA_exon_boundary e_start="29337" e_stop="29597" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21270" stop="21386"/>
              <exon start="21470" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24811"/>
              <exon start="24889" stop="24901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21274" stop="21386"/>
              <exon start="21470" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21275" stop="21386"/>
              <exon start="21470" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24811"/>
              <exon start="24889" stop="24947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21290" stop="21386"/>
              <exon start="21470" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24811"/>
              <exon start="24889" stop="24970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21378" stop="21386"/>
              <exon start="21470" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24811"/>
              <exon start="24889" stop="24979"/>
              <exon start="25110" stop="25219"/>
              <exon start="28505" stop="28611"/>
              <exon start="29024" stop="29045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21382" stop="21386"/>
              <exon start="21470" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24811"/>
              <exon start="24889" stop="24979"/>
              <exon start="25110" stop="25134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24967" stop="24979"/>
              <exon start="25110" stop="25219"/>
              <exon start="28505" stop="28611"/>
              <exon start="29024" stop="29134"/>
              <exon start="29337" stop="29597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423841" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATCAACGGCGACGGCGACGGCGACGATGACCGATAGTTGCCGCCGAGCTCTAGTGGAAGCTATACATTCGTCTCCTACTCAAGCTGTTATTTATCTTTCCGGCGGAGCCTCTCAG : GCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAG : GTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAG : GTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAG : GTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAG : GGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAG : GCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTG : ACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGATGGTCACCTTAAGCTCGTGGAAATTGCGACCAG : TATATGCGGTGGTGGATATCCATGTTTTGAGTTGTCAGCTGTCAATGCAGACAAACCTCCATTGGAAATACCTCAAATCAATGATCGTGTTAAACAATTTGAAAAAGTTG : GAAAGACGGTCATAGTATCTAACCAGCCATATTTTTACAAGAAAGCAGAACTTTTTCCTGGAAGTGCTTTTGTCATTGGTGCAGACACAGTTGCAAGACTTGTGCAT : CCAAAGTACTATGGTAATGACTATGGGAAGATGTTGGAGATACTTCTGGGATGTAAAAACACGGGATGTACTTTCCTAGTGGGTGGTCGGAATGTTAATGGAATTTTCAAG : GACTCTTGTAAGCCCATTTGCATTATTTTCACTCAGGTATCTGCATTGGTTCCGTTTAAACAATTAGTTCTATCTATGTAACATGAAAATAAGCGCCAAAAAGGAAAAAAACCGAAAGCTTATCCATTTTCATCGTTTGCTCTTTCCAGTCTCAACAGAACTGAGAATGTGTGGAATTGTTGTTCTCTGATTTGAGTTTCCTTACTAACATATGTATATTAAACAGTTCTTGGTTTTAAACATAATCAGATTCTGTCAATT</gDNA_template>
            <first_frame> P  S  T  A  T  A  T  A  T  M  T  D  S  C  R  R  A  L  V  E  A  I  H  S  S  P  T  Q  A  V  I  Y  L  S  G  G  A  S  Q  :  A  L  G  W  L  M  S  V  P  G  A  S  N  T  V  L  E  S  V  V  T  Y  S  R  M  S  M  I  Q  L  L  G  K  :  V  P  A  Q  A  A  S  S  Q  T  A  E  E  M  A  L  L  A  Y  N  R  A  L  K  L  S  K  P   : G  S  P  V  L  G  V  G  F  T  G  A  L  A  S  A  Q  P  K  R  G  D  H  R :   F  H  V  S  T  R  T  S  D  R  F  W  T  S  T  V  T  L  T  K  :  G  L  R  T  R  E  Q  E  D  G  V  S  S  Q  Y  L  I  K  :  A  I  A  N  A  S  K  V  P  G  T  F  V  P  D  L  T  E  S  E  V  P  D  E  Y  E  K  N  F  D  E  E  E  E  L  K  Q  L  L  S  G  I  I  C  F  K  V  Y  P  F  S  S   : D  S  S  N  V  E  R  K  I  I  L  S  G  S  F  N  P  L  H  D  G  H  L  K  L  V  E  I  A  T  S :   I  C  G  G  G  Y  P  C  F  E  L  S  A  V  N  A  D  K  P  P  L  E  I  P  Q  I  N  D  R  V  K  Q  F  E  K  V   : G  K  T  V  I  V  S  N  Q  P  Y  F  Y  K  K  A  E  L  F  P  G  S  A  F  V  I  G  A  D  T  V  A  R  L  V  H  :  P  K  Y  Y  G  N  D  Y  G  K  M  L  E  I  L  L  G  C  K  N  T  G  C  T  F  L  V  G  G  R  N  V  N  G  I  F  K  :  D  S  C  K  P  I  C  I  I  F  T  Q  V  S  A  L  V  P  F  K  Q  L  V  L  S  M  *  H  E  N  K  R  Q  K  G  K  K  P  K  A  Y  P  F  S  S  F  A  L  S  S  L  N  R  T  E  N  V  W  N  C  C  S  L  I  *  V  S  L  L  T  Y  V  Y  *  T  V  L  G  F  K  H  N  Q  I  L  S  I </first_frame>
            <second_frame>  H  Q  R  R  R  R  R  R  R  *  P  I  V  A  A  E  L  *  W  K  L  Y  I  R  L  L  L  K  L  L  F  I  F  P  A  E  P  L  R :   R  W  G  G  *  C  Q  F  R  E  H  R  T  L  C  L  N  L  *  L  H  I  P  E  C  L  *  F  N  Y  L  A  R :   F  L  L  K  L  L  V  R  K  R  R  R  K  W  H  C  W  L  T  I  E  H  *  S  F  L  N  Q  :  V  H  Q  F  *  V  W  V  L  L  V  P  W  L  V  H  N  Q  N  V  E  I  I   : G  F  T  C  Q  P  E  H  L  T  G  F  G  P  R  Q  L  L  *  L  R :   V  C  E  L  V  S  R  K  M  E  F  R  V  N  T  *  S  R :   Q  L  R  M  L  A  R  F  Q  E  L  L  F  Q  T  *  L  N  Q  K  F  Q  M  N  M  K  R  I  L  M  K  R  K  S  *  S  N  F  S  V  G  L  Y  A  S  K  C  I  L  S  Q  V  :  T  R  L  M  *  R  G  K  *  S  C  L  V  P  L  I  H  C  M  M  V  T  L  S  S  W  K  L  R  P   : V  Y  A  V  V  D  I  H  V  L  S  C  Q  L  S  M  Q  T  N  L  H  W  K  Y  L  K  S  M  I  V  L  N  N  L  K  K  L  :  E  R  R  S  *  Y  L  T  S  H  I  F  T  R  K  Q  N  F  F  L  E  V  L  L  S  L  V  Q  T  Q  L  Q  D  L  C  I :   Q  S  T  M  V  M  T  M  G  R  C  W  R  Y  F  W  D  V  K  T  R  D  V  L  S  *  W  V  V  G  M  L  M  E  F  S  R :   T  L  V  S  P  F  A  L  F  S  L  R  Y  L  H  W  F  R  L  N  N  *  F  Y  L  C  N  M  K  I  S  A  K  K  E  K  N  R  K  L  I  H  F  H  R  L  L  F  P  V  S  T  E  L  R  M  C  G  I  V  V  L  *  F  E  F  P  Y  *  H  M  Y  I  K  Q  F  L  V  L  N  I  I  R  F  C  Q   </second_frame>
            <third_frame>   I  N  G  D  G  D  G  D  D  D  R  *  L  P  P  S  S  S  G  S  Y  T  F  V  S  Y  S  S  C  Y  L  S  F  R  R  S  L  S   : G  A  G  V  V  D  V  S  S  G  S  I  E  H  C  A  *  I  C  S  Y  I  F  Q  N  V  Y  D  S  I  T  W  Q   : G  S  C  S  S  C  *  F  A  N  G  G  G  N  G  I  V  G  L  Q  *  S  I  K  A  F  *  T  R :   F  T  S  S  R  C  G  F  Y  W  C  L  G  *  C  T  T  K  T  W  R  S  *  :  V  S  R  V  N  Q  N  I  *  P  V  L  D  L  D  S  Y  F  D  *   : G  S  A  N  S  *  A  G  R  W  S  F  E  S  I  L  N  Q   : G  N  C  E  C  *  Q  G  S  R  N  F  C  S  R  L  D  *  I  R  S  S  R  *  I  *  K  E  F  *  *  R  G  R  A  K  A  T  S  Q  W  D  Y  M  L  Q  S  V  S  F  L  K  * :   L  V  *  C  R  E  E  N  N  P  V  W  F  L  *  S  I  A  *  W  S  P  *  A  R  G  N  C  D  Q  :  Y  M  R  W  W  I  S  M  F  *  V  V  S  C  Q  C  R  Q  T  S  I  G  N  T  S  N  Q  *  S  C  *  T  I  *  K  S  W :   K  D  G  H  S  I  *  P  A  I  F  L  Q  E  S  R  T  F  S  W  K  C  F  C  H  W  C  R  H  S  C  K  T  C  A   : S  K  V  L  W  *  *  L  W  E  D  V  G  D  T  S  G  M  *  K  H  G  M  Y  F  P  S  G  W  S  E  C  *  W  N  F  Q   : G  L  L  *  A  H  L  H  Y  F  H  S  G  I  C  I  G  S  V  *  T  I  S  S  I  Y  V  T  *  K  *  A  P  K  R  K  K  T  E  S  L  S  I  F  I  V  C  S  F  Q  S  Q  Q  N  *  E  C  V  E  L  L  F  S  D  L  S  F  L  T  N  I  C  I  L  N  S  S  W  F  *  T  *  S  D  S  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21270" stop="21386"/>
                    <exon start="21470" stop="21568"/>
                    <exon start="21660" stop="21744"/>
                    <exon start="22685" stop="22754"/>
                    <exon start="23600" stop="23660"/>
                    <exon start="23773" stop="23826"/>
                    <exon start="24655" stop="24811"/>
                    <exon start="24889" stop="24979"/>
                    <exon start="25110" stop="25219"/>
                    <exon start="28505" stop="28611"/>
                    <exon start="29024" stop="29134"/>
                    <exon start="29337" stop="29417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSTATATATMTDSCRRALVEAIHSSPTQAVIYLSGGASQALGWLMSVPGASNTVLESVVTYSRMSMIQLLGKVPAQAASSQTAEEMALLAYNRALKLSKPGSPVLGVGFTGALASAQPKRGDHRFHVSTRTSDRFWTSTVTLTKGLRTREQEDGVSSQYLIKAIANASKVPGTFVPDLTESEVPDEYEKNFDEEEELKQLLSGIICFKVYPFSSDSSNVERKIILSGSFNPLHDGHLKLVEIATSICGGGYPCFELSAVNADKPPLEIPQINDRVKQFEKVGKTVIVSNQPYFYKKAELFPGSAFVIGADTVARLVHPKYYGNDYGKMLEILLGCKNTGCTFLVGGRNVNGIFKDSCKPICIIFTQVSALVPFKQLVLSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="26633" e_stop="27461"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="26633" e_stop="27461" e_length="829"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26633" stop="27403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26786" stop="27461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26786" stop="27430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408807" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAGATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAAGGATATTTGGTTTAGCAATGACGGGTCGAAGTTTTTGGCAGCTGGCTATGATAAGCACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACATTCTCGACAAGTAATATACCCTATGTAGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGAACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGATTGTGACTTATAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCTGGTTGTTATTAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTTGCCCCATCCAAATGGAAATTGGATTGCAGCACGAAGTCTGGATAACCAGATTCTTATTTGTAGTACGCGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTTGCTGGTTATGCCTGCCAGTTCAATTTCTCACCAGATGGATGGTTTGTCTTGTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAGGGTCTTCAGAACTCCCAAGTGTCATGAAGGGGTCTGTATTGGTGCAGAGTGGCATCCTCCGGAACAAAGTAAAGTTGCTACATGTGGTTGGGA</gDNA_template>
            <first_frame> V  F  P  *  A  W  S  F  D  F  V  S  W  D  G  Y  K  G  E  D  L  G  C  L  Q  F  R  *  M  Y  E  D  L  H  G  A  Y  K  G  S  E  G  Y  L  V  *  Q  *  R  V  E  V  F  G  S  W  L  *  *  A  H  *  V  L  G  Y  R  N  R  T  S  N  S  N  I  L  D  K  *  Y  T  L  C  S  E  A  *  S  *  *  G  *  A  E  *  T  F  G  W  N  E  *  *  E  D  C  A  V  G  Y  K  Q  W  T  D  Y  T  R  V  R  S  T  S  G  G  S  *  Y  N  Y  L  C  G  *  *  *  E  D  C  D  L  *  *  *  *  I  T  T  C  L  G  I  W  Y  S  G  C  Y  *  V  Y  K  *  T  P  Y  A  F  H  A  I  Y  F  A  P  S  K  W  K  L  D  C  S  T  K  S  G  *  P  D  S  Y  L  *  Y  A  R  D  F  S  *  I  K  R  K  D  L  L  D  T  L  L  L  V  M  P  A  S  S  I  S  H  Q  M  D  G  L  S  C  Q  E  M  V  K  A  D  A  G  F  G  I  G  N  R  V  G  S  S  E  L  P  S  V  M  K  G  S  V  L  V  Q  S  G  I  L  R  N  K  V  K  L  L  H  V  V  G  </first_frame>
            <second_frame>  F  F  P  K  H  G  H  L  I  L  S  A  G  M  D  T  K  V  K  I  W  D  V  Y  N  S  G  K  C  M  R  T  Y  M  G  H  T  K  A  V  K  D  I  W  F  S  N  D  G  S  K  F  L  A  A  G  Y  D  K  H  I  K  Y  W  D  T  E  T  G  Q  V  I  Q  T  F  S  T  S  N  I  P  Y  V  V  R  L  N  P  D  E  D  K  Q  N  E  L  L  A  G  M  S  D  K  K  I  V  Q  W  D  I  N  S  G  Q  I  T  Q  E  Y  D  Q  H  L  G  A  V  N  T  I  T  F  V  D  N  N  R  R  I  V  T  Y  S  D  D  K  S  L  R  V  W  E  Y  G  I  L  V  V  I  K  Y  I  S  E  P  H  M  H  S  M  P  S  I  L  P  H  P  N  G  N  W  I  A  A  R  S  L  D  N  Q  I  L  I  C  S  T  R  E  I  S  A  E  *  K  E  K  I  C  W  T  H  C  C  W  L  C  L  P  V  Q  F  L  T  R  W  M  V  C  L  V  R  R  W  *  R  Q  M  L  V  L  G  L  E  I  V  *  G  L  Q  N  S  Q  V  S  *  R  G  L  Y  W  C  R  V  A  S  S  G  T  K  *  S  C  Y  M  W  L  G </second_frame>
            <third_frame>   F  S  L  S  M  V  I  *  F  C  Q  L  G  W  I  Q  R  *  R  F  G  M  F  T  I  P  V  N  V  *  G  L  T  W  G  I  Q  R  Q  *  R  I  F  G  L  A  M  T  G  R  S  F  W  Q  L  A  M  I  S  T  L  S  I  G  I  Q  K  Q  D  K  *  F  K  H  S  R  Q  V  I  Y  P  M  *  *  G  L  I  L  M  R  I  S  R  M  N  F  W  L  E  *  V  I  R  R  L  C  S  G  I  *  T  V  D  R  L  H  K  S  T  I  N  I  W  G  Q  L  I  Q  L  P  L  W  I  I  I  G  G  L  *  L  I  V  M  I  N  H  Y  V  F  G  N  M  V  F  W  L  L  L  S  I  *  V  N  P  I  C  I  P  C  H  L  F  C  P  I  Q  M  E  I  G  L  Q  H  E  V  W  I  T  R  F  L  F  V  V  R  E  R  F  Q  L  N  K  K  K  R  F  A  G  H  I  V  A  G  Y  A  C  Q  F  N  F  S  P  D  G  W  F  V  L  S  G  D  G  E  G  R  C  W  F  W  D  W  K  S  C  R  V  F  R  T  P  K  C  H  E  G  V  C  I  G  A  E  W  H  P  P  E  Q  S  K  V  A  T  C  G  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26634" stop="27239"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFPKHGHLILSAGMDTKVKIWDVYNSGKCMRTYMGHTKAVKDIWFSNDGSKFLAAGYDKHIKYWDTETGQVIQTFSTSNIPYVVRLNPDEDKQNELLAGMSDKKIVQWDINSGQITQEYDQHLGAVNTITFVDNNRRIVTYSDDKSLRVWEYGILVVIKYISEPHMHSMPSILPHPNGNWIAARSLDNQILICSTREISAE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27236" stop="27460"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKRKDLLDTLLLVMPASSISHQMDGLSCQEMVKADAGFGIGNRVGSSELPSVMKGSVLVQSGILRNKVKLLHVVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="21466" e_stop="21568"/>
            <exon e_start="21660" e_stop="21744"/>
            <exon e_start="22685" e_stop="22754"/>
            <exon e_start="23600" e_stop="23660"/>
            <exon e_start="23773" e_stop="23826"/>
            <exon e_start="24655" e_stop="24811"/>
            <exon e_start="24889" e_stop="24947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.036" acc_prob="0.994" e_score="0.990"/>
          <exon-intron don_prob="0.874" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.030" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.207" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="21466" e_stop="21568" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.036" acc_prob="0.994">
            <gDNA_intron_boundary i_start="21569" i_stop="21659" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21660" e_stop="21744" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.874" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21745" i_stop="22684" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22685" e_stop="22754" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.030">
            <gDNA_intron_boundary i_start="22755" i_stop="23599" i_length="845"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23600" e_stop="23660" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.832">
            <gDNA_intron_boundary i_start="23661" i_stop="23772" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23773" e_stop="23826" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23827" i_stop="24654" i_length="828"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24655" e_stop="24811" e_length="157"/>
          </exon>
          <intron i_serial="6" don_prob="0.207" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24812" i_stop="24888" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24889" e_stop="24947" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21466" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24811"/>
              <exon start="24889" stop="24947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293572" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21466" stop="21568"/>
              <exon start="21660" stop="21744"/>
              <exon start="22685" stop="22754"/>
              <exon start="23600" stop="23660"/>
              <exon start="23773" stop="23826"/>
              <exon start="24655" stop="24811"/>
              <exon start="24889" stop="24947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293571" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGGCGCTGGGGTGGTTGATGTCAGTTCCGGGAGCATCGAACACTGTGCTTGAATCTGTAGTTACATATTCCAGAATGTCTATGATTCAATTACTTGGCAAG : GTTCCTGCTCAAGCTGCTAGTTCGCAAACGGCGGAGGAAATGGCATTGTTGGCTTACAATAGAGCATTAAAGCTTTCTAAACCAG : GTTCACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAG : GTTTCACGTGTCAACCAGAACATCTGACCGGTTTTGGACCTCGACAGTTACTTTGACTAAG : GGTCTGCGAACTCGTGAGCAGGAAGATGGAGTTTCGAGTCAATACTTAATCAAG : GCAATTGCGAATGCTAGCAAGGTTCCAGGAACTTTTGTTCCAGACTTGACTGAATCAGAAGTTCCAGATGAATATGAAAAGAATTTTGATGAAGAGGAAGAGCTAAAGCAACTTCTCAGTGGGATTATATGCTTCAAAGTGTATCCTTTCTCAAGTG : ACTCGTCTAATGTAGAGAGGAAAATAATCCTGTCTGGTTCCTTTAATCCATTGCATGAT</gDNA_template>
            <first_frame> T  G  A  G  V  V  D  V  S  S  G  S  I  E  H  C  A  *  I  C  S  Y  I  F  Q  N  V  Y  D  S  I  T  W  Q   : G  S  C  S  S  C  *  F  A  N  G  G  G  N  G  I  V  G  L  Q  *  S  I  K  A  F  *  T  R :   F  T  S  S  R  C  G  F  Y  W  C  L  G  *  C  T  T  K  T  W  R  S  *  :  V  S  R  V  N  Q  N  I  *  P  V  L  D  L  D  S  Y  F  D  *   : G  S  A  N  S  *  A  G  R  W  S  F  E  S  I  L  N  Q   : G  N  C  E  C  *  Q  G  S  R  N  F  C  S  R  L  D  *  I  R  S  S  R  *  I  *  K  E  F  *  *  R  G  R  A  K  A  T  S  Q  W  D  Y  M  L  Q  S  V  S  F  L  K  * :   L  V  *  C  R  E  E  N  N  P  V  W  F  L  *  S  I  A  *  </first_frame>
            <second_frame>  Q  A  L  G  W  L  M  S  V  P  G  A  S  N  T  V  L  E  S  V  V  T  Y  S  R  M  S  M  I  Q  L  L  G  K  :  V  P  A  Q  A  A  S  S  Q  T  A  E  E  M  A  L  L  A  Y  N  R  A  L  K  L  S  K  P   : G  S  P  V  L  G  V  G  F  T  G  A  L  A  S  A  Q  P  K  R  G  D  H  R :   F  H  V  S  T  R  T  S  D  R  F  W  T  S  T  V  T  L  T  K  :  G  L  R  T  R  E  Q  E  D  G  V  S  S  Q  Y  L  I  K  :  A  I  A  N  A  S  K  V  P  G  T  F  V  P  D  L  T  E  S  E  V  P  D  E  Y  E  K  N  F  D  E  E  E  E  L  K  Q  L  L  S  G  I  I  C  F  K  V  Y  P  F  S  S   : D  S  S  N  V  E  R  K  I  I  L  S  G  S  F  N  P  L  H  D </second_frame>
            <third_frame>   R  R  W  G  G  *  C  Q  F  R  E  H  R  T  L  C  L  N  L  *  L  H  I  P  E  C  L  *  F  N  Y  L  A  R :   F  L  L  K  L  L  V  R  K  R  R  R  K  W  H  C  W  L  T  I  E  H  *  S  F  L  N  Q  :  V  H  Q  F  *  V  W  V  L  L  V  P  W  L  V  H  N  Q  N  V  E  I  I   : G  F  T  C  Q  P  E  H  L  T  G  F  G  P  R  Q  L  L  *  L  R :   V  C  E  L  V  S  R  K  M  E  F  R  V  N  T  *  S  R :   Q  L  R  M  L  A  R  F  Q  E  L  L  F  Q  T  *  L  N  Q  K  F  Q  M  N  M  K  R  I  L  M  K  R  K  S  *  S  N  F  S  V  G  L  Y  A  S  K  C  I  L  S  Q  V  :  T  R  L  M  *  R  G  K  *  S  C  L  V  P  L  I  H  C  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21467" stop="21568"/>
                    <exon start="21660" stop="21744"/>
                    <exon start="22685" stop="22754"/>
                    <exon start="23600" stop="23660"/>
                    <exon start="23773" stop="23826"/>
                    <exon start="24655" stop="24811"/>
                    <exon start="24889" stop="24947"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QALGWLMSVPGASNTVLESVVTYSRMSMIQLLGKVPAQAASSQTAEEMALLAYNRALKLSKPGSPVLGVGFTGALASAQPKRGDHRFHVSTRTSDRFWTSTVTLTKGLRTREQEDGVSSQYLIKAIANASKVPGTFVPDLTESEVPDEYEKNFDEEEELKQLLSGIICFKVYPFSSDSSNVERKIILSGSFNPLHD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="38483" PGL_stop="41858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38483" e_stop="39315"/>
            <exon e_start="39959" e_stop="39970"/>
            <exon e_start="40034" e_stop="40039"/>
            <exon e_start="40219" e_stop="40237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.508" acc_prob="0.566" e_score="0.750"/>
          <exon-intron don_prob="0.900" acc_prob="0.687" e_score="0.667"/>
          <exon-only e_score="0.632"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="38483" e_stop="39315" e_length="833"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39316" i_stop="39958" i_length="643"/>
          </intron>
          <exon e_serial="2" e_score="0.750">
            <gDNA_exon_boundary e_start="39959" e_stop="39970" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.508" acc_prob="0.566">
            <gDNA_intron_boundary i_start="39971" i_stop="40033" i_length="63"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="40034" e_stop="40039" e_length="6"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.687">
            <gDNA_intron_boundary i_start="40040" i_stop="40218" i_length="179"/>
          </intron>
          <exon e_serial="4" e_score="0.632">
            <gDNA_exon_boundary e_start="40219" e_stop="40237" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38483" stop="39041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38486" stop="39122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="39211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="38996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="38944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="38931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="38893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38490" stop="39218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38492" stop="39077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38495" stop="39085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38495" stop="38863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38502" stop="39034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38504" stop="38944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38509" stop="38901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38511" stop="39150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38511" stop="38860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38518" stop="38995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38530" stop="39193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38699" stop="39315"/>
              <exon start="39959" stop="39970"/>
              <exon start="40034" stop="40039"/>
              <exon start="40219" stop="40237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38700" stop="39315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38700" stop="39311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38700" stop="39293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38706" stop="39066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337556" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAACAACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGATCAAATAGTAAATGTGTTTTTTA : TCAATAAAGAAA : AAAATT : AAAACCAAACCAAGAACTA</gDNA_template>
            <first_frame> N  N  N  N  L  V  L  S  S  L  T  T  H  T  H  *  I  I  Q  N  D  N  E  V  C  V  Y  F  C  N  C  T  F  L  G  F  C  S  R  N  *  G  N  K  S  K  C  E  L  Q  S  I  A  T  K  C  M  C  K  C  H  N  I  I  N  N  S  K  F  N  L  L  L  K  V  E  R  T  K  A  M  S  L  Q  I  H  E  G  S  K  T  S  K  D  D  F  F  S  *  C  K  E  S  C  H  Y  L  W  F  P  F  P  K  L  L  R  K  I  Y  V  P  F  L  Y  Y  *  P  F  N  I  G  L  R  R  V  Y  M  E  *  H  G  K  T  S  T  E  K  S  H  I  V  D  P  Y  L  F  V  V  V  V  C  C  L  L  *  L  A  F  H  V  E  L  R  *  F  Y  M  E  *  H  G  Q  *  G  V  I  *  S  I  R  L  V  W  D  *  D  A  C  S  C  Y  I  C  C  C  I  L  *  L  A  F  M  F  K  I  L  *  L  R  C  L  F  S  C  C  *  R  V  *  Y  I  S  L  M  L  F  F  N  *  *  Y  I  N  V  G  V  N  Y  L  *  K  M  L  I  N  V  G  C  C  N  S  S  F  L  Q  E  K  C  V  *  S  N  S  K  C  V  F  Y :   Q  *  R  K :   K  L :   K  P  N  Q  E  L </first_frame>
            <second_frame>  T  T  T  T  *  Y  S  H  H  L  P  H  T  H  I  R  S  S  K  M  T  M  R  F  V  S  I  F  A  I  V  L  F  L  V  F  V  Q  E  T  K  V  T  K  A  N  V  S  C  N  P  L  Q  L  S  A  C  A  N  A  I  T  S  S  T  T  P  S  S  I  C  C  S  K  L  K  E  Q  R  P  C  L  C  K  Y  M  K  D  P  R  L  Q  K  M  I  S  S  P  N  A  K  K  V  A  T  T  C  G  S  P  F  P  N  C  *  E  K  F  M  S  H  F  Y  I  I  S  L  L  I  L  A  Y  D  A  F  I  W  S  N  M  V  R  P  V  L  K  R  V  I  *  S  T  P  T  C  L  *  *  L  F  V  V  F  Y  N  *  P  F  M  S  S  *  D  D  F  I  W  S  N  M  V  S  E  E  S  Y  S  Q  S  D  L  F  G  T  E  T  H  V  V  V  T  F  V  V  V  F  Y  N  *  L  L  C  L  R  Y  Y  D  *  D  V  Y  F  L  V  V  E  E  C  N  I  Y  P  *  C  C  S  S  I  S  N  I  L  M  L  E  L  I  I  F  E  K  C  *  L  M  L  V  V  V  I  L  V  F  F  K  K  N  V  F  D  Q  I  V  N  V  F  F   : I  N  K  E   : K  N   : *  N  Q  T  K  N   </second_frame>
            <third_frame>   Q  Q  Q  L  S  T  L  I  T  Y  H  T  H  T  L  D  H  P  K  *  Q  *  G  L  C  L  F  L  Q  L  Y  F  S  W  F  L  F  K  K  L  R  *  Q  K  Q  M  *  V  A  I  H  C  N  *  V  H  V  Q  M  P  *  H  H  Q  Q  L  Q  V  Q  F  V  A  Q  S  *  K  N  K  G  H  V  F  A  N  T  *  R  I  Q  D  F  K  R  *  F  L  L  L  M  Q  R  K  L  P  L  L  V  V  P  L  S  Q  I  A  K  K  N  L  C  P  I  S  I  L  L  A  F  *  Y  W  P  T  T  R  L  Y  G  V  T  W  *  D  Q  Y  *  K  E  S  Y  S  R  P  L  L  V  C  S  S  C  L  L  S  S  I  I  S  L  S  C  R  A  K  M  I  L  Y  G  V  T  W  S  V  R  S  H  I  V  N  P  T  C  L  G  L  R  R  M  *  L  L  H  L  L  L  Y  S  I  I  S  F  Y  V  *  D  I  M  T  K  M  S  I  F  L  L  L  K  S  V  I  Y  I  L  N  V  V  L  Q  L  V  I  Y  *  C  W  S  *  L  S  L  K  N  V  N  *  C  W  L  L  *  F  *  F  S  S  R  K  M  C  L  I  K  *  *  M  C  F  L  :  S  I  K  K  :  K  I  :  K  T  K  P  R  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38499" stop="38828"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSHHLPHTHIRSSKMTMRFVSIFAIVLFLVFVQETKVTKANVSCNPLQLSACANAITSSTTPSSICCSKLKEQRPCLCKYMKDPRLQKMISSPNAKKVATTCGSPFPNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38483" e_stop="39327"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="38483" e_stop="39327" e_length="845"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38483" stop="39041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38486" stop="39122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="39211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="38996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="38944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="38931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="38893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38490" stop="39218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38492" stop="39077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38495" stop="39085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38495" stop="38863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38502" stop="39034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38504" stop="38944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38509" stop="38901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38511" stop="39150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38511" stop="38860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38518" stop="38995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38530" stop="39193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38700" stop="39315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38700" stop="39311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38700" stop="39293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38706" stop="39066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38816" stop="39327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318713" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAACAACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTAATTATCTTTGAAAAATGTTAATTAATGTTGGTTGTTGTAATTCTAGTTTTCTTCAAGAAAAATGTGTTTGATCAAATAGTAAATGTGTTTTTTAATGATGTCTTCT</gDNA_template>
