<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:34:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316708" ref_strand="+" ref_description="SGN-U316708        Tomato 200607 #1 [25 ESTs aligned] arabidopsis/peptide: | Symbol: None | phenylalanyl-tRNA synthetase class IIc family protein, similar to phenylalanine-tRNA synthetase (Homo sapiens) GI:3983103; contains Pfam profile PF01409: tRNA synthetases class II core domain (F) | chr3:21540708-21543549 REVERSE | Aliases: F9D24.50(evalue: 0, score=652) genbank/nr: phenylalanyl-tRNA(evalue: 0, score=671)">
      <seq>tctattgactcttgatagagtttcaataaccggcgccactcactagagaggctgagcaaatttgcaatggctctttcattagctaaatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccattttcttgttactggcgatgtgtaccgtagagattccattgactcaactcactatcctgtattccatcagatggagggtgtacgggtctttgctccaaatgattgggagggttcaggtactgatgcaacgtcacatgctgcggaagatcttaagaaatgtcttgagggtttggcacgacatctatttggtggggtggaaatgcgctgggttgacacttacttcccctttactaatccatcatttgaactggagatatattttcaggatcaatggatggaagttttgggttgtggagtgacagaacaagaaatattgaaaagaagcggtaaaacagacaatgttgcttgggcatttgggcttggattggagcgcttggctatggttttatttgatattccagatattcgactgttctggtcaactgatgagcggttcacttctcaattttctagcggccggctcgggttgaagtttaagccattttccaagtatccaccttgttataaagatatgagtttctggatcagtgattcatttaccgagaacaatctctgtgaagttgttagaggaattgctggagaccttgccgaggaggtgaaactgatagacaacttcaccaataagaaaggaatgacaagtcattgctatcggatagcttatcggtccatggaacgttcacttacagacgaggaaataaacgatctgcagtggaaagtgagagaacaggtggagaacaagttaaaggttgtcctaagatgagctattttcatttgtttgtttttttctgattttgtagtttacaacatgtagtttttacctgaattttgttttacatttatatgtcacttttttttgcaccatcttgattgtaataatagaatatgcttatttgctgtcatttggagttttgaggccaatatgttgaggcaatagatgaaggttgattgtattggaataattagtatcaaaagtgaaaccattctatttttggttcttccccctagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11311" stop="3906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11011" g_stop="10727" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="474" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7563" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="681" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7474" g_stop="7357" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="799" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6795" g_stop="6719" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="876" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6718" i_stop="6238" i_length="481">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6237" g_stop="6058" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="877" r_stop="1056" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6057" i_stop="5917" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5916" g_stop="5872" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1057" r_stop="1101" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5871" i_stop="5648" i_length="224">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="5647" g_stop="5543" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1102" r_stop="1206" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="5542" i_stop="4695" i_length="848">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4694" g_stop="4581" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1207" r_stop="1320" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="4580" i_stop="4504" i_length="77">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="4503" g_stop="4216" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1321" r_stop="1609" r_length="289" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1618" polyA_stop="1634"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-U316708" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1610</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11011" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7563"/>
          <exon e_start="7474" e_stop="7357"/>
          <exon e_start="6795" e_stop="6719"/>
          <exon e_start="6237" e_stop="6058"/>
          <exon e_start="5916" e_stop="5872"/>
          <exon e_start="5647" e_stop="5543"/>
          <exon e_start="4694" e_stop="4581"/>
          <exon e_start="4503" e_stop="4216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTGACTCTTGATAGAGTTTCAATAACCGGCGCCACTCACTAGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAGGTTCTCTACCTGCAAACATATTTTTCTCTTGACATTGCAGATTGTTGTGTGGATTTATCCTTTAATGGTTTTCTTCCATACTTTGTAGATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTGGTATAAATCTGTCTCATCTAAATGAGTCATTATGATGCCAATAATTTACCATATAATTTATGGCATTGCTAATCAATAACGAGTCTTGGTGATTTGACTATGATTTAGTGATTTACCATATTCATATCTATAGGTGACTTCCTTACATCATTAGGAGTTGGTCCTAGAGGCCACTTAGTAATTGTTCATATCATCTTTAGAAGTTTAGTGCGGTGATGGTTGTACATTGTATAAATCTTTCTTGCTTCTTTCAATTTTCTTTAAAGAATAGGTGTCTCAATTAGAAGTTAGAACCTGATTTTAGGGCAGATAGTAATAGAAGGCTGGACCAGAGTGCAGACTGCTAAATAATAGGTTGAAGTTACTTTAAGAAGTTAAGAATGCCTATCGAAGTTCTTATCTGATGGTATAATGTAGTTGATGGCTCCCCTTATATTCCGGTCCATCGTGTATAGATCTTTTAACTTGTTCTCTTCTTCAAAAACTATCTTTCTACTAGAAGATTTACTTTTTCGTGAGAAAGATTTATGAATCTCCAGCCTAATCTTTCTAATTCTTCAGGTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAGGTATACTTTGCATTAGTTTATGACAGACTTATACATCCTTTTGTTTCTTCTATTTCCTCCTCTCCAGATGTCGAAGTCCAGAATACTGTGCGAGTTAGTTTTGTGGTTTCATCAGATTGTTCAATAAGATACTATCAAATGTGTAGCAGAGTAAGATTGTATCACCTACTTAAACAATTTCTTTTACTGTGGCTCAAGAGTGTCAAGCATGCGTTAGACGCTCACATCATATGCCAACCTCTAATGTTCAGTCAATAAGTGGATTTCTTCGGGAAAAACAGAAAGCAGGAAGATTAAGGATGTGTGTCGGCAAGGACTATAGGGAACAATAGCCAAACATTCAGGAAGAAGATAATATAATAACAAAAGCAGTAATCATCATTTCTTGGATTAGAGCGCTTGGCTATGGTTTTATTTGATACACCATATAATAATAACTATGCCGTATATTATGTTCTACTCAATGTTAAGTCCTTTACAGGATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAGTAATTTCTTCATCTTTCCTGTTTTCATTTTTCACCTTGTTCTGAATTTTCAGCTACTTCTTCCCACCACTCTCTCCCCTTTTTTTATCACCAGTTCAGATTTTGCTAGCTTTCGGTAACATTTTCTTGATCATGATGTAGTTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAGGTAGGACTTGTTTACTAATGTTTATCTTATGTAATTTTCAAGCATTTGAATAATCCAACTCTTATATGTGTTTTGAGCATTTCATTTTTCATTAAGTGCTTAACATTTTGTTTGAAGAATGCACTCAAGGGGTCCATTTGAGTCTTTGACTGCATAATCATGTTTGTGGATCTTTTAGTGTTTATGATCTTGTTTAAAAGACTCAAACTCCTTAATTTTTGCAGTATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAGGTATGTCCACGTGATGGTTCTACTTACCGCCAAATTCAACTAATAGATATGAGGGGCCCTTCATTAATGTGTTGTGTTACAAGTTTCTGGTGGAATAGATGAGATGCACCTCAAGCTGGTTCGGACACTATTGTTGAAAAGAAAAGTTAACTTTTAATCTATTTTGTTGGGGACACATCTACTGTTAGGATTGTATTGAGGGGCATTCACACTTGTGCAATGATCATTAAACATTCTGCTTACAGGAGCTCCATACCTCCACAGAAATGGTGATTGCTGGCCCCAACACCACAGTTATTACAAAAAATAATCAAGAGATAAAGGATCTAGTTTTCGCTTTGAACTTCTCTCGTTTAATGGTCCATGGATATACCCCAATATTTGAATTCTTGAGTGTCTTTTCCACATTATTCTGCTAGTTTTCCCAGTTATTTGAAATGTTTCCTCTTACTCGACCAGTTTTATGGGCCTATTCATTGGTATCATTAGTTCATTTCTCCAAAGTAAGCTATTCCGAGTCTTGCACTTTATCTTAAGATTTATGTTAAGTGATTTCCATGTCATACCCTGGGGTTAGAGCTGAGTGACGTTTTTCCTAGTGAAGCCAAACACCACAGATTTGTACAATTTTACAGTAGGTTTATAGGGTCGTGTTTGTAACATGAGCTTGTGTGGTAACTAACTCTGATATATAAGTGGAGAAGGGTAGAGAGGCATACCCACTCATCCTCTGACCCAAAGAGTCGGCTCTAGACTGATTTCTCAGTCATCATGTAGTTCGTGTAGTGACTCGTGTTAGTAACATGAATTCGTCTAGTGACTGTTGCTTCCGTTTCTACTACTGTCAGGTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCACTTACAGACGAGGAAATAAACGATCTGCAGGTAACCCCTCTTTCAAATGAACCTCTGCCATCTTTCTCCTACCATTACTAAATGTCTTTTTGTGTATTTAAATGCAGTGGAAAGTGAGAGAACAGGTGGAGAACAAGTTAAAGGTTGTCCTAAGATGAGCTATTTTCATTTGTTTGTTTTTTTCTGATTTTGTAGTTTACAACATGTAGTTTTTACCTGAATTTTGTTTTACATTTATATGTCACTTTTTTTTGCACCATCTTGATTGTAATAATAGAATATGCTTATTTGCTGTCATTTGGAGTTTTGAGGCCAATATGTTGAGGCAATAGATGAAGGTTGATTGTATTGGAATAATTAGTATCAAAAGTGAAACCATTCTA-TTTTGGTTCTTC</genome_strand>
        <mrna_strand>TCTATTGACTCTTGATAGAGTTTCAATAACCGGCGCCACTCACTAGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG........................................................................................ATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA.............................................................................................................................................TTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAG................................................................................................................................................................................................................................TATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCACTTACAGACGAGGAAATAAACGATCTGCAG.............................................................................TGGAAAGTGAGAGAACAGGTGGAGAACAAGTTAAAGGTTGTCCTAAGATGAGCTATTTTCATTTGTTTGTTTTTTTCTGATTTTGTAGTTTACAACATGTAGTTTTTACCTGAATTTTGTTTTACATTTATATGTCACTTTTTTTTGCACCATCTTGATTGTAATAATAGAATATGCTTATTTGCTGTCATTTGGAGTTTTGAGGCCAATATGTTGAGGCAATAGATGAAGGTTGATTGTATTGGAATAATTAGTATCAAAAGTGAAACCATTCTATTTTTGGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335795" ref_strand="+" ref_description="SGN-U335795        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | phenylalanyl-tRNA synthetase class IIc family protein, similar to phenylalanine-tRNA synthetase (Homo sapiens) GI:3983103; contains Pfam profile PF01409: tRNA synthetases class II core domain (F) | chr3:21540708-21543549 REVERSE | Aliases: F9D24.50(evalue: 5e-29, score=124) genbank/nr: gi|18410886|ref|NP_567061.1| phenylalanine-tRNA synthetase-related protein [Arabidopsis thaliana] gi|13877969|gb|AAK44062.1| putative phenylalanine-tRNA synthetase [Arabidopsis thaliana] gi|17104697|gb|AAL34237.1| putative phenylalanine-tRNA synthetase [Arabidopsis thaliana](evalue: 4e-27, score=124)">
      <seq>agaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacaggttggtccaagaaggttaaggaatcttttttttttgcactcttcatgattttgttttttgtaattatatttgctttctgtgttcgaattatgttcctttctccattgatcaagcatatttctttattcataatttcatatagctggcattaacatctgtttaatttgcagtgaagttagggtcctaacaaaccattcattttggccttttcatggggttcctaatattctgttgagtaatgaattatactcttctactcctgaaaaccttattctattagctctaaggtcaacaatatttattccccatcaattatgagtcaggcatgtcaaccattcagccactaacctatacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11089" stop="7813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10789" g_stop="10727" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8113" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="611" r_length="548" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-U335795" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10789" e_stop="10727"/>
          <exon e_start="8659" e_stop="8113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATA-TTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGA</genome_strand>
        <mrna_strand>AGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTAATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315009" ref_strand="+" ref_description="SGN-U315009        Tomato 200607 #1 [49 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:17960020-17962875 REVERSE | Aliases: None(evalue: 2e-158, score=555) genbank/nr: OSJNBa0014K14.16(evalue: 6e-163, score=577)">