            <first_frame> N  N  N  N  L  V  L  S  S  L  T  T  H  T  H  *  I  I  Q  N  D  N  E  V  C  V  Y  F  C  N  C  T  F  L  G  F  C  S  R  N  *  G  N  K  S  K  C  E  L  Q  S  I  A  T  K  C  M  C  K  C  H  N  I  I  N  N  S  K  F  N  L  L  L  K  V  E  R  T  K  A  M  S  L  Q  I  H  E  G  S  K  T  S  K  D  D  F  F  S  *  C  K  E  S  C  H  Y  L  W  F  P  F  P  K  L  L  R  K  I  Y  V  P  F  L  Y  Y  *  P  F  N  I  G  L  R  R  V  Y  M  E  *  H  G  K  T  S  T  E  K  S  H  I  V  D  P  Y  L  F  V  V  V  V  C  C  L  L  *  L  A  F  H  V  E  L  R  *  F  Y  M  E  *  H  G  Q  *  G  V  I  *  S  I  R  L  V  W  D  *  D  A  C  S  C  Y  I  C  C  C  I  L  *  L  A  F  M  F  K  I  L  *  L  R  C  L  F  S  C  C  *  R  V  *  Y  I  S  L  M  L  F  F  N  *  *  Y  I  N  V  G  V  N  Y  L  *  K  M  L  I  N  V  G  C  C  N  S  S  F  L  Q  E  K  C  V  *  S  N  S  K  C  V  F  *  *  C  L   </first_frame>
            <second_frame>  T  T  T  T  *  Y  S  H  H  L  P  H  T  H  I  R  S  S  K  M  T  M  R  F  V  S  I  F  A  I  V  L  F  L  V  F  V  Q  E  T  K  V  T  K  A  N  V  S  C  N  P  L  Q  L  S  A  C  A  N  A  I  T  S  S  T  T  P  S  S  I  C  C  S  K  L  K  E  Q  R  P  C  L  C  K  Y  M  K  D  P  R  L  Q  K  M  I  S  S  P  N  A  K  K  V  A  T  T  C  G  S  P  F  P  N  C  *  E  K  F  M  S  H  F  Y  I  I  S  L  L  I  L  A  Y  D  A  F  I  W  S  N  M  V  R  P  V  L  K  R  V  I  *  S  T  P  T  C  L  *  *  L  F  V  V  F  Y  N  *  P  F  M  S  S  *  D  D  F  I  W  S  N  M  V  S  E  E  S  Y  S  Q  S  D  L  F  G  T  E  T  H  V  V  V  T  F  V  V  V  F  Y  N  *  L  L  C  L  R  Y  Y  D  *  D  V  Y  F  L  V  V  E  E  C  N  I  Y  P  *  C  C  S  S  I  S  N  I  L  M  L  E  L  I  I  F  E  K  C  *  L  M  L  V  V  V  I  L  V  F  F  K  K  N  V  F  D  Q  I  V  N  V  F  F  N  D  V  F  </second_frame>
            <third_frame>   Q  Q  Q  L  S  T  L  I  T  Y  H  T  H  T  L  D  H  P  K  *  Q  *  G  L  C  L  F  L  Q  L  Y  F  S  W  F  L  F  K  K  L  R  *  Q  K  Q  M  *  V  A  I  H  C  N  *  V  H  V  Q  M  P  *  H  H  Q  Q  L  Q  V  Q  F  V  A  Q  S  *  K  N  K  G  H  V  F  A  N  T  *  R  I  Q  D  F  K  R  *  F  L  L  L  M  Q  R  K  L  P  L  L  V  V  P  L  S  Q  I  A  K  K  N  L  C  P  I  S  I  L  L  A  F  *  Y  W  P  T  T  R  L  Y  G  V  T  W  *  D  Q  Y  *  K  E  S  Y  S  R  P  L  L  V  C  S  S  C  L  L  S  S  I  I  S  L  S  C  R  A  K  M  I  L  Y  G  V  T  W  S  V  R  S  H  I  V  N  P  T  C  L  G  L  R  R  M  *  L  L  H  L  L  L  Y  S  I  I  S  F  Y  V  *  D  I  M  T  K  M  S  I  F  L  L  L  K  S  V  I  Y  I  L  N  V  V  L  Q  L  V  I  Y  *  C  W  S  *  L  S  L  K  N  V  N  *  C  W  L  L  *  F  *  F  S  S  R  K  M  C  L  I  K  *  *  M  C  F  L  M  M  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38499" stop="38828"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSHHLPHTHIRSSKMTMRFVSIFAIVLFLVFVQETKVTKANVSCNPLQLSACANAITSSTTPSSICCSKLKEQRPCLCKYMKDPRLQKMISSPNAKKVATTCGSPFPNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="38483" e_stop="39221"/>
            <exon e_start="40034" e_stop="40039"/>
            <exon e_start="41710" e_stop="41727"/>
            <exon e_start="41830" e_stop="41858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.566" e_score="0.995"/>
          <exon-intron don_prob="0.900" acc_prob="0.769" e_score="0.667"/>
          <exon-intron don_prob="0.790" acc_prob="0.982" e_score="0.556"/>
          <exon-only e_score="0.655"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="38483" e_stop="39221" e_length="739"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.566">
            <gDNA_intron_boundary i_start="39222" i_stop="40033" i_length="812"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="40034" e_stop="40039" e_length="6"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.769">
            <gDNA_intron_boundary i_start="40040" i_stop="41709" i_length="1670"/>
          </intron>
          <exon e_serial="3" e_score="0.556">
            <gDNA_exon_boundary e_start="41710" e_stop="41727" e_length="18"/>
          </exon>
          <intron i_serial="3" don_prob="0.790" acc_prob="0.982">
            <gDNA_intron_boundary i_start="41728" i_stop="41829" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.655">
            <gDNA_exon_boundary e_start="41830" e_stop="41858" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38483" stop="39041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38486" stop="39122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="39211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="38996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="38944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="38931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="38893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38490" stop="39218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38492" stop="39077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38495" stop="39085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38495" stop="38863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38502" stop="39034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38504" stop="38944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38509" stop="38901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38511" stop="39150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38511" stop="38860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38518" stop="38995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38530" stop="39193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38706" stop="39066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38946" stop="39221"/>
              <exon start="40034" stop="40039"/>
              <exon start="41710" stop="41727"/>
              <exon start="41830" stop="41858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336866" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAACAACAACTTAGTACTCTCATCACTTACCACACACACACATTAGATCATCCAAAATGACAATGAGGTTTGTGTCTATTTTTGCAATTGTACTTTTCTTGGTTTTTGTTCAAGAAACTAAGGTAACAAAAGCAAATGTGAGTTGCAATCCATTGCAACTAAGTGCATGTGCAAATGCCATAACATCATCAACAACTCCAAGTTCAATTTGTTGCTCAAAGTTGAAAGAACAAAGGCCATGTCTTTGCAAATACATGAAGGATCCAAGACTTCAAAAGATGATTTCTTCTCCTAATGCAAAGAAAGTTGCCACTACTTGTGGTTCCCCTTTCCCAAATTGCTAAGAAAAATTTATGTCCCATTTCTATATTATTAGCCTTTTAATATTGGCCTACGACGCGTTTATATGGAGTAACATGGTAAGACCAGTACTGAAAAGAGTCATATAGTCGACCCCTACTTGTTTGTAGTAGTTGTTTGTTGTCTTCTATAATTAGCCTTTCATGTCGAGCTAAGATGATTTTATATGGAGTAACATGGTCAGTGAGGAGTCATATAGTCAATCCGACTTGTTTGGGACTGAGACGCATGTAGTTGTTACATTTGTTGTTGTATTCTATAATTAGCTTTTATGTTTAAGATATTATGACTAAGATGTCTATTTTCTTGTTGTTGAAGAGTGTAATATATATCCTTAATGTTGTTCTTCAATTAGTAATATATTAATGTTGGAGTTA : AAAATT : AAACACTAACCGACAAAG : GAAAAAAATACAAAATTTGGACTAAAGCT</gDNA_template>
            <first_frame> N  N  N  N  L  V  L  S  S  L  T  T  H  T  H  *  I  I  Q  N  D  N  E  V  C  V  Y  F  C  N  C  T  F  L  G  F  C  S  R  N  *  G  N  K  S  K  C  E  L  Q  S  I  A  T  K  C  M  C  K  C  H  N  I  I  N  N  S  K  F  N  L  L  L  K  V  E  R  T  K  A  M  S  L  Q  I  H  E  G  S  K  T  S  K  D  D  F  F  S  *  C  K  E  S  C  H  Y  L  W  F  P  F  P  K  L  L  R  K  I  Y  V  P  F  L  Y  Y  *  P  F  N  I  G  L  R  R  V  Y  M  E  *  H  G  K  T  S  T  E  K  S  H  I  V  D  P  Y  L  F  V  V  V  V  C  C  L  L  *  L  A  F  H  V  E  L  R  *  F  Y  M  E  *  H  G  Q  *  G  V  I  *  S  I  R  L  V  W  D  *  D  A  C  S  C  Y  I  C  C  C  I  L  *  L  A  F  M  F  K  I  L  *  L  R  C  L  F  S  C  C  *  R  V  *  Y  I  S  L  M  L  F  F  N  *  *  Y  I  N  V  G  V   : K  N   : *  T  L  T  D  K   : G  K  K  Y  K  I  W  T  K  A </first_frame>
            <second_frame>  T  T  T  T  *  Y  S  H  H  L  P  H  T  H  I  R  S  S  K  M  T  M  R  F  V  S  I  F  A  I  V  L  F  L  V  F  V  Q  E  T  K  V  T  K  A  N  V  S  C  N  P  L  Q  L  S  A  C  A  N  A  I  T  S  S  T  T  P  S  S  I  C  C  S  K  L  K  E  Q  R  P  C  L  C  K  Y  M  K  D  P  R  L  Q  K  M  I  S  S  P  N  A  K  K  V  A  T  T  C  G  S  P  F  P  N  C  *  E  K  F  M  S  H  F  Y  I  I  S  L  L  I  L  A  Y  D  A  F  I  W  S  N  M  V  R  P  V  L  K  R  V  I  *  S  T  P  T  C  L  *  *  L  F  V  V  F  Y  N  *  P  F  M  S  S  *  D  D  F  I  W  S  N  M  V  S  E  E  S  Y  S  Q  S  D  L  F  G  T  E  T  H  V  V  V  T  F  V  V  V  F  Y  N  *  L  L  C  L  R  Y  Y  D  *  D  V  Y  F  L  V  V  E  E  C  N  I  Y  P  *  C  C  S  S  I  S  N  I  L  M  L  E  L  :  K  I  :  K  H  *  P  T  K  :  E  K  N  T  K  F  G  L  K   </second_frame>
            <third_frame>   Q  Q  Q  L  S  T  L  I  T  Y  H  T  H  T  L  D  H  P  K  *  Q  *  G  L  C  L  F  L  Q  L  Y  F  S  W  F  L  F  K  K  L  R  *  Q  K  Q  M  *  V  A  I  H  C  N  *  V  H  V  Q  M  P  *  H  H  Q  Q  L  Q  V  Q  F  V  A  Q  S  *  K  N  K  G  H  V  F  A  N  T  *  R  I  Q  D  F  K  R  *  F  L  L  L  M  Q  R  K  L  P  L  L  V  V  P  L  S  Q  I  A  K  K  N  L  C  P  I  S  I  L  L  A  F  *  Y  W  P  T  T  R  L  Y  G  V  T  W  *  D  Q  Y  *  K  E  S  Y  S  R  P  L  L  V  C  S  S  C  L  L  S  S  I  I  S  L  S  C  R  A  K  M  I  L  Y  G  V  T  W  S  V  R  S  H  I  V  N  P  T  C  L  G  L  R  R  M  *  L  L  H  L  L  L  Y  S  I  I  S  F  Y  V  *  D  I  M  T  K  M  S  I  F  L  L  L  K  S  V  I  Y  I  L  N  V  V  L  Q  L  V  I  Y  *  C  W  S  * :   K  L :   N  T  N  R  Q  R :   K  K  I  Q  N  L  D  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38499" stop="38828"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSHHLPHTHIRSSKMTMRFVSIFAIVLFLVFVQETKVTKANVSCNPLQLSACANAITSSTTPSSICCSKLKEQRPCLCKYMKDPRLQKMISSPNAKKVATTCGSPFPNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="39973" e_stop="40355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39973" e_stop="40355" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39973" stop="40355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288176" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACACCATTCTTTTCATTTCATAGTTTGTTCACTTACATAGAATTACAAAATAAACTGCAGAAAATTGTACCCTTTTTCAAGTTCACTACCAAGAAAATCATAGAGATCATAATCTACAATAACCTCCTCACAAAAGCTATTACAGACACGATGTGGACGCGAATTGGTGCTTAATACGAATTTACTTAAATTCCTACGAGCTACGTTCATATATAATATATTATGTATGTAACTATGGATGGTAGAAAACCAAACCAAGAACTAGAACTCTTCATGTTTGAGTTCCTCATCGAAACATCTTGTTCGAATTGTAAATGCAACGGACCTTTTAGAAGAAACACGGATTCAGCCTTTTCTTTCAGTAGATTCGGTATAGTTAGAT</gDNA_template>
            <first_frame> D  T  I  L  F  I  S  *  F  V  H  L  H  R  I  T  K  *  T  A  E  N  C  T  L  F  Q  V  H  Y  Q  E  N  H  R  D  H  N  L  Q  *  P  P  H  K  S  Y  Y  R  H  D  V  D  A  N  W  C  L  I  R  I  Y  L  N  S  Y  E  L  R  S  Y  I  I  Y  Y  V  C  N  Y  G  W  *  K  T  K  P  R  T  R  T  L  H  V  *  V  P  H  R  N  I  L  F  E  L  *  M  Q  R  T  F  *  K  K  H  G  F  S  L  F  F  Q  *  I  R  Y  S  *   </first_frame>
            <second_frame>  T  P  F  F  S  F  H  S  L  F  T  Y  I  E  L  Q  N  K  L  Q  K  I  V  P  F  F  K  F  T  T  K  K  I  I  E  I  I  I  Y  N  N  L  L  T  K  A  I  T  D  T  M  W  T  R  I  G  A  *  Y  E  F  T  *  I  P  T  S  Y  V  H  I  *  Y  I  M  Y  V  T  M  D  G  R  K  P  N  Q  E  L  E  L  F  M  F  E  F  L  I  E  T  S  C  S  N  C  K  C  N  G  P  F  R  R  N  T  D  S  A  F  S  F  S  R  F  G  I  V  R  </second_frame>
            <third_frame>   H  H  S  F  H  F  I  V  C  S  L  T  *  N  Y  K  I  N  C  R  K  L  Y  P  F  S  S  S  L  P  R  K  S  *  R  S  *  S  T  I  T  S  S  Q  K  L  L  Q  T  R  C  G  R  E  L  V  L  N  T  N  L  L  K  F  L  R  A  T  F  I  Y  N  I  L  C  M  *  L  W  M  V  E  N  Q  T  K  N  *  N  S  S  C  L  S  S  S  S  K  H  L  V  R  I  V  N  A  T  D  L  L  E  E  T  R  I  Q  P  F  L  S  V  D  S  V  *  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0028N03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="39216" PGL_stop="38515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39216" e_stop="38515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="39216" e_stop="38515" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39216" stop="38515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAACATTAATATATTACTAATTGAAGAACAACATTAAGGATATATATTACACTCTTCAACAACAAGAAAATAGACATCTTAGTCATAATATCTTAAACATAAAAGCTAATTATAGAATACAACAACAAATGTAACAACTACATGCGTCTCAGTCCCAAACAAGTCGGATTGACTATATGACTCCTCACTGACCATGTTACTCCATATAAAATCATCTTAGCTCGACATGAAAGGCTAATTATAGAAGACAACAAACAACTACTACAAACAAGTAGGGGTCGACTATATGACTCTTTTCAGTACTGGTCTTACCATGTTACTCCATATAAACGCGTCGTAGGCCAATATTAAAAGGCTAATAATATAGAAATGGGACATAAATTTTTCTTAGCAATTTGGGAAAGGGGAACCACAAGTAGTGGCAACTTTCTTTGCATTAGGAGAAGAAATCATCTTTTGAAGTCTTGGATCCTTCATGTATTTGCAAAGACATGGCCTTTGTTCTTTCAACTTTGAGCAACAAATTGAACTTGGAGTTGTTGATGATGTTATGGCATTTGCACATGCACTTAGTTGCAATGGATTGCAACTCACATTTGCTTTTGTTACCTTAGTTTCTTGAACAAAAACCAAGAAAAGTACAATTGCAAAAATAGACACAAACCTCATTGTCATTTTGGATGATCTAATGTGTGTGTGTG</gDNA_template>
            <first_frame> P  T  L  I  Y  Y  *  L  K  N  N  I  K  D  I  Y  Y  T  L  Q  Q  Q  E  N  R  H  L  S  H  N  I  L  N  I  K  A  N  Y  R  I  Q  Q  Q  M  *  Q  L  H  A  S  Q  S  Q  T  S  R  I  D  Y  M  T  P  H  *  P  C  Y  S  I  *  N  H  L  S  S  T  *  K  A  N  Y  R  R  Q  Q  T  T  T  T  N  K  *  G  S  T  I  *  L  F  S  V  L  V  L  P  C  Y  S  I  *  T  R  R  R  P  I  L  K  G  *  *  Y  R  N  G  T  *  I  F  L  S  N  L  G  K  G  N  H  K  *  W  Q  L  S  L  H  *  E  K  K  S  S  F  E  V  L  D  P  S  C  I  C  K  D  M  A  F  V  L  S  T  L  S  N  K  L  N  L  E  L  L  M  M  L  W  H  L  H  M  H  L  V  A  M  D  C  N  S  H  L  L  L  L  P  *  F  L  E  Q  K  P  R  K  V  Q  L  Q  K  *  T  Q  T  S  L  S  F  W  M  I  *  C  V  C  V </first_frame>
            <second_frame>  Q  H  *  Y  I  T  N  *  R  T  T  L  R  I  Y  I  T  L  F  N  N  K  K  I  D  I  L  V  I  I  S  *  T  *  K  L  I  I  E  Y  N  N  K  C  N  N  Y  M  R  L  S  P  K  Q  V  G  L  T  I  *  L  L  T  D  H  V  T  P  Y  K  I  I  L  A  R  H  E  R  L  I  I  E  D  N  K  Q  L  L  Q  T  S  R  G  R  L  Y  D  S  F  Q  Y  W  S  Y  H  V  T  P  Y  K  R  V  V  G  Q  Y  *  K  A  N  N  I  E  M  G  H  K  F  F  L  A  I  W  E  R  G  T  T  S  S  G  N  F  L  C  I  R  R  R  N  H  L  L  K  S  W  I  L  H  V  F  A  K  T  W  P  L  F  F  Q  L  *  A  T  N  *  T  W  S  C  *  *  C  Y  G  I  C  T  C  T  *  L  Q  W  I  A  T  H  I  C  F  C  Y  L  S  F  L  N  K  N  Q  E  K  Y  N  C  K  N  R  H  K  P  H  C  H  F  G  *  S  N  V  C  V   </second_frame>
            <third_frame>   N  I  N  I  L  L  I  E  E  Q  H  *  G  Y  I  L  H  S  S  T  T  R  K  *  T  S  *  S  *  Y  L  K  H  K  S  *  L  *  N  T  T  T  N  V  T  T  T  C  V  S  V  P  N  K  S  D  *  L  Y  D  S  S  L  T  M  L  L  H  I  K  S  S  *  L  D  M  K  G  *  L  *  K  T  T  N  N  Y  Y  K  Q  V  G  V  D  Y  M  T  L  F  S  T  G  L  T  M  L  L  H  I  N  A  S  *  A  N  I  K  R  L  I  I  *  K  W  D  I  N  F  S  *  Q  F  G  K  G  E  P  Q  V  V  A  T  F  F  A  L  G  E  E  I  I  F  *  S  L  G  S  F  M  Y  L  Q  R  H  G  L  C  S  F  N  F  E  Q  Q  I  E  L  G  V  V  D  D  V  M  A  F  A  H  A  L  S  C  N  G  L  Q  L  T  F  A  F  V  T  L  V  S  *  T  K  T  K  K  S  T  I  A  K  I  D  T  N  L  I  V  I  L  D  D  L  M  C  V  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0028N03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44554" PGL_stop="39972"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44554" e_stop="44373"/>
            <exon e_start="43241" e_stop="43036"/>
            <exon e_start="40604" e_stop="39972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44554" e_stop="44373" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44372" i_stop="43242" i_length="1131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43241" e_stop="43036" e_length="206"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="43035" i_stop="40605" i_length="2431"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40604" e_stop="39972" e_length="633"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44554" stop="44373"/>
              <exon start="43241" stop="43036"/>
              <exon start="40604" stop="40112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44542" stop="44373"/>
              <exon start="43241" stop="43036"/>
              <exon start="40604" stop="40316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44522" stop="44373"/>
              <exon start="43241" stop="43036"/>
              <exon start="40604" stop="40177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44503" stop="44373"/>
              <exon start="43241" stop="43036"/>
              <exon start="40604" stop="40181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44494" stop="44373"/>
              <exon start="43241" stop="43036"/>
              <exon start="40604" stop="40423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44449" stop="44373"/>
              <exon start="43241" stop="43036"/>
              <exon start="40604" stop="40413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44405" stop="44373"/>
              <exon start="43241" stop="43036"/>
              <exon start="40604" stop="40330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43202" stop="43036"/>
              <exon start="40604" stop="39972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539943" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCGAATAAAAGTAAAGTAAAAGCTTCCCACTTACAAAAAAATAAGTATAGTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACG : GCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTG : GGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATGAAGAGTTCTAGTTCTTGGTTTGGTTTTCTACCATCCATAGTTACATACATAATATATTATATATGAACGTAGCTCGTAGGAATTTAAGTAAATTCGTATTAAGCACCAATTCGCGTCCACATCGTGTCTGTAATAGCTTTTGTGAGGAGGTTATTGTAGATTATGATCTCTATGATTTTCTTGGTAGTGAACTTGAAAAAGGGTACAATTTTCTGCAGTTTATTTTGTAATTCTATGTAAGTGAACAAACTATGAAATGAAAAGAATGGTGTCA</gDNA_template>
            <first_frame> I  R  I  K  V  K  *  K  L  P  T  Y  K  K  I  S  I  V  N  L  R  S  W  F  L  Q  C  G  Q  *  W  R  F  L  F  L  F  L  *  L  L  L  H  F  I  S  L  L  L  F  L  L  S  V  L  N  D  V  V  A  R :   R  K  L  Y  R  M  S  M  M  N  G  R  T  V  Y  M  E  R  M  L  L  Q  P  M  D  W  R  H  L  V  Y  F  *  L  A  K  R  W  L  T  A  L  P  S  A  C  V  L  E  E  E  *  W  V  A  V  L  L  L  V  P  F  S  F  L  S  S  P   : G  L  V  F  *  E  Q  K  H  A  Y  W  Q  D  Q  Q  R  M  H  T  I  Q  S  I  A  R  F  S  K  L  K  T  C  H  V  P  P  S  E  K  V  Y  L  L  L  A  L  P  *  R  Y  Y  Q  *  L  D  P  F  S  T  T  G  Y  T  R  R  L  I  P  V  D  G  K  N  T  K  T  K  D  L  E  W  Q  H  L  T  I  P  N  L  L  K  E  K  A  E  S  V  F  L  L  K  G  P  L  H  L  Q  F  E  Q  D  V  S  M  R  N  S  N  M  K  S  S  S  S  W  F  G  F  L  P  S  I  V  T  Y  I  I  Y  Y  I  *  T  *  L  V  G  I  *  V  N  S  Y  *  A  P  I  R  V  H  I  V  S  V  I  A  F  V  R  R  L  L  *  I  M  I  S  M  I  F  L  V  V  N  L  K  K  G  T  I  F  C  S  L  F  C  N  S  M  *  V  N  K  L  *  N  E  K  N  G  V  </first_frame>
            <second_frame>  F  E  *  K  *  S  K  S  F  P  L  T  K  K  *  V  *  *  I  *  E  V  G  F  C  S  V  V  S  N  G  G  F  Y  S  C  S  C  D  C  Y  C  T  S  S  H  C  F  C  S  C  C  R  C  *  T  T  S  *  H   : G  E  S  C  T  G  *  V  *  *  T  G  V  L  C  I  W  N  G  C  F  Y  S  L  W  I  G  G  I  W  F  T  S  D  *  P  N  V  G  *  R  H  Y  Q  V  L  V  F  W  K  R  N  D  G  W  Q  F  Y  Y  L  C  H  F  L  F  C  L  L  L  :  G  *  F  F  R  S  R  S  M  L  I  G  R  I  S  K  E  C  I  P  Y  K  V  S  R  G  F  P  S  *  K  L  V  M  F  H  P  P  K  R  C  I  C  C  W  R  C  P  D  V  I  I  N  D  W  I  H  F  L  L  L  D  T  L  E  G  *  Y  R  W  M  A  K  T  P  K  R  R  T  W  N  G  S  I  *  L  Y  R  I  Y  *  K  K  R  L  N  P  C  F  F  *  K  V  R  C  I  Y  N  S  N  K  M  F  R  *  G  T  Q  T  *  R  V  L  V  L  G  L  V  F  Y  H  P  *  L  H  T  *  Y  I  I  Y  E  R  S  S  *  E  F  K  *  I  R  I  K  H  Q  F  A  S  T  S  C  L  *  *  L  L  *  G  G  Y  C  R  L  *  S  L  *  F  S  W  *  *  T  *  K  R  V  Q  F  S  A  V  Y  F  V  I  L  C  K  *  T  N  Y  E  M  K  R  M  V  S </second_frame>
            <third_frame>   S  N  K  S  K  V  K  A  S  H  L  Q  K  N  K  Y  S  E  F  E  K  L  V  F  A  V  W  S  V  M  A  V  S  I  P  V  L  V  I  V  I  A  L  H  L  I  A  F  V  L  A  V  G  A  E  R  R  R  S  T  :  A  K  V  V  P  D  E  Y  D  E  R  A  Y  C  V  Y  G  T  D  A  S  T  A  Y  G  L  A  A  F  G  L  L  L  I  S  Q  T  L  V  N  G  I  T  K  C  L  C  F  G  R  G  M  M  G  G  S  S  T  T  C  A  I  F  F  F  V  F  S  W :   V  S  F  L  G  A  E  A  C  L  L  A  G  S  A  K  N  A  Y  H  T  K  Y  R  A  V  F  Q  V  E  N  L  S  C  S  T  L  R  K  G  V  F  A  A  G  A  A  L  T  L  L  S  M  I  G  S  I  F  Y  Y  W  I  H  S  K  A  D  T  G  G  W  Q  K  H  Q  N  E  G  L  G  M  A  A  S  N  Y  T  E  S  T  E  R  K  G  *  I  R  V  S  S  K  R  S  V  A  F  T  I  R  T  R  C  F  D  E  E  L  K  H  E  E  F  *  F  L  V  W  F  S  T  I  H  S  Y  I  H  N  I  L  Y  M  N  V  A  R  R  N  L  S  K  F  V  L  S  T  N  S  R  P  H  R  V  C  N  S  F  C  E  E  V  I  V  D  Y  D  L  Y  D  F  L  G  S  E  L  E  K  G  Y  N  F  L  Q  F  I  L  *  F  Y  V  S  E  Q  T  M  K  *  K  E  W  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44552" stop="44373"/>
                    <exon start="43241" stop="43036"/>
                    <exon start="40604" stop="40319"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNKSKVKASHLQKNKYSEFEKLVFAVWSVMAVSIPVLVIVIALHLIAFVLAVGAERRRSTAKVVPDEYDERAYCVYGTDASTAYGLAAFGLLLISQTLVNGITKCLCFGRGMMGGSSTTCAIFFFVFSWVSFLGAEACLLAGSAKNAYHTKYRAVFQVENLSCSTLRKGVFAAGAALTLLSMIGSIFYYWIHSKADTGGWQKHQNEGLGMAASNYTESTERKG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40234" stop="40016"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLVWFSTIHSYIHNILYMNVARRNLSKFVLSTNSRPHRVCNSFCEEVIVDYDLYDFLGSELEKGYNFLQFIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44553" e_stop="44373"/>
            <exon e_start="43241" e_stop="43036"/>
            <exon e_start="40890" e_stop="40246"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44553" e_stop="44373" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44372" i_stop="43242" i_length="1131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43241" e_stop="43036" e_length="206"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43035" i_stop="40891" i_length="2145"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="40890" e_stop="40246" e_length="645"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44553" stop="44373"/>
              <exon start="43241" stop="43036"/>
              <exon start="40890" stop="40702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40816" stop="40246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGAATAAAAGTAAAGTAAAAGCTTCCCACTTACAAAAAAATAAGTATAGTGAATTTGAGAAGTTGGTTTTTGCAGTGTGGTCAGTAATGGCGGTTTCTATTCCTGTTCTTGTGATTGTTATTGCACTTCATCTCATTGCTTTTGTTCTTGCTGTCGGTGCTGAACGACGTCGTAGCACG : GCGAAAGTTGTACCGGATGAGTATGATGAACGGGCGTACTGTGTATATGGAACGGATGCTTCTACAGCCTATGGATTGGCGGCATTTGGTTTACTTCTGATTAGCCAAACGTTGGTTAACGGCATTACCAAGTGCTTGTGTTTTGGAAGAGGAATGATGGGTGGCAGTTCTACTACTTGTGCCATTTTCTTTTTTGTCTTCTCCTG : ATATTTGAAGATTATACAGAAACTACTCCGGGAATCTACGGCCAAGTGCTAGCGCAAGGGATAGGGGAGTGAAAATACTTGCAAAATTCTCAGAGATACTTCCATTACTTTATACACATCTCTTCTCTATCACATTCTTTTTACCTTTTGGCTCCATAGTCTAAGGTCGTTGTCACGATAATTACTTTTTCAGTTCTTAACCTCCCTGTCTGAAGCAGCCATGGAAACTGATGGTAGTAGAACAACATATATCTATTGCTTACTTCCTCTTTTGAATGACAAACAGGGTTAGTTTTTTAGGAGCAGAAGCATGCTTATTGGCAGGATCAGCAAAGAATGCATACCATACAAAGTATCGCGCGGTTTTCCAAGTTGAAAACTTGTCATGTTCCACCCTCCGAAAAGGTGTATTTGCTGCTGGCGCTGCCCTGACGTTATTATCAATGATTGGATCCATTTTCTACTACTGGATACACTCGAAGGCTGATACCGGTGGATGGCAAAAACACCAAAACGAAGGACTTGGAATGGCAGCATCTAACTATACCGAATCTACTGAAAGAAAAGGCTGAATCCGTGTTTCTTCTAAAAGGTCCGTTGCATTTACAATTCGAACAAGATGTTTCGATGAGGAACTCAAACATG</gDNA_template>
            <first_frame> F  E  *  K  *  S  K  S  F  P  L  T  K  K  *  V  *  *  I  *  E  V  G  F  C  S  V  V  S  N  G  G  F  Y  S  C  S  C  D  C  Y  C  T  S  S  H  C  F  C  S  C  C  R  C  *  T  T  S  *  H   : G  E  S  C  T  G  *  V  *  *  T  G  V  L  C  I  W  N  G  C  F  Y  S  L  W  I  G  G  I  W  F  T  S  D  *  P  N  V  G  *  R  H  Y  Q  V  L  V  F  W  K  R  N  D  G  W  Q  F  Y  Y  L  C  H  F  L  F  C  L  L  L  :  I  F  E  D  Y  T  E  T  T  P  G  I  Y  G  Q  V  L  A  Q  G  I  G  E  *  K  Y  L  Q  N  S  Q  R  Y  F  H  Y  F  I  H  I  S  S  L  S  H  S  F  Y  L  L  A  P  *  S  K  V  V  V  T  I  I  T  F  S  V  L  N  L  P  V  *  S  S  H  G  N  *  W  *  *  N  N  I  Y  L  L  L  T  S  S  F  E  *  Q  T  G  L  V  F  *  E  Q  K  H  A  Y  W  Q  D  Q  Q  R  M  H  T  I  Q  S  I  A  R  F  S  K  L  K  T  C  H  V  P  P  S  E  K  V  Y  L  L  L  A  L  P  *  R  Y  Y  Q  *  L  D  P  F  S  T  T  G  Y  T  R  R  L  I  P  V  D  G  K  N  T  K  T  K  D  L  E  W  Q  H  L  T  I  P  N  L  L  K  E  K  A  E  S  V  F  L  L  K  G  P  L  H  L  Q  F  E  Q  D  V  S  M  R  N  S  N  M </first_frame>
            <second_frame>  S  N  K  S  K  V  K  A  S  H  L  Q  K  N  K  Y  S  E  F  E  K  L  V  F  A  V  W  S  V  M  A  V  S  I  P  V  L  V  I  V  I  A  L  H  L  I  A  F  V  L  A  V  G  A  E  R  R  R  S  T  :  A  K  V  V  P  D  E  Y  D  E  R  A  Y  C  V  Y  G  T  D  A  S  T  A  Y  G  L  A  A  F  G  L  L  L  I  S  Q  T  L  V  N  G  I  T  K  C  L  C  F  G  R  G  M  M  G  G  S  S  T  T  C  A  I  F  F  F  V  F  S  * :   Y  L  K  I  I  Q  K  L  L  R  E  S  T  A  K  C  *  R  K  G  *  G  S  E  N  T  C  K  I  L  R  D  T  S  I  T  L  Y  T  S  L  L  Y  H  I  L  F  T  F  W  L  H  S  L  R  S  L  S  R  *  L  L  F  Q  F  L  T  S  L  S  E  A  A  M  E  T  D  G  S  R  T  T  Y  I  Y  C  L  L  P  L  L  N  D  K  Q  G  *  F  F  R  S  R  S  M  L  I  G  R  I  S  K  E  C  I  P  Y  K  V  S  R  G  F  P  S  *  K  L  V  M  F  H  P  P  K  R  C  I  C  C  W  R  C  P  D  V  I  I  N  D  W  I  H  F  L  L  L  D  T  L  E  G  *  Y  R  W  M  A  K  T  P  K  R  R  T  W  N  G  S  I  *  L  Y  R  I  Y  *  K  K  R  L  N  P  C  F  F  *  K  V  R  C  I  Y  N  S  N  K  M  F  R  *  G  T  Q  T   </second_frame>
            <third_frame>   R  I  K  V  K  *  K  L  P  T  Y  K  K  I  S  I  V  N  L  R  S  W  F  L  Q  C  G  Q  *  W  R  F  L  F  L  F  L  *  L  L  L  H  F  I  S  L  L  L  F  L  L  S  V  L  N  D  V  V  A  R :   R  K  L  Y  R  M  S  M  M  N  G  R  T  V  Y  M  E  R  M  L  L  Q  P  M  D  W  R  H  L  V  Y  F  *  L  A  K  R  W  L  T  A  L  P  S  A  C  V  L  E  E  E  *  W  V  A  V  L  L  L  V  P  F  S  F  L  S  S  P   : D  I  *  R  L  Y  R  N  Y  S  G  N  L  R  P  S  A  S  A  R  D  R  G  V  K  I  L  A  K  F  S  E  I  L  P  L  L  Y  T  H  L  F  S  I  T  F  F  L  P  F  G  S  I  V  *  G  R  C  H  D  N  Y  F  F  S  S  *  P  P  C  L  K  Q  P  W  K  L  M  V  V  E  Q  H  I  S  I  A  Y  F  L  F  *  M  T  N  R  V  S  F  L  G  A  E  A  C  L  L  A  G  S  A  K  N  A  Y  H  T  K  Y  R  A  V  F  Q  V  E  N  L  S  C  S  T  L  R  K  G  V  F  A  A  G  A  A  L  T  L  L  S  M  I  G  S  I  F  Y  Y  W  I  H  S  K  A  D  T  G  G  W  Q  K  H  Q  N  E  G  L  G  M  A  A  S  N  Y  T  E  S  T  E  R  K  G  *  I  R  V  S  S  K  R  S  V  A  F  T  I  R  T  R  C  F  D  E  E  L  K  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44552" stop="44373"/>
                    <exon start="43241" stop="40890"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNKSKVKASHLQKNKYSEFEKLVFAVWSVMAVSIPVLVIVIALHLIAFVLAVGAERRRSTAKVVPDEYDERAYCVYGTDASTAYGLAAFGLLLISQTLVNGITKCLCFGRGMMGGSSTTCAIFFFVFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40615" stop="40319"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTNRVSFLGAEACLLAGSAKNAYHTKYRAVFQVENLSCSTLRKGVFAAGAALTLLSMIGSIFYYWIHSKADTGGWQKHQNEGLGMAASNYTESTERKG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="49376" PGL_stop="50653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49376" e_stop="49401"/>
            <exon e_start="49764" e_stop="50653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49376" e_stop="49401" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.945">
            <gDNA_intron_boundary i_start="49402" i_stop="49763" i_length="362"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="49764" e_stop="50653" e_length="890"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49376" stop="49401"/>
              <exon start="49764" stop="50290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49931" stop="50653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGAACAAATTTGTTGATTTCGTTG : GTGAATATCACTTAGATCTTATCGTGAGTTATGGCGCCGTGCCTGTTATAGCTCCGCGGGTAAGTGGTGTACACATGTTACTAGAAAGTTTTCAACCAATTCATGGAGTTCTTTTATGTGAAGGTGAAGACATTGATCCATCACTTTATGATAGTGATGAATTGTCACAAGAAGAAGTTGAAGAAATAAAAAAATTACATTCAAGTGATACAACAATTGATAGAGAAAAAGATTCAATTGAATTAGCACTTGCAAAACTATGTCTTGAGAGAAATATACCTTATTTGGGAATTTGTAGAGGTTCACAAGTCCTTAATGTTGCTTGTGGTGGCACCCTTTATCAAGATTTGGAGAAAGAATTGTCTAAGCGTTATCAAATGTTATCTCGTTCAGACACTCCAGAGATGTCGTCGTTGATGTTGCACCCTTGTCTTATTGGAGAATCAGACATGAACCCGTCGGGGTTATTGGAGTGTTTAAACACCATAGAGAAAGAATTGTCTAAAGATTCAAACTCTTCAGAAATGTCAACAATATTGAAGTCATGTCCGAGTGATACAGAGAAAGAATCGTCTGAAAATTACAAAGACCTATTCTGTTCAGACTCTTCAGAAATGTCAGACATGCAACCATCGACAATATTGAAGTCATGTCCGAGTGACATAGAGAGAGAATTGCCCAACAACTGCTCTTTAGAAATGTTGTCACGTTCGTCATCGTTGAAGAGTGAAAGTCAGAGTCAGAGTCGGAGCGATATAGGCAAAAAGTATGAAAAAGTTGTACATATGAACTATGAAAACTATGATGGACATAGACATGTGGTGAAAATAGTTGAAAATACACCATTACACAAATGGTTTAAAGAGTCATTAGAAGATAATAATGATGAT</gDNA_template>
            <first_frame> *  E  Q  I  C  *  F  R  W :   *  I  S  L  R  S  Y  R  E  L  W  R  R  A  C  Y  S  S  A  G  K  W  C  T  H  V  T  R  K  F  S  T  N  S  W  S  S  F  M  *  R  *  R  H  *  S  I  T  L  *  *  *  *  I  V  T  R  R  S  *  R  N  K  K  I  T  F  K  *  Y  N  N  *  *  R  K  R  F  N  *  I  S  T  C  K  T  M  S  *  E  K  Y  T  L  F  G  N  L  *  R  F  T  S  P  *  C  C  L  W  W  H  P  L  S  R  F  G  E  R  I  V  *  A  L  S  N  V  I  S  F  R  H  S  R  D  V  V  V  D  V  A  P  L  S  Y  W  R  I  R  H  E  P  V  G  V  I  G  V  F  K  H  H  R  E  R  I  V  *  R  F  K  L  F  R  N  V  N  N  I  E  V  M  S  E  *  Y  R  E  R  I  V  *  K  L  Q  R  P  I  L  F  R  L  F  R  N  V  R  H  A  T  I  D  N  I  E  V  M  S  E  *  H  R  E  R  I  A  Q  Q  L  L  F  R  N  V  V  T  F  V  I  V  E  E  *  K  S  E  S  E  S  E  R  Y  R  Q  K  V  *  K  S  C  T  Y  E  L  *  K  L  *  W  T  *  T  C  G  E  N  S  *  K  Y  T  I  T  Q  M  V  *  R  V  I  R  R  *  *  *  *  </first_frame>
            <second_frame>  K  N  K  F  V  D  F  V   : G  E  Y  H  L  D  L  I  V  S  Y  G  A  V  P  V  I  A  P  R  V  S  G  V  H  M  L  L  E  S  F  Q  P  I  H  G  V  L  L  C  E  G  E  D  I  D  P  S  L  Y  D  S  D  E  L  S  Q  E  E  V  E  E  I  K  K  L  H  S  S  D  T  T  I  D  R  E  K  D  S  I  E  L  A  L  A  K  L  C  L  E  R  N  I  P  Y  L  G  I  C  R  G  S  Q  V  L  N  V  A  C  G  G  T  L  Y  Q  D  L  E  K  E  L  S  K  R  Y  Q  M  L  S  R  S  D  T  P  E  M  S  S  L  M  L  H  P  C  L  I  G  E  S  D  M  N  P  S  G  L  L  E  C  L  N  T  I  E  K  E  L  S  K  D  S  N  S  S  E  M  S  T  I  L  K  S  C  P  S  D  T  E  K  E  S  S  E  N  Y  K  D  L  F  C  S  D  S  S  E  M  S  D  M  Q  P  S  T  I  L  K  S  C  P  S  D  I  E  R  E  L  P  N  N  C  S  L  E  M  L  S  R  S  S  S  L  K  S  E  S  Q  S  Q  S  R  S  D  I  G  K  K  Y  E  K  V  V  H  M  N  Y  E  N  Y  D  G  H  R  H  V  V  K  I  V  E  N  T  P  L  H  K  W  F  K  E  S  L  E  D  N  N  D  D </second_frame>
            <third_frame>   R  T  N  L  L  I  S  L  :  V  N  I  T  *  I  L  S  *  V  M  A  P  C  L  L  *  L  R  G  *  V  V  Y  T  C  Y  *  K  V  F  N  Q  F  M  E  F  F  Y  V  K  V  K  T  L  I  H  H  F  M  I  V  M  N  C  H  K  K  K  L  K  K  *  K  N  Y  I  Q  V  I  Q  Q  L  I  E  K  K  I  Q  L  N  *  H  L  Q  N  Y  V  L  R  E  I  Y  L  I  W  E  F  V  E  V  H  K  S  L  M  L  L  V  V  A  P  F  I  K  I  W  R  K  N  C  L  S  V  I  K  C  Y  L  V  Q  T  L  Q  R  C  R  R  *  C  C  T  L  V  L  L  E  N  Q  T  *  T  R  R  G  Y  W  S  V  *  T  P  *  R  K  N  C  L  K  I  Q  T  L  Q  K  C  Q  Q  Y  *  S  H  V  R  V  I  Q  R  K  N  R  L  K  I  T  K  T  Y  S  V  Q  T  L  Q  K  C  Q  T  C  N  H  R  Q  Y  *  S  H  V  R  V  T  *  R  E  N  C  P  T  T  A  L  *  K  C  C  H  V  R  H  R  *  R  V  K  V  R  V  R  V  G  A  I  *  A  K  S  M  K  K  L  Y  I  *  T  M  K  T  M  M  D  I  D  M  W  *  K  *  L  K  I  H  H  Y  T  N  G  L  K  S  H  *  K  I  I  M  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49377" stop="49401"/>
                    <exon start="49764" stop="50653"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKFVDFVGEYHLDLIVSYGAVPVIAPRVSGVHMLLESFQPIHGVLLCEGEDIDPSLYDSDELSQEEVEEIKKLHSSDTTIDREKDSIELALAKLCLERNIPYLGICRGSQVLNVACGGTLYQDLEKELSKRYQMLSRSDTPEMSSLMLHPCLIGESDMNPSGLLECLNTIEKELSKDSNSSEMSTILKSCPSDTEKESSENYKDLFCSDSSEMSDMQPSTILKSCPSDIERELPNNCSLEMLSRSSSLKSESQSQSRSDIGKKYEKVVHMNYENYDGHRHVVKIVENTPLHKWFKESLEDNNDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="53659" PGL_stop="53299"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53659" e_stop="53299"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53659" e_stop="53299" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53659" stop="53299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53659" stop="53299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53658" stop="53299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATATTGATGGGAAAGGAGTGGAAGTTAGTAACGAAGTAACAGAAGTTCGAGGGAAGTTACAAATAAAAGATCTGTAAAACAGATGAGCTGATGAGTAACAATGCTTATGCAGGTGATCGAACGACTGAAAGAAAAAACTAAAAGTATAGTATTAAGATAGCACCATAATGCTCCTCATTTTCTGCTTTCATAGTAGAGAGAGCTGGCTGTTTTTACTGCCTTGAATTTGTTGGTGTGTTAATTTATACTAGCAATATTTTGATAGAGCTACTATATATGGTGGTGAAATGTAGCTTCCCCATGTCATGTACATTACTTTTTTATTTGACTTTATTTAGTAATAATAGACTTATTTAGGT</gDNA_template>
            <first_frame> E  Y  *  W  E  R  S  G  S  *  *  R  S  N  R  S  S  R  E  V  T  N  K  R  S  V  K  Q  M  S  *  *  V  T  M  L  M  Q  V  I  E  R  L  K  E  K  T  K  S  I  V  L  R  *  H  H  N  A  P  H  F  L  L  S  *  *  R  E  L  A  V  F  T  A  L  N  L  L  V  C  *  F  I  L  A  I  F  *  *  S  Y  Y  I  W  W  *  N  V  A  S  P  C  H  V  H  Y  F  F  I  *  L  Y  L  V  I  I  D  L  F  R  </first_frame>
            <second_frame>  N  I  D  G  K  G  V  E  V  S  N  E  V  T  E  V  R  G  K  L  Q  I  K  D  L  *  N  R  *  A  D  E  *  Q  C  L  C  R  *  S  N  D  *  K  K  K  L  K  V  *  Y  *  D  S  T  I  M  L  L  I  F  C  F  H  S  R  E  S  W  L  F  L  L  P  *  I  C  W  C  V  N  L  Y  *  Q  Y  F  D  R  A  T  I  Y  G  G  E  M  *  L  P  H  V  M  Y  I  T  F  L  F  D  F  I  *  *  *  *  T  Y  L  G </second_frame>
            <third_frame>   I  L  M  G  K  E  W  K  L  V  T  K  *  Q  K  F  E  G  S  Y  K  *  K  I  C  K  T  D  E  L  M  S  N  N  A  Y  A  G  D  R  T  T  E  R  K  N  *  K  Y  S  I  K  I  A  P  *  C  S  S  F  S  A  F  I  V  E  R  A  G  C  F  Y  C  L  E  F  V  G  V  L  I  Y  T  S  N  I  L  I  E  L  L  Y  M  V  V  K  C  S  F  P  M  S  C  T  L  L  F  Y  L  T  L  F  S  N  N  R  L  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0028N03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="55704" PGL_stop="53686"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55704" e_stop="55656"/>
            <exon e_start="55491" e_stop="55406"/>
            <exon e_start="55319" e_stop="55228"/>
            <exon e_start="54117" e_stop="53686"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="0.918"/>
          <exon-intron don_prob="0.624" acc_prob="1.000" e_score="0.930"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="55704" e_stop="55656" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55655" i_stop="55492" i_length="164"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="55491" e_stop="55406" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.624" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55405" i_stop="55320" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55319" e_stop="55228" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55227" i_stop="54118" i_length="1110"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="54117" e_stop="53686" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="55656"/>
              <exon start="55491" stop="55406"/>
              <exon start="55319" stop="55228"/>
              <exon start="54117" stop="53686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419518" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55410" stop="55406"/>
              <exon start="55319" stop="55228"/>
              <exon start="54117" stop="53715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55283" stop="55228"/>
              <exon start="54117" stop="53715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54069" stop="53715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54066" stop="53715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATTTTGCGCATGATCAGCCCTATGGTCGTGAACCTTTGGCAGACAAG : ATATCTGATCTTGCTCAACGTTTCCCGGAATTAAAAACAATGAGAAGTTGTGATCTCCTTCCTTCCAGTTGGATATCTGTAGCCTG : GTATCCAATTTACCGGATACCTACGGGACCTACTTTAAAAGCTCTGGATGCTTGTTTTCTGACATTTCATTCTCTTCATACACCCATGCCAG : GAAATCAAAGTGGTCATACCGCTGTTGTTGCATGTCCAACTGATACGGATGCTGCCCCTAAGATTCCACTACCTGCTTTTGGCCTTGCTTCATACAAGTTTAAAGCGTCACTTTGGACTCCAAATGGCGGATCTGGAAGACAGTTAATGAGCTCGCTCTTACAAGCTGCTGATAACTGGCTAACACTTCTTCAGGTCAATCATCCTGATTTCAGTTTCTTCTGCCAGAGGTGAAAACGATATACTCTCCTCTGTTTGTGGCGAGAAAACCACTCTCTGGTTGATACAGCTGTTGATTTTCCAAGGAAAAATGGGTTAAGACTTGAAGATTCGCTCTAACCTTTAGTTACAATGCTGTTATCTATACTAAGAGACAAAACAAAATTCAAAAAAAAAAAAAAAACGAAAAAAAAAAAAAACAGAAACCGTAAAT</gDNA_template>
            <first_frame> V  F  C  A  *  S  A  L  W  S  *  T  F  G  R  Q   : D  I  *  S  C  S  T  F  P  G  I  K  N  N  E  K  L  *  S  P  S  F  Q  L  D  I  C  S  L  :  V  S  N  L  P  D  T  Y  G  T  Y  F  K  S  S  G  C  L  F  S  D  I  S  F  S  S  Y  T  H  A  R :   K  S  K  W  S  Y  R  C  C  C  M  S  N  *  Y  G  C  C  P  *  D  S  T  T  C  F  W  P  C  F  I  Q  V  *  S  V  T  L  D  S  K  W  R  I  W  K  T  V  N  E  L  A  L  T  S  C  *  *  L  A  N  T  S  S  G  Q  S  S  *  F  Q  F  L  L  P  E  V  K  T  I  Y  S  P  L  F  V  A  R  K  P  L  S  G  *  Y  S  C  *  F  S  K  E  K  W  V  K  T  *  R  F  A  L  T  F  S  Y  N  A  V  I  Y  T  K  R  Q  N  K  I  Q  K  K  K  K  N  E  K  K  K  K  Q  K  P  *   </first_frame>
            <second_frame>  Y  F  A  H  D  Q  P  Y  G  R  E  P  L  A  D  K  :  I  S  D  L  A  Q  R  F  P  E  L  K  T  M  R  S  C  D  L  L  P  S  S  W  I  S  V  A  W :   Y  P  I  Y  R  I  P  T  G  P  T  L  K  A  L  D  A  C  F  L  T  F  H  S  L  H  T  P  M  P   : G  N  Q  S  G  H  T  A  V  V  A  C  P  T  D  T  D  A  A  P  K  I  P  L  P  A  F  G  L  A  S  Y  K  F  K  A  S  L  W  T  P  N  G  G  S  G  R  Q  L  M  S  S  L  L  Q  A  A  D  N  W  L  T  L  L  Q  V  N  H  P  D  F  S  F  F  C  Q  R  *  K  R  Y  T  L  L  C  L  W  R  E  N  H  S  L  V  D  T  A  V  D  F  P  R  K  N  G  L  R  L  E  D  S  L  *  P  L  V  T  M  L  L  S  I  L  R  D  K  T  K  F  K  K  K  K  K  T  K  K  K  K  N  R  N  R  K  </second_frame>
            <third_frame>   I  L  R  M  I  S  P  M  V  V  N  L  W  Q  T  R :   Y  L  I  L  L  N  V  S  R  N  *  K  Q  *  E  V  V  I  S  F  L  P  V  G  Y  L  *  P   : G  I  Q  F  T  G  Y  L  R  D  L  L  *  K  L  W  M  L  V  F  *  H  F  I  L  F  I  H  P  C  Q  :  E  I  K  V  V  I  P  L  L  L  H  V  Q  L  I  R  M  L  P  L  R  F  H  Y  L  L  L  A  L  L  H  T  S  L  K  R  H  F  G  L  Q  M  A  D  L  E  D  S  *  *  A  R  S  Y  K  L  L  I  T  G  *  H  F  F  R  S  I  I  L  I  S  V  S  S  A  R  G  E  N  D  I  L  S  S  V  C  G  E  K  T  T  L  W  L  I  Q  L  L  I  F  Q  G  K  M  G  *  D  L  K  I  R  S  N  L  *  L  Q  C  C  Y  L  Y  *  E  T  K  Q  N  S  K  K  K  K  K  R  K  K  K  K  T  E  T  V  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55703" stop="55656"/>
                    <exon start="55491" stop="55406"/>
                    <exon start="55319" stop="55228"/>
                    <exon start="54117" stop="53885"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFAHDQPYGREPLADKISDLAQRFPELKTMRSCDLLPSSWISVAWYPIYRIPTGPTLKALDACFLTFHSLHTPMPGNQSGHTAVVACPTDTDAAPKIPLPAFGLASYKFKASLWTPNGGSGRQLMSSLLQAADNWLTLLQVNHPDFSFFCQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="53716" PGL_stop="54021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53716" e_stop="54021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="53716" e_stop="54021" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53716" stop="54021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTTTTTTTTTGAATTTTGTTTTGTCTCTTAGTATAGATAACAGCATTGTAACTAAAGGTTAGAGCGAATCTTCAAGTCTTAACCCATTTTTCCTTGGAAAATCAACAGCTGTATCAACCAGAGAGTGGTTTTCTCGCCACAAACAGAGGAGAGTATATCGTTTTCACCTCTGGCAGAAGAAACTGAAATCAGGATGATTGACCTGAAGAAGTGTTAGCCAGTTATCAGCAGCTTGTAAGAGCGAGCTCATTAACTGTCTTCCAGATCCGCCATTTGGAGTCCAAAGTGACGCTTTAAACT</gDNA_template>
            <first_frame> F  F  F  F  F  *  I  L  F  C  L  L  V  *  I  T  A  L  *  L  K  V  R  A  N  L  Q  V  L  T  H  F  S  L  E  N  Q  Q  L  Y  Q  P  E  S  G  F  L  A  T  N  R  G  E  Y  I  V  F  T  S  G  R  R  N  *  N  Q  D  D  *  P  E  E  V  L  A  S  Y  Q  Q  L  V  R  A  S  S  L  T  V  F  Q  I  R  H  L  E  S  K  V  T  L  *  T </first_frame>
            <second_frame>  F  F  F  F  F  E  F  C  F  V  S  *  Y  R  *  Q  H  C  N  *  R  L  E  R  I  F  K  S  *  P  I  F  P  W  K  I  N  S  C  I  N  Q  R  V  V  F  S  P  Q  T  E  E  S  I  S  F  S  P  L  A  E  E  T  E  I  R  M  I  D  L  K  K  C  *  P  V  I  S  S  L  *  E  R  A  H  *  L  S  S  R  S  A  I  W  S  P  K  *  R  F  K   </second_frame>
            <third_frame>   F  F  F  F  L  N  F  V  L  S  L  S  I  D  N  S  I  V  T  K  G  *  S  E  S  S  S  L  N  P  F  F  L  G  K  S  T  A  V  S  T  R  E  W  F  S  R  H  K  Q  R  R  V  Y  R  F  H  L  W  Q  K  K  L  K  S  G  *  L  T  *  R  S  V  S  Q  L  S  A  A  C  K  S  E  L  I  N  C  L  P  D  P  P  F  G  V  Q  S  D  A  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0028N03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="60163" PGL_stop="55779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60163" e_stop="59449"/>
            <exon e_start="58759" e_stop="58548"/>
            <exon e_start="55950" e_stop="55779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.889" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60163" e_stop="59449" e_length="715"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.995">
            <gDNA_intron_boundary i_start="59448" i_stop="58760" i_length="689"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58759" e_stop="58548" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.889">
            <gDNA_intron_boundary i_start="58547" i_stop="55951" i_length="2597"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55950" e_stop="55779" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60163" stop="59449"/>
              <exon start="58759" stop="58684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60030" stop="59486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59495" stop="59449"/>
              <exon start="58759" stop="58548"/>
              <exon start="55950" stop="55779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATTCTGTCACTCTGCTTTTCTCTCTCTCTCTCTCTCCATTTTCAACTGCAAATTTTCAATTTGAATCCAAAAAAAATTCTCTTTTTATACAAATCCACATGCTCTTTGATTAATATATTTGTTAGTAATATTTTGATCTGAGTCAATATTTGCTAGGGTTTATATAAATTCTCCATAAACTTCAATTTATCGAATTTTTACCATTTCTTTTTGTGTGGCTAATTTTTACTCGTTTGATTCATTTCTGCGAGAATCAATTAGCCTAATCAGCCCCTTTTCGTTTTCTTGAAGAATTTCTGAGAAAATCGATATATAAAGTGCAATTTATCGATATATATTTGGGAAAAAAGGGATTTTTTTTTGGATATAGATAGAGATTTTAGGGGTTTTTAATATAAAGAGATGATGGGTAGTGGATTACAGTTTAATCGGAGTTTTAACGGTGAAGATCGGTTTTATAGTGCTGCGAAGGCTCGCCGGAATGTTAATCGGAGTTTTAATGGTGAGGATAATTTAAGGAGAGCTAAGAGTGATGTTGCTGTTAGTAATTTTCCGACGAAGACTAAAATGAAGGTGGCTGCCGTCGATGAATCAACGAAGGAGTTACCGGTTGCTGCTGCCGTGCCGGCATCGGAAGTTTTGCCGCTTTGTAATCTACAGCGGTTTTTGAAATCTGTTACTCCTTCAGTTCCTGCTCAATATCTATCAAAG : ACAACTATTAGGGGTTGGAGGACGTGTGATGTGGAGTTTCTGCCTTACTATGTACTTGGCGACTTATGGGAGTCTTTTAAAGAATGGAGTGCTTATGGAGCTGGAGTTCCATTGGTTTTGGATGAAGGTGATAGTGCAGTTCAGTACTATGTGCCCTATTTGTCAGGTATTCAGTTGTATGGCGACTCTTCAAAGGCTTCAGTCAAAACAAG : GCGACCAGGTGAGGAGAGTGATAGTGACTATTTTCGGGATTCCAGTAGTGATGGAAGTAGTGACTCTGAACACGAGAGACGTTGCTTGAATTATTCAAGGGAGCAACGGATGTATCATAGCCAAGCAAGTGAAAGCTCTCTTAGTATCGATGGGTTATCATTAAGAGACAGT</gDNA_template>
            <first_frame> F  Y  S  V  T  L  L  F  S  L  S  L  S  P  F  S  T  A  N  F  Q  F  E  S  K  K  N  S  L  F  I  Q  I  H  M  L  F  D  *  Y  I  C  *  *  Y  F  D  L  S  Q  Y  L  L  G  F  I  *  I  L  H  K  L  Q  F  I  E  F  L  P  F  L  F  V  W  L  I  F  T  R  L  I  H  F  C  E  N  Q  L  A  *  S  A  P  F  R  F  L  E  E  F  L  R  K  S  I  Y  K  V  Q  F  I  D  I  Y  L  G  K  K  G  F  F  F  G  Y  R  *  R  F  *  G  F  L  I  *  R  D  D  G  *  W  I  T  V  *  S  E  F  *  R  *  R  S  V  L  *  C  C  E  G  S  P  E  C  *  S  E  F  *  W  *  G  *  F  K  E  S  *  E  *  C  C  C  *  *  F  S  D  E  D  *  N  E  G  G  C  R  R  *  I  N  E  G  V  T  G  C  C  C  R  A  G  I  G  S  F  A  A  L  *  S  T  A  V  F  E  I  C  Y  S  F  S  S  C  S  I  S  I  K   : D  N  Y  *  G  L  E  D  V  *  C  G  V  S  A  L  L  C  T  W  R  L  M  G  V  F  *  R  M  E  C  L  W  S  W  S  S  I  G  F  G  *  R  *  *  C  S  S  V  L  C  A  L  F  V  R  Y  S  V  V  W  R  L  F  K  G  F  S  Q  N  K  :  A  T  R  *  G  E  *  *  *  L  F  S  G  F  Q  *  *  W  K  *  *  L  *  T  R  E  T  L  L  E  L  F  K  G  A  T  D  V  S  *  P  S  K  *  K  L  S  *  Y  R  W  V  I  I  K  R  Q  </first_frame>
            <second_frame>  F  I  L  S  L  C  F  S  L  S  L  S  L  H  F  Q  L  Q  I  F  N  L  N  P  K  K  I  L  F  L  Y  K  S  T  C  S  L  I  N  I  F  V  S  N  I  L  I  *  V  N  I  C  *  G  L  Y  K  F  S  I  N  F  N  L  S  N  F  Y  H  F  F  L  C  G  *  F  L  L  V  *  F  I  S  A  R  I  N  *  P  N  Q  P  L  F  V  F  L  K  N  F  *  E  N  R  Y  I  K  C  N  L  S  I  Y  I  W  E  K  R  D  F  F  L  D  I  D  R  D  F  R  G  F  *  Y  K  E  M  M  G  S  G  L  Q  F  N  R  S  F  N  G  E  D  R  F  Y  S  A  A  K  A  R  R  N  V  N  R  S  F  N  G  E  D  N  L  R  R  A  K  S  D  V  A  V  S  N  F  P  T  K  T  K  M  K  V  A  A  V  D  E  S  T  K  E  L  P  V  A  A  A  V  P  A  S  E  V  L  P  L  C  N  L  Q  R  F  L  K  S  V  T  P  S  V  P  A  Q  Y  L  S  K  :  T  T  I  R  G  W  R  T  C  D  V  E  F  L  P  Y  Y  V  L  G  D  L  W  E  S  F  K  E  W  S  A  Y  G  A  G  V  P  L  V  L  D  E  G  D  S  A  V  Q  Y  Y  V  P  Y  L  S  G  I  Q  L  Y  G  D  S  S  K  A  S  V  K  T  R :   R  P  G  E  E  S  D  S  D  Y  F  R  D  S  S  S  D  G  S  S  D  S  E  H  E  R  R  C  L  N  Y  S  R  E  Q  R  M  Y  H  S  Q  A  S  E  S  S  L  S  I  D  G  L  S  L  R  D  S </second_frame>
            <third_frame>   L  F  C  H  S  A  F  L  S  L  S  L  S  I  F  N  C  K  F  S  I  *  I  Q  K  K  F  S  F  Y  T  N  P  H  A  L  *  L  I  Y  L  L  V  I  F  *  S  E  S  I  F  A  R  V  Y  I  N  S  P  *  T  S  I  Y  R  I  F  T  I  S  F  C  V  A  N  F  Y  S  F  D  S  F  L  R  E  S  I  S  L  I  S  P  F  S  F  S  *  R  I  S  E  K  I  D  I  *  S  A  I  Y  R  Y  I  F  G  K  K  G  I  F  F  W  I  *  I  E  I  L  G  V  F  N  I  K  R  *  W  V  V  D  Y  S  L  I  G  V  L  T  V  K  I  G  F  I  V  L  R  R  L  A  G  M  L  I  G  V  L  M  V  R  I  I  *  G  E  L  R  V  M  L  L  L  V  I  F  R  R  R  L  K  *  R  W  L  P  S  M  N  Q  R  R  S  Y  R  L  L  L  P  C  R  H  R  K  F  C  R  F  V  I  Y  S  G  F  *  N  L  L  L  L  Q  F  L  L  N  I  Y  Q  R :   Q  L  L  G  V  G  G  R  V  M  W  S  F  C  L  T  M  Y  L  A  T  Y  G  S  L  L  K  N  G  V  L  M  E  L  E  F  H  W  F  W  M  K  V  I  V  Q  F  S  T  M  C  P  I  C  Q  V  F  S  C  M  A  T  L  Q  R  L  Q  S  K  Q   : G  D  Q  V  R  R  V  I  V  T  I  F  G  I  P  V  V  M  E  V  V  T  L  N  T  R  D  V  A  *  I  I  Q  G  S  N  G  C  I  I  A  K  Q  V  K  A  L  L  V  S  M  G  Y  H  *  E  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59766" stop="59449"/>
                    <exon start="58759" stop="58548"/>
                    <exon start="55950" stop="55779"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKEMMGSGLQFNRSFNGEDRFYSAAKARRNVNRSFNGEDNLRRAKSDVAVSNFPTKTKMKVAAVDESTKELPVAAAVPASEVLPLCNLQRFLKSVTPSVPAQYLSKTTIRGWRTCDVEFLPYYVLGDLWESFKEWSAYGAGVPLVLDEGDSAVQYYVPYLSGIQLYGDSSKASVKTRRPGEESDSDYFRDSSSDGSSDSEHERRCLNYSREQRMYHSQASESSLSIDGLSLRDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="71153" PGL_stop="71811"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71153" e_stop="71811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="71153" e_stop="71811" e_length="659"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71153" stop="71796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71385" stop="71811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAATTGTACTATAATAATCCTCTGTGAATATGACTAATGACACTAAAAGCAGCCATTTTTATTGCAATTTGAAGCTTAATAATCATCAGTCAAAAAGTTTATTGGTCAATAAATGCAACTTTTTTTATTTTTTGGTTAAAAAATTATCTTGAAAATTCAATCTTTGTGTGATTGGAGGTAGATACATAGTCAACCCTTTTGTCAGAACCAGTTGTAGAGAATTTGTAAAGCAAAAAAATCCATATTTTTGCTTAAAAGTTCAATCTTTCTTCTAAAGGAAAAAACCCAAGAAACCCCTTTTCTCTTTTTAGTGTATTTTTCATTATCTACTTGTTTAGTTTGTATATTTTCAGGTGTTCTCAAGATTACAGATGAACCAAGAAAAAAGGTATTTCTTGATAGTATCATCAAACCTTTGTGTTTTATGCTTCATTTTGCAAATAGATAAATGTTCTGCTGTTGATCCACAGTTTGTAGTGTGTAATAAATCAGTAAATTGTAGATATGGTCCAAGAATAAGCTTTCCATTTTATATTGAAGATGTTCAAGAATCTTACTGTGGGTACCCTGGATTTGGGCTAAATTGTAGTGAACAAGGGTTTCCTGTTGTACATATTGCTGGAAATGAGTATGTAGTTGAAGATATTAGATATCAAG</gDNA_template>
            <first_frame> F  N  C  T  I  I  I  L  C  E  Y  D  *  *  H  *  K  Q  P  F  L  L  Q  F  E  A  *  *  S  S  V  K  K  F  I  G  Q  *  M  Q  L  F  L  F  F  G  *  K  I  I  L  K  I  Q  S  L  C  D  W  R  *  I  H  S  Q  P  F  C  Q  N  Q  L  *  R  I  C  K  A  K  K  S  I  F  L  L  K  S  S  I  F  L  L  K  E  K  T  Q  E  T  P  F  L  F  L  V  Y  F  S  L  S  T  C  L  V  C  I  F  S  G  V  L  K  I  T  D  E  P  R  K  K  V  F  L  D  S  I  I  K  P  L  C  F  M  L  H  F  A  N  R  *  M  F  C  C  *  S  T  V  C  S  V  *  *  I  S  K  L  *  I  W  S  K  N  K  L  S  I  L  Y  *  R  C  S  R  I  L  L  W  V  P  W  I  W  A  K  L  *  *  T  R  V  S  C  C  T  Y  C  W  K  *  V  C  S  *  R  Y  *  I  S   </first_frame>
            <second_frame>  L  I  V  L  *  *  S  S  V  N  M  T  N  D  T  K  S  S  H  F  Y  C  N  L  K  L  N  N  H  Q  S  K  S  L  L  V  N  K  C  N  F  F  Y  F  L  V  K  K  L  S  *  K  F  N  L  C  V  I  G  G  R  Y  I  V  N  P  F  V  R  T  S  C  R  E  F  V  K  Q  K  N  P  Y  F  C  L  K  V  Q  S  F  F  *  R  K  K  P  K  K  P  L  F  S  F  *  C  I  F  H  Y  L  L  V  *  F  V  Y  F  Q  V  F  S  R  L  Q  M  N  Q  E  K  R  Y  F  L  I  V  S  S  N  L  C  V  L  C  F  I  L  Q  I  D  K  C  S  A  V  D  P  Q  F  V  V  C  N  K  S  V  N  C  R  Y  G  P  R  I  S  F  P  F  Y  I  E  D  V  Q  E  S  Y  C  G  Y  P  G  F  G  L  N  C  S  E  Q  G  F  P  V  V  H  I  A  G  N  E  Y  V  V  E  D  I  R  Y  Q  </second_frame>
            <third_frame>   *  L  Y  Y  N  N  P  L  *  I  *  L  M  T  L  K  A  A  I  F  I  A  I  *  S  L  I  I  I  S  Q  K  V  Y  W  S  I  N  A  T  F  F  I  F  W  L  K  N  Y  L  E  N  S  I  F  V  *  L  E  V  D  T  *  S  T  L  L  S  E  P  V  V  E  N  L  *  S  K  K  I  H  I  F  A  *  K  F  N  L  S  S  K  G  K  N  P  R  N  P  F  S  L  F  S  V  F  F  I  I  Y  L  F  S  L  Y  I  F  R  C  S  Q  D  Y  R  *  T  K  K  K  G  I  S  *  *  Y  H  Q  T  F  V  F  Y  A  S  F  C  K  *  I  N  V  L  L  L  I  H  S  L  *  C  V  I  N  Q  *  I  V  D  M  V  Q  E  *  A  F  H  F  I  L  K  M  F  K  N  L  T  V  G  T  L  D  L  G  *  I  V  V  N  K  G  F  L  L  Y  I  L  L  E  M  S  M  *  L  K  I  L  D  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71493" stop="71810"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVYFQVFSRLQMNQEKRYFLIVSSNLCVLCFILQIDKCSAVDPQFVVCNKSVNCRYGPRISFPFYIEDVQESYCGYPGFGLNCSEQGFPVVHIAGNEYVVEDIRYQ</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71372" stop="71602"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RICKAKKSIFLLKSSIFLLKEKTQETPFLFLVYFSLSTCLVCIFSGVLKITDEPRKKVFLDSIIKPLCFMLHFANR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="75487" PGL_stop="76237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75487" e_stop="76237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="75487" e_stop="76237" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75487" stop="76237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339232" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATTGAAATTCTCTCTCGCCTACGGCATCGAAATCTTGTTACCCTTTATGGTTGCACATCAAAGCATAGCCGTGAACTCCTCCTTGTTTATGAATACATTCCCAATGGAACAGTGGCAGATCACCTGAATGGGGATAGAGCAAAGGACGGATTCCTCCCATGGCCTATCCGCATGAATATTGCTGTAGAAACTGCTTGTGCATTGGCTTACCTCCATGCTTCTGGCACAATACATCGCGATGTAAAGACTAGCAACATACTCCTCGACAGCAATTGTTGTGTCAAAGTTGCAGATTTTGGGCTTTCGAGACTTTTTCCAAATGATGCTACTCATGTCTCAACTGCTCCTCAAGGGACTGCTGGATATGTTGATCCAGAGTATCATGAATGTTACCAGCTCACTGATAAAAGTGATGTTTACAGTTTCGGTGTTGTCCTTGTTGAACTTATCTCATCAATGCCTGCTGTTGATATTACCAGGAGTCGACATGAAATCAATTTGGCCAACTTAGCAATAAACAGGATTCAGAGATGTGCATTTGATGAGCTGATTGATCCATCTCTGGGATTTAAATCAGATGCACAGGTTATGAGAATGACTACTTCAGTAGCAGAGCTAGCATTTCAATGCTTGCAGCTTGAAACAGACTTGAGACCAAAAATGGATGAAGTATTAGAGACACTTAAACATATACAAGGCACCTATACTGATCACATCAAAGATGAGAAGACGAATGACTCAATTGTCG</gDNA_template>