      <seq>ctgtgattgacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgttatgcaacaacaagcagtcaacttccttctcgtaaaggtgatttctcatcaaacagcaatgagtatggtgttcaacccggcatccaagctgatagagtgcagaggactcaaatacccgagaatcctgttgaggtattgatacctgaggtgtatgacagattttctggtgagggtaagaaaggaaatttctcaatggcctggtctcggaaattgagagtcaagattactggaaaagatggatttgaaaaactagatatcagaattcctgctggatttttggaaggaatcacaaacatagttccagctttggtaggtgtaaacatcaagtctctgttggatgaggcaactttagaagagggtgggaaacaattgttggattttcaggatacaatgggtgacaggatacaagttattttggagtaaaggagatcttgcttcttattcctgtattttgatgaatgaatattatatggcaaatgatgtacaatccctagcttagcttggcccctcagatttggtctaaatggaagagcataatgcatatgaaataatgtgtgggttaagcgcatgttacaaaagagtatggtattgttttctgcatgtaatcccctaaaatattgatcaataatataatttagttaaaataaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12011" stop="19852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12311" g_stop="12686" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14042" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="588" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="870" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="993" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17594" g_stop="17744" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="994" r_stop="1144" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17869" g_stop="18098" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1145" r_stop="1374" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18099" i_stop="19070" i_length="972">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19071" g_stop="19107" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1375" r_stop="1411" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19211" g_stop="19553" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1412" r_stop="1754" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1755" polyA_stop="1772"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-U315009" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1754</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12311" e_stop="12686"/>
          <exon e_start="13831" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17744"/>
          <exon e_start="17869" e_stop="18098"/>
          <exon e_start="19071" e_stop="19107"/>
          <exon e_start="19211" e_stop="19553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAGGTGAGCAATGCCGTCAATTTAGGCTTTCTAATTATTTGGAAAGACAATTTGGATTCAGAACTTGTCAGATCCTTTTAGTACTGATCCAAAGACATTTACCTTGCTTTCACATTTTAAATATCAGGTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCTGTAAGTTATACTCCTCAAGCTGTTTTTTGTCTTTCAGCTATTACATATGTGGAATTAGTGAGCTAAAAACTATTTACAATAAATGTTTTAAGAGACTATTTAACAGTTCATGATGCATGACGAAGGGTTCACACTGTCATTGACATAGTTGATATTGTCTTGAGGTTTAACAATGAATATTTGAGAGCAAGTCTTAATTTTTTTTATAGATATCAGTTTTGGTAAATCATTTTGAAGCCTTGCAATGCTAGCACCGCACCCACAGTCCGCTTATTTTTTTTCTTTTGTAAAGGAAGGCTAACATCCCCACTTAAATTGTTCTGCTGGACTCCAGCAAGGGCTTTTATGATAGTAACAGGCTAGAGATGTTGACTCTTTGGTGGGCCAAGAATTAAGTAAAATGCCTCAGATTTAAGGGATGCCTTCTTATCTATGTTAGAAGCTATGTGGTAAGAGACTCAGTTTTGATATCAAATATACTGAGTTCTATATTCCAAGTTTCAATATCTTAACAATTATCAAGATTTAAATTTTTAAGAGAGAATAATTCCTTGTGTAGTTTTGAATAACTGATGTTTTGGTAATTGGTGCCAAACTATGTTGCAACCATTTTGTTGGAGCCGTTCTTTTTCTTGGGTATAATCACTAGTTCAAAAACAGTTCGGAATCTTTTTGATCTTACATTAATGTTGTGATTCTTGCGTATCCACAAGAGAATATATGAGGTGCCTGTTTAATTCAATTTAGAGTTGTATTTGTGATATCTTTAGCATTATGCACTTTCTTAAGGTTCACGCGTGTGCATGATCAATCTCTAGTTTGTCTTGGTTGTGTAACATAGTTTGAACTTGGTTTTTTATGAATATGGAACCTCATCCTCTATATCTTTGTGCGCGTGAAACTGTCTGCACATCATTATCTGTTGCATCAAGTTTATTAGTTTTTCCAATATTTTGCGTCTCTTTTCCTCAGGCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAGGTATGTTTGTTATTTTAAGTAGTTGGTAATGTTTTTAAAAAGTCAGATCTTATGAGCACATTTCTGAAAAGTTCAATACTGTGTCATTTTTTTTTCTATACAGCTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAATAT</genome_strand>
        <mrna_strand>CTGTGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAG............................................................................................................................GTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAG.......................................................................................................CTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325563" ref_strand="+" ref_description="SGN-U325563        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | LUC7 N_terminus domain-containing protein, contains Pfam domain PF03194: Protein of unknown function, DUF259 | chr5:5749764-5753644 FORWARD | Aliases: K3M16.10, K3M16_10(evalue: 2e-101, score=365) genbank/nr: gi|18418301|ref|NP_568347.1| expressed protein [Arabidopsis thaliana] gi|15450599|gb|AAK96571.1| AT5g17440/K3M16_10 [Arabidopsis thaliana] gi|17380624|gb|AAL36075.1| AT5g17440/K3M16_10 [Arabidopsis thaliana](evalue: 1e-99, score=365)">
      <seq>gcacgagaaaaaacccttacatagatagagagcaaacctaagcttgaactcagcagcgaattttaagcgttcatcgtcaatggacgccataaggaagcaactggatgtgttaatgggagctaaccggaacggcgatgtgacggaggttgatcggaagtactacgaccgtgaagtttgccgtctttatctctccggtctctgccctcacgaactctttcagctcactaaaatggatatgggggcatgccctaaggtgcattcgttgcctctaagaaaagaatatgaagaagcaaaggcaaaaggtcaggataactatgacagggacttggaggatttaatagacaggctgattgttgagtgtgacaggaaaataactagagcccttaaaaggcttgatgaggaggatgccaaagctgctattgccatatcagtatctgaagttaccctgactccggagattgatgagttgtcaaagcaaattaaagagaagctgaaagaagctgacatacatgatcttgaaggtaagacagatatgaaaattcgagctttggaagaagttgaagaacttcgaactaagagagcagacaaacagtcaatgcttcttttggatgcattcaacaaggatcgagcatctttgccgcagccacttcagaatgctccacagttggcacccttgcctgcatctactccagatcctcgcatacaggaaatgataaatgagaaactgaagaaagcagaagatcttggtgaacaaggaatggttgatgaagctcagaaagcattggaagaggcggaagctcttaagaagctacctgtgaggcaagaacctgttcaagattcctcaaagtacactgcagttgatgtgcggattactgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="20207" stop="26913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20507" g_stop="20732" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20733" i_stop="22343" i_length="1611">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22344" g_stop="22396" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="279" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22397" i_stop="24011" i_length="1615">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24012" g_stop="24180" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="448" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24181" i_stop="24303" i_length="123">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24304" g_stop="24367" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="512" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24368" i_stop="25106" i_length="739">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25107" g_stop="25186" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="592" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25187" i_stop="25325" i_length="139">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25326" g_stop="25479" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="746" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25480" i_stop="26321" i_length="842">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26322" g_stop="26383" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="808" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26384" i_stop="26550" i_length="167">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.744" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26551" g_stop="26613" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="871" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-U325563" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20507" e_stop="20732"/>
          <exon e_start="22344" e_stop="22396"/>
          <exon e_start="24012" e_stop="24180"/>
          <exon e_start="24304" e_stop="24367"/>
          <exon e_start="25107" e_stop="25186"/>
          <exon e_start="25326" e_stop="25479"/>
          <exon e_start="26322" e_stop="26383"/>
          <exon e_start="26551" e_stop="26613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGAAAAAAACCCTTACATAGATAGAGAGCAAACCTAAGCTTGAACTCAGCAGCGAATTTTAAGCGTTCATCGTCAATGGACGCCATAAGGAAGCAACTGGATGTGTTAATGGGAGCTAACCGGAACGGCGATGTGACGGAGGTTGATCGGAAGTACTACGACCGTGAAGTTTGCCGTCTTTATCTCTCCGGTCTCTGCCCTCACGAACTCTTTCAGCTCACTGTACGTAACATTTAACACCGCTCTCTCTATTTCTTCGTTTCCTTGCTTCCTTGTGTTTGTGTTTGTATTTGAATCCCTAGGTTATTTACTGTTGTTTTTGGATAATCGAAAAAAATTCATTTAGGAGTCCAAAAATAGTTGAAGCTTTAGATTTAAATAGTTTTTGTATACATAGATCTTAATTTTGTGCTATGAAGTGTACTCCGGCTATTACTGGGCAGGGGAGAGTGAAATGCGTACACAAATGCCATAGAGCTCTCTCTATCTATATGTTTACATGTTTCCTCGTATGTGGGTGTTTGTATTTGAATCCTTAGGTTGTTTGTTTTTTTGGTAACTGAAAAAATTCATTTCGGTTGGTGAGAATTAGTTGGAGGCTTAGATTTAAATATTTTTGCTCCATAGAGTTCTTACTTGGTGCAATGAAGTGTTCTCGGACTTGTGGGGTAGGGGAGTGAATCTATACTCTGTGCAGCTGTTTCTATGCCTAGAATTTGGTGTGCTTAGAGATATCAAAGGAGAACCTCTACTGTGCATCTATGTTAGTTATTTGTTGACTATGTGTATAAGTAGATTGTGCATTTTTGGTGCTTTTTGAAGTTGAAACAACTATTTTGTTCTATAACTGCTGAAATGAAATTATAATAAGAAGTTTTGGATGGAAAACTTTATCCAAAGATGGGGGTTGAGAACACTCTGCTTTTGGAACAAAATTGGAGGAAACCCTGGTGATTCAATTCCTATAATTTGCCCACTTGGCACCGACTGCTATGTGTTATTTTCTTTTGCCTCAAGATTTTTGCCGTTAGAATCACCCTTTAGTAGTCAACTGTGTAAGAAACAATCCTTTCTTGGAATTTATGGATTCCATATGGAAAGATGTGGGAATTCTGTGACCCCTATAGTAGCTTGTGGTTGAAGACATCATTTAGAATGTTCTCATTCAGTGCTCAGACTACTACGGGTCATCTTACTCTGTCAATGCTTGCCTGTATAGAAGCGCCATAAATTTGTGGAATTCATCCATCTCTCAGTCTTGCAAGTTTCTTTTGAAGACTAAGTCTATGAAATTCTTCACACTTGCATCTCTTACACCTGGGCGACTAGCATTAGTCTATGGCTCAAAATGTAGAACCTTGAGGAGAGCACTTCTTGGACTTCCTTTATGTCACCACCCATACCCTCATAAGCTATCCCTGTTCTTGATTCCTACTTTGATAAATATTTGCTTACAATTATGAAGATGTGAACCAGTGAAATACAAGTTGATAACAGTAATGCTAAATACTTGTAGGAAAAAAATGATAAATATTGCTCCTCTAGTATCAAGCTTTATTTAATTTAATGGGAATCATCTTTATCTAGTGAAATTAGTCAATTCTTATTGATAAGGTGAAACCAGTCAGCATCAAAGAGTCAACTCACATGCTATCCATATTAGATCTTTGAATTTAAAATATCGACTATTGAAAATGCTTGTTTGGGTGGGTAGGGGGGGGGGTTGTTGGAGTGGTTCAGTTTTGTCCCAGGTGTCCTCCGTCTTCATTTCGAGTTTAATTTTATTAATGTTTTGCACTGATTTTTTGTTTTAATTTCTTTTCTGTTATGCAGAAAATGGATATGGGGGCATGCCCTAAGGTGCATTCGTTGCCTCTAAGAAAAGAGTATCCTTCTTTGATGTGTGTATTCTGATTTTCAAAGTGTTTCATACTCATGTTTTGTGCCCTAATAAATTGGAGAATTAATATCACGACAAGGCGTTTTGGGCTATTCAAGTAAAAGTTTTCTTACGACTTTACATATGCTAGATAGGGTGGCTGTTGTCACAGGGTGTTTAACTAGATTATCTGTTGTCTTGAAGATTGTAGAAGTTGTTGCAGTATTAGTGGGAATTGAGACAGATTTCTCATTGTAAAATATTATTAGGGACTGACAGGCTTCCTAGTAGCTGGAAGTGAGTGATCAACTTGAATCCTGTTAAATGTTATGGTTGTTTTTAACAAGGATATTAATCTGAAGATCATTGATCTCCTCCTCCTCAAACTCCTGTCAGTCCTACTAGGGTCGTCTAAACAAAATTGAGGGCCTAAAGCCGAACTTCTTAGAGGCCTTAATTTATATTTTCTACTTGACATGTAAATCGAATAATACTCCCTCTTTTTAAAAAAAGAATGACCTCATTTTCTTTTTAATCTTTTTCAAAAAGAATGATCCTTTCCTTTTTTGGCAAAACTTTAACTTTAACTTTCTACCTGGCATGATTAAGGCCACAAGATTAAAGGATATTTTGGTACATTTGATAATTTAGAACCAGAAGATCAAAAAGTCTTCTTTATTTTCTTAAACTTCGTTCCAAGTCAATCTAGGTCATTCTTTTTTAAACAGAGGGAGTAATAACATACTCAATGTAATTTTACAAGTGACTGGAGAGGGTATGATGTACACAAACATTATGAAGCAAGAATGTGAACAATGCAAATTTTTAATGAATGAAATATAATATAAAATCAAGATAATATAACCTGGCTCTTGAATTTGAGAAGTTGATATATTGATATCAAAATAGTGTTGCTCTGAATTTAGTAAGTTCATATGATGATATTGAAACAGCGTTTATTTGTTGCAGTGTTTGAAATTTGAAGAGAAAGCGACAAAAAAATCTGATCTTTTTTATAAACAGACAACATTAGATTTTGCATAATGGAGAAGGTTCGACCGTTCAATAGATCTCGGGATATTCAATAATAAGCGAATAAGAATAGTGAGATGGGAATGAAAAAGGTAATTATTAATGTTTCCTTCTCAAAAAGAAGAAGGGAATGTTATAAGTAAATATAAGAATAATAATGTGGGTGCATGTTAATCGTTGGGATATAAATGATGGAACGAAATAGGTCACTACGTAAGAAAGGATATTACAATTACCTAAATCTATTTCATTTCTTAATAATTACATCGATCCCTATGTTAAATAAGGTAAGAAAATTGTTATATTTCTGGCCAAAAAATTCGTTTCAAAGTTATTGTGTGTATATATAGAATGTTAGGTAAAAGTTGGGGACCGAAAGAAGTTGGGGCCCAAAGCCGTTGCTTAGTGACCTTATTGTCGAGCCGGCCCTGAATTCTACTGAAACTACTGAAAAAAGAGGGAAATCTACAGGAGATATCATCATCAAAATAAACAAATAAATGGACAAGAGGTGTTGTATTCTTTGGTCGATTTGCTTCTTGAAACAGTAAAAATCTAGTACCATTTGTCTTGTCTTAACCTTGTCTTAGATATGAAGAAGCAAAGGCAAAAGGTCAGGATAACTATGACAGGGACTTGGAGGATTTAATAGACAGGCTGATTGTTGAGTGTGACAGGAAAATAACTAGAGCCCTTAAAAGGCTTGATGAGGAGGATGCCAAAGCTGCTATTGCCATATCAGTATCTGAAGTTACCCTGGTAATTGTCAAGTTTGGGCTCTAAGCTCATTATTTTCTTTTGTTGGTCACTGGTACTTCCTCTTTGCCCTTCCTCCGTATACTTGTCATTGTTACAATTGTTTTCAACTTGTTTAAATTATAGACTCCGGAGATTGATGAGTTGTCAAAGCAAATTAAAGAGAAGCTGAAAGAAGCTGACATACATGGTAAGTTCTTTTAGATATTGCTGATTACCTGAATGCCACGTGAAAGTACCTTTTACAAGTCTTGCAAGCATGACTATGTAGTCTTGATTGGTTATTTCCCATTGTTAGGTTGCTCATATTTTACTTTTTTTGGTTGGTTGCATTTATACATAAATGACGAGTCAGCTTGTCAATTTATATCTCTCTTTGAGCATACAGAGGTTGAGGGAGTAAATTATACTTAATGATTGCTGGTGATATTATTCATCGATTTCTCAAAAAAAAATATTATGAGATTCATCATTACTTTGTCTCATAATTTTAAGCTGGAATGAGTTTTAGTTTCATTCTTGGATCTAGGTTGGCATCAACTAACATATGTGTCATAAGTAAATTTGATCATACTGTGATTTCAGAGTAACAAAATGTGAAGTGCTAATTGCACCCAAGGGTGTGGCCTAGCGGTCAATGTGAAGTGGTTGATAACCTGATGTCTCAGATTCATAACTCTACTGAAACAAAAAACACTAAGTGATTCTTCCCATCTTTCATAGACTATACCTGGTACTTGTTGTTGGTGGTAGGTGGCATGTTTGTGGAATAAGTCAAGGTGTGCGAAAGCTGGTTAGGACACCACTGTTATCAAAAATAAAAAGAAAATGTGAAGTGCTATTATTTTGTGGAATTTTCCTTCTGATGAAAAAACTCAATGTTTCTTTTTGAGTTGGCCAAGTTCTTGAATGATCTAACTTTTCTGCAGATCTTGAAGGTAAGACAGATATGAAAATTCGAGCTTTGGAAGAAGTTGAAGAACTTCGAACTAAGAGAGCAGACAAACAGGTATCAAAAGAACTTAGAGATGTTGAATTTTAGTTTGCCATTCAGTCAACTTGGCAAACATTAATGACATTGCTATACTTAACAGTTCACTCGGTAGTGTGTATTGTCAGAACTTATATTTTCTTATTTCGAATGGCAGTCAATGCTTCTTTTGGATGCATTCAACAAGGATCGAGCATCTTTGCCGCAGCCACTTCAGAATGCTCCACAGTTGGCACCCTTGCCTGCATCTACTCCAGATCCTCGCATACAGGAAATGATAAATGAGAAACTGAAGAAAGCAGAAGATCTTGGTATGTTGAAATCTAAATATTTATAAATTGGCATTGCTTACAACATCCTCCACTTCTTCTACAAGACTAGAAATCGCTTTTTGATATGCTCTATTCTGTCGACTCTCTCTTGGAGTAGTACAATCTCATTATTTTGGTATATGTCCATGCACTTGCGTACGGGCAGTTGAAAAGGAAAGTACCATCAGGAAACACTAGTGAGTAATTCTGGGTTTCAAAATGCTCCCTTGAGATTGTTATTGGTAAATACATGGGAAATGGCAGGGTATTATGTGACTGAAGTGGGAGATACTGTTTCGATTTTGATAATATGAAAAAAGATATCTTTTATTGCTGGACAATTGTTGTTCTACCTTGAGATCAGAACAGCCATATTCTGCTATAGAAGTTTGAAATAAATCTATGCTCATTTCAATTCATTTTGTTCATATTTATTTTATTCAATAAACCATCACCAAAGGTTGTAAGCCCTGGTGTGAAGTGTTGAGCTTGACCTCTAAAGATCATTATCAAATTTGTATGTGAGATTTTGTTACTCTGATCTCAATTTATGATGAAAATGCATTACTGGGAGGCTAAGGATAATTATCTGCACATATTCTCTGATCAGTAGTGAAAATTTTCCTAGAAGTGATTTAAGCAAGATGGAAGCATTTCTGTGTTTTAAACCTCAAATGAAGCTAAATGCCTGTTAATACACCTTGTACAGTTTCTTCTACTATCTTGTTGCACTTGCTTTTTGTGAATTGATCTAATATATAGAAAAGAGACTGTGTGGCAGGGTTGCTTTTGCTCAATGTTTTTTTTTAATCGTATACCTTTCCTTTTACCCTGGTATCTAGGTGAACAAGGAATGGTTGATGAAGCTCAGAAAGCATTGGAAGAGGCGGAAGCTCTTAAGAAGGTTGCCAAACAGTTTTGTTTGTACTTCAATTGTGCTTGATTATAACTTTTTAGTGTTCAAATCGCCCTTCTTTCCTTTCTCTATTTTTTTTGGCTCAAAACACTTCCCCTTCCAGTTCGACTACATTTAACATTTCTCTCCTTGATATGCCTGTCTACTTCATTCAGCTACCTGTGAGGCAAGAACCTGTTCAGGATTCCTCAAAGTACACTGCAGTTGATGTGCGGATT</genome_strand>
        <mrna_strand>GCACGAGAAAAAACCCTTACATAGATAGAGAGCAAACCTAAGCTTGAACTCAGCAGCGAATTTTAAGCGTTCATCGTCAATGGACGCCATAAGGAAGCAACTGGATGTGTTAATGGGAGCTAACCGGAACGGCGATGTGACGGAGGTTGATCGGAAGTACTACGACCGTGAAGTTTGCCGTCTTTATCTCTCCGGTCTCTGCCCTCACGAACTCTTTCAGCTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGATATGGGGGCATGCCCTAAGGTGCATTCGTTGCCTCTAAGAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGAAGCAAAGGCAAAAGGTCAGGATAACTATGACAGGGACTTGGAGGATTTAATAGACAGGCTGATTGTTGAGTGTGACAGGAAAATAACTAGAGCCCTTAAAAGGCTTGATGAGGAGGATGCCAAAGCTGCTATTGCCATATCAGTATCTGAAGTTACCCTG...........................................................................................................................ACTCCGGAGATTGATGAGTTGTCAAAGCAAATTAAAGAGAAGCTGAAAGAAGCTGACATACATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGAAGGTAAGACAGATATGAAAATTCGAGCTTTGGAAGAAGTTGAAGAACTTCGAACTAAGAGAGCAGACAAACAG...........................................................................................................................................TCAATGCTTCTTTTGGATGCATTCAACAAGGATCGAGCATCTTTGCCGCAGCCACTTCAGAATGCTCCACAGTTGGCACCCTTGCCTGCATCTACTCCAGATCCTCGCATACAGGAAATGATAAATGAGAAACTGAAGAAAGCAGAAGATCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGGAATGGTTGATGAAGCTCAGAAAGCATTGGAAGAGGCGGAAGCTCTTAAGAAG.......................................................................................................................................................................CTACCTGTGAGGCAAGAACCTGTTCAAGATTCCTCAAAGTACACTGCAGTTGATGTGCGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317261" ref_strand="+" ref_description="SGN-U317261        Tomato 200607 #1 [21 ESTs aligned] arabidopsis/peptide: | Symbol: None | biotin carboxyl carrier protein 1 (BCCP1), identical to biotin carboxyl carrier protein of acetyl-CoA carboxylase precursor (Arabidopsis thaliana) gi:9759121:dbj:BAB09606 | chr5:5360812-5363129 REVERSE | Aliases: MQK4.12, MQK4_12(evalue: 5e-41, score=165) genbank/nr: gi|29169309|gb|AAO66472.1| biotin carboxylase carrier protein [Lycopersicon esculentum](evalue: 2e-90, score=335)">
      <seq>ctctccttgtaccggcgagcaaaatgacgacgtcgttcggaactacggcgacaccggcagcatctgcttcaccggcggtatttccggccaaaaatgccccgaaatccttgactttgttacctttctgccatcatcgccattacaatcatttgcgttccaaattatctatcacgcccaaactccgattctcctgtaagggtctacaatctaattggaatcattcagtcgtaactagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggtatcagaggaagcaatatctaactttattagccaagtttcaagccttgtcaagctagttgattctagggatgttgtggagctgcagttaaaacaatttgattgtgaaattctaatccgtaagaaggaggcactaccacaaccacctgctcctgttcctgcacaagctccatttatacaatcatatcatgtaccatctatacaatctaatgcatctcctccacctgcacctgcaccttcacctgctccaattcaaacccctgcaccgtctccagctgcagcaaagtcagctgattcatctcttcctccgctcaaatccccaatggcagggacattctatagaagtccagcacccggtgaaccagcatttgtgaaggtcggagacaaagtgcagaagggtcaagttctttgcattattgaagcgatgaagttgatgaacgaaatagaggctgatcgatcaggaaccatcgttgaggttgttgctgaagatggaaaacctgtcagtgttgatactcctctgtttgtgatcaagccatagaaccgttcgagtaagacccgggaaacaatatgcagaggaacttggcaagtgtttgtttaccttgggcttatgatattttgcagtatttcagtttcagtgagtatgtttgcaatgactggtagcgtgatggaaattggaatagacgattctggttaaaactcattaggagagtttagtgtttaatctgaggtattctttggcattttattgtgggattctagcttactcattttttcctttttcagtttgacatatttatgtgaggtttgtacctcgataacaatctcatcgcattatgataaggattgtatgcagttttgattatttagcccctggccaatacgatacttataattgctattttatgtgaaaaaaaaaagtttcaatttactagacgcaacataacttggtactaacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="29707" stop="85316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30007" g_stop="30203" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="251" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="397" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32621" g_stop="32942" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="719" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32943" i_stop="33068" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33069" g_stop="33140" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="791" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33141" i_stop="35369" i_length="2229">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35370" g_stop="35435" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="857" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="35519" g_stop="35951" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="1295" r_length="438" r_score="0.968"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="35952" i_stop="36198" i_length="247">
            <donor d_prob="0.000" d_score="0.69"/>
            <acceptor a_prob="0.705" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36199" g_stop="36220" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1296" r_stop="1317" r_length="22" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-U317261" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1312</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30007" e_stop="30203"/>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32942"/>
          <exon e_start="33069" e_stop="33140"/>
          <exon e_start="35370" e_stop="35435"/>
          <exon e_start="35519" e_stop="35951"/>
          <exon e_start="36199" e_stop="36220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCTTGTACCGGCGAGCAAAATGACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAGGTAATACTATTCCTCTGCACTTTTGCTTTCTCAGTTTACTTTCCTTCAATTAATTTTGTGTTTACTGCCCTCTCTGTATGAAATATGCATATTATTTAGATTCAATGAGTTCGGAATGAATACGATTTGTTAAATGTGTACATTTTGGAAACAAATGCACTTATATATCTACCTAGCTCACTCTAGGTGCTACCGTGGTAGCATAAATCAAGCCATGTTTTTTGAGCTAAGTGTAATCCCACGAGTTTGGAGATGGTAGGATAGGAAAGGATGTATGCAGACTTTTAACTTCTACAGTTGCAGGGTGGAGAGGTTGTTTCTGATAGTCCCTCGGCTCAAAAGAAGTGTAAACAAATCATGATAGAATGGAAAATATTGACAAAAAAATTAGCATGATAAACAGATCAAATGAAGCAACATGTAATTGTGAGAATTGAAGAACGCATTACCAAACAGACTAAGAAAAGAAAAAATAAATAAATAAATTTGTGATTGATGTTATAAACTTATTTGTATATATTTTATTTATGCAAGTAGATAATGGTATGTCATGCATGATCTATTTTTATTTTGTTATATGGAGTAGGATTCACAATTTTTATCTGGGATGCAGATCACTACTGCAAATACTAGTGTATATGTACTGGAACAACATCTATAACGTCTTAATCATGAATTAGTTTGGACTCCGTTATATTTAGATATGATAAAACTACCGTTCAGTCTAAAACTAGTTAGGGTCGACATATTTTTAGAAATGATTTTCAGCTATACCATGTAGTTTGAATTGAGGTTACTGCGAAAGGATGTATTCGCCAATGGTTTTATTTCTATTCTTAGTATAATTTTATATCTTTTGGGTATTCTTTTTCTTGTGAAACTTGATATGAGAACACACGTAAAAGAAGTGAATATCTCCCAGATGAAATTGAAGCTGGAAATGGAAAAGACACCTTATATGTGATCTTAAATGCAACGAACGAAGTTGAGCTAATTAATTGGTGTAAAAGTTTCATCTTTGGTATTAATGGATGTTCAATTTTTAAAAAATGGTTTCATCCTTTTTATTTGTTCTGCTATTCTCTTTTCTGCTTTGCCATTAATATTGAGTAGAAAAGAGTATCCAGAGACCTTTGTTAATGATTTTTTCTGGGTCAGGGAAATTGACAAAGTAAACAACAACAAAAGTTATTTTAGTATTGTTTCATATTCTGAGAAAACCTAAAATATGTTGGAAACAATAAATTAACTGAAGACCTGCACTTGTATTAACATTGTCATTGTGTCCTACATACGCACAAGCATAATCTTTCTTACATATGTACTTGTGATTAAACCAAAACAATGTGTTCAGTTGAATCCATTGAACCCACTCTTGATCTGCCTCTGTGATGTAGTATCTTCTTTCCTCAACAGGTTTTCTGTTACTATGAAGACCCTATAGTTTCATTGGCAATCTTGTATCAATTGTAGTGATTTAATTCATTTGTTGAACTTTTTTTCAGATCAGCAAAAGGTATAATTTTGTTAATTAAACAACAATAAGACTTTGTTGAATAAGTACAACAAAAAGCAAATAATACATTCCCTTAATTCTGAATAAATATATTCATTTGTCAAACTTGAAAGAACCCTTCACAGAGCACTTTTAGTTTAAAGGAAAATGCCTCTTAAGAACATCAGGTAGAATTAAGATATTGTTTTGAGTGCATTTTCTTTTAGAAGTAGTTAGTAAAGGGTTGCTCTTATATCATTATACGAGAAGTTGATTCTGCAGCACTTATGCAACTATTCATGAGTTCTTCTCATCTCTTTTTTTCCTTCCATTGGAAAATGGTGATAGATTATATAATATGCTTAGAACTTGTCATATGAAAGAATTTTTTGGACCACCATCTCGAGTGGCCAAGTGATACCCTGTGTAACTCATTTAATGGAAGAACCAAAGTACAAACCCCATTTCCCAAATTTGTCAGAGATGTTTTTTCCATTTTTACTAGTACCAGAGGAAGAAAGGCTGATGTGACTATAATCTTTTTTTTTTGTAGGGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAGGTACTGCATGTCCATCTTTTATGTAATAAATTCTAATATGGAAACCTCAAAGATTAAAAAAGTTGAAGTTTATGGTTTAACGCGCTCTCTCAATGCATTTGGTTTCCATGATATGCATTACAACAGGTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAGGTAACCTTTTCCTTTGGTTATTGCCAATGCCTGCTATATTGTTTTCTTGTACTTATACGATACCTCTGTTTTTTAACTATTTTTAAATTTATATATCTGCTTTTAAATTGGTGCCAAAAGAATTGTCTTCTTACCTGCACAACTTTTAGAAAGGCATTGAAATAAATTGAAATCATGATTAGCAATTGTTTGCTCAAATATCAAAGAAATTATTTATTGCCTCTCTGCTGTTTTTTTCCCAGTGTGGAATAGAAGTAGCATCAATTCATCACAACTCTCAAAAAGATGCAGGAAAGAAAGATTGCATTTGACTTCTAATGTATAAACCTGCTTTCTACTTATACAACATGAGTTCTCCAAAAGGATGACCTAGTGGTTGAGGCATGAGAGATCCCAGGTTCTCATTCTAGCTACCACATTTGTTTGACCCATGCTCTAGCCTTGAGAAGAGGATTACCTTGGGAACTTATACCTGTGGGCTGTCCACGCTGTGTGATGTATTAGTGGGGTGCACAAGCTAGCTTGAGACAAAATGCTTTGGGTTGTCATTTTACCATCTAACGACTCCTTTCCAAAACTGATGTCCGTTGGTTTTGCTAGAGCTTGCAAATTTGTAAAAGAAAATGAACAGGAGAAATACTAAGTATCTCTAAATACAACGTTTCTACTCTACTAGTCCAGACCACATCCAATATATATATATTGGAAAAACTATATATTTCTAGTCTACCAAACAAATTAAGAATTTTTTTTCTTGGACTATTTAATTATATAATTAGAAGTAGTAAAGGAAGATACCCCAAGGATTCTGGGGGTTTCAATGGTGATGTACATGCTTAGATTTTATATACTTGTAGTGGCACTTCGGGGCTTGTGGATTGTTTGGGTATGCCGCATGCTTAAACTTTGATGATACTTAGTGGATCTAGTTTGGACATGTAAGGTTTGCTATGAAATGTACATAATGTTTGGGAATACCTTTTTCTACTTGAGATTCATCTGGTAATTGGTATAGTAACATTTTTACTGTCATTGTAGACTCAGCAACATCCTTTGGTGCTATTCTAAATTAGAACAACAACATACTCAGTGTGATCCCACAAGTGGGAAGAGGGGGAGGGTACTCTGTTTTTATTCATTATTTATTTTGTTACTGCATTATTCTCTTCATTTGTATGTAATAAATATATGCTTTTGTGTTAGCAATTCTATTTAGAATTGGCAATTGGCATAGAGTTGACAATGAATCAGTGAAGTCTTCTTTTCATGTAGATGAGTATAAGTATATGTCTTAGTGGTTAGGAAGTGATCAAAGAAGTTGAGGGGGCTTGTTGTTCCTTTGAATGGTTGAAGCCCGCGGATTTAGAAATAAGGGGGAAATCTAAATCTTGTTTGAGAATTGTAACTTCTTTATTTGTATTTTTTGAAAGAAAAAATAAAATTTGAAGAGTATATGTGGAGCAGGCATTCAGTGTTTATTATTTTATAACTATACTGGGAATCCATAAGTTTTATTTATTTTATATCCCCCTCATTCTTCGTTCTCTAACATGTTGGAAGTTTTATCTCTGCTGGAGTTGTCATGTAGATGAACTCATGCCAGTTTCAATAAAATGCTTGTAAGTAAGTGGCAGAAGTTTCATGTTTCCTTGCCCTCATGTTGCAGAGAAATCCTTTCTTGTCGACCTGATGAAATTTTGTGGAAACTAGTGGTAGTTATGACTGATGTTGCTATTTCACCTATGTCGTCCCACTATGAACTAATAGTTACATCAAAGCTTGTTCCACTGTATGTAATACTTGGAAGACATTAGAGAGTTGATGAGAGAATGATGATAGGAAACTTTGGCTAGTTCAGTTAAAGCATTCATTTGTTGTTTCACTCAAAGACAACATAATGTCCATTAAATCCCAAAAGCTAGCTTAAGAGGTGAACGTTGCACAACATCATATAAGGAGACAATAATCACATTTGTTCAATAGACATAGGAGGATCTAACAGCCTCACCCCACACGCTCTAGCTTGTCTAACTGGAGCGTGAATAACGTAAAGCTGGGTTCTGATATCCATGAAGTAGACCTTGCCTGTAGCTTAACCTCAAAAGTTAGGTCATGCAATGAGGATAAAGACCATACGAGGAGACAACCTATTTCTACCTGCCAATATGGGGCAATTTGAAAGTTATCCTTCCCAAAATTTGACTGCTATGCTCTGTCTGTTCCCTTCAGGCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACTGTGAGTTTCTTGACTAACCTAATCCAACTATTCAGTTTTGTGAACTCCATTTCCTTCCTAATATCGTATTTATCTCTCTGCAGCCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTG-----AAATAGTTTCAATTTACTTGACTCAACATAACTTGGAACTACTAGAGTTCTCATTTTCCACACATATGTTATGTTAGAATCGATGTATATCGATTATAAGATGTGAAATAAGAATATGAGAATTTAGCTTTCTTGATTACTCTCCATAGTAAAATAAAAACATTGGCAAGACAAGTACATCACATCCATTTTCTCTAATGAGACTTCATTATCCACGGCTATACACTGAATTTAGTTAGAACTAATTTACGACATTCATAGACATTATCTGCTTCATATTTAAACAGAAGAAGTCATAGAAAAAAAAAA</genome_strand>