            <first_frame> E  I  E  I  L  S  R  L  R  H  R  N  L  V  T  L  Y  G  C  T  S  K  H  S  R  E  L  L  L  V  Y  E  Y  I  P  N  G  T  V  A  D  H  L  N  G  D  R  A  K  D  G  F  L  P  W  P  I  R  M  N  I  A  V  E  T  A  C  A  L  A  Y  L  H  A  S  G  T  I  H  R  D  V  K  T  S  N  I  L  L  D  S  N  C  C  V  K  V  A  D  F  G  L  S  R  L  F  P  N  D  A  T  H  V  S  T  A  P  Q  G  T  A  G  Y  V  D  P  E  Y  H  E  C  Y  Q  L  T  D  K  S  D  V  Y  S  F  G  V  V  L  V  E  L  I  S  S  M  P  A  V  D  I  T  R  S  R  H  E  I  N  L  A  N  L  A  I  N  R  I  Q  R  C  A  F  D  E  L  I  D  P  S  L  G  F  K  S  D  A  Q  V  M  R  M  T  T  S  V  A  E  L  A  F  Q  C  L  Q  L  E  T  D  L  R  P  K  M  D  E  V  L  E  T  L  K  H  I  Q  G  T  Y  T  D  H  I  K  D  E  K  T  N  D  S  I  V  </first_frame>
            <second_frame>  K  L  K  F  S  L  A  Y  G  I  E  I  L  L  P  F  M  V  A  H  Q  S  I  A  V  N  S  S  L  F  M  N  T  F  P  M  E  Q  W  Q  I  T  *  M  G  I  E  Q  R  T  D  S  S  H  G  L  S  A  *  I  L  L  *  K  L  L  V  H  W  L  T  S  M  L  L  A  Q  Y  I  A  M  *  R  L  A  T  Y  S  S  T  A  I  V  V  S  K  L  Q  I  L  G  F  R  D  F  F  Q  M  M  L  L  M  S  Q  L  L  L  K  G  L  L  D  M  L  I  Q  S  I  M  N  V  T  S  S  L  I  K  V  M  F  T  V  S  V  L  S  L  L  N  L  S  H  Q  C  L  L  L  I  L  P  G  V  D  M  K  S  I  W  P  T  *  Q  *  T  G  F  R  D  V  H  L  M  S  *  L  I  H  L  W  D  L  N  Q  M  H  R  L  *  E  *  L  L  Q  *  Q  S  *  H  F  N  A  C  S  L  K  Q  T  *  D  Q  K  W  M  K  Y  *  R  H  L  N  I  Y  K  A  P  I  L  I  T  S  K  M  R  R  R  M  T  Q  L  S </second_frame>
            <third_frame>   N  *  N  S  L  S  P  T  A  S  K  S  C  Y  P  L  W  L  H  I  K  A  *  P  *  T  P  P  C  L  *  I  H  S  Q  W  N  S  G  R  S  P  E  W  G  *  S  K  G  R  I  P  P  M  A  Y  P  H  E  Y  C  C  R  N  C  L  C  I  G  L  P  P  C  F  W  H  N  T  S  R  C  K  D  *  Q  H  T  P  R  Q  Q  L  L  C  Q  S  C  R  F  W  A  F  E  T  F  S  K  *  C  Y  S  C  L  N  C  S  S  R  D  C  W  I  C  *  S  R  V  S  *  M  L  P  A  H  *  *  K  *  C  L  Q  F  R  C  C  P  C  *  T  Y  L  I  N  A  C  C  *  Y  Y  Q  E  S  T  *  N  Q  F  G  Q  L  S  N  K  Q  D  S  E  M  C  I  *  *  A  D  *  S  I  S  G  I  *  I  R  C  T  G  Y  E  N  D  Y  F  S  S  R  A  S  I  S  M  L  A  A  *  N  R  L  E  T  K  N  G  *  S  I  R  D  T  *  T  Y  T  R  H  L  Y  *  S  H  Q  R  *  E  D  E  *  L  N  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75487" stop="76236"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIEILSRLRHRNLVTLYGCTSKHSRELLLVYEYIPNGTVADHLNGDRAKDGFLPWPIRMNIAVETACALAYLHASGTIHRDVKTSNILLDSNCCVKVADFGLSRLFPNDATHVSTAPQGTAGYVDPEYHECYQLTDKSDVYSFGVVLVELISSMPAVDITRSRHEINLANLAINRIQRCAFDELIDPSLGFKSDAQVMRMTTSVAELAFQCLQLETDLRPKMDEVLETLKHIQGTYTDHIKDEKTNDSIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="78087" PGL_stop="78746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78087" e_stop="78746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="78087" e_stop="78746" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78087" stop="78746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78087" stop="78744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAATGGAGAGTGGAAAAGTCTTTAATTTTGACCCTCACTTGAAGTTTGTTTCATTTTTCCAAAGTCTTGGTAACAAAATTCCAAGTTCACATATAGAAAAATAAACCAGATAACAAGGTTAAATTCCAATTTCTTGCTGTGTGAGACCATATAGAGTAAACAATATGGCTTCTGTTTTCTTTTTTTTGTGTTGTGTAGTGATCTTTAGCCTACATCAAGTACTAGGTAATTCCAAATCCAACTGCACCGATGAGTTCGAGTGTGGAGGCCTTGGAGCTATGAAGTTTCCTTTCACAAATACCACCAACCCTGAGTGTGGATTATGCAGGTTTGATTGTCATACTAAACCATATCCTACAATTAAACTTGGTGGACACAAATATGATGCTGTAGTGAAGAGGGGTGATTTATTCCTTATTTCAGATCCTAAACTTCAAGAGTACTTAGAGCACAAAAGTTGCAAGTCTTTTGACAGAAACTTCTCATTTCCAAATTCCCCTTTGATTTCTTTCCAAATTGTTCCTAACTTAACCTTGTACAAATGCAAACATAGCCATAAAAACAACATCCAGAAGACAAATGATTCTTTTTTCAAAGATTTTGATCAATATACTGAGTGTGAAGGTTTTAATGTTTACTATCACCATCCCAAGAAAAC</gDNA_template>
            <first_frame> E  N  G  E  W  K  S  L  *  F  *  P  S  L  E  V  C  F  I  F  P  K  S  W  *  Q  N  S  K  F  T  Y  R  K  I  N  Q  I  T  R  L  N  S  N  F  L  L  C  E  T  I  *  S  K  Q  Y  G  F  C  F  L  F  F  V  L  C  S  D  L  *  P  T  S  S  T  R  *  F  Q  I  Q  L  H  R  *  V  R  V  W  R  P  W  S  Y  E  V  S  F  H  K  Y  H  Q  P  *  V  W  I  M  Q  V  *  L  S  Y  *  T  I  S  Y  N  *  T  W  W  T  Q  I  *  C  C  S  E  E  G  *  F  I  P  Y  F  R  S  *  T  S  R  V  L  R  A  Q  K  L  Q  V  F  *  Q  K  L  L  I  S  K  F  P  F  D  F  F  P  N  C  S  *  L  N  L  V  Q  M  Q  T  *  P  *  K  Q  H  P  E  D  K  *  F  F  F  Q  R  F  *  S  I  Y  *  V  *  R  F  *  C  L  L  S  P  S  Q  E  N </first_frame>
            <second_frame>  R  M  E  S  G  K  V  F  N  F  D  P  H  L  K  F  V  S  F  F  Q  S  L  G  N  K  I  P  S  S  H  I  E  K  *  T  R  *  Q  G  *  I  P  I  S  C  C  V  R  P  Y  R  V  N  N  M  A  S  V  F  F  F  L  C  C  V  V  I  F  S  L  H  Q  V  L  G  N  S  K  S  N  C  T  D  E  F  E  C  G  G  L  G  A  M  K  F  P  F  T  N  T  T  N  P  E  C  G  L  C  R  F  D  C  H  T  K  P  Y  P  T  I  K  L  G  G  H  K  Y  D  A  V  V  K  R  G  D  L  F  L  I  S  D  P  K  L  Q  E  Y  L  E  H  K  S  C  K  S  F  D  R  N  F  S  F  P  N  S  P  L  I  S  F  Q  I  V  P  N  L  T  L  Y  K  C  K  H  S  H  K  N  N  I  Q  K  T  N  D  S  F  F  K  D  F  D  Q  Y  T  E  C  E  G  F  N  V  Y  Y  H  H  P  K  K   </second_frame>
            <third_frame>   E  W  R  V  E  K  S  L  I  L  T  L  T  *  S  L  F  H  F  S  K  V  L  V  T  K  F  Q  V  H  I  *  K  N  K  P  D  N  K  V  K  F  Q  F  L  A  V  *  D  H  I  E  *  T  I  W  L  L  F  S  F  F  C  V  V  *  *  S  L  A  Y  I  K  Y  *  V  I  P  N  P  T  A  P  M  S  S  S  V  E  A  L  E  L  *  S  F  L  S  Q  I  P  P  T  L  S  V  D  Y  A  G  L  I  V  I  L  N  H  I  L  Q  L  N  L  V  D  T  N  M  M  L  *  *  R  G  V  I  Y  S  L  F  Q  I  L  N  F  K  S  T  *  S  T  K  V  A  S  L  L  T  E  T  S  H  F  Q  I  P  L  *  F  L  S  K  L  F  L  T  *  P  C  T  N  A  N  I  A  I  K  T  T  S  R  R  Q  M  I  L  F  S  K  I  L  I  N  I  L  S  V  K  V  L  M  F  T  I  T  I  P  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78211" stop="78744"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPISCCVRPYRVNNMASVFFFLCCVVIFSLHQVLGNSKSNCTDEFECGGLGAMKFPFTNTTNPECGLCRFDCHTKPYPTIKLGGHKYDAVVKRGDLFLISDPKLQEYLEHKSCKSFDRNFSFPNSPLISFQIVPNLTLYKCKHSHKNNIQKTNDSFFKDFDQYTECEGFNVYYHHPKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="80518" PGL_stop="81318"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80518" e_stop="80575"/>
            <exon e_start="80677" e_stop="81318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.376" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80518" e_stop="80575" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.376" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80576" i_stop="80676" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80677" e_stop="81318" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80518" stop="80575"/>
              <exon start="80677" stop="81318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371857" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGACTTTTCCCCAACAACGTTACTCACATATCAACAGCTCCTCAAGGAACACTCGG : CTGTTGACTTGAACAGGCAAAAGAACGAGGTCAATTTGGCTAACTTGGCGATAAACAGGATACAAAGATGTGCATTTGATGAACTGATCGATCCATCACTCGGGCTAAACTCAGATACGCTTGCTAAGAAAATGACAATCTCTGTCGCGGAGCTAGCTTTTCGATGCTTGCAACTTGATAAGGATATCAGGCCAACAATGGATGAAGTATTGGACATTTTAAGAAAGATCCAAGGTGGAGAGTTTCATCAAAATGAGAAGACATTTGACAATTTATTCAAGTCTAAGAGTGTTGATATCCCTCCATTTTCCTCTGAATCAGATGAAGTTGCACTGTTAAAGAAAGTTAAGTTCATAAGTTCGTCAGATACTAATAGTGAGGTATGGATTAGTGGCTCTACCACAACAAGCACTAGTGAGTGAGTGAGTGACTATCTATGTTGCTCGGAAACTCAAAAAATATTGCTGCACTCGTGACAAATCCTTGTAAAATGTGTGGCTTTTGAAGGATCTGACGATATTTTTGAAGAGTTCGAGAGGTGAATATCTTAGCTAATGTAGTTTTCAGACTTCAGAATCTACTAACTCTTAGCTAAAGCATTTGAGCTTATAGGAATTTTACATATAATAAATTATGTTCATG</gDNA_template>
            <first_frame> R  D  F  S  P  T  T  L  L  T  Y  Q  Q  L  L  K  E  H  S   : A  V  D  L  N  R  Q  K  N  E  V  N  L  A  N  L  A  I  N  R  I  Q  R  C  A  F  D  E  L  I  D  P  S  L  G  L  N  S  D  T  L  A  K  K  M  T  I  S  V  A  E  L  A  F  R  C  L  Q  L  D  K  D  I  R  P  T  M  D  E  V  L  D  I  L  R  K  I  Q  G  G  E  F  H  Q  N  E  K  T  F  D  N  L  F  K  S  K  S  V  D  I  P  P  F  S  S  E  S  D  E  V  A  L  L  K  K  V  K  F  I  S  S  S  D  T  N  S  E  V  W  I  S  G  S  T  T  T  S  T  S  E  *  V  S  D  Y  L  C  C  S  E  T  Q  K  I  L  L  H  S  *  Q  I  L  V  K  C  V  A  F  E  G  S  D  D  I  F  E  E  F  E  R  *  I  S  *  L  M  *  F  S  D  F  R  I  Y  *  L  L  A  K  A  F  E  L  I  G  I  L  H  I  I  N  Y  V  H  </first_frame>
            <second_frame>  E  T  F  P  Q  Q  R  Y  S  H  I  N  S  S  S  R  N  T  R  :  L  L  T  *  T  G  K  R  T  R  S  I  W  L  T  W  R  *  T  G  Y  K  D  V  H  L  M  N  *  S  I  H  H  S  G  *  T  Q  I  R  L  L  R  K  *  Q  S  L  S  R  S  *  L  F  D  A  C  N  L  I  R  I  S  G  Q  Q  W  M  K  Y  W  T  F  *  E  R  S  K  V  E  S  F  I  K  M  R  R  H  L  T  I  Y  S  S  L  R  V  L  I  S  L  H  F  P  L  N  Q  M  K  L  H  C  *  R  K  L  S  S  *  V  R  Q  I  L  I  V  R  Y  G  L  V  A  L  P  Q  Q  A  L  V  S  E  *  V  T  I  Y  V  A  R  K  L  K  K  Y  C  C  T  R  D  K  S  L  *  N  V  W  L  L  K  D  L  T  I  F  L  K  S  S  R  G  E  Y  L  S  *  C  S  F  Q  T  S  E  S  T  N  S  *  L  K  H  L  S  L  *  E  F  Y  I  *  *  I  M  F  M </second_frame>
            <third_frame>   R  L  F  P  N  N  V  T  H  I  S  T  A  P  Q  G  T  L  G :   C  *  L  E  Q  A  K  E  R  G  Q  F  G  *  L  G  D  K  Q  D  T  K  M  C  I  *  *  T  D  R  S  I  T  R  A  K  L  R  Y  A  C  *  E  N  D  N  L  C  R  G  A  S  F  S  M  L  A  T  *  *  G  Y  Q  A  N  N  G  *  S  I  G  H  F  K  K  D  P  R  W  R  V  S  S  K  *  E  D  I  *  Q  F  I  Q  V  *  E  C  *  Y  P  S  I  F  L  *  I  R  *  S  C  T  V  K  E  S  *  V  H  K  F  V  R  Y  *  *  *  G  M  D  *  W  L  Y  H  N  K  H  *  *  V  S  E  *  L  S  M  L  L  G  N  S  K  N  I  A  A  L  V  T  N  P  C  K  M  C  G  F  *  R  I  *  R  Y  F  *  R  V  R  E  V  N  I  L  A  N  V  V  F  R  L  Q  N  L  L  T  L  S  *  S  I  *  A  Y  R  N  F  T  Y  N  K  L  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80518" stop="80575"/>
                    <exon start="80677" stop="81098"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDFSPTTLLTYQQLLKEHSAVDLNRQKNEVNLANLAINRIQRCAFDELIDPSLGLNSDTLAKKMTISVAELAFRCLQLDKDIRPTMDEVLDILRKIQGGEFHQNEKTFDNLFKSKSVDIPPFSSESDEVALLKKVKFISSSDTNSEVWISGSTTTSTSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="86859" PGL_stop="87390"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86859" e_stop="87259"/>
            <exon e_start="87346" e_stop="87390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.994" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="86859" e_stop="87259" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.994">
            <gDNA_intron_boundary i_start="87260" i_stop="87345" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87346" e_stop="87390" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86859" stop="87259"/>
              <exon start="87346" stop="87379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87111" stop="87259"/>
              <exon start="87346" stop="87390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539616" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTCGACTTTATCAAATGCAACAGCACTAGTAGTAGCACCCCAAACATTACCAATAAGATGAAAGATCATTTTGCTGGTTATAGAATGTACAATGGCTGTAAAGGCTTTAGCATATACTACAAGCTTCCTGGAGGTGATGGTAAACACGTTCGAGCAGGCAATCTTCCTGCCAACTGTTCACTTATCACATTGCCGATACGCCCGCCATCAGATGATGGTGGTTTGTTCAATATGTTAATTGCTGGTTTTCTAGTAGAATGGAAACTGTCTGAGGACTGTTACAAATGTCACTATCGCGGAGGTCAATGCCAGACTAATATAACCAACAGATTTCATTGTGCATATCCAAATAAGCCACATGATCAAGGTCATCAAGAGAATAATCAACATGAACAAG : ATGTAAAAACGGCTAGAAGAAAGTTCAGACTGACTCTGGGAGCAG</gDNA_template>
            <first_frame> F  S  R  L  Y  Q  M  Q  Q  H  *  *  *  H  P  K  H  Y  Q  *  D  E  R  S  F  C  W  L  *  N  V  Q  W  L  *  R  L  *  H  I  L  Q  A  S  W  R  *  W  *  T  R  S  S  R  Q  S  S  C  Q  L  F  T  Y  H  I  A  D  T  P  A  I  R  *  W  W  F  V  Q  Y  V  N  C  W  F  S  S  R  M  E  T  V  *  G  L  L  Q  M  S  L  S  R  R  S  M  P  D  *  Y  N  Q  Q  I  S  L  C  I  S  K  *  A  T  *  S  R  S  S  R  E  *  S  T  *  T  R :   C  K  N  G  *  K  K  V  Q  T  D  S  G  S   </first_frame>
            <second_frame>  F  L  D  F  I  K  C  N  S  T  S  S  S  T  P  N  I  T  N  K  M  K  D  H  F  A  G  Y  R  M  Y  N  G  C  K  G  F  S  I  Y  Y  K  L  P  G  G  D  G  K  H  V  R  A  G  N  L  P  A  N  C  S  L  I  T  L  P  I  R  P  P  S  D  D  G  G  L  F  N  M  L  I  A  G  F  L  V  E  W  K  L  S  E  D  C  Y  K  C  H  Y  R  G  G  Q  C  Q  T  N  I  T  N  R  F  H  C  A  Y  P  N  K  P  H  D  Q  G  H  Q  E  N  N  Q  H  E  Q   : D  V  K  T  A  R  R  K  F  R  L  T  L  G  A  </second_frame>
            <third_frame>   F  S  T  L  S  N  A  T  A  L  V  V  A  P  Q  T  L  P  I  R  *  K  I  I  L  L  V  I  E  C  T  M  A  V  K  A  L  A  Y  T  T  S  F  L  E  V  M  V  N  T  F  E  Q  A  I  F  L  P  T  V  H  L  S  H  C  R  Y  A  R  H  Q  M  M  V  V  C  S  I  C  *  L  L  V  F  *  *  N  G  N  C  L  R  T  V  T  N  V  T  I  A  E  V  N  A  R  L  I  *  P  T  D  F  I  V  H  I  Q  I  S  H  M  I  K  V  I  K  R  I  I  N  M  N  K  :  M  *  K  R  L  E  E  S  S  D  *  L  W  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86860" stop="87259"/>
                    <exon start="87346" stop="87389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLDFIKCNSTSSSTPNITNKMKDHFAGYRMYNGCKGFSIYYKLPGGDGKHVRAGNLPANCSLITLPIRPPSDDGGLFNMLIAGFLVEWKLSEDCYKCHYRGGQCQTNITNRFHCAYPNKPHDQGHQENNQHEQDVKTARRKFRLTLGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="89250" PGL_stop="97166"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89250" e_stop="89384"/>
            <exon e_start="94785" e_stop="94973"/>
            <exon e_start="95379" e_stop="95400"/>
            <exon e_start="95925" e_stop="96041"/>
            <exon e_start="96142" e_stop="96231"/>
            <exon e_start="96496" e_stop="96750"/>
            <exon e_start="96824" e_stop="96833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.646" e_score="0.896"/>
          <exon-intron don_prob="0.000" acc_prob="0.789" e_score="0.905"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.545"/>
          <exon-intron don_prob="0.981" acc_prob="0.813" e_score="0.872"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.867"/>
          <exon-intron don_prob="0.581" acc_prob="0.999" e_score="0.937"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="89250" e_stop="89384" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.646">
            <gDNA_intron_boundary i_start="89385" i_stop="94784" i_length="5400"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="94785" e_stop="94973" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.789">
            <gDNA_intron_boundary i_start="94974" i_stop="95378" i_length="405"/>
          </intron>
          <exon e_serial="3" e_score="0.545">
            <gDNA_exon_boundary e_start="95379" e_stop="95400" e_length="22"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95401" i_stop="95924" i_length="524"/>
          </intron>
          <exon e_serial="4" e_score="0.872">
            <gDNA_exon_boundary e_start="95925" e_stop="96041" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.813">
            <gDNA_intron_boundary i_start="96042" i_stop="96141" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.867">
            <gDNA_exon_boundary e_start="96142" e_stop="96231" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96232" i_stop="96495" i_length="264"/>
          </intron>
          <exon e_serial="6" e_score="0.937">
            <gDNA_exon_boundary e_start="96496" e_stop="96750" e_length="255"/>
          </exon>
          <intron i_serial="6" don_prob="0.581" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96751" i_stop="96823" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="96824" e_stop="96833" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89250" stop="89384"/>
              <exon start="94785" stop="94973"/>
              <exon start="95379" stop="95400"/>
              <exon start="95925" stop="96041"/>
              <exon start="96142" stop="96231"/>
              <exon start="96496" stop="96750"/>
              <exon start="96824" stop="96833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAAATGAATATTGCTTCTATTTCGACAGTTCAAGTCATCCATTTCCAAAGACTTAGAAGTTGCTGTCCTTTTTTTATTTTTGCAGACTTAAGAAGTCAAGTCTTACCCCTGGTGTCAATGGCTAAAGGCCAAT : TTAACTTAACGCAATGGCACAAGAATATTATACACTTTCAGAACACAGAAGAGGTTGTTGAATCCTCGCAGGTCGGAGAATGTAAAGGGGATCACCATAGTGACAATGGCTCCTCCGTAGAAAGGCCCCCGCGTTGTTTCAGGTTCAAAACTGGTGATACAGAAAATGAATGGGAGAAGGTTAATAGTA : TTCAGGCAAATGGAAGAAATGA : ACGTGTTGGGTCCTGAAATTCTAGTAGAATGGAAGTTATCCGAGGAATGTAACAAATGTCATTATGGTGGAGGTGAATGCCAGGCTAATAAAACCAACAAATTTTCTTGTCACAAAG : ATGCAAAAACACCTACAGGTAGTATCGATCAAAGAAAAGAAACAACCGAAAGAAATGGAAGAAATATGGTGGGGCCGATTCTGGGAACAG : TCTTTGGCGGAGTAGGATCGGTGATGATAACTTCTTCAGCTGTATACTTTATCTGGCGTTACAAGAAGAGGAGATTTAGTTCATCCCGCTTCTTCTCAACAAGGAAATTATCAGATATCTTTAACCATGATGTTGAGGGAGGCAGTATATACTTTGGTATCCCAGTTTTCTCTTATTCAGAACTTGAAGAGGCCACCGATGATTTCAATTCCTCTAGAGTACTTGGAGATGGAGGTTTTGGAACTGTTTACTATG : GAAAACTTAA</gDNA_template>
            <first_frame> L  K  *  I  L  L  L  F  R  Q  F  K  S  S  I  S  K  D  L  E  V  A  V  L  F  L  F  L  Q  T  *  E  V  K  S  Y  P  W  C  Q  W  L  K  A  N  :  L  T  *  R  N  G  T  R  I  L  Y  T  F  R  T  Q  K  R  L  L  N  P  R  R  S  E  N  V  K  G  I  T  I  V  T  M  A  P  P  *  K  G  P  R  V  V  S  G  S  K  L  V  I  Q  K  M  N  G  R  R  L  I  V  :  F  R  Q  M  E  E  M   : N  V  L  G  P  E  I  L  V  E  W  K  L  S  E  E  C  N  K  C  H  Y  G  G  G  E  C  Q  A  N  K  T  N  K  F  S  C  H  K   : D  A  K  T  P  T  G  S  I  D  Q  R  K  E  T  T  E  R  N  G  R  N  M  V  G  P  I  L  G  T   : V  F  G  G  V  G  S  V  M  I  T  S  S  A  V  Y  F  I  W  R  Y  K  K  R  R  F  S  S  S  R  F  F  S  T  R  K  L  S  D  I  F  N  H  D  V  E  G  G  S  I  Y  F  G  I  P  V  F  S  Y  S  E  L  E  E  A  T  D  D  F  N  S  S  R  V  L  G  D  G  G  F  G  T  V  Y  Y   : G  K  L   </first_frame>
            <second_frame>  *  N  E  Y  C  F  Y  F  D  S  S  S  H  P  F  P  K  T  *  K  L  L  S  F  F  Y  F  C  R  L  K  K  S  S  L  T  P  G  V  N  G  *  R  P  I :   *  L  N  A  M  A  Q  E  Y  Y  T  L  S  E  H  R  R  G  C  *  I  L  A  G  R  R  M  *  R  G  S  P  *  *  Q  W  L  L  R  R  K  A  P  A  L  F  Q  V  Q  N  W  *  Y  R  K  *  M  G  E  G  *  *  Y :   S  G  K  W  K  K  *  :  T  C  W  V  L  K  F  *  *  N  G  S  Y  P  R  N  V  T  N  V  I  M  V  E  V  N  A  R  L  I  K  P  T  N  F  L  V  T  K  :  M  Q  K  H  L  Q  V  V  S  I  K  E  K  K  Q  P  K  E  M  E  E  I  W  W  G  R  F  W  E  Q  :  S  L  A  E  *  D  R  *  *  *  L  L  Q  L  Y  T  L  S  G  V  T  R  R  G  D  L  V  H  P  A  S  S  Q  Q  G  N  Y  Q  I  S  L  T  M  M  L  R  E  A  V  Y  T  L  V  S  Q  F  S  L  I  Q  N  L  K  R  P  P  M  I  S  I  P  L  E  Y  L  E  M  E  V  L  E  L  F  T  M  :  E  N  L  </second_frame>
            <third_frame>   E  M  N  I  A  S  I  S  T  V  Q  V  I  H  F  Q  R  L  R  S  C  C  P  F  F  I  F  A  D  L  R  S  Q  V  L  P  L  V  S  M  A  K  G  Q   : F  N  L  T  Q  W  H  K  N  I  I  H  F  Q  N  T  E  E  V  V  E  S  S  Q  V  G  E  C  K  G  D  H  H  S  D  N  G  S  S  V  E  R  P  P  R  C  F  R  F  K  T  G  D  T  E  N  E  W  E  K  V  N  S   : I  Q  A  N  G  R  N  E :   R  V  G  S  *  N  S  S  R  M  E  V  I  R  G  M  *  Q  M  S  L  W  W  R  *  M  P  G  *  *  N  Q  Q  I  F  L  S  Q  R :   C  K  N  T  Y  R  *  Y  R  S  K  K  R  N  N  R  K  K  W  K  K  Y  G  G  A  D  S  G  N  S :   L  W  R  S  R  I  G  D  D  N  F  F  S  C  I  L  Y  L  A  L  Q  E  E  E  I  *  F  I  P  L  L  L  N  K  E  I  I  R  Y  L  *  P  *  C  *  G  R  Q  Y  I  L  W  Y  P  S  F  L  L  F  R  T  *  R  G  H  R  *  F  Q  F  L  *  S  T  W  R  W  R  F  W  N  C  L  L  W :   K  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94905" stop="94973"/>
                    <exon start="95379" stop="95400"/>
                    <exon start="95925" stop="96041"/>
                    <exon start="96142" stop="96231"/>
                    <exon start="96496" stop="96750"/>
                    <exon start="96824" stop="96831"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGPRVVSGSKLVIQKMNGRRLIVFRQMEEMNVLGPEILVEWKLSEECNKCHYGGGECQANKTNKFSCHKDAKTPTGSIDQRKETTERNGRNMVGPILGTVFGGVGSVMITSSAVYFIWRYKKRRFSSSRFFSTRKLSDIFNHDVEGGSIYFGIPVFSYSELEEATDDFNSSRVLGDGGFGTVYYGKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="95501" e_stop="95755"/>
            <exon e_start="96610" e_stop="96750"/>
            <exon e_start="96824" e_stop="97166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.961"/>
          <exon-intron don_prob="0.581" acc_prob="0.999" e_score="0.986"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="95501" e_stop="95755" e_length="255"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95756" i_stop="96609" i_length="854"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="96610" e_stop="96750" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.581" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96751" i_stop="96823" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="96824" e_stop="97166" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95501" stop="95755"/>
              <exon start="96610" stop="96750"/>
              <exon start="96824" stop="97166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGTGATGCTAAACCGTATCCGAGAATCCGACTTCTTCCTGAGGGAGATTGGTACTATGCTTTAGAGATGCATAATTCATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGAAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATACTCTCCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACATTACGCAG : ATATCTTTAACCATGATGTTGAGGGAGGCAGTATATACTTTGGTATCCCAGTTTTCTCTTATTCAGAACTTGAAGAGGCCACCGATGATTTCAATTCCTCTAGAGTACTTGGAGATGGAGGTTTTGGAACTGTTTACTATG : GAAAACTTAAAGATGAACGGGAGATTGCTGTAAAGCGCCTCTACGAGCACAACTGCAAGCGAATGGAGCAGTTTGTAAACGAAGTTGATATCCTTACTAGACTAAGGCACAACAATCTTGTCACCCTCTATGGATGCACTTCAAGGCGAAGCCGTGAACTACTCCTTGTCTATGAATATATTCCTAATGGCACTCTTGCTGATCACCTTCATGGTAACAGAGCGAAGGGCGGATTACTTACCTGGCCAATCCGCATGAACATTGCCATAGAAACTGCTGGTGCATTGGCTTACCTGCATGCTTCTGATGTAATACACTGTGATGTCAAGACTAATAACATACT</gDNA_template>
            <first_frame> G  C  D  A  K  P  Y  P  R  I  R  L  L  P  E  G  D  W  Y  Y  A  L  E  M  H  N  S  S  V  W  L  G  D  T  K  L  Q  T  T  L  T  K  H  K  C  Q  A  F  N  K  N  F  S  L  P  Y  S  P  F  M  S  F  H  M  I  N  I  I  S  F  Y  K  C  I  S  T  S  N  N  T  R  N  I  T  Q  :  I  S  L  T  M  M  L  R  E  A  V  Y  T  L  V  S  Q  F  S  L  I  Q  N  L  K  R  P  P  M  I  S  I  P  L  E  Y  L  E  M  E  V  L  E  L  F  T  M  :  E  N  L  K  M  N  G  R  L  L  *  S  A  S  T  S  T  T  A  S  E  W  S  S  L  *  T  K  L  I  S  L  L  D  *  G  T  T  I  L  S  P  S  M  D  A  L  Q  G  E  A  V  N  Y  S  L  S  M  N  I  F  L  M  A  L  L  L  I  T  F  M  V  T  E  R  R  A  D  Y  L  P  G  Q  S  A  *  T  L  P  *  K  L  L  V  H  W  L  T  C  M  L  L  M  *  Y  T  V  M  S  R  L  I  T  Y  </first_frame>
            <second_frame>  V  V  M  L  N  R  I  R  E  S  D  F  F  L  R  E  I  G  T  M  L  *  R  C  I  I  H  Q  F  G  L  G  T  R  S  F  K  Q  R  *  R  N  T  S  A  R  L  L  T  K  I  S  P  F  H  T  L  L  L  C  L  S  I  *  L  I  *  *  A  S  T  N  A  S  V  P  V  I  I  P  V  T  L  R  R :   Y  L  *  P  *  C  *  G  R  Q  Y  I  L  W  Y  P  S  F  L  L  F  R  T  *  R  G  H  R  *  F  Q  F  L  *  S  T  W  R  W  R  F  W  N  C  L  L  W :   K  T  *  R  *  T  G  D  C  C  K  A  P  L  R  A  Q  L  Q  A  N  G  A  V  C  K  R  S  *  Y  P  Y  *  T  K  A  Q  Q  S  C  H  P  L  W  M  H  F  K  A  K  P  *  T  T  P  C  L  *  I  Y  S  *  W  H  S  C  *  S  P  S  W  *  Q  S  E  G  R  I  T  Y  L  A  N  P  H  E  H  C  H  R  N  C  W  C  I  G  L  P  A  C  F  *  C  N  T  L  *  C  Q  D  *  *  H  T </second_frame>
            <third_frame>   L  *  C  *  T  V  S  E  N  P  T  S  S  *  G  R  L  V  L  C  F  R  D  A  *  F  I  S  L  A  W  G  H  E  A  S  N  N  V  D  E  T  Q  V  P  G  F  *  Q  K  F  L  P  S  I  L  S  F  Y  V  F  P  Y  D  *  Y  N  K  L  L  Q  M  H  Q  Y  Q  *  *  Y  P  *  H  Y  A   : D  I  F  N  H  D  V  E  G  G  S  I  Y  F  G  I  P  V  F  S  Y  S  E  L  E  E  A  T  D  D  F  N  S  S  R  V  L  G  D  G  G  F  G  T  V  Y  Y   : G  K  L  K  D  E  R  E  I  A  V  K  R  L  Y  E  H  N  C  K  R  M  E  Q  F  V  N  E  V  D  I  L  T  R  L  R  H  N  N  L  V  T  L  Y  G  C  T  S  R  R  S  R  E  L  L  L  V  Y  E  Y  I  P  N  G  T  L  A  D  H  L  H  G  N  R  A  K  G  G  L  L  T  W  P  I  R  M  N  I  A  I  E  T  A  G  A  L  A  Y  L  H  A  S  D  V  I  H  C  D  V  K  T  N  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95746" stop="95755"/>
                    <exon start="96610" stop="96750"/>
                    <exon start="96824" stop="97164"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HYADIFNHDVEGGSIYFGIPVFSYSELEEATDDFNSSRVLGDGGFGTVYYGKLKDEREIAVKRLYEHNCKRMEQFVNEVDILTRLRHNNLVTLYGCTSRRSRELLLVYEYIPNGTLADHLHGNRAKGGLLTWPIRMNIAIETAGALAYLHASDVIHCDVKTNNI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95501" stop="95755"/>
                    <exon start="96610" stop="96750"/>
                    <exon start="96824" stop="96856"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCDAKPYPRIRLLPEGDWYYALEMHNSSVWLGDTKLQTTLTKHKCQAFNKNFSLPYSPFMSFHMINIISFYKCISTSNNTRNITQISLTMMLREAVYTLVSQFSLIQNLKRPPMISIPLEYLEMEVLELFTMENLKMNGRLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="95379" e_stop="95971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="95379" e_stop="95971" e_length="593"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95379" stop="95971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGGCAAATGGAAGAAATGATTCGACTTGTCCAAAGTCGTTTTCATGTGGAAATTTTACTGACCTGAGATTTCCTCTCTCTCTTTCCACACAACCTGAATGTGGAATAATGTTCTTATCTGGTTGTGATGCTAAACCGTATCCGAGAATCCGACTTCTTCCTGAGGGAGATTGGTACTATGCTTTAGAGATGCATAATTCATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGAAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATACTCTCCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACATTACGCAGAAGGAGAACGATCATTTTTCTGGTTATAATATGTACAATGGCTGTGAAGGCTTTAGCATATACTACAACCTTTCCCGACATGATGATGAATACATAGGAGCAGACAATCTTCCTACCAACTGTTCACTTATCAGATTGCCAATTCAGGCAACTCATGGTGATTTGTTCGACGTGTTGGGTCCTGAAATTCTAGTAGAATGGAAGTTATCCGAGGAA</gDNA_template>
            <first_frame> F  R  Q  M  E  E  M  I  R  L  V  Q  S  R  F  H  V  E  I  L  L  T  *  D  F  L  S  L  F  P  H  N  L  N  V  E  *  C  S  Y  L  V  V  M  L  N  R  I  R  E  S  D  F  F  L  R  E  I  G  T  M  L  *  R  C  I  I  H  Q  F  G  L  G  T  R  S  F  K  Q  R  *  R  N  T  S  A  R  L  L  T  K  I  S  P  F  H  T  L  L  L  C  L  S  I  *  L  I  *  *  A  S  T  N  A  S  V  P  V  I  I  P  V  T  L  R  R  R  R  T  I  I  F  L  V  I  I  C  T  M  A  V  K  A  L  A  Y  T  T  T  F  P  D  M  M  M  N  T  *  E  Q  T  I  F  L  P  T  V  H  L  S  D  C  Q  F  R  Q  L  M  V  I  C  S  T  C  W  V  L  K  F  *  *  N  G  S  Y  P  R   </first_frame>
            <second_frame>  S  G  K  W  K  K  *  F  D  L  S  K  V  V  F  M  W  K  F  Y  *  P  E  I  S  S  L  S  F  H  T  T  *  M  W  N  N  V  L  I  W  L  *  C  *  T  V  S  E  N  P  T  S  S  *  G  R  L  V  L  C  F  R  D  A  *  F  I  S  L  A  W  G  H  E  A  S  N  N  V  D  E  T  Q  V  P  G  F  *  Q  K  F  L  P  S  I  L  S  F  Y  V  F  P  Y  D  *  Y  N  K  L  L  Q  M  H  Q  Y  Q  *  *  Y  P  *  H  Y  A  E  G  E  R  S  F  F  W  L  *  Y  V  Q  W  L  *  R  L  *  H  I  L  Q  P  F  P  T  *  *  *  I  H  R  S  R  Q  S  S  Y  Q  L  F  T  Y  Q  I  A  N  S  G  N  S  W  *  F  V  R  R  V  G  S  *  N  S  S  R  M  E  V  I  R  G  </second_frame>
            <third_frame>   Q  A  N  G  R  N  D  S  T  C  P  K  S  F  S  C  G  N  F  T  D  L  R  F  P  L  S  L  S  T  Q  P  E  C  G  I  M  F  L  S  G  C  D  A  K  P  Y  P  R  I  R  L  L  P  E  G  D  W  Y  Y  A  L  E  M  H  N  S  S  V  W  L  G  D  T  K  L  Q  T  T  L  T  K  H  K  C  Q  A  F  N  K  N  F  S  L  P  Y  S  P  F  M  S  F  H  M  I  N  I  I  S  F  Y  K  C  I  S  T  S  N  N  T  R  N  I  T  Q  K  E  N  D  H  F  S  G  Y  N  M  Y  N  G  C  E  G  F  S  I  Y  Y  N  L  S  R  H  D  D  E  Y  I  G  A  D  N  L  P  T  N  C  S  L  I  R  L  P  I  Q  A  T  H  G  D  L  F  D  V  L  G  P  E  I  L  V  E  W  K  L  S  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95381" stop="95971"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QANGRNDSTCPKSFSCGNFTDLRFPLSLSTQPECGIMFLSGCDAKPYPRIRLLPEGDWYYALEMHNSSVWLGDTKLQTTLTKHKCQAFNKNFSLPYSPFMSFHMINIISFYKCISTSNNTRNITQKENDHFSGYNMYNGCEGFSIYYNLSRHDDEYIGADNLPTNCSLIRLPIQATHGDLFDVLGPEILVEWKLSEE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="97899" PGL_stop="97092"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97899" e_stop="97092"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="97899" e_stop="97092" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97899" stop="97092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTAAACTTTTATAGAAATTAAAAATTGCATCACTTACACTCATAGTACATAGCTCAAGAAACTTCTCACAGTAGTACATTTTGCAGTCTCCCAAAATATACATAAAAGTGACAAAGAAACGGATTACAGAAATCTTAACTACTGTGTACAAGTTCTATCAGAGCAAGTATTCCATTCATCAGTCACAGAATTTGAAGAAGGCAGTGATTTAACTTTCTTCAACAAAACAATATCTTTTGATTCAGGGAAAGGAGGAGCAACTACTATTTTAGCTTCATTGGCATTGAGATTAGTCTGAATCTCCTTTAGAGTATCCAAAACTTCAACCATAGTAGGCCTCACGTTCCTATCTGTCTGCAAGCACAGAAAAGCCAGCTCTGCTACTGAAGTAGTCATTTCCCGAGTTTTGGTATCTGAATCGTACCCCAGGGATGGATCAATCAGCTTGTTAACAGCAGATTTTACAATCTTGTTTATTGCATAGTTAGCCAAATTGATCTCTTGGCTATGTCTGTTCATATCCACAGCCGGCATTGATGAAATGAGTTCAACAAGGACCACCCCGAAGCTATAGACATCGCTTTTACTAGTCAGCTGGTAACATTCATGATACTTTGGATCAATATAGCCAGGGGTACCCCGGGGTGTGGTTGAAATATGAGAGACGTCGTTTGGGAAGAGCCTTGAAATCCCAAAATCTGCAACTTTAACACTAAAGTTGTGGTCAAGGAGTATGTTATTAGTCTTGACATCACAGTGTATTACATCAGAAGCATGCAGGTAAGCCAATGCACCAGCAGTTTCT</gDNA_template>
            <first_frame> N  L  N  F  Y  R  N  *  K  L  H  H  L  H  S  *  Y  I  A  Q  E  T  S  H  S  S  T  F  C  S  L  P  K  Y  T  *  K  *  Q  R  N  G  L  Q  K  S  *  L  L  C  T  S  S  I  R  A  S  I  P  F  I  S  H  R  I  *  R  R  Q  *  F  N  F  L  Q  Q  N  N  I  F  *  F  R  E  R  R  S  N  Y  Y  F  S  F  I  G  I  E  I  S  L  N  L  L  *  S  I  Q  N  F  N  H  S  R  P  H  V  P  I  C  L  Q  A  Q  K  S  Q  L  C  Y  *  S  S  H  F  P  S  F  G  I  *  I  V  P  Q  G  W  I  N  Q  L  V  N  S  R  F  Y  N  L  V  Y  C  I  V  S  Q  I  D  L  L  A  M  S  V  H  I  H  S  R  H  *  *  N  E  F  N  K  D  H  P  E  A  I  D  I  A  F  T  S  Q  L  V  T  F  M  I  L  W  I  N  I  A  R  G  T  P  G  C  G  *  N  M  R  D  V  V  W  E  E  P  *  N  P  K  I  C  N  F  N  T  K  V  V  V  K  E  Y  V  I  S  L  D  I  T  V  Y  Y  I  R  S  M  Q  V  S  Q  C  T  S  S  F  </first_frame>
            <second_frame>  T  *  T  F  I  E  I  K  N  C  I  T  Y  T  H  S  T  *  L  K  K  L  L  T  V  V  H  F  A  V  S  Q  N  I  H  K  S  D  K  E  T  D  Y  R  N  L  N  Y  C  V  Q  V  L  S  E  Q  V  F  H  S  S  V  T  E  F  E  E  G  S  D  L  T  F  F  N  K  T  I  S  F  D  S  G  K  G  G  A  T  T  I  L  A  S  L  A  L  R  L  V  *  I  S  F  R  V  S  K  T  S  T  I  V  G  L  T  F  L  S  V  C  K  H  R  K  A  S  S  A  T  E  V  V  I  S  R  V  L  V  S  E  S  Y  P  R  D  G  S  I  S  L  L  T  A  D  F  T  I  L  F  I  A  *  L  A  K  L  I  S  W  L  C  L  F  I  S  T  A  G  I  D  E  M  S  S  T  R  T  T  P  K  L  *  T  S  L  L  L  V  S  W  *  H  S  *  Y  F  G  S  I  *  P  G  V  P  R  G  V  V  E  I  *  E  T  S  F  G  K  S  L  E  I  P  K  S  A  T  L  T  L  K  L  W  S  R  S  M  L  L  V  L  T  S  Q  C  I  T  S  E  A  C  R  *  A  N  A  P  A  V  S </second_frame>
            <third_frame>   L  K  L  L  *  K  L  K  I  A  S  L  T  L  I  V  H  S  S  R  N  F  S  Q  *  Y  I  L  Q  S  P  K  I  Y  I  K  V  T  K  K  R  I  T  E  I  L  T  T  V  Y  K  F  Y  Q  S  K  Y  S  I  H  Q  S  Q  N  L  K  K  A  V  I  *  L  S  S  T  K  Q  Y  L  L  I  Q  G  K  E  E  Q  L  L  F  *  L  H  W  H  *  D  *  S  E  S  P  L  E  Y  P  K  L  Q  P  *  *  A  S  R  S  Y  L  S  A  S  T  E  K  P  A  L  L  L  K  *  S  F  P  E  F  W  Y  L  N  R  T  P  G  M  D  Q  S  A  C  *  Q  Q  I  L  Q  S  C  L  L  H  S  *  P  N  *  S  L  G  Y  V  C  S  Y  P  Q  P  A  L  M  K  *  V  Q  Q  G  P  P  R  S  Y  R  H  R  F  Y  *  S  A  G  N  I  H  D  T  L  D  Q  Y  S  Q  G  Y  P  G  V  W  L  K  Y  E  R  R  R  L  G  R  A  L  K  S  Q  N  L  Q  L  *  H  *  S  C  G  Q  G  V  C  Y  *  S  *  H  H  S  V  L  H  Q  K  H  A  G  K  P  M  H  Q  Q  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97844" stop="97599"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKLLTVVHFAVSQNIHKSDKETDYRNLNYCVQVLSEQVFHSSVTEFEEGSDLTFFNKTISFDSGKGGATTILASLALRLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="98765" PGL_stop="99251"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98765" e_stop="99251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="98765" e_stop="99251" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98765" stop="99251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGGAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACTTTTCCAGCCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCTCATATAAAACACACTTTCCTAAACATTTTTGTTTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACTACAAAGCAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTGGAGCTTTTCGTCTAGTTGTTTGGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACTGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</gDNA_template>
            <first_frame> A  G  D  G  T  E  S  R  C  T  L  P  D  G  V  R  K  C  D  F  S  S  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  H  T  F  L  N  I  F  V  *  F  L  Q  L  D  K  N  F  S  R  T  L  A  K  A  T  T  K  Q  R  Q  N  Y  S  K  N  N  S  N  I  W  S  F  S  S  S  C  L  G  I  Y  S  L  V  L  K  L  *  T  I  P  E  S  I  K  E  L  V  C  C  V  K  S  L  G  C  P  G  G  I  A  *  W  V  D  C  F  L  L  R  L  V  K  Q  *  R  T  I  A  *  L  *  D  *  *  L  F  L  T  F  G  V  I  V  F  Y  F  C  F  *  R  L  V  K  T  I  E  </first_frame>
            <second_frame>  L  E  T  V  Q  K  V  G  A  H  F  P  M  A  S  E  S  V  T  F  P  A  N  G  K  E  V  *  E  S  D  L  L  I  *  N  T  L  S  *  T  F  L  F  S  F  C  N  L  I  K  T  F  Q  E  L  L  Q  R  L  L  Q  S  K  G  R  I  I  P  R  T  T  A  I  S  G  A  F  R  L  V  V  W  E  Y  I  L  L  F  L  N  C  K  P  F  L  N  L  *  R  N  W  C  V  V  L  K  V  *  V  V  Q  V  G  *  L  S  G  *  I  V  F  Y  L  G  L  L  S  N  R  G  L  L  L  N  C  K  I  D  N  S  F  L  R  L  V  *  S  C  F  T  F  A  F  E  D  *  *  K  R  L  K </second_frame>
            <third_frame>   W  R  R  Y  R  K  *  V  H  T  S  R  W  R  Q  K  V  *  L  F  Q  P  M  A  K  K  F  R  K  V  T  C  S  Y  K  T  H  F  P  K  H  F  C  L  V  F  A  T  *  *  K  L  F  K  N  S  C  K  G  Y  Y  K  A  K  A  E  L  F  Q  E  Q  Q  Q  Y  L  E  L  F  V  *  L  F  G  N  I  F  S  C  S  *  T  V  N  H  S  *  I  Y  K  G  I  G  V  L  C  *  K  S  R  L  S  R  W  D  S  L  V  G  R  L  F  S  T  *  A  C  *  A  I  E  D  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  L  L  L  L  L  K  I  S  E  N  D  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0028N03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="100152" PGL_stop="100939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100152" e_stop="100174"/>
            <exon e_start="100253" e_stop="100939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.769" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100152" e_stop="100174" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.769" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100175" i_stop="100252" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.939">
            <gDNA_exon_boundary e_start="100253" e_stop="100939" e_length="687"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100152" stop="100174"/>
              <exon start="100253" stop="100939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409531" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTTTTGGAACTGTTTACTATG : GAAAGCTTAAGGATGGAGGAGAGGTTGCTGTGAAGCGTCTTTACGAGCACAACTGCAAACGAATGCAACAGTTTGTAAATGAAATTGATATCCTTACTAGGCTAAGGCACAACAATCTTGTCACCCTCTATGGTTTCACTTCAAGGCGAAGCCGTGAACTACTCCTTGTCTATGAATACATTCCTAATGGAACTCTTGCTGATCACCTTCATGGTGACAGAGTGAAGGACGGATCACTTACCTGGCCGGTCCGCTTGAAAATTGCCATAGAAACTGCTGGTGCATTGGCTTACCTTCATGCTTCTGACATAATACACTGTGATGTCAAGACTAATAACATACTCCTTGATCAGAATTTCAGTGTTAAAGTTGCAGATTTTGGGATATCACAGCTCTTCTCAAATGATGTTTCTCATATTTCAACTGCAGCTCGGGGGACCCCTGGTTATATCGATCCAAAGTATCAAGAATGTTACCAGCTGACTAGTAAAAGTGATGTCTATAGCTTCGGGGTGGTCCTTGTTGAGCTCATTTCATCAATGCCATCTGTGGATATGAACAGGCATAGCCAAGAAATTAATTTGGCTAACTTTGCTATAAACAAGATCGCAACATGTGCATTTCACGAGTTGATCGATCCATCCCTGGGGTTCAATTCAGATACCAAGATTAGGGAAATGACAACCT</gDNA_template>
            <first_frame> R  F  W  N  C  L  L  W :   K  A  *  G  W  R  R  G  C  C  E  A  S  L  R  A  Q  L  Q  T  N  A  T  V  C  K  *  N  *  Y  P  Y  *  A  K  A  Q  Q  S  C  H  P  L  W  F  H  F  K  A  K  P  *  T  T  P  C  L  *  I  H  S  *  W  N  S  C  *  S  P  S  W  *  Q  S  E  G  R  I  T  Y  L  A  G  P  L  E  N  C  H  R  N  C  W  C  I  G  L  P  S  C  F  *  H  N  T  L  *  C  Q  D  *  *  H  T  P  *  S  E  F  Q  C  *  S  C  R  F  W  D  I  T  A  L  L  K  *  C  F  S  Y  F  N  C  S  S  G  D  P  W  L  Y  R  S  K  V  S  R  M  L  P  A  D  *  *  K  *  C  L  *  L  R  G  G  P  C  *  A  H  F  I  N  A  I  C  G  Y  E  Q  A  *  P  R  N  *  F  G  *  L  C  Y  K  Q  D  R  N  M  C  I  S  R  V  D  R  S  I  P  G  V  Q  F  R  Y  Q  D  *  G  N  D  N   </first_frame>
            <second_frame>  G  F  G  T  V  Y  Y   : G  K  L  K  D  G  G  E  V  A  V  K  R  L  Y  E  H  N  C  K  R  M  Q  Q  F  V  N  E  I  D  I  L  T  R  L  R  H  N  N  L  V  T  L  Y  G  F  T  S  R  R  S  R  E  L  L  L  V  Y  E  Y  I  P  N  G  T  L  A  D  H  L  H  G  D  R  V  K  D  G  S  L  T  W  P  V  R  L  K  I  A  I  E  T  A  G  A  L  A  Y  L  H  A  S  D  I  I  H  C  D  V  K  T  N  N  I  L  L  D  Q  N  F  S  V  K  V  A  D  F  G  I  S  Q  L  F  S  N  D  V  S  H  I  S  T  A  A  R  G  T  P  G  Y  I  D  P  K  Y  Q  E  C  Y  Q  L  T  S  K  S  D  V  Y  S  F  G  V  V  L  V  E  L  I  S  S  M  P  S  V  D  M  N  R  H  S  Q  E  I  N  L  A  N  F  A  I  N  K  I  A  T  C  A  F  H  E  L  I  D  P  S  L  G  F  N  S  D  T  K  I  R  E  M  T  T  </second_frame>
            <third_frame>   V  L  E  L  F  T  M  :  E  S  L  R  M  E  E  R  L  L  *  S  V  F  T  S  T  T  A  N  E  C  N  S  L  *  M  K  L  I  S  L  L  G  *  G  T  T  I  L  S  P  S  M  V  S  L  Q  G  E  A  V  N  Y  S  L  S  M  N  T  F  L  M  E  L  L  L  I  T  F  M  V  T  E  *  R  T  D  H  L  P  G  R  S  A  *  K  L  P  *  K  L  L  V  H  W  L  T  F  M  L  L  T  *  Y  T  V  M  S  R  L  I  T  Y  S  L  I  R  I  S  V  L  K  L  Q  I  L  G  Y  H  S  S  S  Q  M  M  F  L  I  F  Q  L  Q  L  G  G  P  L  V  I  S  I  Q  S  I  K  N  V  T  S  *  L  V  K  V  M  S  I  A  S  G  W  S  L  L  S  S  F  H  Q  C  H  L  W  I  *  T  G  I  A  K  K  L  I  W  L  T  L  L  *  T  R  S  Q  H  V  H  F  T  S  *  S  I  H  P  W  G  S  I  Q  I  P  R  L  G  K  *  Q  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100153" stop="100174"/>
                    <exon start="100253" stop="100938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFGTVYYGKLKDGGEVAVKRLYEHNCKRMQQFVNEIDILTRLRHNNLVTLYGFTSRRSRELLLVYEYIPNGTLADHLHGDRVKDGSLTWPVRLKIAIETAGALAYLHASDIIHCDVKTNNILLDQNFSVKVADFGISQLFSNDVSHISTAARGTPGYIDPKYQECYQLTSKSDVYSFGVVLVELISSMPSVDMNRHSQEINLANFAINKIATCAFHELIDPSLGFNSDTKIREMTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="108975" PGL_stop="109533"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108975" e_stop="109533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108975" e_stop="109533" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108975" stop="109533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212217" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCCTTGTTGAGCTGTTATCATCCATGCCTGCAGTAGACTTCAGTAGACATAACGAAGAGATCAACTTATCTAACTATGCAATAAACAGGATTTTAAGGTGTGCATTTGATGAGTTGATAGACCCATCCCTCGGTTTTCAGTCTGATGGAGAAGTTAGGAGGATGACTATTTCAGTAGCCGAGATATCGTTTAGATGCTTGCAACATGACAAGGACATGAGACCTAGTATGGTTGAAGTACTAGAAACATTGCAAGAAATTCAGCATGGTGAGTATATACATGATAAGAAAATCGATTGTGACGGAAACACGAAAGAGAGTGTACAAGTCCCTCTTTCACCTGAATCAGAAGTAGATGTATTATTGAAGAAACTCAACAACAAGTTTCCAACTTCACCAATTTCAGTAACTCAAGTGTGGATTAGTGACTCTAGCACAAGTATCACAAGTACATAATATTCATCTTTTTTTGGTTTCACAGTTCATGTAGATAAACAAAAATACACAGAAAACTGAGCCAAGTCATAACATTAACTGAATATTATTGGGTACTTGTTT</gDNA_template>
            <first_frame> C  P  C  *  A  V  I  I  H  A  C  S  R  L  Q  *  T  *  R  R  D  Q  L  I  *  L  C  N  K  Q  D  F  K  V  C  I  *  *  V  D  R  P  I  P  R  F  S  V  *  W  R  S  *  E  D  D  Y  F  S  S  R  D  I  V  *  M  L  A  T  *  Q  G  H  E  T  *  Y  G  *  S  T  R  N  I  A  R  N  S  A  W  *  V  Y  T  *  *  E  N  R  L  *  R  K  H  E  R  E  C  T  S  P  S  F  T  *  I  R  S  R  C  I  I  E  E  T  Q  Q  Q  V  S  N  F  T  N  F  S  N  S  S  V  D  *  *  L  *  H  K  Y  H  K  Y  I  I  F  I  F  F  W  F  H  S  S  C  R  *  T  K  I  H  R  K  L  S  Q  V  I  T  L  T  E  Y  Y  W  V  L  V  </first_frame>
            <second_frame>  V  L  V  E  L  L  S  S  M  P  A  V  D  F  S  R  H  N  E  E  I  N  L  S  N  Y  A  I  N  R  I  L  R  C  A  F  D  E  L  I  D  P  S  L  G  F  Q  S  D  G  E  V  R  R  M  T  I  S  V  A  E  I  S  F  R  C  L  Q  H  D  K  D  M  R  P  S  M  V  E  V  L  E  T  L  Q  E  I  Q  H  G  E  Y  I  H  D  K  K  I  D  C  D  G  N  T  K  E  S  V  Q  V  P  L  S  P  E  S  E  V  D  V  L  L  K  K  L  N  N  K  F  P  T  S  P  I  S  V  T  Q  V  W  I  S  D  S  S  T  S  I  T  S  T  *  Y  S  S  F  F  G  F  T  V  H  V  D  K  Q  K  Y  T  E  N  *  A  K  S  *  H  *  L  N  I  I  G  Y  L  F </second_frame>
            <third_frame>   S  L  L  S  C  Y  H  P  C  L  Q  *  T  S  V  D  I  T  K  R  S  T  Y  L  T  M  Q  *  T  G  F  *  G  V  H  L  M  S  *  *  T  H  P  S  V  F  S  L  M  E  K  L  G  G  *  L  F  Q  *  P  R  Y  R  L  D  A  C  N  M  T  R  T  *  D  L  V  W  L  K  Y  *  K  H  C  K  K  F  S  M  V  S  I  Y  M  I  R  K  S  I  V  T  E  T  R  K  R  V  Y  K  S  L  F  H  L  N  Q  K  *  M  Y  Y  *  R  N  S  T  T  S  F  Q  L  H  Q  F  Q  *  L  K  C  G  L  V  T  L  A  Q  V  S  Q  V  H  N  I  H  L  F  L  V  S  Q  F  M  *  I  N  K  N  T  Q  K  T  E  P  S  H  N  I  N  *  I  L  L  G  T  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108976" stop="109431"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLVELLSSMPAVDFSRHNEEINLSNYAINRILRCAFDELIDPSLGFQSDGEVRRMTISVAEISFRCLQHDKDMRPSMVEVLETLQEIQHGEYIHDKKIDCDGNTKESVQVPLSPESEVDVLLKKLNNKFPTSPISVTQVWISDSSTSITST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="113021" PGL_stop="114612"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113021" e_stop="114612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="113021" e_stop="114612" e_length="1592"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113021" stop="113603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113504" stop="114002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113506" stop="114261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113880" stop="114612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434063" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTCCCTCCGTTTCAATTTGTTTATCTAGTTTTGACTAGGCACGGAGTTTAGAAAGTAAAAAAAGACTTTCGAATCTCGTGGTGTTAGAATGTACCAAATGTTCTTTGATCTTGTGGTCTTAAACATATCATGTGAAACGGACTAAAAAGGGAAAGATGCATTCTTTCTGAAACGGACTAAAAAGGGAAGTAAGTCGAACAAATTGAAACGAGGGAGTAATAATCTAAAGACAATCCACAAAAGTCTGTTCTGTTTGTTTTGATTTTCGAGGGGAAATTTACGTAGTAAGCATCTTGATCTAACAGCTATTTCTGTATGTTCTAAAATCAGGAAAACTTAAAGATGGAAAAGAAGTTGCAGTTAAGAGTCTTTATGAGAACAATCACAGGCAAATGCAGCAGTTTATCAACGAAATTGAAATTCTCACTCGCCTTAGGCATCCGAATCTTGTAACCCTTTATGGATGTACATCAAGACGTAGCCGTGAACTCTTCCTTGTTTATGAGTACATTCCTAATGGAACAATTGCTGATCACCTGTACGGACATAGAGCGAAGGATAAGTTACTAACATGGTCTATAAGGCTCAAAATCGCCATTGAAACTGCTAGCGCTTTGGCTTACCTTCATGCTTCTGACATCATACACCGTGATGTCAAAACAAATAACATTCTCCTGGACAATAAGTTTTGTGTCAAAGTAGCAGATTTCGGGCTGTCAAAATCCTTCCCTAACGATGTCACTCATATCTCAACCGCACCTCAGGGGACCCCGGGATATGTTGATCCTCAGTATCACGAATGTTACCAGCTTACTGATAAGAGTGATGTTTATAGCTTTGGGGTTGTCCTTGTTGAGCTCCTATCATCAAAGCGAGCTGTAGATATGAACAGACATATGCACGAGATTAATTTGGCAAACTACGCGATGAACAGGATACTAAAATCTGCATTTGATGAGGTGATTGATCCATCACTTGGATTCGAGACAGATGCTGAAGTCAGGAGGATGACAATATCAGTAGCAGAACTAGCTTTCCAGTGCTTGCAAGTTGTCAAGGACATGAGACCTACAATGGAAGAAGTACACGAAACGTTGAAGCTTATCAAATACAGTGAATGGAAAAATTATCAGAAAAAGGATATCAATAGCTGCAATACCAAGACAACAACTGTAAAAGTTCATCGTTATCCTTCTGAAACGGATGATGCTGTGTTATTGAAGAAAAACACTCCAGCTTCACCTGATACTGTGATTGATACATGGGCTAGCAGTTCCACTACAACTAGTACTGGAGGGTGATGTTTCATAAACTCATTTTCCCCCTTCATTTTAAATACATATCATGATGTCATTTTTATAGAGTTTTTTCAGCTTGTTTCAGCCTGTTCAGGAATATAGTAAATGAAGCTTTCTTAAAGTGTTAGTTATAGTCACATATGTATATGATTCCCCTTTAGACTATGTTGCTCGGATTCCCCTAAAGTGTTGCTGCACGTGTGTCTGATCCTCCAAAAATGCACTACTTTTGGAGGATCCGTACACACCTGTGAGCATTTTTGAAAATTTTCTCTATGGGTTATCCTGGCTT</gDNA_template>
            <first_frame> Y  S  L  R  F  N  L  F  I  *  F  *  L  G  T  E  F  R  K  *  K  K  T  F  E  S  R  G  V  R  M  Y  Q  M  F  F  D  L  V  V  L  N  I  S  C  E  T  D  *  K  G  K  D  A  F  F  L  K  R  T  K  K  G  S  K  S  N  K  L  K  R  G  S  N  N  L  K  T  I  H  K  S  L  F  C  L  F  *  F  S  R  G  N  L  R  S  K  H  L  D  L  T  A  I  S  V  C  S  K  I  R  K  T  *  R  W  K  R  S  C  S  *  E  S  L  *  E  Q  S  Q  A  N  A  A  V  Y  Q  R  N  *  N  S  H  S  P  *  A  S  E  S  C  N  P  L  W  M  Y  I  K  T  *  P  *  T  L  P  C  L  *  V  H  S  *  W  N  N  C  *  S  P  V  R  T  *  S  E  G  *  V  T  N  M  V  Y  K  A  Q  N  R  H  *  N  C  *  R  F  G  L  P  S  C  F  *  H  H  T  P  *  C  Q  N  K  *  H  S  P  G  Q  *  V  L  C  Q  S  S  R  F  R  A  V  K  I  L  P  *  R  C  H  S  Y  L  N  R  T  S  G  D  P  G  I  C  *  S  S  V  S  R  M  L  P  A  Y  *  *  E  *  C  L  *  L  W  G  C  P  C  *  A  P  I  I  K  A  S  C  R  Y  E  Q  T  Y  A  R  D  *  F  G  K  L  R  D  E  Q  D  T  K  I  C  I  *  *  G  D  *  S  I  T  W  I  R  D  R  C  *  S  Q  E  D  D  N  I  S  S  R  T  S  F  P  V  L  A  S  C  Q  G  H  E  T  Y  N  G  R  S  T  R  N  V  E  A  Y  Q  I  Q  *  M  E  K  L  S  E  K  G  Y  Q  *  L  Q  Y  Q  D  N  N  C  K  S  S  S  L  S  F  *  N  G  *  C  C  V  I  E  E  K  H  S  S  F  T  *  Y  C  D  *  Y  M  G  *  Q  F  H  Y  N  *  Y  W  R  V  M  F  H  K  L  I  F  P  L  H  F  K  Y  I  S  *  C  H  F  Y  R  V  F  S  A  C  F  S  L  F  R  N  I  V  N  E  A  F  L  K  C  *  L  *  S  H  M  Y  M  I  P  L  *  T  M  L  L  G  F  P  *  S  V  A  A  R  V  S  D  P  P  K  M  H  Y  F  W  R  I  R  T  H  L  *  A  F  L  K  I  F  S  M  G  Y  P  G   </first_frame>
            <second_frame>  I  P  S  V  S  I  C  L  S  S  F  D  *  A  R  S  L  E  S  K  K  R  L  S  N  L  V  V  L  E  C  T  K  C  S  L  I  L  W  S  *  T  Y  H  V  K  R  T  K  K  G  K  M  H  S  F  *  N  G  L  K  R  E  V  S  R  T  N  *  N  E  G  V  I  I  *  R  Q  S  T  K  V  C  S  V  C  F  D  F  R  G  E  I  Y  V  V  S  I  L  I  *  Q  L  F  L  Y  V  L  K  S  G  K  L  K  D  G  K  E  V  A  V  K  S  L  Y  E  N  N  H  R  Q  M  Q  Q  F  I  N  E  I  E  I  L  T  R  L  R  H  P  N  L  V  T  L  Y  G  C  T  S  R  R  S  R  E  L  F  L  V  Y  E  Y  I  P  N  G  T  I  A  D  H  L  Y  G  H  R  A  K  D  K  L  L  T  W  S  I  R  L  K  I  A  I  E  T  A  S  A  L  A  Y  L  H  A  S  D  I  I  H  R  D  V  K  T  N  N  I  L  L  D  N  K  F  C  V  K  V  A  D  F  G  L  S  K  S  F  P  N  D  V  T  H  I  S  T  A  P  Q  G  T  P  G  Y  V  D  P  Q  Y  H  E  C  Y  Q  L  T  D  K  S  D  V  Y  S  F  G  V  V  L  V  E  L  L  S  S  K  R  A  V  D  M  N  R  H  M  H  E  I  N  L  A  N  Y  A  M  N  R  I  L  K  S  A  F  D  E  V  I  D  P  S  L  G  F  E  T  D  A  E  V  R  R  M  T  I  S  V  A  E  L  A  F  Q  C  L  Q  V  V  K  D  M  R  P  T  M  E  E  V  H  E  T  L  K  L  I  K  Y  S  E  W  K  N  Y  Q  K  K  D  I  N  S  C  N  T  K  T  T  T  V  K  V  H  R  Y  P  S  E  T  D  D  A  V  L  L  K  K  N  T  P  A  S  P  D  T  V  I  D  T  W  A  S  S  S  T  T  T  S  T  G  G  *  C  F  I  N  S  F  S  P  F  I  L  N  T  Y  H  D  V  I  F  I  E  F  F  Q  L  V  S  A  C  S  G  I  *  *  M  K  L  S  *  S  V  S  Y  S  H  I  C  I  *  F  P  F  R  L  C  C  S  D  S  P  K  V  L  L  H  V  C  L  I  L  Q  K  C  T  T  F  G  G  S  V  H  T  C  E  H  F  *  K  F  S  L  W  V  I  L  A  </second_frame>
            <third_frame>   F  P  P  F  Q  F  V  Y  L  V  L  T  R  H  G  V  *  K  V  K  K  D  F  R  I  S  W  C  *  N  V  P  N  V  L  *  S  C  G  L  K  H  I  M  *  N  G  L  K  R  E  R  C  I  L  S  E  T  D  *  K  G  K  *  V  E  Q  I  E  T  R  E  *  *  S  K  D  N  P  Q  K  S  V  L  F  V  L  I  F  E  G  K  F  T  *  *  A  S  *  S  N  S  Y  F  C  M  F  *  N  Q  E  N  L  K  M  E  K  K  L  Q  L  R  V  F  M  R  T  I  T  G  K  C  S  S  L  S  T  K  L  K  F  S  L  A  L  G  I  R  I  L  *  P  F  M  D  V  H  Q  D  V  A  V  N  S  S  L  F  M  S  T  F  L  M  E  Q  L  L  I  T  C  T  D  I  E  R  R  I  S  Y  *  H  G  L  *  G  S  K  S  P  L  K  L  L  A  L  W  L  T  F  M  L  L  T  S  Y  T  V  M  S  K  Q  I  T  F  S  W  T  I  S  F  V  S  K  *  Q  I  S  G  C  Q  N  P  S  L  T  M  S  L  I  S  Q  P  H  L  R  G  P  R  D  M  L  I  L  S  I  T  N  V  T  S  L  L  I  R  V  M  F  I  A  L  G  L  S  L  L  S  S  Y  H  Q  S  E  L  *  I  *  T  D  I  C  T  R  L  I  W  Q  T  T  R  *  T  G  Y  *  N  L  H  L  M  R  *  L  I  H  H  L  D  S  R  Q  M  L  K  S  G  G  *  Q  Y  Q  *  Q  N  *  L  S  S  A  C  K  L  S  R  T  *  D  L  Q  W  K  K  Y  T  K  R  *  S  L  S  N  T  V  N  G  K  I  I  R  K  R  I  S  I  A  A  I  P  R  Q  Q  L  *  K  F  I  V  I  L  L  K  R  M  M  L  C  Y  *  R  K  T  L  Q  L  H  L  I  L  *  L  I  H  G  L  A  V  P  L  Q  L  V  L  E  G  D  V  S  *  T  H  F  P  P  S  F  *  I  H  I  M  M  S  F  L  *  S  F  F  S  L  F  Q  P  V  Q  E  Y  S  K  *  S  F  L  K  V  L  V  I  V  T  Y  V  Y  D  S  P  L  D  Y  V  A  R  I  P  L  K  C  C  C  T  C  V  *  S  S  K  N  A  L  L  L  E  D  P  Y  T  P  V  S  I  F  E  N  F  L  Y  G  L  S  W  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113325" stop="114323"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLFLYVLKSGKLKDGKEVAVKSLYENNHRQMQQFINEIEILTRLRHPNLVTLYGCTSRRSRELFLVYEYIPNGTIADHLYGHRAKDKLLTWSIRLKIAIETASALAYLHASDIIHRDVKTNNILLDNKFCVKVADFGLSKSFPNDVTHISTAPQGTPGYVDPQYHECYQLTDKSDVYSFGVVLVELLSSKRAVDMNRHMHEINLANYAMNRILKSAFDEVIDPSLGFETDAEVRRMTISVAELAFQCLQVVKDMRPTMEEVHETLKLIKYSEWKNYQKKDINSCNTKTTTVKVHRYPSETDDAVLLKKNTPASPDTVIDTWASSSTTTSTGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="121468" PGL_stop="114977"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121468" e_stop="121190"/>
            <exon e_start="120683" e_stop="120588"/>
            <exon e_start="119205" e_stop="119099"/>
            <exon e_start="118639" e_stop="118591"/>
            <exon e_start="118415" e_stop="118303"/>
            <exon e_start="116385" e_stop="116291"/>
            <exon e_start="116049" e_stop="115961"/>
            <exon e_start="115867" e_stop="115773"/>
            <exon e_start="115691" e_stop="115149"/>
            <exon e_start="114987" e_stop="114977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.819" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.233" acc_prob="0.948" e_score="1.000"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121468" e_stop="121190" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="121189" i_stop="120684" i_length="506"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120683" e_stop="120588" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.939">
            <gDNA_intron_boundary i_start="120587" i_stop="119206" i_length="1382"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119205" e_stop="119099" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="119098" i_stop="118640" i_length="459"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118639" e_stop="118591" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.859">
            <gDNA_intron_boundary i_start="118590" i_stop="118416" i_length="175"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118415" e_stop="118303" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.931" acc_prob="0.981">
            <gDNA_intron_boundary i_start="118302" i_stop="116386" i_length="1917"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="116385" e_stop="116291" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116290" i_stop="116050" i_length="241"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="116049" e_stop="115961" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.972" acc_prob="0.895">
            <gDNA_intron_boundary i_start="115960" i_stop="115868" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="115867" e_stop="115773" e_length="95"/>
          </exon>
          <intron i_serial="8" don_prob="0.819" acc_prob="0.962">
            <gDNA_intron_boundary i_start="115772" i_stop="115692" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="115691" e_stop="115149" e_length="543"/>
          </exon>
          <intron i_serial="9" don_prob="0.233" acc_prob="0.948">
            <gDNA_intron_boundary i_start="115148" i_stop="114988" i_length="161"/>
          </intron>
          <exon e_serial="10" e_score="0.545">
            <gDNA_exon_boundary e_start="114987" e_stop="114977" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121468" stop="121190"/>
              <exon start="120683" stop="120588"/>
              <exon start="119205" stop="119099"/>
              <exon start="118639" stop="118591"/>
              <exon start="118415" stop="118303"/>
              <exon start="116385" stop="116291"/>
              <exon start="116049" stop="115973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121464" stop="121190"/>
              <exon start="120683" stop="120588"/>
              <exon start="119205" stop="119099"/>
              <exon start="118639" stop="118591"/>
              <exon start="118415" stop="118303"/>