        <mrna_strand>CTCTCCTTGTACCGGCGAGCAAAATGACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAG..............................................................................................................................GTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACT...................................................................................CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAAAAAAAAAGTTTCAATTTACTAGACGCAACATAACTTGGTACT.......................................................................................................................................................................................................................................................AACAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336019" ref_strand="+" ref_description="SGN-U336019        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | biotin carboxyl carrier protein 1 (BCCP1), identical to biotin carboxyl carrier protein of acetyl-CoA carboxylase precursor (Arabidopsis thaliana) gi:9759121:dbj:BAB09606 | chr5:5360812-5363129 REVERSE | Aliases: MQK4.12, MQK4_12(evalue: 1e-16, score=83.6) genbank/nr: gi|29169309|gb|AAO66472.1| biotin carboxylase carrier protein [Lycopersicon esculentum](evalue: 8e-41, score=169)">
      <seq>tcctgtaagggtctacaatctaattggaatcattcaggcgtatctagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggaatccaaggaagcaatatctaactttattatccaagtttcaagccttgtcaagctagttgattctagggatgtagtggagctgcagttaccacaactggattgtgaaattctgatccgaaagaccgaggcactaccacaagcacctgctcctgttcctgcacaagctccatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="31947" stop="33043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="63" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="209" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32621" g_stop="32743" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="332" r_length="123" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-U336019" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTAT</genome_strand>
        <mrna_strand>GGTCTACAATCTAATTGGAATCATTCAGGCGTATCTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGAATCCAAGGAAGCAATATCTAACTTTATTATCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTAGTGGAGCTGCAGTTACCACAACTGGATTGTGAAATTCTGATCCGAAAGACCGAGGCACTACCACAAGCACCTGCTCCTGTTCCTGCACAAGCTCCATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320316" ref_strand="+" ref_description="SGN-U320316        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | thioredoxin, putative, similar to SP:P29450 Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum sativum}; contains Pfam profile: PF00085 Thioredoxin | chr3:588415-589692 REVERSE | Aliases: F13E7.33, F13E7_33(evalue: 1e-47, score=186) genbank/nr: gi|15232959|ref|NP_186922.1| thioredoxin, putative [Arabidopsis thaliana] gi|27735269|sp|Q9XFH8|THF1_ARATH Thioredoxin F-type 1, chloroplast precursor (TRX-F1) gi|6728989|gb|AAF26987.1| thioredoxin f1 [Arabidopsis thaliana] gi|17529210|gb|AAL38832.1| putative thioredoxin f1 protein [Arabidopsis thaliana] gi|20466041|gb|AAM20355.1| putative thioredoxin f1 protein [Arabidopsis thaliana] gi|21537004|gb|AAM61345.1| thioredoxin f1 [Arabidopsis thaliana](evalue: 8e-46, score=186)">
      <seq>ctctctctacctatacatacagagctatacgtatagattgataatagcaaaaatggcgttacaagttcaagtaaatcaggtaccattgaagtcatcaatggcgccggtgccggcgcagtcagcatcttcttcgtggaggttcaacaaacagtcagtggtatgcgttgcaggagattatggcttctcgtctagggttttgaggaacagaggattgagcttgagggtgaagtgtagtagctcagatgctactgttactactacgactgtgacggtgggacaggtgacggaagtttgtaaggataccttttggccgattgttgaagccgccggtgaaaaaaccgttgtagttgacatgtatacacagtggtgtggtccttgtaaagtgattgctccaaagtttcaagagctatcaaagaaatataacgatgtggtctttctgaagctggactgtaaccaggacaacaggccactagcaaaggaactaggcataaaggtggttccaacattcaagattctgaagaacaataagatcgttaaagaagtcaccggagcaaaacttgatgatttagtagcagcaattgagggtgtgcgatcaagttaaatatttcttcttttttttttctatgacttcttctgtttaaatatgaagcagataatgtctatgaatgtcgtaaattagttctaactaaattcagtgtatagccgtggataatgaagtctcattagagaaaatggatgtgatgtacttgtcttgccaatgtttttattttactatggagagtaatcaagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="38865" stop="35740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38565" g_stop="38200" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38199" i_stop="36544" i_length="1656">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36543" g_stop="36444" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="466" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36365" g_stop="36040" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="792" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="793" polyA_stop="803"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-U320316" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38565" e_stop="38200"/>
          <exon e_start="36543" e_stop="36444"/>
          <exon e_start="36365" e_stop="36040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTACCTATACATACAGAGCTATACGTATAGATTGATAATAGCAAAAATGGCGTTACAAGTTCAAGTAAATCAGGTACCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAGTCAGCATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTGGTAAAATTACATATACTTTCTATTTCCTTTTAGATTTGATGAATTTAGTGCTTAATTATGACTATTACTAGTATAAATCACTGCTAATTTTGTTTTATCCTTTCTCTCAAGTCCTTTTTAGCGTAATCCTGATAAAAGATGAGGAGGATTGGCGTAATTTGATAGTTAAGGTAATTATAATCATGATTATGACAATTAACATATAAAGGTGAGTCTTACTGGTCAATGAAGCTCGAAATGAACTATCTTGGTTGAACAAGGTTCGAAGTATAAGATATTTGAGGTCCGAGTAAACTGAGCTGCACACTACTTCTGTATAATAAAGAGGAAAAGAAACTAAGATGAATTCTGTGAATACTGCAACAGAGTTCTATTCGTTTTCCTGAACAGAATATAATAGATGATGAGTCCATAGACTGGAACAGAATGGATTAAGAGGATTCATATAGCTGACTCTAATTCATTTGTGATTGATGTGTGCTAGATGATTGGCAGAATCCTTATCTTATTAGGAGGAAGGAGGTTTCCGAGTGAACAACCAGATACTTACGAGAGATCATTTGAACTAAAAAGATCTGGTTTTCATGTCATTCCATAATGGAAAACTAATTGGATGTGTAAGAGGAAATTATTTGAACTTAAATGGTGTGGTTCTCATGTCATTCCACGATTGGCGAGAAGTTTGCTTTACTAACATAATTAGGGAGGTTGTAGAGTAGGAGAATGAAGTTTAAACTTTAAATATGTTTGATGAAAATGAATTTTTGTTTTTATAAGGAAATCCCACTAAACTAGACTTGTACGCATTGATATGAAAAGTAGAGGCAAATGGAGTCAAAGGTGAATCCCCAATCAGCAAAGGGAGATGAACTCTTATTTGGAGAACTTGGAGCAGAAAGTTATCTTCAACATTTAATGCTTAGCTTTGATTAGCCTCTCATCGTTTGCGTTCTCTTAAATTGAAGTGATTATTGAGATCAATCATTGATAGATAGTTGAGACCATTTATCATTGCGGGTTACTTGGCTTAAGCTATTTTAAATTGACTCTGCTTTGTCTTGACCTTACAGGGTGGGGTTTATGTAGTAAAATCTTATTTAGATGTTGCAGAAAGAATGTTAACTGGTAGTTGATAGTTCTATAAGTTTCTGTTGTCGCCAAACTGTTTTGAAGATGGGGTAGATTCTACCTAGGTGGGTAGTGGGTATATGATTGAGAAGCAAAATTGCTCTCGTCCATAGGCTCTACAGCTTGCAAATGAAAGCCTCACATGTGCCAAGATATTACAGAGTGAAAAAGTAAGTACAAGAGAGAGGAACACCAACGAATTTCACTATTGATCTTCATGTATTCATCTTAAAGAAAACGGATAATAAAATGGACTGGGCAACTATTGGAGACTAATGAATTGTCAATTGTTTTGGAAGACATGTTTTTTCTGCTTTTGAAAGTGTAGGATTTTGAAGAGTGTCTGATATATCGTTACTTGATTGAATGCTTCTTTGAATTTTGAGCTAGATGTTTTCTGGACCTTACTTTTATCTATCATCAGTAATAATTGGTTAGTTGTGCCTCTGGGAAACAGTTTTTCGACAGTGTCTTCTCCCACTGTCTTGGTTTTCCGTATTGTGATTTCTGATTTCAATCCACCTGCAGGTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAATCAAGAAA</genome_strand>
        <mrna_strand>CTCTCTCTACCTATACATACAGAGCTATACGTATAGATTGATAATAGCAAAAATGGCGTTACAAGTTCAAGTAAATCAGGTACCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAGTCAGCATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG..............................................................................CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAATCAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318570" ref_strand="+" ref_description="SGN-U318570        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | chaperonin, putative, similar to SWISS-PROT:P50143- T-complex protein 1, gamma subunit (TCP-1-gamma) (Xenopus laevis); contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family | chr5:9255056-9258979 REVERSE | Aliases: F9D12.18, F9D12_18(evalue: 0, score=782) genbank/nr: gi|15240317|ref|NP_198008.1| chaperonin, putative [Arabidopsis thaliana] gi|27754225|gb|AAO22566.1| putative chaperonin gamma chain [Arabidopsis thaliana](evalue: 0, score=782)">
      <seq>catcctacagtaatatgtagagcttatgccaaagctcttgaagatgctgttgccgtgcttgacaaaattgcaatgacagttgatgttgaagatcgtgaaacaatgttgggtttggttaagagttgcatcggcacaaaatttactagtcaatttggggatttaatttcagatttagcaattgatgccacaagaatggttggtgtggaacttggccaagggttacgcgaggtggacatcaagaagtacatcaagattgagaaggtgcctggtgggcagttggaagactctgtggtgcttaaaggagtaatgatgaacaaagatgtagttgcccctggcaaaatgaagagaaagattgtaaaccctcgcatcattctacttgattgtcccctagagtacaagaaaggtgagaaccaaacaaatgcagagctccttagagaggaggattggactgtcctcttgaaaatggaagaagagtacattgagaacatgtgcgcacagatacttaaattcaagccggatgtggttattactgaaaagggactcagtgatctggcatgccattatctgtgcaaggctggtgtcagtgcaatcagaaggctaaggaagacagacaataacagaattgctaaggcatgtggggcagttattgttaatagacctgatgagttgcaagaatctgatgttggtactggtgccggtctgtttgaagtgaaaaaaattggggatgagttctttacttttattgttgattgcaaggatccgaaagcatgtactatacttttaaggggtgcgagcaaagatctactgaatgaagtagaaagaaatctacaggatgccatgtctgtcgctagaaacatcatcaagtgtcctaagctagttcccggtggtggtgcaacagagttaactgtatctgccatgttaaagcagaaaagttcatccgttgaaggcatagaaaagtggccgtatgaagctgctgcaattgcttttgaagctataccacgaactttggctcagaactgtggtgtaaatgtgattcgtactatgaccgctcttcaaggaaagcatgcaaatggcgagaatgcatggataggcattgatggaaacactggtgagattaccgacatgaaagagcggaagatatgggattcctatgctgtaaaagcacaggcttttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaagaagcaagcccctggagcaggacaaggtccatcaaaaccaaaaatagacgaagaaggtgatgcagacaatgaccagctaattccggaatgaacatgatatactatgctgcaatggaaatgcttatgcatttgataaccacttggaagttttcatctacttcagtatagtctgcccttgactgattgcttgaactttttgtgcttgacatgtaacttctgctgtttttgactgctggcagttgttggttgtatttgaaatagattttgtttcagtttttggttttaaattaaatttgatgttgcaagtacaatgactaatcaatgtaggggtatcatgtttttcaaggatccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="43901" stop="85316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44201" g_stop="44222" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44223" i_stop="44298" i_length="76">
            <donor d_prob="0.281" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44299" g_stop="44370" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="94" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44371" i_stop="44915" i_length="545">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44916" g_stop="44989" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="168" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44990" i_stop="45729" i_length="740">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45730" g_stop="46392" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="831" r_length="663" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46393" i_stop="46471" i_length="79">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46472" g_stop="46597" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="957" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46738" g_stop="46842" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="958" r_stop="1062" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46926" g_stop="47000" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1063" r_stop="1137" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47155" g_stop="47618" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1138" r_stop="1601" r_length="464" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="47619" i_stop="47742" i_length="124">
            <donor d_prob="0.961" d_score="0.90"/>
            <acceptor a_prob="0.720" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="47743" g_stop="47751" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1602" r_stop="1610" r_length="9" r_score="0.444"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-U318570" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44201" e_stop="44222"/>
          <exon e_start="44299" e_stop="44370"/>
          <exon e_start="44916" e_stop="44989"/>
          <exon e_start="45730" e_stop="46392"/>
          <exon e_start="46472" e_stop="46597"/>
          <exon e_start="46738" e_stop="46842"/>
          <exon e_start="46926" e_stop="47000"/>
          <exon e_start="47155" e_stop="47618"/>
          <exon e_start="47743" e_stop="47751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTACAGTAATATGTAGAGGTAACAGACGAGCCTTAGAATTTTATATCCTTCCGCCGAAGTTCTCTGAATTTAATATATGTACTTCTGTGACCAGCTTATGCCAAAGCTCTTGAAGATGCTGTTGCCGTGCTTGACAAAATTGCAATGACAGTTGATGTTGAAGATCGTAAGTTCCCTCTGCTTCTTACATTTCTGTCTTCTCATAACTCCACTATGAGTACTTCTATATTTTAGTAGTTCCATGCCTGGAGGTATTAGATAAATATAAAACACCTAGAGTTTTGGATGTCTTCTGTAGAACTTTTGGAGGTGCTTTTGGATAACTAGTTGAGTTTGCTATATGTTTTTAGTGTGGAAGAGAACATAATTTTGTGTGGTTGCTGGAATTGCAATTGCTAGGTCTTGATATGGGGTTGTAAGCAGAGAAACAGCATCATTATTTAAATAAATTCTTGAAATAACTTTTTGTTATGAACATCGAATTGAGTATATGGGAGTTACACATTTAACTAATTTTTGTGCTTTTCGTTTAACTTGATCCTTCTATCTTGGGTTTTGATTTTCTCATCGCTCCTTGCTCTTTTTCAAGTTTTAATTTTTTCGTGCTTATTTTTTACAGGAATAGATTTTATGCTATTATTGTAGCGTATATACGTTTTCTGAATGATTTTAACATGCATTATTACTCAAAATAATTGCTAACTGTGGCAGGTGAAACAATGTTGGGTTTGGTTAAGAGTTGCATCGGCACAAAATTTACTAGTCAATTTGGGGATTTAATTTCAGTAAGTACAATTTATTTCTATTACGCCCCACCCCCACCCCTACCCTCAAAGTGACATGAAATAAATTAAGAAACTTACATCTGGAGGTATTTGGAGCGAAAAAATAAATTGTTTCTTAATTTCGGATAGATGGCCTCTTCTTGAAGGTATGTACTATGTCTAACCTACAAGTGGGAATAACAGAAAGCAATCAAAGCATAATCTATATTTGTGCCTTGATATCTCATGAGTTCTATTACCTCACATCAAATGTTTTGAACATCAAGAAAGAAGACATGGATACATGACTCTTTTTTCCTCGAAAAGGGTAAATAATTAATTGTAAAGAAGCACATGCATACAGACTAGTTAACTACTAATGTTTCTTATGATTTTCTTCTAGTCATATAGATACTTGGTTCTTGTATTTCTTTCCATAGTGTGTTATTTATAATGACTTAAGAAGTTACTTCCCACAACTTGATTGATACTTTTGGGATTGAGATATAGTTCTCGGGATTTGTGTGTGTGTGTGTGTGTATTTTATGGAGCAACGTAAGGTGATGGAAATTCCATCTCTGATCTCTTGGTTCCAGCACCTCGACTTTGGTTTGGTAACCATGAGATCAGGTCTATACCAGGCAACTGGTTGATTGATATATGGATTTCAAATTAAAGAAGTCTTCCTTCAAGAAGTCCTTTACTGCAATAGGATTGAATAGTTCATGTTTTCAGTGTTCATTGTCTGACTTTATCATCAGGATTTAGCAATTGATGCCACAAGAATGGTTGGTGTGGAACTTGGCCAAGGGTTACGCGAGGTGGACATCAAGAAGTACATCAAGATTGAGAAGGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAGGTATCTCCTCAATTCCATAGGTTTAGCAGATGATAGCTATAAATCACACTATTTTGAGCTGCTCCTTGTGCTTTTTCAGGATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAGGTAAGTAAAGTTCGTCAAGTTATTACTCTTTATTTGCAGATTGAAACAAGTCACGAATATATGATCTTCTGAGACTCTTTGTGGAAATTGAAAAAAAGCCAACGGATGCTAATACTTTCATCCTTCTATCATATATGCAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAGGTATGATATTATATTCTTCCTTCCTACACTCCATGACCCCATCAGAACTAGGATAGGGGATGATTCATGACACACGTGTATGTGTAAGAGTCTGTAAAATGAAGAATGAAAATAGATATTTTTATTTGATTAAACAATCTTTATATATGTGCAGATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGATCCAACAAATTGAAGGCCATACAAATCAAATTCAGGAAACTTATGTTGAGTCATGAACTCAATTCTAGCAAACAATAATGCATTATTAAGTGCAGAATGTCAAAATAAACCTTAATATTCACTAAGGGTTTATTTGTAGGAGGCACAA</genome_strand>
        <mrna_strand>CATCCTACAGTAATATGTAGAG............................................................................CTTATGCCAAAGCTCTTGAAGATGCTGTTGCCGTGCTTGACAAAATTGCAATGACAGTTGATGTTGAAGATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACAATGTTGGGTTTGGTTAAGAGTTGCATCGGCACAAAATTTACTAGTCAATTTGGGGATTTAATTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGCAATTGATGCCACAAGAATGGTTGGTGTGGAACTTGGCCAAGGGTTACGCGAGGTGGACATCAAGAAGTACATCAAGATTGAGAAGGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAG...............................................................................GATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAG............................................................................................................................................TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG...................................................................................CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG..........................................................................................................................................................ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGATCCAAAAAAAAAAAA............................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317598" ref_strand="+" ref_description="SGN-U317598        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:7929594-7931299 REVERSE | Aliases: MQM1.22, MQM1_22(evalue: 2e-65, score=247) genbank/nr: gi|15237781|ref|NP_197743.1| hypothetical protein [Arabidopsis thaliana] gi|8809708|dbj|BAA97249.1| gene_id:MQM1.22~unknown protein [Arabidopsis thaliana] gi|22531192|gb|AAM97100.1| unknown protein [Arabidopsis thaliana] gi|23198016|gb|AAN15535.1| unknown protein [Arabidopsis thaliana](evalue: 2e-63, score=247)">
      <seq>tgaattcttcttcttctttatcctctccattttcttcctttttttcaatttctcatttcttctggacgatcgccggagactcaatcggaaaattcaccaactgtttatggattgcagaagcagatccctatcagcatcgccgtccgccgtctccgccgccgtcaacaacaaatatccgattcttcagttttcatctcagctctctaatccttcatatactcctttcaccccgtggatacgatacctccggttcagtttttcctgatttatcttacaatttttttatatgcgaagagaactcccaaagtttactctttcagtaaagctgtcattgttttaataatccggagccaaaacttaaacttgaattaaggagacactaattaaattatagccaagaagaggtggtggtgtggcttgaaatgatttaagtgctttcaatgtcaacttaagatggctgcttctacgagtgtgacaagtcctctacataagaagatgtctgggaggagggctaagacttctggttgggctgcatttgacctcaatgagagactgaagcaacaaaatcttgagccagagcctgagagagaaaccttccccaacttatccgttccgcccacttccttaaggggtccatctcaaagcatcgcaaagaacagtggagcaactctagagaagcctttttcatccttgctgctaccgtctgtaagttttccatcgttaatggctactaaagagtctgatgcaaatcatagtcaagttggcgattcttgtttcaaccagactgatggttttatccgagaaagaggttttctagaggtgtgtcgaaagctgaaagagctccagccatgggctgatgacaccttgatcgcagatgtcttggctggtgtaaatgatttcaataaggccttgacattgttggatgcaatggtatctcctgatcatacatatgttgcacatgacaacagaacaactccagaagaagcagatactccctacatacaaaaccttaaagacgtagacacagatactaaaggggtcaagtctagtagtaagaattctctcatgaatattaacaagtttgctgctaataaaggtgtgtcattgacagacaatgtggatatggatgaattgagccatgcacttgccaagtgtcttcagagcaacagtcaggaactaataaataactgtgtttctcacgagaacaaacttcattttgatggagcagtggggagtatgagctttgtaccggttgagcctgagtgggaagaggatgatatttactcgatccatcggaaggatgcagtgaagatgacgaggtcggcagcccgacattctaaggctgccagtgaggcctatctcagaggagaccacttatctgcccaacatttttctctaaaagcccaagaagagtgggatgctgctaataggctaaatgcccaggctgcaaaagaaattttgactgcctgcaacggtaagaatgatcaatggacactggacttgcatggtcttcatgcaaaagaggcagttcaagccttacaagaacatttgcaaaagattgaatctcaggtggcacagaataagcgcagctttggagctgctgtctcttttgatgtggagaatgagagcaaagggtcccacctattgaataagcagcggccagctttcttagaggtcataacaggtaaaggtattcatagccggggacaagctgcacttccaatggctataagaagctttctcgtggagaagggatatcgttatgaggagacaaggcccggggtgatcacagttagacccaagttccgaccacgataaatacgttcatatgtatattttgggtcccaatttagtgcatttgtttctgttgctatcaactttgacctagagattttgagtcttgaactggtcttataaaaacgaccagaaacctgttgtggttatatactgttgaatatttctgtaattgcataccatcaaacattgtatgtactttgctgatttctccacaggtccaaactaacacttgaaagtatattggaggtagcttggtcaagtgtctcaaattactattcacggtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccgggggggggggccgggccccctttcccccctagggggggctttataaaatttcgggggccgttttttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="54784" stop="48598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54484" g_stop="54178" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54177" i_stop="52309" i_length="1869">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52308" g_stop="51297" g_length="1012"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="1319" r_length="1012" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51296" i_stop="50313" i_length="984">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50312" g_stop="49948" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1320" r_stop="1684" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49947" i_stop="49398" i_length="550">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49397" g_stop="49328" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1685" r_stop="1754" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49327" i_stop="49227" i_length="101">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49226" g_stop="48899" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1755" r_stop="2082" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-U317598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2082</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54484" e_stop="54178"/>
          <exon e_start="52308" e_stop="51297"/>
          <exon e_start="50312" e_stop="49948"/>
          <exon e_start="49397" e_stop="49328"/>