              <exon start="116385" stop="116291"/>
              <exon start="116049" stop="115961"/>
              <exon start="115867" stop="115773"/>
              <exon start="115691" stop="115149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121457" stop="121190"/>
              <exon start="120683" stop="120588"/>
              <exon start="119205" stop="119099"/>
              <exon start="118639" stop="118591"/>
              <exon start="118415" stop="118303"/>
              <exon start="116385" stop="116291"/>
              <exon start="116049" stop="116025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121449" stop="121190"/>
              <exon start="120683" stop="120588"/>
              <exon start="119205" stop="119099"/>
              <exon start="118639" stop="118591"/>
              <exon start="118415" stop="118303"/>
              <exon start="116385" stop="116315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121448" stop="121190"/>
              <exon start="120683" stop="120588"/>
              <exon start="119205" stop="119099"/>
              <exon start="118639" stop="118591"/>
              <exon start="118415" stop="118303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115664" stop="115149"/>
              <exon start="114987" stop="114977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115640" stop="115149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115489" stop="115149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCCTAACTCGTCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG : GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG : GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG : GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG : TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG : ACACAGGGAATGAGGGAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCGCGGATTGTACAG : TGGCCTCTTGCCGTCATTGGCTGGGATTAGTCATGTTGCTATCCAATTTCCAGCATATGAAAAGCTGAAATCGTACTTGGCAAAAAGGG : CCAATAAGCATACCAATGAACTAAACTCTGGTGAAGTAGCAATTGCCTCTTCGATGGCAAAAATACTTGCCTCTGTAATGACTTATCCACATGAG : GTCGTTCGTTCTAAACTTCAAGAACAAGGGCAAGTAAGAAACTCAGAGAAAGCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA : ACAATTAATTA</gDNA_template>
            <first_frame> P  L  T  R  P  R  R  Q  W  T  G  H  S  S  *  K  P  K  R  V  F  V  Y  D  E  T  P  P  G  F  L  L  N  L  Q  R  V  L  *  I  L  E  K  R  V  I  F  S  V  F  F  Q  Y  F  C  C  C  L  G  C  *  G  K  V  F  R  Q  E  *  P  P  P  A  P  A  T  L  R  V  L  E  V  S  Y  V  K  L  V  L  V  L  L  Q  :  V  P  L  L  L  H  L  C  V  H  W  M  L  L  R  Q  D  C  K  Y  M  V  C  L  R  F  L  N  L  L  V  K  :  V  V  S  L  S  Q  A  Y  R  I  Y  *  E  Q  K  V  S  G  D  F  I  E  A  F  H  Q  H  *  Q  L  F  F  R  T  G  R :   C  T  S  Q  F  M  N  I  S  R  I  R  C  I  H  M  :  W  I  A  V  G  S  L  R  L  V  Q  T  C  L  Q  L  R  G  R  G  L  Q  H  P  L  Q  Q  I  H  C  G  L  L  R  P  G  S  * :   H  R  E  *  G  R  V  *  F  L  I  K  V  Y  C  L  L  *  Y  E  *  H  M  K  K  G  S  A  D  C  T   : V  A  S  C  R  H  W  L  G  L  V  M  L  L  S  N  F  Q  H  M  K  S  *  N  R  T  W  Q  K  G  :  P  I  S  I  P  M  N  *  T  L  V  K  *  Q  L  P  L  R  W  Q  K  Y  L  P  L  *  *  L  I  H  M  R :   S  F  V  L  N  F  K  N  K  G  K  *  E  T  Q  R  K  H  I  M  G  L  S  I  V  *  K  R  C  S  N  R  N  V  *  L  H  S  T  G  V  V  E  P  I  F  *  G  P  H  P  L  L  L  L  H  L  P  V  M  K  *  S  T  K  Y  F  N  E  L  Y  F  Q  K  R  I  Q  N  Q  I  L  D  V  N  P  I  R  *  P  K  N  M  E  T  M  M  K  N  Y  N  N  Q  K  A  H  Q  I  R  E  L  L  *  F  H  *  V  T  L  I  I  *  L  L  D  I  D  *  R  C  F  S  F  S  F  F  F  F  L  S  W  K  Q  F  A  T  S  V  C  C  C  T  I  F  F  I  L  Y  L  T  I  L  G  E  E  S  F  I  F  R  S  N  K  E  G  R  G  *  F  P  S  E :   Q  L  I  </first_frame>
            <second_frame>  P  *  L  V  Q  D  V  S  G  P  V  I  L  L  E  N  P  K  G  Y  L  Y  M  M  K  P  H  L  G  F  C  *  I  F  K  G  F  F  K  F  L  K  K  E  *  F  F  Q  F  F  F  N  I  F  A  V  V  W  V  V  E  V  K  F  S  G  K  N  D  H  R  R  R  R  R  P  *  E  C  *  R  Y  H  M  *  S  W  C  W  C  F  C  R :   C  H  C  C  Y  I  Y  V  S  I  G  C  Y  *  D  K  T  A  S  T  W  S  A  S  G  F  S  I  C  S  S  R :   *  C  H  C  H  K  L  T  E  Y  T  K  N  R  R  F  Q  G  T  L  S  R  P  F  T  N  I  D  S  S  S  S  E  L  G   : G  V  L  H  S  L  *  T  S  Q  G  F  V  A  F  T  C :   G  *  Q  W  A  A  Y  D  W  C  K  H  A  C  S  C  G  G  G  G  C  N  I  H  Y  N  K  S  I  V  G  C  *  D  P  A  H   : D  T  G  N  E  G  G  C  S  S  L  *  R  Y  I  V  C  F  N  T  N  N  T  *  R  R  D  P  R  I  V  Q  :  W  P  L  A  V  I  G  W  D  *  S  C  C  Y  P  I  S  S  I  *  K  A  E  I  V  L  G  K  K  G :   Q  *  A  Y  Q  *  T  K  L  W  *  S  S  N  C  L  F  D  G  K  N  T  C  L  C  N  D  L  S  T  *   : G  R  S  F  *  T  S  R  T  R  A  S  K  K  L  R  E  S  I  *  W  G  C  R  L  C  K  K  D  V  Q  T  G  T  S  D  C  I  L  P  G  L  W  N  Q  S  S  K  D  H  T  L  C  C  Y  Y  I  Y  Q  L  *  N  D  P  Q  N  T  S  T  S  Y  T  S  R  K  G  F  R  T  K  S  *  T  *  I  P  *  G  S  R  R  T  W  R  Q  *  *  K  I  T  T  I  R  K  H  I  K  *  E  N  S  F  N  S  I  E  *  L  *  *  S  N  C  *  T  L  I  R  D  V  S  L  F  L  F  F  F  F  C  R  G  S  N  L  Q  Q  V  F  A  V  A  Q  F  F  L  F  C  I  L  L  F  W  V  K  K  V  L  Y  F  D  L  I  K  K  G  A  D  S  F  P  L   : N  N  *  L </second_frame>
            <third_frame>   P  N  S  S  K  T  S  V  D  R  S  F  F  L  K  T  Q  K  G  I  C  I  *  *  N  P  T  W  V  F  A  K  S  S  K  G  S  L  N  S  *  K  K  S  D  F  F  S  F  F  S  I  F  L  L  L  F  G  L  L  R  *  S  F  P  A  R  M  T  T  A  G  A  G  D  L  K  S  V  R  G  I  I  C  E  V  G  A  G  A  S  A   : G  A  I  A  A  T  F  M  C  P  L  D  V  I  K  T  R  L  Q  V  H  G  L  P  Q  V  S  Q  S  A  R  Q   : G  S  V  I  V  T  S  L  Q  N  I  L  R  T  E  G  F  R  G  L  Y  R  G  L  S  P  T  L  T  A  L  L  P  N  W  A  :  V  Y  F  T  V  Y  E  H  L  K  D  S  L  H  S  H   : V  D  S  S  G  Q  L  T  I  G  A  N  M  L  A  A  A  G  A  G  A  A  T  S  I  T  T  N  P  L  W  V  V  K  T  R  L  M  :  T  Q  G  M  R  E  G  V  V  P  Y  K  G  I  L  S  A  L  I  R  I  T  H  E  E  G  I  R  G  L  Y  S :   G  L  L  P  S  L  A  G  I  S  H  V  A  I  Q  F  P  A  Y  E  K  L  K  S  Y  L  A  K  R   : A  N  K  H  T  N  E  L  N  S  G  E  V  A  I  A  S  S  M  A  K  I  L  A  S  V  M  T  Y  P  H  E  :  V  V  R  S  K  L  Q  E  Q  G  Q  V  R  N  S  E  K  A  Y  N  G  V  V  D  C  V  K  K  M  F  K  Q  E  R  L  T  A  F  Y  R  G  C  G  T  N  L  L  R  T  T  P  S  A  V  I  T  F  T  S  Y  E  M  I  H  K  I  L  Q  R  A  I  L  P  E  K  D  S  E  P  N  P  R  R  K  S  H  K  V  A  E  E  H  G  D  N  D  E  K  L  Q  Q  S  E  S  T  S  N  K  R  T  P  L  I  P  L  S  N  S  D  N  L  T  A  R  H  *  L  E  M  F  L  F  F  F  F  F  F  F  V  V  E  A  I  C  N  K  C  L  L  L  H  N  F  F  Y  F  V  S  Y  Y  F  G  *  R  K  F  Y  I  S  I  *  *  R  R  A  R  I  V  S  L  *  :  T  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121280" stop="121190"/>
                    <exon start="120683" stop="120588"/>
                    <exon start="119205" stop="119099"/>
                    <exon start="118639" stop="118591"/>
                    <exon start="118415" stop="118303"/>
                    <exon start="116385" stop="116291"/>
                    <exon start="116049" stop="115961"/>
                    <exon start="115867" stop="115773"/>
                    <exon start="115691" stop="115314"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFPARMTTAGAGDLKSVRGIICEVGAGASAGAIAATFMCPLDVIKTRLQVHGLPQVSQSARQGSVIVTSLQNILRTEGFRGLYRGLSPTLTALLPNWAVYFTVYEHLKDSLHSHVDSSGQLTIGANMLAAAGAGAATSITTNPLWVVKTRLMTQGMREGVVPYKGILSALIRITHEEGIRGLYSGLLPSLAGISHVAIQFPAYEKLKSYLAKRANKHTNELNSGEVAIASSMAKILASVMTYPHEVVRSKLQEQGQVRNSEKAYNGVVDCVKKMFKQERLTAFYRGCGTNLLRTTPSAVITFTSYEMIHKILQRAILPEKDSEPNPRRKSHKVAEEHGDNDEKLQQSESTSNKRTPLIPLSNSDNLTARH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="131036" PGL_stop="122555"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131036" e_stop="130783"/>
            <exon e_start="128778" e_stop="128649"/>
            <exon e_start="128533" e_stop="128422"/>
            <exon e_start="126267" e_stop="126192"/>
            <exon e_start="126074" e_stop="125986"/>
            <exon e_start="125403" e_stop="125317"/>
            <exon e_start="124594" e_stop="124478"/>
            <exon e_start="124371" e_stop="124264"/>
            <exon e_start="124161" e_stop="124108"/>
            <exon e_start="123969" e_stop="123817"/>
            <exon e_start="123583" e_stop="123055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.557" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.475" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.987"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131036" e_stop="130783" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.557">
            <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128778" e_stop="128649" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128533" e_stop="128422" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.874">
            <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126267" e_stop="126192" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.475" acc_prob="0.988">
            <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="126074" e_stop="125986" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.981">
            <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="125403" e_stop="125317" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.857">
            <gDNA_intron_boundary i_start="125316" i_stop="124595" i_length="722"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124594" e_stop="124478" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124477" i_stop="124372" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="124371" e_stop="124264" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.993">
            <gDNA_intron_boundary i_start="124263" i_stop="124162" i_length="102"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="124161" e_stop="124108" e_length="54"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="124107" i_stop="123970" i_length="138"/>
          </intron>
          <exon e_serial="10" e_score="0.987">
            <gDNA_exon_boundary e_start="123969" e_stop="123817" e_length="153"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233"/>
          </intron>
          <exon e_serial="11" e_score="0.979">
            <gDNA_exon_boundary e_start="123583" e_stop="123055" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131036" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279270" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131036" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279260" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131017" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131015" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131014" stop="130783"/>
              <exon start="128778" stop="128669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131013" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131012" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131010" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131003" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131000" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130998" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130994" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130987" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130981" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130956" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130956" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130834" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128508" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126062" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124322" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123817"/>
              <exon start="123583" stop="123434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123884" stop="123817"/>
              <exon start="123583" stop="123055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123401" stop="123113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349505" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTCAGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG : GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG : ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG : TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG : GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG : ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG : GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG : TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG : GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG : GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT : AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTGTAACCAGATGTTGTTGTGGTTGCTACATTGTCTCTATCTT</gDNA_template>
            <first_frame> K  F  S  L  L  Q  L  T  F  F  I  N  G  G  F  F  F  F  F  T  I  H  C  N  S  F  *  P  I  S  F  Q  K  S  T  Q  T  R  H  *  M  G  Y  Y  S  L  F  R  F  F  T  Q  Q  K  L  Q  H  Y  S  S  S  R  R  W  Y  W  T  *  S  N  F  C  C  Q  K  C  P  P  T  C  L  L  H  *  R :   I  *  S  C  I  R  G  D  A  N  G  R  G  C  I  G  C  C  R  G  T  I  A  *  *  D  S  *  F  C  K  E  I  *  C  Y  S  S  W  S  N  W  R  :  I  *  M  G  Q  K  *  K  T  F  E  A  R  D  W  I  A  S  T  S  R  R  F  A  G  L  C  *  L  E  T  S  H  C  F  T  T   : V  S  R  C  F  N  F  E  E  R  S  C  *  R  C  R  P  N  G  C  *  G  T  Y  W  R :   Y  L  F  W  Q  T  K  R  I  Q  H  *  *  K  W  S  G  N  R  F  Q  H  *  S  V  C  S  I  *   : D  R  K  N  C  S  Y  C  I  *  N  C  K  E  A  K  R  K  T  M  *  R  G  *  S  K  C  I  G   : G  L  Y  A  L  E  E  D  S  Y  S  V  S  L  R  V  S  *  C  R  A  L  S  H  V  C  *  *  C  S  H  A  T  C  S  Q  P  K  T   : V  *  Y  N  C  D  K  Q  H  I  W  *  H  P  V  R  *  S  I  N  D  Y  R  K  Y  R  D  A  S  I  C  Q  S  W  C  S   : G  T  W  I  I  *  T  Y  T  W  F  C  S  *  Y  C  W  A   : G  *  S  K  P  F  G  N  N  A  Q  C  C  Y  A  S  E  V  W  P  R  *  G  E  G  C  S  E  N  *  S  S  C  F  R  H  L  K  S  R  I  P  Y  W  *  H  S  L  S  R  T   : *  I  G  R  M  Q  G  N  G  *  R  S  A  Q  V  Y  R  Q  Q  N  S  C  C  C  L  I  F  L  R  G  G  F  I  E  T  S  T  N  D  H  F  G  R  C  I  C  S  Q  Y  I  I  C  H  L  C  N  C  L  K  D  S  K  L  L  S  V  V  S  *  P  K  R  L  D  S  F  L  *  C  F  *  D  I  I  L  L  *  H  E  V  N  L  G  A  T  V  K  L  F  *  R  V  Q  V  M  E  S  T  G  V  A  C  I  R  I  D  C  L  L  Y  F  S  L  D  P  M  *  T  R  N  A  L  C  I  G  L  S  F  L  F  C  C  N  M  E  K  A  M  K  I  S  I  F  A  P  W  E  N  W  N  G  T  I  V  T  R  C  C  C  G  C  Y  I  V  S  I   </first_frame>
            <second_frame>  N  S  V  C  F  S  S  H  S  S  S  M  A  A  S  S  S  S  L  Q  F  T  A  T  P  F  N  Q  F  H  S  K  K  V  P  K  H  A  T  K  W  G  T  I  R  C  S  A  S  S  P  S  K  S  Y  N  I  T  L  L  P  G  D  G  I  G  P  E  V  I  S  V  A  K  N  A  L  Q  L  V  S  S  I  E   : G  F  E  V  A  F  E  E  M  P  M  G  G  A  A  L  D  A  V  G  V  P  L  P  D  E  T  L  N  S  A  K  K  S  D  A  T  L  L  G  A  I  G  G :   Y  K  W  D  K  N  E  K  H  L  K  P  E  T  G  L  L  Q  L  R  E  G  L  Q  V  F  A  N  L  R  P  A  T  V  L  P  Q  :  L  V  D  A  S  T  L  K  K  E  V  A  E  G  V  D  L  M  V  V  R  E  L  T  G   : G  I  Y  F  G  K  P  R  G  F  S  T  D  K  N  G  Q  E  I  G  F  N  T  E  V  Y  A  A  Y  E  :  I  E  R  I  A  R  I  A  F  E  T  A  R  K  R  R  G  K  L  C  S  V  D  K  A  N  V  L  E  :  A  S  M  L  W  R  K  I  V  T  A  L  A  S  E  Y  P  D  V  E  L  S  H  M  Y  V  D  N  A  A  M  Q  L  V  R  N  P  K  Q  :  F  D  T  I  V  T  N  N  I  F  G  D  I  L  S  D  E  A  S  M  I  T  G  S  I  G  M  L  P  S  A  S  L  G  A  A  :  G  P  G  L  F  E  P  I  H  G  S  A  P  D  I  A  G  Q  :  D  K  A  N  P  L  A  T  M  L  S  A  A  M  L  L  K  Y  G  L  G  E  E  K  A  A  Q  R  I  E  A  A  V  L  D  T  L  N  R  G  F  R  T  G  D  I  H  S  A  G  H  :  K  L  V  G  C  K  E  M  G  E  E  V  L  K  S  I  D  S  K  T  P  A  A  V  *  F  S  *  E  E  A  S  L  R  P  Q  Q  M  I  I  L  A  D  A  F  A  V  S  I  *  F  A  I  Y  A  T  V  *  R  I  Q  N  C  *  V  L  Y  R  S  L  N  V  S  I  L  F  S  D  V  F  E  T  L  S  C  C  N  M  K  *  T  L  E  Q  Q  *  S  C  F  N  E  F  K  L  W  N  Q  L  V  L  L  A  L  G  *  T  V  Y  S  T  S  P  *  T  L  C  E  H  E  M  L  C  A  S  G  C  P  F  Y  F  V  V  T  W  K  K  Q  *  K  *  A  F  L  H  L  G  K  T  G  M  E  Q  L  *  P  D  V  V  V  V  A  T  L  S  L  S  </second_frame>
            <third_frame>   I  Q  F  A  S  A  H  I  L  H  Q  W  R  L  L  L  L  L  Y  N  S  L  Q  L  L  L  T  N  F  I  P  K  K  Y  P  N  T  P  L  N  G  V  L  F  A  V  P  L  L  H  P  A  K  A  T  T  L  L  F  F  P  A  M  V  L  D  L  K  *  F  L  L  P  K  M  P  S  N  L  S  P  P  L  K  :  D  L  K  L  H  S  R  R  C  Q  W  E  G  L  H  W  M  L  *  G  Y  H  C  L  M  R  L  L  I  L  Q  R  N  L  M  L  L  F  L  E  Q  L  E   : D  I  N  G  T  K  M  K  N  I  *  S  P  R  L  D  C  F  N  F  E  K  V  C  R  S  L  L  T  *  D  Q  P  L  F  Y  H  S :   *  *  M  L  Q  L  *  R  K  K  L  L  K  V  *  T  *  W  L  L  G  N  L  L  E  :  V  F  I  L  A  N  Q  E  D  S  A  L  I  K  M  V  R  K  *  V  S  T  L  K  C  M  Q  H  M  R :   S  K  E  L  L  V  L  H  L  K  L  Q  G  S  E  E  E  N  Y  V  A  W  I  K  Q  M  Y  W  R :   P  L  C  F  G  G  R  *  L  Q  R  *  P  Q  S  I  L  M  *  S  S  L  T  C  M  L  I  M  Q  P  C  N  L  F  A  T  Q  N  S :   L  I  Q  L  *  Q  T  T  Y  L  V  T  S  C  P  M  K  H  Q  *  L  Q  E  V  S  G  C  F  H  L  P  V  L  V  Q  R :   D  L  D  Y  L  N  L  Y  M  V  L  L  L  I  L  L  G  R :   I  K  Q  T  L  W  Q  Q  C  S  V  L  L  C  F  *  S  M  A  *  V  R  R  R  L  L  R  E  L  K  Q  L  F  *  T  P  *  I  E  D  S  V  L  V  T  F  T  Q  Q  D  I :   N  W  S  D  A  R  K  W  V  K  K  C  S  S  L  S  T  A  K  L  L  L  L  F  N  F  L  K  R  R  L  H  *  D  L  N  K  *  S  F  W  Q  M  H  L  Q  S  V  Y  N  L  P  F  M  Q  L  F  E  G  F  K  I  A  E  C  C  I  V  A  *  T  S  R  F  F  S  L  M  F  L  R  H  Y  P  V  V  T  *  S  E  P  W  S  N  S  K  V  V  L  T  S  S  S  Y  G  I  N  W  C  C  L  H  *  D  R  L  S  T  L  L  L  L  R  P  Y  V  N  T  K  C  S  V  H  R  A  V  L  F  I  L  L  *  H  G  K  S  N  E  N  K  H  F  C  T  L  G  K  L  E  W  N  N  C  N  Q  M  L  L  W  L  L  H  C  L  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131035" stop="130783"/>
                    <exon start="128778" stop="128649"/>
                    <exon start="128533" stop="128422"/>
                    <exon start="126267" stop="126192"/>
                    <exon start="126074" stop="125986"/>
                    <exon start="125403" stop="125317"/>
                    <exon start="124594" stop="124478"/>
                    <exon start="124371" stop="124264"/>
                    <exon start="124161" stop="124108"/>
                    <exon start="123969" stop="123817"/>
                    <exon start="123583" stop="123509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVCFSSHSSSMAASSSSLQFTATPFNQFHSKKVPKHATKWGTIRCSASSPSKSYNITLLPGDGIGPEVISVAKNALQLVSSIEGFEVAFEEMPMGGAALDAVGVPLPDETLNSAKKSDATLLGAIGGYKWDKNEKHLKPETGLLQLREGLQVFANLRPATVLPQLVDASTLKKEVAEGVDLMVVRELTGGIYFGKPRGFSTDKNGQEIGFNTEVYAAYEIERIARIAFETARKRRGKLCSVDKANVLEASMLWRKIVTALASEYPDVELSHMYVDNAAMQLVRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGAAGPGLFEPIHGSAPDIAGQDKANPLATMLSAAMLLKYGLGEEKAAQRIEAAVLDTLNRGFRTGDIHSAGHKLVGCKEMGEEVLKSIDSKTPAAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="131036" e_stop="130783"/>
            <exon e_start="128778" e_stop="128649"/>
            <exon e_start="128533" e_stop="128422"/>
            <exon e_start="126267" e_stop="126192"/>
            <exon e_start="126074" e_stop="125986"/>
            <exon e_start="125403" e_stop="125317"/>
            <exon e_start="124594" e_stop="124478"/>
            <exon e_start="124371" e_stop="124264"/>
            <exon e_start="124161" e_stop="124108"/>
            <exon e_start="123969" e_stop="123817"/>
            <exon e_start="123583" e_stop="123265"/>
            <exon e_start="122581" e_stop="122558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.557" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.475" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.950"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131036" e_stop="130783" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.557">
            <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128778" e_stop="128649" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128533" e_stop="128422" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.874">
            <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126267" e_stop="126192" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.475" acc_prob="0.988">
            <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="126074" e_stop="125986" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.981">
            <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="125403" e_stop="125317" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.857">
            <gDNA_intron_boundary i_start="125316" i_stop="124595" i_length="722"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124594" e_stop="124478" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124477" i_stop="124372" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="124371" e_stop="124264" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.993">
            <gDNA_intron_boundary i_start="124263" i_stop="124162" i_length="102"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="124161" e_stop="124108" e_length="54"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="124107" i_stop="123970" i_length="138"/>
          </intron>
          <exon e_serial="10" e_score="0.987">
            <gDNA_exon_boundary e_start="123969" e_stop="123817" e_length="153"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233"/>
          </intron>
          <exon e_serial="11" e_score="0.950">
            <gDNA_exon_boundary e_start="123583" e_stop="123265" e_length="319"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="123264" i_stop="122582" i_length="683"/>
          </intron>
          <exon e_serial="12" e_score="0.750">
            <gDNA_exon_boundary e_start="122581" e_stop="122558" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131036" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279270" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131036" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279260" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131017" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131015" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131014" stop="130783"/>
              <exon start="128778" stop="128669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131013" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131012" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131010" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131003" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131000" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130998" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130994" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130987" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130981" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130956" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130956" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130834" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128508" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126062" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124322" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123817"/>
              <exon start="123583" stop="123434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123821" stop="123817"/>
              <exon start="123583" stop="123265"/>
              <exon start="122581" stop="122558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415286" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTCAGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG : GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG : ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG : TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG : GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG : ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG : GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG : TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG : GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG : GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT : AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATC : AAACTTAAAAAGAAACTAAAAAAA</gDNA_template>
            <first_frame> K  F  S  L  L  Q  L  T  F  F  I  N  G  G  F  F  F  F  F  T  I  H  C  N  S  F  *  P  I  S  F  Q  K  S  T  Q  T  R  H  *  M  G  Y  Y  S  L  F  R  F  F  T  Q  Q  K  L  Q  H  Y  S  S  S  R  R  W  Y  W  T  *  S  N  F  C  C  Q  K  C  P  P  T  C  L  L  H  *  R :   I  *  S  C  I  R  G  D  A  N  G  R  G  C  I  G  C  C  R  G  T  I  A  *  *  D  S  *  F  C  K  E  I  *  C  Y  S  S  W  S  N  W  R  :  I  *  M  G  Q  K  *  K  T  F  E  A  R  D  W  I  A  S  T  S  R  R  F  A  G  L  C  *  L  E  T  S  H  C  F  T  T   : V  S  R  C  F  N  F  E  E  R  S  C  *  R  C  R  P  N  G  C  *  G  T  Y  W  R :   Y  L  F  W  Q  T  K  R  I  Q  H  *  *  K  W  S  G  N  R  F  Q  H  *  S  V  C  S  I  *   : D  R  K  N  C  S  Y  C  I  *  N  C  K  E  A  K  R  K  T  M  *  R  G  *  S  K  C  I  G   : G  L  Y  A  L  E  E  D  S  Y  S  V  S  L  R  V  S  *  C  R  A  L  S  H  V  C  *  *  C  S  H  A  T  C  S  Q  P  K  T   : V  *  Y  N  C  D  K  Q  H  I  W  *  H  P  V  R  *  S  I  N  D  Y  R  K  Y  R  D  A  S  I  C  Q  S  W  C  S   : G  T  W  I  I  *  T  Y  T  W  F  C  S  *  Y  C  W  A   : G  *  S  K  P  F  G  N  N  A  Q  C  C  Y  A  S  E  V  W  P  R  *  G  E  G  C  S  E  N  *  S  S  C  F  R  H  L  K  S  R  I  P  Y  W  *  H  S  L  S  R  T   : *  I  G  R  M  Q  G  N  G  *  R  S  A  Q  V  Y  R  Q  Q  N  S  C  C  C  L  I  F  L  R  G  G  F  I  E  T  S  T  N  D  H  F  G  R  C  I  C  S  Q  Y  I  I  C  H  L  C  N  C  L  K  D  S  K  L  L  S  V  V  S  *  P  K  R  L  D  S  F  L  *  C  F  *  D  I  I  L  L  *  H  E  V  N  L  G  A  T  V  K  L  F  *  R  V  Q  V  M  E  S :   N  L  K  R  N  *  K   </first_frame>