          <exon e_start="49226" e_stop="48899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCTTCTTCTTCTTTATCCTCTCCATTTTCTTCCTTTTTTTCAATTTCTCATTTCTTCTGGACGATCGCCGGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAGGTATATTGACGATTTTGCCCTTGATTCCTGCTAACATGTGTTTACGAAGAATTGTTTTTCTTAAACTGAAGGTTGGATTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATCAATTAAGATGGGCATTATGGTAAAGTATTCATATTAATCATTGTTTCTTAAGAGACGTGTAAAGTCTTAAAAGTGGATAACTAAAAGTGAATGAAGGGAATACTTGATATTTTCCTAAAGTTAAGCTAAAGTTTGGATTCTTACTGCTAAAAAAAAGGTTGGATGTTTACTGTTTCTGAATGATTGCTAAGGAACTGAAGTCCTTAGAGATTTGAAATCTTACTGTAGGTGGTTATTGAAGGACATGAAAGTTTTGAACAGGAATACAAAATTGATTGTAGTTCTCCTAAAAGTGAGCTAAAGGTTGGATTTTTACTACTTTCAAAAAAAAAAAGTAGAAAGGTAGAGATGGTTGGATTTTCAGCTTCTAAGTGATGCAAACATTTTGTGTCGTTAAAAATTTTAATTTTACTGAAGGTGATTGTAGGAGGACATGAAGATTTCGAACAGGAATATTGTTAATGTAGTTTTCGTAAATTTGTAGCTAAAGGTTGGATTTTACAGCTTCTTAGTGATACAAAGGTTTTGAGATGGTTAGAAAATTAAACTTTACTGAAGGTGATTATTGTACGGCATCAAGATTTTGAACAGAAATACATGTTAATTATGGTTTTCCTAAATTTTTAGCTTAACGTTGGATTTTCTGCTTCTGAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGATATTAAAAAGGAAAAAAAAAAGTAGACTGATCTAAAGTGGAGAGCTTATGATAGTTGGTGGTTTGGAATGAACCTTCATAGTTAAACATCATTTTTCAACCAGCCTTATTGCTTGTATTATCTTTCATTTGAAATTTGATGGTGGGATTTTTGTGCAGTTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCTTGAGCCAGAGCCTGAGAGAGAAACCTTCCCCAACTTATCCGTTCCGCCCACTTCCTTAAGGGGTCCATCTCAAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTGCTGCTACCGTCTGTAAGTTTTCCATCGTTAATGGCTACTAAAGAGTCTGATGCAAATCATAGTCAAGTTGGCGATTCTTGTTTCAACCAGACTGATGGTTTTATCCGAGAAAGAGGTTTTCTAGAGGTGTGTCGAAAGCTGAAAGAGCTCCAGCCATGGGCTGATGACACCTTGATCGCAGATGTCTTGGCTGGTGTAAATGATTTCAATAAGGCCTTGACATTGTTGGATGCAATGGTATCTCCTGATCATACATATGTTGCACATGACAACAGAACAACTCCAGAAGAAGCAGATACTCCCTACATACAAAACCTTAAAGACGTAGACACAGATACTAAAGGGGTCAAGTCTAGTAGTAAGAATTCTCTCATGAATATTAACAAGTTTGCTGCTAATAAAGGTGTGTCATTGACAGACAATGTGGATATGGATGAATTGAGCCATGCACTTGCCAAGTGTCTTCAGAGCAACAGTCAGGAACTAATAAATAACTGTGTTTCTCACGAGAACAAACTTCATTTTGATGGAGCAGTGGGGAGTATGAGCTTTGTACCGGTTGAGCCTGAGTGGGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAGGTAGATTTACTTGCACTTGTCTATACGCGTTTACCTTTTCAGTGAAAACATGATTGATTTACATTTTCCCTGCTTCCCTGTCTTCTTTTAATTTCATTTAAGATTGCAAGGATAGTTTATACTGACGATAAGGACAACTTTATCAGTGAGGGTCAAGCATTGGCTGGGTTTCATTCAGGCCAGTAATTTCACCAAATTATTAAAACTCTGATTCTTTTATTGAAAATTTGAGCCATTTACCAATTTGAGGGAATCGAAAAGAAATATGATTACATTCATGAGAGGAAAAGGAACTCCAACAACTTTCCCATCTTCCCTCCTTTCATTTACCATGGTCAGTAGTAACACCTTTTTAAGTAAATAGAGAATAATGTGGAAAGTTGGGATGCAGACAGTTTGCAGCTAAAGTTCAATGACAACCCACAGTTTACATAGCCCACTATTTGAATATCTAAAGTTTCCTTAATCTAATTGCTGCAGGTACCTAGTGGGTAATATATTTAAAATTCTGCCAGGGTAAATCAGGACAGTAAAGACTGGTAGACTGAGTCTGTTTTCCATGAAAGGGTATTTTAGTATCTTTTATATTATGCATAAATGGAAGACAGTGGTAGTTGGTGAACGTTTCTTTTGTTATTGATTTTTCTATATTTGAAGTGATACTCTCTAAGATCCCATGAACAGAAGATGTCTCTCAAAGCTCTGCCAGGTTTGGTTATCAAATAAAGATAATTAATTATCTTTGGCATATTTTAGTATGAAACATTGGGAGAAAATTATAGGGGCCAAACAACTTCAATAGCAGATATCGCTTTTTCAACAAACTAAGTTAGGCAACATATTATGATGAAACAAACCATCTTCATTCTTTGTTGTTAACATTACAACCGTAATTGTTATAAGTTTCATGGTTTTGAACGTGTTGATATCTTATCCAAGTTATAATTAAATCAATTCTGAAATCCTCTCTCATTCTATGAACAGGTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAGGTATTTTTCTCTTGAAAAGTGTTGCTCAAGGATATGATACATCTTACAAGTCTAGATGTATTCACCAGCAACATGTTCTTCATTATGGTTGTAGTAATAAGTTGGAGTGTGTTTGGACCTGTTATTACTTTATGAATCTTCATCATTCACTCTATTTCCTTAGCTCTAGGCATTCTGTTACTATCTTCTGGAAGTGTCGAAGTGTTGTGAGAATTATGTGTTTTTCTAAAATATTTTGTTTTTAGTTGCTTTACTAGGAAGATTGAGTATCCTGGTTGAATTGTTATGCTTGATATTTGGTCAATCACAATCATGGAGCTCAATCTCATACATGTTACCGAATCATAACATCATGTATCTAAATGAGTTATTAGCCCTTCCCTTTAATAGAACATGTAATGGTGGTCATACTTCCCGGTGTCAAAACTTATCATGGATTGTCGCTTATTTTTTAATTTATTCAGTTGGAGCCTCTTTTGTTACTAGTACCTTAACTTACTTACAAGATAAAGTTGTCTGACTAGTGTCAAGTGTTGTTGCGTTTTCACAGGTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGGGTATATTTCTTTTCCAGGAACTTTTGTATGCTTTTGGCAAATGTTTTTTTTTATTTCCCCGATCAATAAACTAAGTGGAATGTGAATCTCATGTTCTGTAGATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTAGACCCAAGTTCCGACCACGATAAATACGTTCATATGTATATTTTGGGTCCCAATTTAGTGCATTTGTTTCTGTTGCTATCAACTTTGACCTAGAGATTTTGAGTCTTGAACTGGTCTTATAAAAACGACCAGAAACCTGTTGTGGTTATATACTGTTGAATATTTCTGTAATTGCATACCATCAAACATTGTATGTACTTTGCTGATTTCTCCACAGGTCCAAACTAACACTTGAAAGTATATTGGAGGTAGCTTGGTCAAGTGTCTCAAATTACTATTCACGGTGA</genome_strand>
        <mrna_strand>TGAATTCTTCTTCTTCTTTATCCTCTCCATTTTCTTCCTTTTTTTCAATTTCTCATTTCTTCTGGACGATCGCCGGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCTTGAGCCAGAGCCTGAGAGAGAAACCTTCCCCAACTTATCCGTTCCGCCCACTTCCTTAAGGGGTCCATCTCAAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTGCTGCTACCGTCTGTAAGTTTTCCATCGTTAATGGCTACTAAAGAGTCTGATGCAAATCATAGTCAAGTTGGCGATTCTTGTTTCAACCAGACTGATGGTTTTATCCGAGAAAGAGGTTTTCTAGAGGTGTGTCGAAAGCTGAAAGAGCTCCAGCCATGGGCTGATGACACCTTGATCGCAGATGTCTTGGCTGGTGTAAATGATTTCAATAAGGCCTTGACATTGTTGGATGCAATGGTATCTCCTGATCATACATATGTTGCACATGACAACAGAACAACTCCAGAAGAAGCAGATACTCCCTACATACAAAACCTTAAAGACGTAGACACAGATACTAAAGGGGTCAAGTCTAGTAGTAAGAATTCTCTCATGAATATTAACAAGTTTGCTGCTAATAAAGGTGTGTCATTGACAGACAATGTGGATATGGATGAATTGAGCCATGCACTTGCCAAGTGTCTTCAGAGCAACAGTCAGGAACTAATAAATAACTGTGTTTCTCACGAGAACAAACTTCATTTTGATGGAGCAGTGGGGAGTATGAGCTTTGTACCGGTTGAGCCTGAGTGGGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGG.....................................................................................................ATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTAGACCCAAGTTCCGACCACGATAAATACGTTCATATGTATATTTTGGGTCCCAATTTAGTGCATTTGTTTCTGTTGCTATCAACTTTGACCTAGAGATTTTGAGTCTTGAACTGGTCTTATAAAAACGACCAGAAACCTGTTGTGGTTATATACTGTTGAATATTTCTGTAATTGCATACCATCAAACATTGTATGTACTTTGCTGATTTCTCCACAGGTCCAAACTAACACTTGAAAGTATATTGGAGGTAGCTTGGTCAAGTGTCTCAAATTACTATTCACGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336202" ref_strand="-" ref_description="SGN-U336202        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:7929594-7931299 REVERSE | Aliases: MQM1.22, MQM1_22(evalue: 1e-23, score=106) genbank/nr: gi|38346581|emb|CAE54571.1| OSJNBa0064D20.12 [Oryza sativa (japonica cultivar-group)](evalue: 7e-24, score=114)">
      <seq>tgcatggttttcatgcaaaagaggcagttcaagccttacaagaacatttgcaaaagattgaatttcagggggcacagaataagggcagctttggaggtgctgttttttttgatgtggggaatgagagcaaagggtcccacctattgaataagcaggggccagcttttttaggggtcataacaggtaaaggtatttatagccggggacaaggtgcacttccaaagggtttaagaaggttttttggggggaagggatattgttttggggggacaaggcccggggggatcacagttagacccaagttccgaccccgataaatacgtttatatgtatattttgggtcccaatttagggcatttgtttttgttggtttcaactttgacctagggattttgggttttgaaatggttttataaaaaagaccagaaacctgttggggttatatactgttgaatatttttgtaattgcataccatcaaacattgtatgtattttggtgatttttccccaggtccaaaataacacttgaaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="50430" stop="48644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50130" g_stop="49948" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49947" i_stop="49398" i_length="550">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49397" g_stop="49328" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="253" r_length="70" r_score="0.857"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49327" i_stop="49227" i_length="101">
            <donor d_prob="0.993" d_score="0.82"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49226" g_stop="48938" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="542" r_length="289" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="582"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-U336202" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336202" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50130" e_stop="49948"/>
          <exon e_start="49397" e_stop="49328"/>
          <exon e_start="49226" e_stop="48938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAGGTATTTTTCTCTTGAAAAGTGTTGCTCAAGGATATGATACATCTTACAAGTCTAGATGTATTCACCAGCAACATGTTCTTCATTATGGTTGTAGTAATAAGTTGGAGTGTGTTTGGACCTGTTATTACTTTATGAATCTTCATCATTCACTCTATTTCCTTAGCTCTAGGCATTCTGTTACTATCTTCTGGAAGTGTCGAAGTGTTGTGAGAATTATGTGTTTTTCTAAAATATTTTGTTTTTAGTTGCTTTACTAGGAAGATTGAGTATCCTGGTTGAATTGTTATGCTTGATATTTGGTCAATCACAATCATGGAGCTCAATCTCATACATGTTACCGAATCATAACATCATGTATCTAAATGAGTTATTAGCCCTTCCCTTTAATAGAACATGTAATGGTGGTCATACTTCCCGGTGTCAAAACTTATCATGGATTGTCGCTTATTTTTTAATTTATTCAGTTGGAGCCTCTTTTGTTACTAGTACCTTAACTTACTTACAAGATAAAGTTGTCTGACTAGTGTCAAGTGTTGTTGCGTTTTCACAGGTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGGGTATATTTCTTTTCCAGGAACTTTTGTATGCTTTTGGCAAATGTTTTTTTTTATTTCCCCGATCAATAAACTAAGTGGAATGTGAATCTCATGTTCTGTAGATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTAGACCCAAGTTCCGACCACGATAAATACGTTCATATGTATATTTTGGGTCCCAATTTAGTGCATTTGTTTCTGTTGCTATCAACTTTGACCTAGAGATTTTGAGTCTTGAACTGGTCTTATAAAAACGACCAGAAACCTGTTGTGGTTATATACTGTTGAATATTTCTGTAATTGCATACCATCAAACATTGTATGTACTTTGCTGATTTCTCCACAGGTCCAAACTAACACTTGAAAGTATATTGGAG</genome_strand>
        <mrna_strand>TGCATGGTTTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATTTCAGGGGGCACAGAATAAGGGCAGCTTTGGAGGTGCTGTTTTTTTTGATGTGGGGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGGGGCCAGCTTTTTTAGGGGTCATAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGTATTTATAGCCGGGGACAAGGTGCACTTCCAAAGGGTTTAAGAAGGTTTTTTGGGGGGAAGGG.....................................................................................................ATATTGTTTTGGGGGGACAAGGCCCGGGGGGATCACAGTTAGACCCAAGTTCCGACCCCGATAAATACGTTTATATGTATATTTTGGGTCCCAATTTAGGGCATTTGTTTTTGTTGGTTTCAACTTTGACCTAGGGATTTTGGGTTTTGAAATGGTTTTATAAAAAAGACCAGAAACCTGTTGGGGTTATATACTGTTGAATATTTTTGTAATTGCATACCATCAAACATTGTATGTATTTTGGTGATTTTTCCCCAGGTCCAAAATAACACTTGAAAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331379" ref_strand="+" ref_description="SGN-U331379        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>aaaattaaactttactgaaggtgattattgtacggcatcaagattttgaacagaaatacatgttaattatggttttcctaaatttttagcttaacgttggattttctgcttctgaatgctgcaataagtttgaaaatgtagaaagttcatgtttttactaaaattattgtaggagataagctttgtaaaaattgttttttacttttatgtacaagtggagaggtagataccatacaatgttttaattggatcggattactcaaattaatttgcatcgtggtaactgatcaaaaggtcacaagtggaagtcctagtggttgaggtggggactaactacctagagatttcaagttttaatcctagcttgaacacttgatgagttcacctgatctaaccttggtgagcatgatcacatcaaaaacctatgcttgtcggttggacaggctgtttgttgaattaatcatgtgggcacaagctagccgcgacaccatagatattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="53260" stop="52146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52960" g_stop="52445" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-U331379" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52960" e_stop="52445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAACTTTACTGAAGGTGATTATTGTACGGCATCAAGATTTTGAACAGAAATACATGTTAATTATGGTTTTCCTAAATTTTTAGCTTAACGTTGGATTTTCTGCTTCTGAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGATATTAAAAAGGAAAAAAAAAAG</genome_strand>
        <mrna_strand>AAAATTAAACTTTACTGAAGGTGATTATTGTACGGCATCAAGATTTTGAACAGAAATACATGTTAATTATGGTTTTCCTAAATTTTTAGCTTAACGTTGGATTTTCTGCTTCTGAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGATATTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317599" ref_strand="+" ref_description="SGN-U317599        Tomato 200607 #1 [5 ESTs aligned]">
      <seq>ggagactcaatcggaaaattcaccaactgtttatggattgcagaagcagatccctatcagcatcgccgtccgccgtctccgccgccgtcaacaacaaatatccgattcttcagttttcatctcagctctctaatccttcatatactcctttcaccccgtggatacgatacctccggttcagtttttcctgatttatcttacaatttttttatatgcgaagagaactcccaaaggtatattgacgattttgcccttgattcctgctaacatgtgtttacgaagaattgtttttcttaaactgaaggttggatttttactgctttatcaaaaaaaaaacaaaggaaaaattggagtttagttgtttctgaatggtataaaggttttgtatgttgtaggaattcgtttattttataactgtgttgtttgggccatcctgtgcacacctagactacggatacctccatcgacaacatacaccataagtaacctagaacaaatagaaagaaatcaccttgtgtttagtttctgaaaccttgtcgatctcaatggagtcctctaagtcacacccttaggttaagctttaagaaattataagtttagtgaagctgataactattggacattaaggctttgattaggaacatatattactctctctgtttacttttacttgtgtgctttcaaataattgtttttcactttaatttggcacttttaacctatattgcttggactctccaaaaattgcagccgcacccgtgttggatcctctaaaaagaggatctgacatgcacccagtaaaatgtttgaagaggccgagcaacatagcttttaacatattaagaaaagacattcccttggtgttaatcacttattccccaaattatttttcaagaccttatactaaacatcaattaagatgggcattatggtaaagtattcatattaatcattgtttcttaagagacgtgtaaagtcttaaaagtggataactaaaagtgaatgaagggaatacttgatattttcctaaagttaagctaaagtttggattcttactgctaaaaaaaaggttggatgtttactgtttctgaatgattgctaaggaactgaagtccttagagatttgaaatcttactgtaggtggttattgaaggacatgaaagttttgaacaggaatacaaaattgattgtagttctcctaaaagtgagctaaaggttggatttttactactttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="54710" stop="52866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54410" g_stop="53166" g_length="1245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1245" r_length="1245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-U317599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54410" e_stop="53166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAGGTATATTGACGATTTTGCCCTTGATTCCTGCTAACATGTGTTTACGAAGAATTGTTTTTCTTAAACTGAAGGTTGGATTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATCAATTAAGATGGGCATTATGGTAAAGTATTCATATTAATCATTGTTTCTTAAGAGACGTGTAAAGTCTTAAAAGTGGATAACTAAAAGTGAATGAAGGGAATACTTGATATTTTCCTAAAGTTAAGCTAAAGTTTGGATTCTTACTGCTAAAAAAAAGGTTGGATGTTTACTGTTTCTGAATGATTGCTAAGGAACTGAAGTCCTTAGAGATTTGAAATCTTACTGTAGGTGGTTATTGAAGGACATGAAAGTTTTGAACAGGAATACAAAATTGATTGTAGTTCTCCTAAAAGTGAGCTAAAGGTTGGATTTTTACTACTTTCAAAAAAAAAA</genome_strand>