            <second_frame>  N  S  V  C  F  S  S  H  S  S  S  M  A  A  S  S  S  S  L  Q  F  T  A  T  P  F  N  Q  F  H  S  K  K  V  P  K  H  A  T  K  W  G  T  I  R  C  S  A  S  S  P  S  K  S  Y  N  I  T  L  L  P  G  D  G  I  G  P  E  V  I  S  V  A  K  N  A  L  Q  L  V  S  S  I  E   : G  F  E  V  A  F  E  E  M  P  M  G  G  A  A  L  D  A  V  G  V  P  L  P  D  E  T  L  N  S  A  K  K  S  D  A  T  L  L  G  A  I  G  G :   Y  K  W  D  K  N  E  K  H  L  K  P  E  T  G  L  L  Q  L  R  E  G  L  Q  V  F  A  N  L  R  P  A  T  V  L  P  Q  :  L  V  D  A  S  T  L  K  K  E  V  A  E  G  V  D  L  M  V  V  R  E  L  T  G   : G  I  Y  F  G  K  P  R  G  F  S  T  D  K  N  G  Q  E  I  G  F  N  T  E  V  Y  A  A  Y  E  :  I  E  R  I  A  R  I  A  F  E  T  A  R  K  R  R  G  K  L  C  S  V  D  K  A  N  V  L  E  :  A  S  M  L  W  R  K  I  V  T  A  L  A  S  E  Y  P  D  V  E  L  S  H  M  Y  V  D  N  A  A  M  Q  L  V  R  N  P  K  Q  :  F  D  T  I  V  T  N  N  I  F  G  D  I  L  S  D  E  A  S  M  I  T  G  S  I  G  M  L  P  S  A  S  L  G  A  A  :  G  P  G  L  F  E  P  I  H  G  S  A  P  D  I  A  G  Q  :  D  K  A  N  P  L  A  T  M  L  S  A  A  M  L  L  K  Y  G  L  G  E  E  K  A  A  Q  R  I  E  A  A  V  L  D  T  L  N  R  G  F  R  T  G  D  I  H  S  A  G  H  :  K  L  V  G  C  K  E  M  G  E  E  V  L  K  S  I  D  S  K  T  P  A  A  V  *  F  S  *  E  E  A  S  L  R  P  Q  Q  M  I  I  L  A  D  A  F  A  V  S  I  *  F  A  I  Y  A  T  V  *  R  I  Q  N  C  *  V  L  Y  R  S  L  N  V  S  I  L  F  S  D  V  F  E  T  L  S  C  C  N  M  K  *  T  L  E  Q  Q  *  S  C  F  N  E  F  K  L  W  N   : Q  T  *  K  E  T  K  K  </second_frame>
            <third_frame>   I  Q  F  A  S  A  H  I  L  H  Q  W  R  L  L  L  L  L  Y  N  S  L  Q  L  L  L  T  N  F  I  P  K  K  Y  P  N  T  P  L  N  G  V  L  F  A  V  P  L  L  H  P  A  K  A  T  T  L  L  F  F  P  A  M  V  L  D  L  K  *  F  L  L  P  K  M  P  S  N  L  S  P  P  L  K  :  D  L  K  L  H  S  R  R  C  Q  W  E  G  L  H  W  M  L  *  G  Y  H  C  L  M  R  L  L  I  L  Q  R  N  L  M  L  L  F  L  E  Q  L  E   : D  I  N  G  T  K  M  K  N  I  *  S  P  R  L  D  C  F  N  F  E  K  V  C  R  S  L  L  T  *  D  Q  P  L  F  Y  H  S :   *  *  M  L  Q  L  *  R  K  K  L  L  K  V  *  T  *  W  L  L  G  N  L  L  E  :  V  F  I  L  A  N  Q  E  D  S  A  L  I  K  M  V  R  K  *  V  S  T  L  K  C  M  Q  H  M  R :   S  K  E  L  L  V  L  H  L  K  L  Q  G  S  E  E  E  N  Y  V  A  W  I  K  Q  M  Y  W  R :   P  L  C  F  G  G  R  *  L  Q  R  *  P  Q  S  I  L  M  *  S  S  L  T  C  M  L  I  M  Q  P  C  N  L  F  A  T  Q  N  S :   L  I  Q  L  *  Q  T  T  Y  L  V  T  S  C  P  M  K  H  Q  *  L  Q  E  V  S  G  C  F  H  L  P  V  L  V  Q  R :   D  L  D  Y  L  N  L  Y  M  V  L  L  L  I  L  L  G  R :   I  K  Q  T  L  W  Q  Q  C  S  V  L  L  C  F  *  S  M  A  *  V  R  R  R  L  L  R  E  L  K  Q  L  F  *  T  P  *  I  E  D  S  V  L  V  T  F  T  Q  Q  D  I :   N  W  S  D  A  R  K  W  V  K  K  C  S  S  L  S  T  A  K  L  L  L  L  F  N  F  L  K  R  R  L  H  *  D  L  N  K  *  S  F  W  Q  M  H  L  Q  S  V  Y  N  L  P  F  M  Q  L  F  E  G  F  K  I  A  E  C  C  I  V  A  *  T  S  R  F  F  S  L  M  F  L  R  H  Y  P  V  V  T  *  S  E  P  W  S  N  S  K  V  V  L  T  S  S  S  Y  G  I  :  K  L  K  K  K  L  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131035" stop="130783"/>
                    <exon start="128778" stop="128649"/>
                    <exon start="128533" stop="128422"/>
                    <exon start="126267" stop="126192"/>
                    <exon start="126074" stop="125986"/>
                    <exon start="125403" stop="125317"/>
                    <exon start="124594" stop="124478"/>
                    <exon start="124371" stop="124264"/>
                    <exon start="124161" stop="124108"/>
                    <exon start="123969" stop="123817"/>
                    <exon start="123583" stop="123509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVCFSSHSSSMAASSSSLQFTATPFNQFHSKKVPKHATKWGTIRCSASSPSKSYNITLLPGDGIGPEVISVAKNALQLVSSIEGFEVAFEEMPMGGAALDAVGVPLPDETLNSAKKSDATLLGAIGGYKWDKNEKHLKPETGLLQLREGLQVFANLRPATVLPQLVDASTLKKEVAEGVDLMVVRELTGGIYFGKPRGFSTDKNGQEIGFNTEVYAAYEIERIARIAFETARKRRGKLCSVDKANVLEASMLWRKIVTALASEYPDVELSHMYVDNAAMQLVRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGAAGPGLFEPIHGSAPDIAGQDKANPLATMLSAAMLLKYGLGEEKAAQRIEAAVLDTLNRGFRTGDIHSAGHKLVGCKEMGEEVLKSIDSKTPAAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="131036" e_stop="130783"/>
            <exon e_start="128778" e_stop="128649"/>
            <exon e_start="128533" e_stop="128422"/>
            <exon e_start="126267" e_stop="126192"/>
            <exon e_start="126074" e_stop="125986"/>
            <exon e_start="125403" e_stop="125317"/>
            <exon e_start="124594" e_stop="124478"/>
            <exon e_start="124371" e_stop="124264"/>
            <exon e_start="124161" e_stop="124108"/>
            <exon e_start="123969" e_stop="123817"/>
            <exon e_start="123583" e_stop="123273"/>
            <exon e_start="122581" e_stop="122559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.557" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.475" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.739"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131036" e_stop="130783" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.557">
            <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128778" e_stop="128649" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128533" e_stop="128422" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.874">
            <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126267" e_stop="126192" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.475" acc_prob="0.988">
            <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="126074" e_stop="125986" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.981">
            <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="125403" e_stop="125317" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.857">
            <gDNA_intron_boundary i_start="125316" i_stop="124595" i_length="722"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124594" e_stop="124478" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124477" i_stop="124372" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="124371" e_stop="124264" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.993">
            <gDNA_intron_boundary i_start="124263" i_stop="124162" i_length="102"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="124161" e_stop="124108" e_length="54"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="124107" i_stop="123970" i_length="138"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="123969" e_stop="123817" e_length="153"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="123583" e_stop="123273" e_length="311"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="123272" i_stop="122582" i_length="691"/>
          </intron>
          <exon e_serial="12" e_score="0.739">
            <gDNA_exon_boundary e_start="122581" e_stop="122559" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131036" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279270" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131036" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279260" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131017" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131015" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131014" stop="130783"/>
              <exon start="128778" stop="128669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131013" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131012" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131010" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131003" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131000" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130998" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130994" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130987" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130981" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130956" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130956" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130834" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128508" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126062" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124322" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123817"/>
              <exon start="123583" stop="123434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123968" stop="123817"/>
              <exon start="123583" stop="123273"/>
              <exon start="122581" stop="122559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123968" stop="123817"/>
              <exon start="123583" stop="123273"/>
              <exon start="122581" stop="122559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556508" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTCAGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG : GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG : ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG : TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG : GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG : ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG : GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG : TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG : GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG : GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT : AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTT : AAACTTAAAAAGAAACTAAAAAA</gDNA_template>
            <first_frame> K  F  S  L  L  Q  L  T  F  F  I  N  G  G  F  F  F  F  F  T  I  H  C  N  S  F  *  P  I  S  F  Q  K  S  T  Q  T  R  H  *  M  G  Y  Y  S  L  F  R  F  F  T  Q  Q  K  L  Q  H  Y  S  S  S  R  R  W  Y  W  T  *  S  N  F  C  C  Q  K  C  P  P  T  C  L  L  H  *  R :   I  *  S  C  I  R  G  D  A  N  G  R  G  C  I  G  C  C  R  G  T  I  A  *  *  D  S  *  F  C  K  E  I  *  C  Y  S  S  W  S  N  W  R  :  I  *  M  G  Q  K  *  K  T  F  E  A  R  D  W  I  A  S  T  S  R  R  F  A  G  L  C  *  L  E  T  S  H  C  F  T  T   : V  S  R  C  F  N  F  E  E  R  S  C  *  R  C  R  P  N  G  C  *  G  T  Y  W  R :   Y  L  F  W  Q  T  K  R  I  Q  H  *  *  K  W  S  G  N  R  F  Q  H  *  S  V  C  S  I  *   : D  R  K  N  C  S  Y  C  I  *  N  C  K  E  A  K  R  K  T  M  *  R  G  *  S  K  C  I  G   : G  L  Y  A  L  E  E  D  S  Y  S  V  S  L  R  V  S  *  C  R  A  L  S  H  V  C  *  *  C  S  H  A  T  C  S  Q  P  K  T   : V  *  Y  N  C  D  K  Q  H  I  W  *  H  P  V  R  *  S  I  N  D  Y  R  K  Y  R  D  A  S  I  C  Q  S  W  C  S   : G  T  W  I  I  *  T  Y  T  W  F  C  S  *  Y  C  W  A   : G  *  S  K  P  F  G  N  N  A  Q  C  C  Y  A  S  E  V  W  P  R  *  G  E  G  C  S  E  N  *  S  S  C  F  R  H  L  K  S  R  I  P  Y  W  *  H  S  L  S  R  T   : *  I  G  R  M  Q  G  N  G  *  R  S  A  Q  V  Y  R  Q  Q  N  S  C  C  C  L  I  F  L  R  G  G  F  I  E  T  S  T  N  D  H  F  G  R  C  I  C  S  Q  Y  I  I  C  H  L  C  N  C  L  K  D  S  K  L  L  S  V  V  S  *  P  K  R  L  D  S  F  L  *  C  F  *  D  I  I  L  L  *  H  E  V  N  L  G  A  T  V  K  L  F  *  R  V  Q  V  :  K  L  K  K  K  L  K   </first_frame>
            <second_frame>  N  S  V  C  F  S  S  H  S  S  S  M  A  A  S  S  S  S  L  Q  F  T  A  T  P  F  N  Q  F  H  S  K  K  V  P  K  H  A  T  K  W  G  T  I  R  C  S  A  S  S  P  S  K  S  Y  N  I  T  L  L  P  G  D  G  I  G  P  E  V  I  S  V  A  K  N  A  L  Q  L  V  S  S  I  E   : G  F  E  V  A  F  E  E  M  P  M  G  G  A  A  L  D  A  V  G  V  P  L  P  D  E  T  L  N  S  A  K  K  S  D  A  T  L  L  G  A  I  G  G :   Y  K  W  D  K  N  E  K  H  L  K  P  E  T  G  L  L  Q  L  R  E  G  L  Q  V  F  A  N  L  R  P  A  T  V  L  P  Q  :  L  V  D  A  S  T  L  K  K  E  V  A  E  G  V  D  L  M  V  V  R  E  L  T  G   : G  I  Y  F  G  K  P  R  G  F  S  T  D  K  N  G  Q  E  I  G  F  N  T  E  V  Y  A  A  Y  E  :  I  E  R  I  A  R  I  A  F  E  T  A  R  K  R  R  G  K  L  C  S  V  D  K  A  N  V  L  E  :  A  S  M  L  W  R  K  I  V  T  A  L  A  S  E  Y  P  D  V  E  L  S  H  M  Y  V  D  N  A  A  M  Q  L  V  R  N  P  K  Q  :  F  D  T  I  V  T  N  N  I  F  G  D  I  L  S  D  E  A  S  M  I  T  G  S  I  G  M  L  P  S  A  S  L  G  A  A  :  G  P  G  L  F  E  P  I  H  G  S  A  P  D  I  A  G  Q  :  D  K  A  N  P  L  A  T  M  L  S  A  A  M  L  L  K  Y  G  L  G  E  E  K  A  A  Q  R  I  E  A  A  V  L  D  T  L  N  R  G  F  R  T  G  D  I  H  S  A  G  H  :  K  L  V  G  C  K  E  M  G  E  E  V  L  K  S  I  D  S  K  T  P  A  A  V  *  F  S  *  E  E  A  S  L  R  P  Q  Q  M  I  I  L  A  D  A  F  A  V  S  I  *  F  A  I  Y  A  T  V  *  R  I  Q  N  C  *  V  L  Y  R  S  L  N  V  S  I  L  F  S  D  V  F  E  T  L  S  C  C  N  M  K  *  T  L  E  Q  Q  *  S  C  F  N  E  F  K  L :   N  L  K  R  N  *  K  </second_frame>
            <third_frame>   I  Q  F  A  S  A  H  I  L  H  Q  W  R  L  L  L  L  L  Y  N  S  L  Q  L  L  L  T  N  F  I  P  K  K  Y  P  N  T  P  L  N  G  V  L  F  A  V  P  L  L  H  P  A  K  A  T  T  L  L  F  F  P  A  M  V  L  D  L  K  *  F  L  L  P  K  M  P  S  N  L  S  P  P  L  K  :  D  L  K  L  H  S  R  R  C  Q  W  E  G  L  H  W  M  L  *  G  Y  H  C  L  M  R  L  L  I  L  Q  R  N  L  M  L  L  F  L  E  Q  L  E   : D  I  N  G  T  K  M  K  N  I  *  S  P  R  L  D  C  F  N  F  E  K  V  C  R  S  L  L  T  *  D  Q  P  L  F  Y  H  S :   *  *  M  L  Q  L  *  R  K  K  L  L  K  V  *  T  *  W  L  L  G  N  L  L  E  :  V  F  I  L  A  N  Q  E  D  S  A  L  I  K  M  V  R  K  *  V  S  T  L  K  C  M  Q  H  M  R :   S  K  E  L  L  V  L  H  L  K  L  Q  G  S  E  E  E  N  Y  V  A  W  I  K  Q  M  Y  W  R :   P  L  C  F  G  G  R  *  L  Q  R  *  P  Q  S  I  L  M  *  S  S  L  T  C  M  L  I  M  Q  P  C  N  L  F  A  T  Q  N  S :   L  I  Q  L  *  Q  T  T  Y  L  V  T  S  C  P  M  K  H  Q  *  L  Q  E  V  S  G  C  F  H  L  P  V  L  V  Q  R :   D  L  D  Y  L  N  L  Y  M  V  L  L  L  I  L  L  G  R :   I  K  Q  T  L  W  Q  Q  C  S  V  L  L  C  F  *  S  M  A  *  V  R  R  R  L  L  R  E  L  K  Q  L  F  *  T  P  *  I  E  D  S  V  L  V  T  F  T  Q  Q  D  I :   N  W  S  D  A  R  K  W  V  K  K  C  S  S  L  S  T  A  K  L  L  L  L  F  N  F  L  K  R  R  L  H  *  D  L  N  K  *  S  F  W  Q  M  H  L  Q  S  V  Y  N  L  P  F  M  Q  L  F  E  G  F  K  I  A  E  C  C  I  V  A  *  T  S  R  F  F  S  L  M  F  L  R  H  Y  P  V  V  T  *  S  E  P  W  S  N  S  K  V  V  L  T  S  S  S   : *  T  *  K  E  T  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131035" stop="130783"/>
                    <exon start="128778" stop="128649"/>
                    <exon start="128533" stop="128422"/>
                    <exon start="126267" stop="126192"/>
                    <exon start="126074" stop="125986"/>
                    <exon start="125403" stop="125317"/>
                    <exon start="124594" stop="124478"/>
                    <exon start="124371" stop="124264"/>
                    <exon start="124161" stop="124108"/>
                    <exon start="123969" stop="123817"/>
                    <exon start="123583" stop="123509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVCFSSHSSSMAASSSSLQFTATPFNQFHSKKVPKHATKWGTIRCSASSPSKSYNITLLPGDGIGPEVISVAKNALQLVSSIEGFEVAFEEMPMGGAALDAVGVPLPDETLNSAKKSDATLLGAIGGYKWDKNEKHLKPETGLLQLREGLQVFANLRPATVLPQLVDASTLKKEVAEGVDLMVVRELTGGIYFGKPRGFSTDKNGQEIGFNTEVYAAYEIERIARIAFETARKRRGKLCSVDKANVLEASMLWRKIVTALASEYPDVELSHMYVDNAAMQLVRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGAAGPGLFEPIHGSAPDIAGQDKANPLATMLSAAMLLKYGLGEEKAAQRIEAAVLDTLNRGFRTGDIHSAGHKLVGCKEMGEEVLKSIDSKTPAAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="131036" e_stop="130783"/>
            <exon e_start="128778" e_stop="128649"/>
            <exon e_start="128533" e_stop="128422"/>
            <exon e_start="126267" e_stop="126192"/>
            <exon e_start="126074" e_stop="125986"/>
            <exon e_start="125403" e_stop="125317"/>
            <exon e_start="124594" e_stop="124478"/>
            <exon e_start="124371" e_stop="124264"/>
            <exon e_start="124161" e_stop="124108"/>
            <exon e_start="123969" e_stop="123817"/>
            <exon e_start="123583" e_stop="123275"/>
            <exon e_start="122577" e_stop="122555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.557" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.475" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.826"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131036" e_stop="130783" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.557">
            <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128778" e_stop="128649" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128533" e_stop="128422" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.874">
            <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126267" e_stop="126192" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.475" acc_prob="0.988">
            <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="126074" e_stop="125986" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.981">
            <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="125403" e_stop="125317" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.857">
            <gDNA_intron_boundary i_start="125316" i_stop="124595" i_length="722"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124594" e_stop="124478" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124477" i_stop="124372" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="124371" e_stop="124264" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.993">
            <gDNA_intron_boundary i_start="124263" i_stop="124162" i_length="102"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="124161" e_stop="124108" e_length="54"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="124107" i_stop="123970" i_length="138"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="123969" e_stop="123817" e_length="153"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="123583" e_stop="123275" e_length="309"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="123274" i_stop="122578" i_length="697"/>
          </intron>
          <exon e_serial="12" e_score="0.826">
            <gDNA_exon_boundary e_start="122577" e_stop="122555" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131036" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279270" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131036" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279260" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131017" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131015" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131014" stop="130783"/>
              <exon start="128778" stop="128669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131013" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131012" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131010" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131003" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131000" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130998" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130994" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130987" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130981" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130956" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130956" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130834" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128508" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126062" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124322" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123817"/>
              <exon start="123583" stop="123434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123968" stop="123817"/>
              <exon start="123583" stop="123275"/>
              <exon start="122577" stop="122555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551719" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTCAGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG : GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG : ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG : TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG : GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG : ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG : GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG : TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG : GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG : GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT : AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAG : TTAAAAAGAAACTAAAAAAAAGA</gDNA_template>
            <first_frame> K  F  S  L  L  Q  L  T  F  F  I  N  G  G  F  F  F  F  F  T  I  H  C  N  S  F  *  P  I  S  F  Q  K  S  T  Q  T  R  H  *  M  G  Y  Y  S  L  F  R  F  F  T  Q  Q  K  L  Q  H  Y  S  S  S  R  R  W  Y  W  T  *  S  N  F  C  C  Q  K  C  P  P  T  C  L  L  H  *  R :   I  *  S  C  I  R  G  D  A  N  G  R  G  C  I  G  C  C  R  G  T  I  A  *  *  D  S  *  F  C  K  E  I  *  C  Y  S  S  W  S  N  W  R  :  I  *  M  G  Q  K  *  K  T  F  E  A  R  D  W  I  A  S  T  S  R  R  F  A  G  L  C  *  L  E  T  S  H  C  F  T  T   : V  S  R  C  F  N  F  E  E  R  S  C  *  R  C  R  P  N  G  C  *  G  T  Y  W  R :   Y  L  F  W  Q  T  K  R  I  Q  H  *  *  K  W  S  G  N  R  F  Q  H  *  S  V  C  S  I  *   : D  R  K  N  C  S  Y  C  I  *  N  C  K  E  A  K  R  K  T  M  *  R  G  *  S  K  C  I  G   : G  L  Y  A  L  E  E  D  S  Y  S  V  S  L  R  V  S  *  C  R  A  L  S  H  V  C  *  *  C  S  H  A  T  C  S  Q  P  K  T   : V  *  Y  N  C  D  K  Q  H  I  W  *  H  P  V  R  *  S  I  N  D  Y  R  K  Y  R  D  A  S  I  C  Q  S  W  C  S   : G  T  W  I  I  *  T  Y  T  W  F  C  S  *  Y  C  W  A   : G  *  S  K  P  F  G  N  N  A  Q  C  C  Y  A  S  E  V  W  P  R  *  G  E  G  C  S  E  N  *  S  S  C  F  R  H  L  K  S  R  I  P  Y  W  *  H  S  L  S  R  T   : *  I  G  R  M  Q  G  N  G  *  R  S  A  Q  V  Y  R  Q  Q  N  S  C  C  C  L  I  F  L  R  G  G  F  I  E  T  S  T  N  D  H  F  G  R  C  I  C  S  Q  Y  I  I  C  H  L  C  N  C  L  K  D  S  K  L  L  S  V  V  S  *  P  K  R  L  D  S  F  L  *  C  F  *  D  I  I  L  L  *  H  E  V  N  L  G  A  T  V  K  L  F  *  R  V  Q   : V  K  K  K  L  K  K  R </first_frame>
            <second_frame>  N  S  V  C  F  S  S  H  S  S  S  M  A  A  S  S  S  S  L  Q  F  T  A  T  P  F  N  Q  F  H  S  K  K  V  P  K  H  A  T  K  W  G  T  I  R  C  S  A  S  S  P  S  K  S  Y  N  I  T  L  L  P  G  D  G  I  G  P  E  V  I  S  V  A  K  N  A  L  Q  L  V  S  S  I  E   : G  F  E  V  A  F  E  E  M  P  M  G  G  A  A  L  D  A  V  G  V  P  L  P  D  E  T  L  N  S  A  K  K  S  D  A  T  L  L  G  A  I  G  G :   Y  K  W  D  K  N  E  K  H  L  K  P  E  T  G  L  L  Q  L  R  E  G  L  Q  V  F  A  N  L  R  P  A  T  V  L  P  Q  :  L  V  D  A  S  T  L  K  K  E  V  A  E  G  V  D  L  M  V  V  R  E  L  T  G   : G  I  Y  F  G  K  P  R  G  F  S  T  D  K  N  G  Q  E  I  G  F  N  T  E  V  Y  A  A  Y  E  :  I  E  R  I  A  R  I  A  F  E  T  A  R  K  R  R  G  K  L  C  S  V  D  K  A  N  V  L  E  :  A  S  M  L  W  R  K  I  V  T  A  L  A  S  E  Y  P  D  V  E  L  S  H  M  Y  V  D  N  A  A  M  Q  L  V  R  N  P  K  Q  :  F  D  T  I  V  T  N  N  I  F  G  D  I  L  S  D  E  A  S  M  I  T  G  S  I  G  M  L  P  S  A  S  L  G  A  A  :  G  P  G  L  F  E  P  I  H  G  S  A  P  D  I  A  G  Q  :  D  K  A  N  P  L  A  T  M  L  S  A  A  M  L  L  K  Y  G  L  G  E  E  K  A  A  Q  R  I  E  A  A  V  L  D  T  L  N  R  G  F  R  T  G  D  I  H  S  A  G  H  :  K  L  V  G  C  K  E  M  G  E  E  V  L  K  S  I  D  S  K  T  P  A  A  V  *  F  S  *  E  E  A  S  L  R  P  Q  Q  M  I  I  L  A  D  A  F  A  V  S  I  *  F  A  I  Y  A  T  V  *  R  I  Q  N  C  *  V  L  Y  R  S  L  N  V  S  I  L  F  S  D  V  F  E  T  L  S  C  C  N  M  K  *  T  L  E  Q  Q  *  S  C  F  N  E  F  K  :  L  K  R  N  *  K  K   </second_frame>
            <third_frame>   I  Q  F  A  S  A  H  I  L  H  Q  W  R  L  L  L  L  L  Y  N  S  L  Q  L  L  L  T  N  F  I  P  K  K  Y  P  N  T  P  L  N  G  V  L  F  A  V  P  L  L  H  P  A  K  A  T  T  L  L  F  F  P  A  M  V  L  D  L  K  *  F  L  L  P  K  M  P  S  N  L  S  P  P  L  K  :  D  L  K  L  H  S  R  R  C  Q  W  E  G  L  H  W  M  L  *  G  Y  H  C  L  M  R  L  L  I  L  Q  R  N  L  M  L  L  F  L  E  Q  L  E   : D  I  N  G  T  K  M  K  N  I  *  S  P  R  L  D  C  F  N  F  E  K  V  C  R  S  L  L  T  *  D  Q  P  L  F  Y  H  S :   *  *  M  L  Q  L  *  R  K  K  L  L  K  V  *  T  *  W  L  L  G  N  L  L  E  :  V  F  I  L  A  N  Q  E  D  S  A  L  I  K  M  V  R  K  *  V  S  T  L  K  C  M  Q  H  M  R :   S  K  E  L  L  V  L  H  L  K  L  Q  G  S  E  E  E  N  Y  V  A  W  I  K  Q  M  Y  W  R :   P  L  C  F  G  G  R  *  L  Q  R  *  P  Q  S  I  L  M  *  S  S  L  T  C  M  L  I  M  Q  P  C  N  L  F  A  T  Q  N  S :   L  I  Q  L  *  Q  T  T  Y  L  V  T  S  C  P  M  K  H  Q  *  L  Q  E  V  S  G  C  F  H  L  P  V  L  V  Q  R :   D  L  D  Y  L  N  L  Y  M  V  L  L  L  I  L  L  G  R :   I  K  Q  T  L  W  Q  Q  C  S  V  L  L  C  F  *  S  M  A  *  V  R  R  R  L  L  R  E  L  K  Q  L  F  *  T  P  *  I  E  D  S  V  L  V  T  F  T  Q  Q  D  I :   N  W  S  D  A  R  K  W  V  K  K  C  S  S  L  S  T  A  K  L  L  L  L  F  N  F  L  K  R  R  L  H  *  D  L  N  K  *  S  F  W  Q  M  H  L  Q  S  V  Y  N  L  P  F  M  Q  L  F  E  G  F  K  I  A  E  C  C  I  V  A  *  T  S  R  F  F  S  L  M  F  L  R  H  Y  P  V  V  T  *  S  E  P  W  S  N  S  K  V  V  L  T  S  S  S :   *  K  E  T  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131035" stop="130783"/>
                    <exon start="128778" stop="128649"/>
                    <exon start="128533" stop="128422"/>
                    <exon start="126267" stop="126192"/>
                    <exon start="126074" stop="125986"/>
                    <exon start="125403" stop="125317"/>
                    <exon start="124594" stop="124478"/>
                    <exon start="124371" stop="124264"/>
                    <exon start="124161" stop="124108"/>
                    <exon start="123969" stop="123817"/>
                    <exon start="123583" stop="123509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVCFSSHSSSMAASSSSLQFTATPFNQFHSKKVPKHATKWGTIRCSASSPSKSYNITLLPGDGIGPEVISVAKNALQLVSSIEGFEVAFEEMPMGGAALDAVGVPLPDETLNSAKKSDATLLGAIGGYKWDKNEKHLKPETGLLQLREGLQVFANLRPATVLPQLVDASTLKKEVAEGVDLMVVRELTGGIYFGKPRGFSTDKNGQEIGFNTEVYAAYEIERIARIAFETARKRRGKLCSVDKANVLEASMLWRKIVTALASEYPDVELSHMYVDNAAMQLVRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGAAGPGLFEPIHGSAPDIAGQDKANPLATMLSAAMLLKYGLGEEKAAQRIEAAVLDTLNRGFRTGDIHSAGHKLVGCKEMGEEVLKSIDSKTPAAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="131036" e_stop="130783"/>
            <exon e_start="128778" e_stop="128649"/>
            <exon e_start="128533" e_stop="128422"/>
            <exon e_start="126267" e_stop="126192"/>
            <exon e_start="126074" e_stop="125986"/>
            <exon e_start="125403" e_stop="125317"/>
            <exon e_start="124594" e_stop="124478"/>
            <exon e_start="124371" e_stop="124264"/>
            <exon e_start="124161" e_stop="124108"/>
            <exon e_start="123969" e_stop="123817"/>
            <exon e_start="123583" e_stop="123282"/>
            <exon e_start="122581" e_stop="122558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.557" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.475" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131036" e_stop="130783" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.557">
            <gDNA_intron_boundary i_start="130782" i_stop="128779" i_length="2004"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128778" e_stop="128649" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="128648" i_stop="128534" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128533" e_stop="128422" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.874">
            <gDNA_intron_boundary i_start="128421" i_stop="126268" i_length="2154"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126267" e_stop="126192" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.475" acc_prob="0.988">
            <gDNA_intron_boundary i_start="126191" i_stop="126075" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="126074" e_stop="125986" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.981">
            <gDNA_intron_boundary i_start="125985" i_stop="125404" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="125403" e_stop="125317" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.857">
            <gDNA_intron_boundary i_start="125316" i_stop="124595" i_length="722"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124594" e_stop="124478" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124477" i_stop="124372" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="124371" e_stop="124264" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.993">
            <gDNA_intron_boundary i_start="124263" i_stop="124162" i_length="102"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="124161" e_stop="124108" e_length="54"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="124107" i_stop="123970" i_length="138"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="123969" e_stop="123817" e_length="153"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="123816" i_stop="123584" i_length="233"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="123583" e_stop="123282" e_length="302"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="123281" i_stop="122582" i_length="700"/>
          </intron>
          <exon e_serial="12" e_score="0.750">
            <gDNA_exon_boundary e_start="122581" e_stop="122558" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131036" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279270" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131036" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279260" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131018" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123817"/>
              <exon start="123583" stop="123282"/>
              <exon start="122581" stop="122558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131017" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131015" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131014" stop="130783"/>
              <exon start="128778" stop="128669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131013" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131012" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131010" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131003" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131000" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130998" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130994" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130987" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130986" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130981" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130956" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130956" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130834" stop="130783"/>
              <exon start="128778" stop="128649"/>
              <exon start="128533" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128508" stop="128422"/>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126267" stop="126192"/>
              <exon start="126074" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126062" stop="125986"/>
              <exon start="125403" stop="125317"/>
              <exon start="124594" stop="124478"/>
              <exon start="124371" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124322" stop="124264"/>
              <exon start="124161" stop="124108"/>
              <exon start="123969" stop="123817"/>
              <exon start="123583" stop="123434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTCAGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG : GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG : ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG : TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG : GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG : ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG : GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG : TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG : GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG : GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT : AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGA : AAACTTAAAAAGAAACTAAAAAAA</gDNA_template>
            <first_frame> K  F  S  L  L  Q  L  T  F  F  I  N  G  G  F  F  F  F  F  T  I  H  C  N  S  F  *  P  I  S  F  Q  K  S  T  Q  T  R  H  *  M  G  Y  Y  S  L  F  R  F  F  T  Q  Q  K  L  Q  H  Y  S  S  S  R  R  W  Y  W  T  *  S  N  F  C  C  Q  K  C  P  P  T  C  L  L  H  *  R :   I  *  S  C  I  R  G  D  A  N  G  R  G  C  I  G  C  C  R  G  T  I  A  *  *  D  S  *  F  C  K  E  I  *  C  Y  S  S  W  S  N  W  R  :  I  *  M  G  Q  K  *  K  T  F  E  A  R  D  W  I  A  S  T  S  R  R  F  A  G  L  C  *  L  E  T  S  H  C  F  T  T   : V  S  R  C  F  N  F  E  E  R  S  C  *  R  C  R  P  N  G  C  *  G  T  Y  W  R :   Y  L  F  W  Q  T  K  R  I  Q  H  *  *  K  W  S  G  N  R  F  Q  H  *  S  V  C  S  I  *   : D  R  K  N  C  S  Y  C  I  *  N  C  K  E  A  K  R  K  T  M  *  R  G  *  S  K  C  I  G   : G  L  Y  A  L  E  E  D  S  Y  S  V  S  L  R  V  S  *  C  R  A  L  S  H  V  C  *  *  C  S  H  A  T  C  S  Q  P  K  T   : V  *  Y  N  C  D  K  Q  H  I  W  *  H  P  V  R  *  S  I  N  D  Y  R  K  Y  R  D  A  S  I  C  Q  S  W  C  S   : G  T  W  I  I  *  T  Y  T  W  F  C  S  *  Y  C  W  A   : G  *  S  K  P  F  G  N  N  A  Q  C  C  Y  A  S  E  V  W  P  R  *  G  E  G  C  S  E  N  *  S  S  C  F  R  H  L  K  S  R  I  P  Y  W  *  H  S  L  S  R  T   : *  I  G  R  M  Q  G  N  G  *  R  S  A  Q  V  Y  R  Q  Q  N  S  C  C  C  L  I  F  L  R  G  G  F  I  E  T  S  T  N  D  H  F  G  R  C  I  C  S  Q  Y  I  I  C  H  L  C  N  C  L  K  D  S  K  L  L  S  V  V  S  *  P  K  R  L  D  S  F  L  *  C  F  *  D  I  I  L  L  *  H  E  V  N  L  G  A  T  V  K  L  F  *  R  :  K  L  K  K  K  L  K  K </first_frame>
            <second_frame>  N  S  V  C  F  S  S  H  S  S  S  M  A  A  S  S  S  S  L  Q  F  T  A  T  P  F  N  Q  F  H  S  K  K  V  P  K  H  A  T  K  W  G  T  I  R  C  S  A  S  S  P  S  K  S  Y  N  I  T  L  L  P  G  D  G  I  G  P  E  V  I  S  V  A  K  N  A  L  Q  L  V  S  S  I  E   : G  F  E  V  A  F  E  E  M  P  M  G  G  A  A  L  D  A  V  G  V  P  L  P  D  E  T  L  N  S  A  K  K  S  D  A  T  L  L  G  A  I  G  G :   Y  K  W  D  K  N  E  K  H  L  K  P  E  T  G  L  L  Q  L  R  E  G  L  Q  V  F  A  N  L  R  P  A  T  V  L  P  Q  :  L  V  D  A  S  T  L  K  K  E  V  A  E  G  V  D  L  M  V  V  R  E  L  T  G   : G  I  Y  F  G  K  P  R  G  F  S  T  D  K  N  G  Q  E  I  G  F  N  T  E  V  Y  A  A  Y  E  :  I  E  R  I  A  R  I  A  F  E  T  A  R  K  R  R  G  K  L  C  S  V  D  K  A  N  V  L  E  :  A  S  M  L  W  R  K  I  V  T  A  L  A  S  E  Y  P  D  V  E  L  S  H  M  Y  V  D  N  A  A  M  Q  L  V  R  N  P  K  Q  :  F  D  T  I  V  T  N  N  I  F  G  D  I  L  S  D  E  A  S  M  I  T  G  S  I  G  M  L  P  S  A  S  L  G  A  A  :  G  P  G  L  F  E  P  I  H  G  S  A  P  D  I  A  G  Q  :  D  K  A  N  P  L  A  T  M  L  S  A  A  M  L  L  K  Y  G  L  G  E  E  K  A  A  Q  R  I  E  A  A  V  L  D  T  L  N  R  G  F  R  T  G  D  I  H  S  A  G  H  :  K  L  V  G  C  K  E  M  G  E  E  V  L  K  S  I  D  S  K  T  P  A  A  V  *  F  S  *  E  E  A  S  L  R  P  Q  Q  M  I  I  L  A  D  A  F  A  V  S  I  *  F  A  I  Y  A  T  V  *  R  I  Q  N  C  *  V  L  Y  R  S  L  N  V  S  I  L  F  S  D  V  F  E  T  L  S  C  C  N  M  K  *  T  L  E  Q  Q  *  S  C  F  N  E :   N  L  K  R  N  *  K   </second_frame>
            <third_frame>   I  Q  F  A  S  A  H  I  L  H  Q  W  R  L  L  L  L  L  Y  N  S  L  Q  L  L  L  T  N  F  I  P  K  K  Y  P  N  T  P  L  N  G  V  L  F  A  V  P  L  L  H  P  A  K  A  T  T  L  L  F  F  P  A  M  V  L  D  L  K  *  F  L  L  P  K  M  P  S  N  L  S  P  P  L  K  :  D  L  K  L  H  S  R  R  C  Q  W  E  G  L  H  W  M  L  *  G  Y  H  C  L  M  R  L  L  I  L  Q  R  N  L  M  L  L  F  L  E  Q  L  E   : D  I  N  G  T  K  M  K  N  I  *  S  P  R  L  D  C  F  N  F  E  K  V  C  R  S  L  L  T  *  D  Q  P  L  F  Y  H  S :   *  *  M  L  Q  L  *  R  K  K  L  L  K  V  *  T  *  W  L  L  G  N  L  L  E  :  V  F  I  L  A  N  Q  E  D  S  A  L  I  K  M  V  R  K  *  V  S  T  L  K  C  M  Q  H  M  R :   S  K  E  L  L  V  L  H  L  K  L  Q  G  S  E  E  E  N  Y  V  A  W  I  K  Q  M  Y  W  R :   P  L  C  F  G  G  R  *  L  Q  R  *  P  Q  S  I  L  M  *  S  S  L  T  C  M  L  I  M  Q  P  C  N  L  F  A  T  Q  N  S :   L  I  Q  L  *  Q  T  T  Y  L  V  T  S  C  P  M  K  H  Q  *  L  Q  E  V  S  G  C  F  H  L  P  V  L  V  Q  R :   D  L  D  Y  L  N  L  Y  M  V  L  L  L  I  L  L  G  R :   I  K  Q  T  L  W  Q  Q  C  S  V  L  L  C  F  *  S  M  A  *  V  R  R  R  L  L  R  E  L  K  Q  L  F  *  T  P  *  I  E  D  S  V  L  V  T  F  T  Q  Q  D  I :   N  W  S  D  A  R  K  W  V  K  K  C  S  S  L  S  T  A  K  L  L  L  L  F  N  F  L  K  R  R  L  H  *  D  L  N  K  *  S  F  W  Q  M  H  L  Q  S  V  Y  N  L  P  F  M  Q  L  F  E  G  F  K  I  A  E  C  C  I  V  A  *  T  S  R  F  F  S  L  M  F  L  R  H  Y  P  V  V  T  *  S  E  P  W  S  N  S  K  V  V  L  T   : K  T  *  K  E  T  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131035" stop="130783"/>
                    <exon start="128778" stop="128649"/>
                    <exon start="128533" stop="128422"/>
                    <exon start="126267" stop="126192"/>
                    <exon start="126074" stop="125986"/>
                    <exon start="125403" stop="125317"/>
                    <exon start="124594" stop="124478"/>
                    <exon start="124371" stop="124264"/>
                    <exon start="124161" stop="124108"/>
                    <exon start="123969" stop="123817"/>
                    <exon start="123583" stop="123509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVCFSSHSSSMAASSSSLQFTATPFNQFHSKKVPKHATKWGTIRCSASSPSKSYNITLLPGDGIGPEVISVAKNALQLVSSIEGFEVAFEEMPMGGAALDAVGVPLPDETLNSAKKSDATLLGAIGGYKWDKNEKHLKPETGLLQLREGLQVFANLRPATVLPQLVDASTLKKEVAEGVDLMVVRELTGGIYFGKPRGFSTDKNGQEIGFNTEVYAAYEIERIARIAFETARKRRGKLCSVDKANVLEASMLWRKIVTALASEYPDVELSHMYVDNAAMQLVRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGAAGPGLFEPIHGSAPDIAGQDKANPLATMLSAAMLLKYGLGEEKAAQRIEAAVLDTLNRGFRTGDIHSAGHKLVGCKEMGEEVLKSIDSKTPAAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="127774" e_stop="127324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="127774" e_stop="127324" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127774" stop="127324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAG</gDNA_template>
            <first_frame> L  P  G  E  *  A  Q  Q  M  F  G  H  *  K  N  D  *  K  I  K  I  C  R  I  Y  F  *  N  F  V  K  F  F  R  K  K  C  T  T  L  I  C  C  V  R  I  I  I  *  R  I  *  S  S  F  L  F  V  Y  R  I  V  S  Y  L  N  A  N  Y  R  I  T  Y  *  L  *  S  N  T  *  N  K  D  *  N  *  S  I  *  R  V  L  S  G  R  F  K  T  W  K  Y  F  T  R  H  P  W  S  I  S  S  *  Q  H  K  V  K  V  N  C  A  C  E  C  P  S  Y  P  S  V  S  Y  M  T  *  E  L  N  G  C  L  R  R  L  E  V  V  S  S  Q  </first_frame>
            <second_frame>  F  Q  G  S  E  P  N  R  C  L  D  I  K  K  M  I  K  R  *  K  S  V  E  Y  I  F  K  I  S  *  N  S  S  E  R  N  A  Q  R  *  F  V  V  C  A  *  *  F  E  E  F  K  V  L  F  C  L  F  I  E  L  *  V  T  *  M  L  I  I  E  *  H  I  S  Y  D  Q  I  L  K  T  K  I  K  T  E  V  F  D  V  Y  *  V  D  D  S  R  H  G  S  I  L  L  G  I  H  G  A  Y  Q  V  N  N  T  R  L  K  *  T  V  H  V  N  A  P  L  I  Q  A  Y  P  T  *  L  K  N  S  M  V  A  S  G  V  *  R  L  S  R  L  K </second_frame>
            <third_frame>   S  R  G  V  S  P  T  D  V  W  T  L  K  K  *  L  K  D  K  N  L  *  N  I  F  L  K  F  R  K  I  L  Q  K  E  M  H  N  V  N  L  L  C  A  H  N  N  L  K  N  L  K  F  F  F  V  C  L  *  N  C  K  L  P  K  C  *  L  *  N  N  I  L  V  M  I  K  Y  L  K  Q  R  L  K  L  K  Y  L  T  C  I  E  W  T  I  Q  D  M  E  V  F  Y  *  A  S  M  E  H  I  K  L  T  T  Q  G  *  S  K  L  C  M  *  M  P  L  L  S  K  R  I  L  H  D  L  R  T  Q  W  L  P  Q  A  F  R  G  C  L  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLe0028N03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="133309" PGL_stop="131808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133309" e_stop="132642"/>
            <exon e_start="131824" e_stop="131808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.236" acc_prob="0.000" e_score="0.957"/>
          <exon-only e_score="0.882"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="133309" e_stop="132642" e_length="668"/>
          </exon>
          <intron i_serial="1" don_prob="0.236" acc_prob="0.000">
            <gDNA_intron_boundary i_start="132641" i_stop="131825" i_length="817"/>
          </intron>
          <exon e_serial="2" e_score="0.882">
            <gDNA_exon_boundary e_start="131824" e_stop="131808" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133309" stop="132664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133308" stop="133152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133161" stop="132642"/>
              <exon start="131824" stop="131808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTCTCATAGAAAAAAATAGGAAAGTATAGAGGGAATTAAAAGAAATAATGGCTATTAACAAAAATATTACTAGTATCTTTTTAATTGCCATTGTTACTATCTTTATTTCAAGCAAACTTGCATATGCACATGAGGAAATACCCCACCCCCACCCCCACCCCCAACCTTGCTCGCCTCACCCCGACCCCCACCCCCACCCCCACCCCCAAGGTCCTGAGGGGCCAGTATTTGAATTTTCAGGAAGAAAATTTAAAATGGAACAAGGACATGAACAATGTTATGAAAATTGTTATAAAGGTATATTTGGTGGTGAAGGAAGTCCATTATATGCTGAACAAGAATGCTATGATATGTGCCATAACCATGGTAAATTTGCATTCCCAACTTTTAGTCCTCCTCCTCCTCAACTATAAGTTTAATTTCAATTTCAACGTATCGAGAATAACCTAAGCTACGCTCGCTCAATCAAATGTTATTCGAGCTATTTTTGAGGAGTTAAAAAGAGGTTATATTTTGATCGCGATTATATGGAGGCACATTTTTATTTTTATTTTTGATTTCATGTCATATAAATTTTTATAACCAATGTATGTTGGTGATCATATGTATATGTAACATTTTTATGAAATACATTTTCACTTGGCATGAATATGATGAACTTATTG : AAAAAAAAGAAGAAAAA</gDNA_template>
            <first_frame> L  F  S  *  K  K  I  G  K  Y  R  G  N  *  K  K  *  W  L  L  T  K  I  L  L  V  S  F  *  L  P  L  L  L  S  L  F  Q  A  N  L  H  M  H  M  R  K  Y  P  T  P  T  P  T  P  N  L  A  R  L  T  P  T  P  T  P  T  P  T  P  K  V  L  R  G  Q  Y  L  N  F  Q  E  E  N  L  K  W  N  K  D  M  N  N  V  M  K  I  V  I  K  V  Y  L  V  V  K  E  V  H  Y  M  L  N  K  N  A  M  I  C  A  I  T  M  V  N  L  H  S  Q  L  L  V  L  L  L  L  N  Y  K  F  N  F  N  F  N  V  S  R  I  T  *  A  T  L  A  Q  S  N  V  I  R  A  I  F  E  E  L  K  R  G  Y  I  L  I  A  I  I  W  R  H  I  F  I  F  I  F  D  F  M  S  Y  K  F  L  *  P  M  Y  V  G  D  H  M  Y  M  *  H  F  Y  E  I  H  F  H  L  A  *  I  *  *  T  Y  * :   K  K  R  R  K  </first_frame>
            <second_frame>  F  S  H  R  K  K  *  E  S  I  E  G  I  K  R  N  N  G  Y  *  Q  K  Y  Y  *  Y  L  F  N  C  H  C  Y  Y  L  Y  F  K  Q  T  C  I  C  T  *  G  N  T  P  P  P  P  P  P  P  T  L  L  A  S  P  R  P  P  P  P  P  P  P  P  R  S  *  G  A  S  I  *  I  F  R  K  K  I  *  N  G  T  R  T  *  T  M  L  *  K  L  L  *  R  Y  I  W  W  *  R  K  S  I  I  C  *  T  R  M  L  *  Y  V  P  *  P  W  *  I  C  I  P  N  F  *  S  S  S  S  S  T  I  S  L  I  S  I  S  T  Y  R  E  *  P  K  L  R  S  L  N  Q  M  L  F  E  L  F  L  R  S  *  K  E  V  I  F  *  S  R  L  Y  G  G  T  F  L  F  L  F  L  I  S  C  H  I  N  F  Y  N  Q  C  M  L  V  I  I  C  I  C  N  I  F  M  K  Y  I  F  T  W  H  E  Y  D  E  L  I   : E  K  K  E  E  K </second_frame>
            <third_frame>   F  L  I  E  K  N  R  K  V  *  R  E  L  K  E  I  M  A  I  N  K  N  I  T  S  I  F  L  I  A  I  V  T  I  F  I  S  S  K  L  A  Y  A  H  E  E  I  P  H  P  H  P  H  P  Q  P  C  S  P  H  P  D  P  H  P  H  P  H  P  Q  G  P  E  G  P  V  F  E  F  S  G  R  K  F  K  M  E  Q  G  H  E  Q  C  Y  E  N  C  Y  K  G  I  F  G  G  E  G  S  P  L  Y  A  E  Q  E  C  Y  D  M  C  H  N  H  G  K  F  A  F  P  T  F  S  P  P  P  P  Q  L  *  V  *  F  Q  F  Q  R  I  E  N  N  L  S  Y  A  R  S  I  K  C  Y  S  S  Y  F  *  G  V  K  K  R  L  Y  F  D  R  D  Y  M  E  A  H  F  Y  F  Y  F  *  F  H  V  I  *  I  F  I  T  N  V  C  W  *  S  Y  V  Y  V  T  F  L  *  N  T  F  S  L  G  M  N  M  M  N  L  L  :  K  K  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133277" stop="132894"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RELKEIMAINKNITSIFLIAIVTIFISSKLAYAHEEIPHPHPHPQPCSPHPDPHPHPHPQGPEGPVFEFSGRKFKMEQGHEQCYENCYKGIFGGEGSPLYAEQECYDMCHNHGKFAFPTFSPPPPQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133222" stop="132857"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPLLLSLFQANLHMHMRKYPTPTPTPNLARLTPTPTPTPTPKVLRGQYLNFQEENLKWNKDMNNVMKIVIKVYLVVKEVHYMLNKNAMICAITMVNLHSQLLVLLLLNYKFNFNFNVSRIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="132643" PGL_stop="133329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132643" e_stop="133329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="132643" e_stop="133329" e_length="687"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132643" stop="133329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132650" stop="133165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132651" stop="133117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAAGTTCATCATATTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACATATACATATGATCACCAACATACATTGGTTATAAAAATTTATATGACATGAAATCAAAAATAAAAATAAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCGTAGCTTAGGTTATTCTCGATACGTTGAAATTGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCAGGACCTTGGGGGTGGGGGTGGGGGTGGGGGTCGGGGTGAGGCGAGCAAGGTTGGGGGTGGGGGTGGGGGTGGGGTATTTCCTCATGTGCATATGCAAGTTTGCTTGAAATAAAGATAGTAACAATGGCAATTAAAAAGATACTAGTAATATTTTTGTTAATAGCCATTATTTCTTTTAATTCCCTCTATACTTTCCTATTTTTTTCTATGAGAAAAGTTAAAAAGAGGGAATAAAAA</gDNA_template>
            <first_frame> N  K  F  I  I  F  M  P  S  E  N  V  F  H  K  N  V  T  Y  T  Y  D  H  Q  H  T  L  V  I  K  I  Y  M  T  *  N  Q  K  *  K  *  K  C  A  S  I  *  S  R  S  K  Y  N  L  F  L  T  P  Q  K  *  L  E  *  H  L  I  E  R  A  *  L  R  L  F  S  I  R  *  N  *  N  *  T  Y  S  *  G  G  G  G  L  K  V  G  N  A  N  L  P  W  L  W  H  I  S  *  H  S  C  S  A  Y  N  G  L  P  S  P  P  N  I  P  L  *  Q  F  S  *  H  C  S  C  P  C  S  I  L  N  F  L  P  E  N  S  N  T  G  P  S  G  P  W  G  W  G  W  G  W  G  S  G  *  G  E  Q  G  W  G  W  G  W  G  W  G  I  S  S  C  A  Y  A  S  L  L  E  I  K  I  V  T  M  A  I  K  K  I  L  V  I  F  L  L  I  A  I  I  S  F  N  S  L  Y  T  F  L  F  F  S  M  R  K  V  K  K  R  E  *  K </first_frame>
            <second_frame>  I  S  S  S  Y  S  C  Q  V  K  M  Y  F  I  K  M  L  H  I  H  M  I  T  N  I  H  W  L  *  K  F  I  *  H  E  I  K  N  K  N  K  N  V  P  P  Y  N  R  D  Q  N  I  T  S  F  *  L  L  K  N  S  S  N  N  I  *  L  S  E  R  S  L  G  Y  S  R  Y  V  E  I  E  I  K  L  I  V  E  E  E  E  D  *  K  L  G  M  Q  I  Y  H  G  Y  G  T  Y  H  S  I  L  V  Q  H  I  M  D  F  L  H  H  Q  I  Y  L  Y  N  N  F  H  N  I  V  H  V  L  V  P  F  *  I  F  F  L  K  I  Q  I  L  A  P  Q  D  L  G  G  G  G  G  G  G  G  R  G  E  A  S  K  V  G  G  G  G  G  G  G  V  F  P  H  V  H  M  Q  V  C  L  K  *  R  *  *  Q  W  Q  L  K  R  Y  *  *  Y  F  C  *  *  P  L  F  L  L  I  P  S  I  L  S  Y  F  F  L  *  E  K  L  K  R  G  N  K   </second_frame>
            <third_frame>   *  V  H  H  I  H  A  K  *  K  C  I  S  *  K  C  Y  I  Y  I  *  S  P  T  Y  I  G  Y  K  N  L  Y  D  M  K  S  K  I  K  I  K  M  C  L  H  I  I  A  I  K  I  *  P  L  F  N  S  S  K  I  A  R  I  T  F  D  *  A  S  V  A  *  V  I  L  D  T  L  K  L  K  L  N  L  *  L  R  R  R  R  T  K  S  W  E  C  K  F  T  M  V  M  A  H  I  I  A  F  L  F  S  I  *  W  T  S  F  T  T  K  Y  T  F  I  T  I  F  I  T  L  F  M  S  L  F  H  F  K  F  S  S  *  K  F  K  Y  W  P  L  R  T  L  G  V  G  V  G  V  G  V  G  V  R  R  A  R  L  G  V  G  V  G  V  G  Y  F  L  M  C  I  C  K  F  A  *  N  K  D  S  N  N  G  N  *  K  D  T  S  N  I  F  V  N  S  H  Y  F  F  *  F  P  L  Y  F  P  I  F  F  Y  E  K  S  *  K  E  G  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133132" stop="133326"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEQGWGWGWGWGISSCAYASLLEIKIVTMAIKKILVIFLLIAIISFNSLYTFLFFSMRKVKKRE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="-" PGL_start="134669" PGL_stop="133923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134669" e_stop="133923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="134669" e_stop="133923" e_length="747"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134669" stop="133939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134528" stop="133923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134520" stop="133934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395302" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAAAGATCCGACAATGTTCGCCAATTAAGTTGGCCAATATTATACAAAATCGCACTAGGCATTGCTCGAGGATTGGAGTACTTGCACCGTGGTTGTAACACTCGGATTTTGCATTTTGATATAAAGCCTCATAATATCTTACTTGATGAGGATTTTTGTCCAAAGATCTCTGACTTTGGCCTTGCCAAACTATGCATAAAAAAGGAGAGTGTCGTGTCAATGTTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGTGTCTCTCACAAGTCTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCACTAGTGAAATCTACTTTCCACATTGGCTTTATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATCGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATCTATTTTCTCCCTCAAGATCAGAGGTAAATTCATTAGTAGTAGAACTGGCCTAGCCTTTATTTGCTGATATGTAAGCTATCATTTGTATTATTGTATAGCCTCACTTTGTTATGAAATTTCAGCTAAATAGTTGTTGTTTT</gDNA_template>
            <first_frame> E  K  R  S  D  N  V  R  Q  L  S  W  P  I  L  Y  K  I  A  L  G  I  A  R  G  L  E  Y  L  H  R  G  C  N  T  R  I  L  H  F  D  I  K  P  H  N  I  L  L  D  E  D  F  C  P  K  I  S  D  F  G  L  A  K  L  C  I  K  K  E  S  V  V  S  M  L  G  P  R  G  T  I  G  Y  I  A  P  E  I  V  C  R  N  L  G  G  V  S  H  K  S  D  V  Y  S  Y  G  M  M  V  L  E  M  V  G  G  R  K  N  V  D  V  G  V  D  R  T  S  E  I  Y  F  P  H  W  L  Y  Q  R  L  E  L  E  E  E  L  Q  L  I  G  I  M  N  E  E  E  N  E  C  A  R  K  M  V  I  A  S  L  W  C  I  Q  T  D  P  S  N  R  P  S  M  S  K  V  V  E  M  L  E  G  K  L  D  S  L  Q  M  P  P  K  P  Y  L  F  S  P  S  R  S  E  V  N  S  L  V  V  E  L  A  *  P  L  F  A  D  M  *  A  I  I  C  I  I  V  *  P  H  F  V  M  K  F  Q  L  N  S  C  C  F </first_frame>
            <second_frame>  K  K  D  P  T  M  F  A  N  *  V  G  Q  Y  Y  T  K  S  H  *  A  L  L  E  D  W  S  T  C  T  V  V  V  T  L  G  F  C  I  L  I  *  S  L  I  I  S  Y  L  M  R  I  F  V  Q  R  S  L  T  L  A  L  P  N  Y  A  *  K  R  R  V  S  C  Q  C  *  V  H  E  V  L  *  A  I  L  L  R  K  L  F  A  E  T  W  E  V  S  L  T  S  L  T  S  I  A  M  E  *  W  S  *  R  W  L  E  E  E  K  M  L  M  *  E  L  I  A  L  V  K  S  T  F  H  I  G  F  I  N  D  L  N  *  K  K  S  F  N  *  S  G  *  *  M  K  R  R  T  N  V  Q  E  R  W  *  *  R  V  Y  G  A  Y  R  L  I  P  Q  I  G  H  R  *  A  R  L  L  K  C  *  K  G  N  *  T  L  C  K  C  L  P  S  L  I  Y  F  L  P  Q  D  Q  R  *  I  H  *  *  *  N  W  P  S  L  Y  L  L  I  C  K  L  S  F  V  L  L  Y  S  L  T  L  L  *  N  F  S  *  I  V  V  V   </second_frame>
            <third_frame>   K  K  I  R  Q  C  S  P  I  K  L  A  N  I  I  Q  N  R  T  R  H  C  S  R  I  G  V  L  A  P  W  L  *  H  S  D  F  A  F  *  Y  K  A  S  *  Y  L  T  *  *  G  F  L  S  K  D  L  *  L  W  P  C  Q  T  M  H  K  K  G  E  C  R  V  N  V  R  S  T  R  Y  Y  R  L  Y  C  S  G  N  C  L  Q  K  L  G  R  C  L  S  Q  V  *  R  L  *  L  W  N  D  G  P  R  D  G  W  R  K  K  K  C  *  C  R  S  *  S  H  *  *  N  L  L  S  T  L  A  L  S  T  T  *  T  R  R  R  A  S  T  N  R  D  N  E  *  R  G  E  R  M  C  K  K  D  G  D  S  E  F  M  V  H  T  D  *  S  L  K  S  A  I  D  E  Q  G  C  *  N  V  R  R  E  T  R  L  F  A  N  A  S  Q  A  L  S  I  F  S  L  K  I  R  G  K  F  I  S  S  R  T  G  L  A  F  I  C  *  Y  V  S  Y  H  L  Y  Y  C  I  A  S  L  C  Y  E  I  S  A  K  *  L  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLe0028N03.1" strand="-"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134669" stop="134010"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKRSDNVRQLSWPILYKIALGIARGLEYLHRGCNTRILHFDIKPHNILLDEDFCPKISDFGLAKLCIKKESVVSMLGPRGTIGYIAPEIVCRNLGGVSHKSDVYSYGMMVLEMVGGRKNVDVGVDRTSEIYFPHWLYQRLELEEELQLIGIMNEEENECARKMVIASLWCIQTDPSNRPSMSKVVEMLEGKLDSLQMPPKPYLFSPSRSEVNSLVVELA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 267 chains have been computed
$ 
$ memory statistics:
$ 1179600 bytes spliced alignments in total
$ 144 spliced alignments have been stored
$ 8191 bytes was the average size of a spliced alignment
$ 43880 bytes predicted gene locations in total
$ 28 predicted gene locations have been stored
$ 1567 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 312 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:34:34
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