        <mrna_strand>GGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAGGTATATTGACGATTTTGCCCTTGATTCCTGCTAACATGTGTTTACGAAGAATTGTTTTTCTTAAACTGAAGGTTGGATTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATCAATTAAGATGGGCATTATGGTAAAGTATTCATATTAATCATTGTTTCTTAAGAGACGTGTAAAGTCTTAAAAGTGGATAACTAAAAGTGAATGAAGGGAATACTTGATATTTTCCTAAAGTTAAGCTAAAGTTTGGATTCTTACTGCTAAAAAAAAGGTTGGATGTTTACTGTTTCTGAATGATTGCTAAGGAACTGAAGTCCTTAGAGATTTGAAATCTTACTGTAGGTGGTTATTGAAGGACATGAAAGTTTTGAACAGGAATACAAAATTGATTGTAGTTCTCCTAAAAGTGAGCTAAAGGTTGGATTTTTACTACTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321733" ref_strand="+" ref_description="SGN-U321733        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, KED, Nicotiana tabacum, EMBL:AB009883 | chr5:2727823-2732894 REVERSE | Aliases: None(evalue: 4e-171, score=598) genbank/nr: unknown(evalue: 3e-169, score=598)">
      <seq>gcacgagtttcgaaggataaggacagaccaaaggactgggaaaaggaccatgcaaagagggaagtgtggaatggagtggcgcgggaggttttgcagagtgagaaagaattgattgatgttcctggaaaaacaaacgagccggaaaactcaacagtggagcagaagaaacagaaagatcatgataactggaaaaatactgacagggatggaagtgagaggagaaaggaaagagatactgatttggaaggagagaggcctgagaaacgtgtcaggtgtcatgataaagaaccagaggaaggggacctggatactgaaggaggaggagaaagggaaagagaagcttttaattatggagttcagcagcgcaagagaatgtcgcggccaagagggagccccatggccaatcgcgatcctcgttttaggtcgcacactcatgaaaatgaaggatctcaagtgaagcatgatgtatctgctgtcaattacagagttggtgagtgtatgccagaactgattaaattatggaaggaatatgaatcatccaaagcagatgaagcatctgatagctctccaagtgatcctactctagaaattaggattccagctgaacacgtatcagctacaaatcggcaggtgagaggtggccaactatggggaacagatatatacaccaatgactcggatcttgtcgcagttcttatgcacacaggttactgtcgtacaactgcgtctcctcttttgcctactattacggagttacgtgctactatcagggtactacctccacaaaattgctacatatctactctgaggaacaatgtgcgatcacgtgcgtggggagctgcagttggctgcagctatcgtattgagcggtgctctgttgtgaagaaaggaggtggaacaatcgatcttgaaccttgtctaacacattcctcaaccttggagcctactcttgctccggtggcggtagagcgcactatgaccactcgagctgcagcttcgaatgcactacgacaacagaggtttgtacgtgaagtgacaattcagttcaacttatgcaatgagccttggctcaaatacagtatcagtgttgttgctgacaagggtctaaaaaaggccctttttacatcttcacgcctgaagaagggagaagttctttacttggaaactcattctaagaggtatgagctctgttttagtggtgaaaagatggttaaggctacaacttctctgatgcatgaaatggatgttgacaaacctcaaagtcacaatttacacatggcaaacggagaaaaaaatggagtgaatggtgagaatacgatggtagatatgttccgactgtctcgttgtaagaagcccctgcctcagaaactaatgcaatcagttggaattcctttgccccttgaacatgttgaggttttggaggagaatctggagtgggaaaacattcaatggtcacaaactggtgtttggattgctggaaaagaatatcctcttactagagcgcattttctttccccaaattaggcaatgctttgtaatagatacagtttattctataagacaaagatgtattgggatttatactgattagaatgataaattgtggaactcatgaacaatgttgttttgtgaacattgtgcatatgttgatttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="80451" stop="67070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80159" g_stop="79713" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79712" i_stop="78276" i_length="1437">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78275" g_stop="78268" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="454" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78267" i_stop="75452" i_length="2816">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75451" g_stop="75276" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="630" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75275" i_stop="73523" i_length="1753">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73522" g_stop="73462" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="691" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73461" i_stop="72242" i_length="1220">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72241" g_stop="72143" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="790" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72142" i_stop="71302" i_length="841">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71301" g_stop="71207" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="885" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71206" i_stop="70495" i_length="712">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70494" g_stop="70381" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="886" r_stop="999" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70380" i_stop="69403" i_length="978">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69402" g_stop="69335" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1000" r_stop="1067" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="69334" i_stop="68392" i_length="943">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68391" g_stop="68281" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1068" r_stop="1178" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="68280" i_stop="68039" i_length="242">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="68038" g_stop="67804" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1179" r_stop="1413" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="67803" i_stop="67613" i_length="191">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="67612" g_stop="67360" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1414" r_stop="1666" r_length="253" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-U321733" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1667</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80159" e_stop="79713"/>
          <exon e_start="78275" e_stop="78268"/>
          <exon e_start="75451" e_stop="75276"/>
          <exon e_start="73522" e_stop="73462"/>
          <exon e_start="72241" e_stop="72143"/>
          <exon e_start="71301" e_stop="71207"/>
          <exon e_start="70494" e_stop="70381"/>
          <exon e_start="69402" e_stop="69335"/>
          <exon e_start="68391" e_stop="68281"/>
          <exon e_start="68038" e_stop="67804"/>
          <exon e_start="67612" e_stop="67360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGATCTTTCGAAGGATAAGGACAGACCAAAGGACTGGGAAAAGGACCATGCAAAGAGGGAAGTGTGGAATGGAGTGGAGAGGGAGGTTTTGCAGAGTGAGAAAGAAGTGATTGATGTTCCTGGAAAAACAAACGAGCCGGAAAACTCAACAGTGGAGCAGAAGAAACAGAAAGATCATGATAACTGGAAAAATACTGACAGGGATGGAAGTGAGAGGAGAAAGGAAAGAGATACTGATTTGGAAGGAGAGAGGCCTGAGAAACGTGTCAGGTGTCATGATAAAGAACCAGAGGAAGGGGACCTGGATACTGAAGGAGGAGGAGAAAGGGAAAGAGAAGCTTTTAATTATGGAGTTCAGCAGCGCAAGAGAATGTCGCGGCCAAGAGGGAGCCCCATGGCCAATCGCGATCCTCGTTTTAGGTCGCACACTCATGAAAATGAAGGGTATGCCTTTTCATTTGATGATTGACTTGACACTATTTATGCTTTACTCATTAATAATGATCGATAGATAATCCATCGCCTACAACCAGCAGACATAATGGTTCATTAAAACTCTAGATAGACATCATAGACTCTATCTGCTACAATCCTAGAGTTTGATGATGTGAGAACTATCATATGTTAGAGAAATACGTGTCTACATTCATACCCATCTCAATTCAATTAATTTGTTGAGGGGAAATATTATAGAACTAATAAAAAAGAATAAGGAAAAATAATAGAACTTTCCATAGGATACCTTATGAGATCCTGTATTCAATTACAGAATATTTTTTTACCTTATATGCATAGAGAATGCTTACCTGTCTTGTGCAGAATCTTATATGGGTTCCTCTTGTACATTGTTAATCAACTAAATCAATAAAATGTTAAATTTAATTTTCACAAGGTAGTTGAGCCTTTTCGGTCTTGGTAGACATTCATACAGCTTCCACCTATAAGAGACGACCTCATGCCGCCTGCAGGTTATTGTTTTTCTTTTTTCCTTTTTGTTTCCTAGCTATCAACACTCTCATCCACGAGTGGTGTCGACTGCTCTGACCTCGTTTTTCGGCTATTAGCGCTGCTCCTCTCTTTTTCTAGCATGCCGGTCCTCTTTTTCCTGTGACCAATGTCACTACTATCTTCCTGAGGCAACTGCCACTACTCATTTCTGTGGTGATTATTCTGGATGCTTCTCTCTTCAACTACCAATACCACCGGTGTTGCTCTTCTCTACAGCAGACGACCTCCTCCTCTAGACCTTGAATTTTGGTCATTCTTCTGCCAATTCAAGTTTCCGATGATGTCTTGGAGATCTGCGACACCATACCTCTATTCGATTATTGGAAATAGATCATTTTCTGGTTCCAGGTCTTTGGTTCAACGGCAAAGGTAGTACAACGTTGTGTGTGTGGTAGGTGCACGCCACAACTTCGAATCCTATTGGGGAACTAGGTCTTGTGTTTAAATGGAGAAGGATAGGGGTGACCTATTTTCCACAGACTTTGAAGCCTAAACAATAGACTTATCGGTTATAAAAAATAAATAAAAGAAGAGTACATTATTTCTCTGTTTCTGAATTCAATTATATTTTGGAATTCTTCCATTTCCCTGTCCTGAAAATTCCTCCCGTCAAGCAATTCAACTAGGTTATCATAGACTTACTTGTCAAAGAATAATATATGGGATGTGTTAAGTTCATTTTCTTGTCTAGCAACTACAAAATACTCATTTTCTTGTCTTGCAACTACAAATTGTTAATCTGTGTTGAAAAAACTTTCTATAAGTTATTAAGCATGGATTTTATTTCCTTTTAATACCACTTAGATGATATCTGGACATAGATGTTTCTTTGATTGTTATGTAGTGTAACTCTTCTTCTGTCTTTCTGTGCAGATCTCAAGGTAAGCTGTTAAAGTACTTATCTTGGAGTTGTCTCAAATTGGTATCATCCAGGAGGGAGTTGTCCTTGGCATTCATGCTTGCAGATTTGTTTGATTCTGAGAAAATTGCTAATTTAACTAGTTAGACAACATTGATCCCATCTTTTATTGGTTGAGATAGTTTCCATGTTAGGAATTGGTGTTCTTTTGGCCAGCTGTTTCTGCCTTAGGTCGTAGATATTCCTATATGCAAAATCATAGGCTCACATGTTCCTGCTTTTTTCTCCACTTTTCATCATAACTGCTTTTTGTTTCTGTTTATAGGTTCATGAATCTCCTTCTGTAGAAGTGTTATACTCGAACTGTTTTGAATGTCTCGTTGGTCATTCCTTTTCCAGCATGATGAGAAAGGAACTCTGTAGATGTCCTGATTCATTTTCTGCATCTCATGTGCGCATATATTTTTTTTCTTTCTGGATTTACTCCATTGATTGCTTGAACTTGTTTGCACGGTATATCCGGATACTCTATAAGTTTTAGCTATCCTAAATTTTGTATTATTTTGGACCGTGAACTGCAAATTTTGTGCCATTTGTTTGAATTTGTATAACCCTTGTAAATGCCTCCACAGTTATAAAGTTCTGTTGTGCATTAAGATAGTGATGCAGTGACCAATTTCTATGTTTAGTGGCCAAAAAAATCAGTAGTTCGTGACCAAATTAGCATGATGAATAGTTGAAAGCTGTTCCCACCAGAATTAGAGGACTGTCTTACTTGAAATGCTTCAAGTCATATTAGATGACAATGCATATATCTTTTTGCATCGGAGTCTTCTTGTAAAAAACACTTTCTGGCTACATGTTACATGTTAAGTTCACTTCTTACAACCATCTCAAAGGTCGTTTGACTCGTGCGCTTGAATCAGGGGACTGTTTGCTGGATTTTATAAAGCCAATCAACATCGTCAAGCTTGTGCTCTTTCTTTCTTTAGATAACCACCTTTTTTTTTCCAAAAAAATCTCTTTATACCTTTTTTATTCATCAGATTGAGCAGTACTTCGTAACATACTAAGCTTTTCAAAAATAGTCTATCTGTGCAATCTACAATTAATTTAGGAACTAAAAGATCCTTTTACACGAAATCATACCCAAAAATTAACCAGAAAAAAGTACACCAAAACGGAGATTAGGTGAGGTGATTAGGCGAGAAATCTAAGTCATAGTATGATTATCTTTTTCTTTGAGAATATGACTTTTCCTTGTATTTTTGCCTTTTAATAAAGCTGTGAGTTGCATTGATCTCCTTCCTAGTCTGCCAAAATTACAGTGTCCTTCTGATTCTGATGCGTTAATATTTCATTACAAATTTACAAATTCTTCCCTATCCCCGTTTCAAATCAAATCTAAATTGAGGAATGAACATTGGCCAAATTCCTAAATAATCCAAAAAGGTCCACAAAAATTAACAAATTAAGAAGGCTAAGTCAGTCATTATCAGGAGAAAACATGCTATTATATCTGTTTAGCATATATCCGTTCCCATTTTCTTCCTTTGTGTCTTTAGGGAGAATTAGGGAAAGTGACTACTAATTCTTAAGTGTCTGTTTAAGAAAAAATTTAAATTGAAAATGTTAGCTTAACCAAAGTAAAAATAGGTCAGAATTGTTACTTGAGCTCAATCCGTAATCTACGTCGGTGTTTTTTTGTTATATTATTGCACATTGGTTGAGGGAATGAATTGTTGTGTGCTTACATGTCCTTGGGCCTCCTCATGAGCTAGCCTTTGTGATTGAGTAAGGCTTGAGGTTCATTTTATTTACATGGTAGCATAGCTAGAGCCATCCCTATTGTTCCACGCTCCAAGTGTTCCATGAGAGGCTTGGGGGGTAAGTATTAGAATGTCTCACAGTGGCTGAGAGATTGTTGTCTCCGCATATTGTTTCGAACAGTCCTAATATCATGTGCTAACTTTGGAGTTGAGTTAGGCCCAAGGTCCAATTTTTTAAAAAAAATGTCTGCTTATTTTAAACATGAAAACTTTCTATTTTGAATTAGAAAAGTAACAGCCAGACATTACTGGGGATTTTATTTTGTAGTTTCCAGGATTTAATTTTTTTACGTTGTCGACAAAATATAGTGGTAATTGTTACATTTCATATCAACTAAATCAAAGACTCAGATTATCAGCCGCACTTCGTGCGAAACCCAGCTTATAGCATACAGCTGTCATCTCATATTTGTGGAGCTGTCAGATATCACATGTAATCTATTCTAGTAAAGAATGCTATTTGCTTGTTGTGACCCATCACGGTACATCGTATGCTTGAAGTTGCGGATTTGGTACTTGTAACATATGCAAGTGATTCCGATCCATTAAATTCAGACCGGCATACCTACAGATCATATTACTTATATAGTGGAAGGGATTTATGAAATTCCTCTTTTGAGTCTAATCAAAAGAGCAAGTGGATCGAACTGTTTCTTGTCTCTGCTTTGCTTCAGAGTCTATGCGTCTAATGAGTTCTGTGATGATAAGTTCTGTAATTTCTTTTTTCTGTATGAAGTAGCTTGTAATAATAACTTTGATCTCAGATTTTTTGGGAAATATTTGTTGCTTTCACCTGCCATTGAAAAATTAGTCGTCAGTAGGTTAGGATGTTTTTCTAACTGTTTCATCCCAGTATGCTTGCTGCTGTTTTGAAACTGGCCAATTATAGTACAACGACAGAACAGAGGCTGTTTATTGATTAACTGACTAAGATGGGATGCAAAAATTGTTGTTGACTACTTAGTACTCATGCACCATATATAAACAAATGTTTCCTTTGTCTTTGCAGTGAAGCATGATGTATCTGCTGTCAATTACAGAGTTGGTGAGTGTATGCCAGAACTGATTAAATTATGGAAGGAATATGAATCATCCAAAGCAGATGAAGCATCTGATAGCTCTCCAAGTGATCCTACTCTAGAAATTAGGATTCCAGCTGAACACGTATCAGCTACAAATCGGCAGGTAAGATTGGAGTGGTAGCAGAGGATTCATATAACACCTTTTTATGTTTTATTTCATTTTCTTCTATGTGTTCTTCAAAGATAATGATCGTCCTAATTTTAAATAAAATCTCTTTCGATACTCCACTTGGGGGTTTTCCTTTCCGATCATTGAACAAGAAAAAGGGGTTGCACCGGACCCGAGGGTCCTTCGCACACAACCTCTCTATGTCCGTGAGTTAGGGTTAAGGTCTGCATACCACCCTCCCCAAACCCTACTTATGGGATTTCACTCGGTGTGTTCTTGTTGTTGACCAACCAGAATTTTCCGGTGACTCCAAAGTCTAACCAATACGTTGTTCTTTCTTCTTCAAATTTTTTCTTCCTTTTGTTTCTTTTTCTTTCTTCTTCTTCAGGCTTCGCAGTCACTTCTACCTTCTTTTTTTTTCACTGTTTTGATTTTTGTTCTGTTTATTTCTCATTCAACTTTTAAGTATGTACTATCTATTTTTAGTTTTTGAATTAAAATATTTGCTAATATGTTATTGCTATTGAGATTTTTATTATTTTTATATGCAATTAAATATTTTACTTTTTTGTTAATAATTGTGCCGCACTTCAAAAAGGCGGCGCACCTTGCTGCTCGCCTCACCTTTTGGTGAGGCAGACCCTTGTCGCCTTTTGCCATCCAAAACACATTTATTCCAAAAAAAGGAGGGGCTCTATACAGGAGTCTAGCCTAATAAGATAAGTAATTAGCCTATAATTAAATCTAGATATCCTAAGCTATCCTATTGTAGTATTATGTAAGATTGTTCTTAATTACTTCAATAAATCTAGGCATGTGTGAATGTATGCACATATGATATTATTTATAGCCTGTTTGAAGTAAGCCGAGTAACAATAGTTGATAAGCATCAATTGCTGAAAAGCACTTTTAAGTGTTGGAACTGATTTTACATATTAACAGTTACATGTCTGGACATATGTGCTGACATTAATAACAAATAATTGGTATCTTTGGTAAAAATCTCGTTATTTCTGTTTAAAATGACTGAAATACCCTTAAAACTATTTTCAGAAATTATTAAATTTACAAGTGCACATGGAAAAGAGCTAATAGCGCAGTTACCTTTATCTCAAAAAAAAAGAAGAAGAAGAGCTAATTACGGATATCGAAACTAGAAAGGAGGAGATATGGATTTAGTTTTAGGAATGGTACATCAACTGCAACAATCTTTTTTGAGGATAAAAGAGTTAAGAGTCTAGTCAAAGCAAAAGTGCTTAGAAGCTGAAAAGTCATAAGTGACCAACTTATAGCTTTTGCCTGATTTTGACTTACAAGCACTTGGCTTATAAGCTATTTCGGTGTTTCTCAAACACTGAGATAAGCCCAAAAGTGCTTAATAGTTGGTTTGATCAGTTATAAGCTTACTGAACACACCCTCTTAATCTCGTAACAATAAAAAAATTGTGTGCAACATTAGACTGGTCAATTGATGGACCAAATTTGACTCGAGATGCAATAGAAGAGAGCTTCTGAAATCTAATATAAGTGTACCAAGCGTCATCACTCTCTCTCTCTCTCTTATTATGTTGGGTGGATAATACTTGTTCAGCAATTTTATCCGTTGTATGCATATTCCTGCTACTAATTCTGATACACATCTCATATCCCCATGCCTACATCTTTCTCTCAGTCTTATCTCTTGGCTTTGTAGTTTGGATTTGTCTAATTATGTTATATTGTCCTTTGAGTACTACACCATTTGCAGGTGAGAGGTGGCCAACTATGGGGAACAGATATATACACCAATGACTCGGATCTTGTCGCAGGTTTGTCCTTGTCTCAATAATATTAAGGCTCCATTGTGCACTCATGTATGTATGTATGTATGTAGGTAGTTTATGCACTTAGTGAAAGTAAAGGGTAAATTATGAAAAACAACTTAGTTTAGCCCACGGCAGTTTCCAATTACAACTTTCTTGTTTCTCCTTGTGTATTGTGGGAGCGGCTTGTTGTTCTTCCAAAAGGAAAATATTTTTGTTGATTAATTTTTGAGGTATGTTTTGGAAAAAGCTAGAGAATCTATGAAAATCAGATGTAAGGAAATGCATATACCTCTAGACATGCTTTCCAGTTTCCACAATTACATTAAATTTGTGAAATCAGGAGCCTCTAGCTATGCCTCATTCTGGATTTACGGTAGTGCTGGTTTATTCAGGGTTTGTTGTGAAAGAAATGGGCAGTGTGGACTTGGAATAATGAATGGCTGCGCAAGTGTATAGTTATAGCATTTTTTAGTAGTGATAATGGTCTGGTCTGTAGGTGTTTTCTGACAGTGGTGGCAGCTATGCAATATGGTTTGAGACTTAACCTGGAATTGATCATAAAATGAAACTTCCTTGATGTGGGAACATGACAGAGAGAAAAGAGTTGAATATGTGGTAAGAGACAAGCACACAGGTCTATGGATGAGGAGGTGTTTCTTTGGATGGAAGAGAAGAGTATGTAGGAAGTCCTTGTACATGATGAAAAGATGGATTAGATTGGAAGGTGATGAGTTCATCTTGACTTCACTCACCAAATAATTTGCACTAGATAACAAATTCATTGTATGGTAGTTTGATGCATTATGCCACGAACTTCTCCAAACCAACAGTGTTTTAGGGTTTCTAGTTTAAAGGGTACCTTCATGTGGTGGATTCTTTCACTAGTCAAGCTTCCATTGTTCCTCGAATTTTTTAGAAATATGATCTAGTCAATTGGCCTTGTAGATAATTATTCTAAAGGGACAATGTAATTGTCCTGAACTTCCCTTGTTGTTGGTTGTGGTACTGGTTTCTGTTTGTCTTCCATTGAAGAGGCACATATATATGCTCAAATCATATCAATTACTATCAACTTATCTGCTTGTCCATTCAAGCAAACTTGGGAAAACTGTTAAGCCTTGTGCCTCAGAATTGCTTGAGAACTTCCCCATGTACTTTTCCTAGTGATCAGGGACAATACAGATCATGATATCTATTAACTACTGTTTGTCTTGTTTCTCCAGTTCTTATGCACACAGGTTACTGTCGTACAACTGCGTCTCCTCTTTTGCCTACTATTACGGAGTTACGTGCTACTATCAGGGTACTACCTCCACAAAATTGTAAGTCTCCTGCAGAAAATCTTGCTTTAAAAATGCTATTGTTAGGAAACAAAGCCTGTTCTACATATGGTATAATGTTTTAAAGTTTTCTCTTGGTAAGTTGTTTTGAGCTGCACTACAACCTAGTGGTCAATGAAGTGGGTTGAGACATGAGGTTTTAGGTTCACAACCATAGCCTCTTTTAGTTTTTCTTTCCATTCTCTCTTTCTCTGGCTTGCTCTTTCCTTTTTGGTACTTACCTAATAGTTGATTATGAATCTCTCTGAAGATTTGTGGTGAGGACCTGGATGCATGCATATTTTTTTCACAATGTTAACTAGTTTGTTCCTTGTAGAGATATTCCCCCACAGTGTTTTATACAATATTGGCCCTAAACTTCCACTTTTTAATTTTCCTGGGCCTTATTTTGATTAGTTAAACCGATATTAAATCCAAGCTTCTGCAAGTTAACAAGTTGCTGATCCCTCGAAATGTGCATCTTATATCAACAGTACTAATTGATTATGGTAAAACTGGAGAAACTATGGAGGTGCAAGTGGACAAATTGCTTATCCCCTTGAAATATGCAGATTGTTCAACTATACCAATTGATCCCTTGTGTCTTTGTTTGTTCTTCTTTTGTGGACATCTTGGCCTTCAAATTTTAGTAGGCGCTGTACTGTCGTTGTGACATTTCTTTACTAATGGGTAAAAAGATAGATACTGACTAGTTGTTCAGAAACTTAGAATCTTTTGCATGATTTCTGTGAGTAAAATCATAAATCTGTTCAAATTAGTTGTTGCATCCCAATTCACTGCATTTCTGATGTTAAACTCTGAATTTGTTGTTGAATTTATGAAGGCTACATATCTACTCTGAGGAACAATGTGCGATCACGTGCGTGGGGAGCTGCAGTTGGCTGCAGCTATCGTATTGAGCGGTGCTCTGTTGTGAAGGTGTGGATTACCATTCTTCATTCCTTCCCTTCTGTTCTTTCTGGTATAGCACAAAAAAGTTTCATTTTTTTTTGTAAGGTAAATAATTTTATCAATAATTGGAACTGCACTTCTTTTGAAAATAACCTCTCTGCCTGACAAGGTAGGGTAAGGTCTACCTACCCTCTATCCTCCTAGACCCCACTTAGGGAAAATACTGGATATGTTGTTATTGTAATGGGGAAATATCCTGTTTACAAGTGATATGCCAAAACGTAGAGAATCTTTATCAAAATATGATTCTGACGAGCAGCTCCTAATTTTCTATACAAATTGTAACATCATGGGTGCACCAAAAATAAACTACGAATCAGACGCTATTCGTCAAATGTAGATATTCGTTCATCCCCTCGATCCTACTGAACCCGCAGGAGTTCTAGTGGGGCAATATCCAGGCTCTTCTTCAAATTTACTTTCTTAATTTCTAGTGGAGAGTCTCTTTCTCTGTATGTACTTTGTTTTGCCAAACTTTTAGTTTTCATTAGATGATTGTACATACTTTGTGGATGGACTTGCATTTACCAGCTATTTTTGCCTAGATACACATTTATTTACTTTTGATTTATATATGCGAGTAAATTCTTTGTATAACTATTGAATGTGCAGTTATCTCTATGTGGAACTTTGTACCACTTCCTATATAACCTTTTTGATTATTTGTCCTGTCCTTCAGAAAGGAGGTGGAACAATCGATCTTGAACCTTGTCTAACACATTCCTCAACCTTGGAGCCTACTCTTGCTCCGGTGGCGGTAGAGCGCACTATGACCACTCGAGCTGCAGCTTCGGTATTGTTTCACTTAAGTAGAAGTTCATTCTGCTTTCTAAATTTGTTAGTGTTATGTGACAAAAATCAGCTGCTCACTTTCCTTCTCTGGTAGCCTAAAATTGTTTATCATTCTGCTGTTCTCTCTATAAATAGCATAATCAGCTGAAAACCATCTAGGCGGGGACTATTGCTGGCTTTTTTCTCTTTTCGATTTCTGTAGGCTACTGCTAAACCCTTCTGCACTCTAAAGCTGTCAAACTAACATCTAATGGATGTAATCCTATGGATTTAAACAGTTCGACAGAAAAGGATAAACAAAGATAAAGAGGATTCTGGTTTATTCATGGGAACATGATTTTGCCTCAACTGTATTATCAAAAAAATGAGTTTGCCTCAACTATCTTTAAATTTTAAAATAATAACATAAATTAAAATTCTGAAACTTGGAACTTCCTGCATCTATACCTTTTTGGAGTGATCGAATTCCTTCTATATGATTCATCGTATAAACAGCCCAAGTACATCACAGTTGAGTTCGAGATAATACTCGGTCTTTATACATCATGTTATCATCTTATCTTCATTTTCTGTGAGATGTATTATGCTGCGACTATTTAGGATTAAGGGAATGAACTCTCACAGTTCTGCATGTCTAAGATTAGGCTTCTCACTAGCCTGCATGGAGCTAGGGACTTGTCATGGAAAACTCAATATGACACAATGTAAAAAGTTACTTCCTCCGGATTTTGAGCTTTCCGCTTGATCCAGTGGTAATGAAAACTGCAAATAACTAACTCAAAATAGTTCTGACACTCCATTTTAGGTTAATCAATGTGATCTGATGATCCTCTTTTTGTTATGCATCTTTGCTTAAGGTACTGAAAGAAGGATATCTAAACTATGTCTTCTCTTTTAATCTTTGTTGTAGTGTATTGTCGTTTATTATTTTTACTTTAACTCAGCCCCTCAACTTTTCTGTTGGTTACTCTCTTTGTAGAATGCACTACGACAACAGAGGTTTGTACGTGAAGTGACAATTCAGTTCAACTTATGCAATGAGCCTTGGTATGTACTGATTTTCTGGGTCAGCTTGCTCTTCAAATAGATGTTTTTTTCCACTCTTTAGATACAGAACTTTCCAGTTATGCATAGACTCTTGATATGTTGTTATTGTTGTTGTTGTTATGCATAGACCCTTGATGTGGTATAATACTCGGTCTTCTTTTCTTCTCATTCTGATTTTGCTGTTGGGTTCTGTTCATAACAAAAGAAGTAATTTTAATACTTTTAGTAAATAATTTACGGGGAGCAACCAGTTTTGTTTTCGCACTTTCTAGTGATTTATCTGAATATATTTTTCAAACTTATTGGAAAGGAGAACCAGGTAAATTTCTGTCAAATCATCTTTTCGCTTAAATAATCTGTATTGCTCAATAGTTACAATTTGTTGCTATCCTATGCAAGGGTTGAGGGCAGATGCTAGTGTCTATAAAGATAAATCTCTAATAAATCCTCAAGACTTATCTGCATGGATCTGTGAAGGCTTATCTGCATTACTTATCCTTTTGTTCTAATTTCGATACTTGTTAAAAATACTGCGCGTATGACTAGAAGTATAACTTCGAAGCAGTAAGAGTGATTCTTTGGAGGACTCTTTAGTTTTCTTAATCTTGATCATAGGGTGCTTGGGACTTTAAGGACATTTCCCTGGTTGATATGGTCTTTGTAATCTTGTGTGGAGATTTTCCCTATATGTTAATAAGCACTTGAGGTATGAGTTGGTATATCAAGGATGATCAATGCTATGTTTTACTTGTCATGTTCTATCCTCTGACTTTTGGTTTTGAGTCGGTAACAGAACTGGTGGTTTGATTGATATCCTTGAAAACAAAGCCCACTTTACTGGCTCATTTACCTTGAAAGGTTCTTTTTGATATTTTATGATGAGCTGTAGCCTATGGTTTATCCAGGCTTGTATTTACTTACTGTTTCTCGTTTCTTTCCCCAGGCTCAAATACAGTATCAGTGTTGTTGCTGACAAGGGTCTAAAAAAGGCCCTTTTTACATCTTCACGCCTGAAGAAGGGAGAAGTTCTTTACTTGGAAACTCATTCTAAGAGGTAACCACTGGCTTCACTCCTTTTAGTTTTTACCACCCTTCCATGGGTAAAAATGGGTAAAAATGTAACTCCATGCAGCTCTCTTAGTCTCTTATATTCCTTGCATGTTTCCTCTGGATCAGAGCGTAAAGGAAAGAACAATCATTGAAAAAGTGATTGATGGTGTGATCTTTGATACTTTTATACCTTCTACTGTGATCCTCATTTTCCTTCACTTCCTGATACTTGTTAATTACTTGAAGGTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAGGTACTCATCCTTGTTTCTTCCCCATTATATTGCTCTGACTCTTCTTCAAATGCCGATAGATGCATGTCAAATCTTCTAAAAAGCAGTGCATTTTTGAAAAAGTAACATGTGCTGTGAACCAAGGTTACTCCCCTTGTCAGGGTGTACTTTTACCTTGATTGTCTAACAATGTTGTTATTAACTTTTGGAAGGTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGCTTTGTAATAGATACAGTTTATTCTATAAGACAAAGATGTATTGGGATTTATACTGATTAGAATGATAAATTGTGGAACTCATGAACAATGTTGTTTTGTGAACATTGTGCATATGTTGATTTCTTCTTCCAGCTT</genome_strand>
        <mrna_strand>GCACGA-GTTTCGAAGGATAAGGACAGACCAAAGGACTGGGAAAAGGACCATGCAAAGAGGGAAGTGTGGAATGGAGTGGCGCGGGAGGTTTTGCAGAGTGAGAAAGAATTGATTGATGTTCCTGGAAAAACAAACGAGCCGGAAAACTCAACAGTGGAGCAGAAGAAACAGAAAGATCATGATAACTGGAAAAATACTGACAGGGATGGAAGTGAGAGGAGAAAGGAAAGAGATACTGATTTGGAAGGAGAGAGGCCTGAGAAACGTGTCAGGTGTCATGATAAAGAACCAGAGGAAGGGGACCTGGATACTGAAGGAGGAGGAGAAAGGGAAAGAGAAGCTTTTAATTATGGAGTTCAGCAGCGCAAGAGAATGTCGCGGCCAAGAGGGAGCCCCATGGCCAATCGCGATCCTCGTTTTAGGTCGCACACTCATGAAAATGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCATGATGTATCTGCTGTCAATTACAGAGTTGGTGAGTGTATGCCAGAACTGATTAAATTATGGAAGGAATATGAATCATCCAAAGCAGATGAAGCATCTGATAGCTCTCCAAGTGATCCTACTCTAGAAATTAGGATTCCAGCTGAACACGTATCAGCTACAAATCGGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAGGTGGCCAACTATGGGGAACAGATATATACACCAATGACTCGGATCTTGTCGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTATGCACACAGGTTACTGTCGTACAACTGCGTCTCCTCTTTTGCCTACTATTACGGAGTTACGTGCTACTATCAGGGTACTACCTCCACAAAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACATATCTACTCTGAGGAACAATGTGCGATCACGTGCGTGGGGAGCTGCAGTTGGCTGCAGCTATCGTATTGAGCGGTGCTCTGTTGTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGGTGGAACAATCGATCTTGAACCTTGTCTAACACATTCCTCAACCTTGGAGCCTACTCTTGCTCCGGTGGCGGTAGAGCGCACTATGACCACTCGAGCTGCAGCTTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCACTACGACAACAGAGGTTTGTACGTGAAGTGACAATTCAGTTCAACTTATGCAATGAGCCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAATACAGTATCAGTGTTGTTGCTGACAAGGGTCTAAAAAAGGCCCTTTTTACATCTTCACGCCTGAAGAAGGGAGAAGTTCTTTACTTGGAAACTCATTCTAAGAG..................................................................................................................................................................................................................................................GTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAG...............................................................................................................................................................................................GTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGCTTTGTAATAGATACAGTTTATTCTATAAGACAAAGATGTATTGGGATTTATACTGATTAGAATGATAAATTGTGGAACTCATGAACAATGTTGTTTTGTGAACATTGTGCATATGTTGATTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346218" ref_strand="+" ref_description="SGN-U346218        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: conserved(evalue: 1e-06, score=57.8)">
      <seq>tgaattttttcgctccttcttttgctgcatcttcaccgccggttgtggttctttaggttccttaatttatatgctgaaaaagccagaatatgagtggtactccgaacaaaagacctcacgaggatggcggaaatggtgggagtagtaaccatagttactcttctgctccaaaatactcacatgatgactctggtgcatttcccaaggtgatgagctcaggaacacctgaatatcatgcctcctttgatgagggccagaatgctcggatgccgaaaattcaacggactgaatcttcacaagatgcaaatagaagatctcctgtgcttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="82495" stop="80510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82195" g_stop="82155" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82154" i_stop="81098" i_length="1057">
            <donor d_prob="0.807" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81097" g_stop="80810" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="329" r_length="288" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-U346218" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82195" e_stop="82155"/>
          <exon e_start="81097" e_stop="80810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTTTTCGCTCCTTCTTTTGCTGCATCTTCGCCGCCGGTAAGGTGAACGGAAAGTTCACTACTTTTTATTTTGGGGATTTTCTTGATTTTTGCTGTTCTGTGTGTATATAATTAGATTCAAAGATTTAGCTTTTTTTTGCTTGTCTAGGTTTTTTCGGTTTGCAAATCGTATGTTAATGAAATGGAATTGGAAATCGCTGAAGAATTGTTGTGGCCTCGTGATAAGCTTCTGAATGTTAAATTCTTTTGAGATAAAGAGAACTTTGAATTTGCTTGAAATGATTAATTTTTTAGTGTTGGGATGGAATTGGAAAACCTAACTGATTTTAGAGTGAGCTCTAGTTGATTGATTGATTAATCACTGTGGTTTTTGCTGTATTGGGTGTATGTAATTAGATTTAGAGATTTAGTTGGGTTTATCTGTGTTCTTTCTGATATACTATTGTTATGAAATGGGATTGGGAACTGCTGGAAAATTGAAAATGTTAATTCTTTTGAGATGTAGAGAATTCTGAATTTGCTTGAAATGACAAGCTTTTTTAAGTGTTAGTATGAATTTGGAAAGCCTAACTAATTTTGTAGTGATGCATAGTTGATTGATTACTCAGAGTCTTTTTTTTTTTTTAGTATTTTTGTTTTTCCTCCCTTTGATGGCGTGTTGGTTGAACTAAAAATTAATCTGTATAGGGAAGATAGGTATGATACTGATTGAATCGAAATGGAAATGCTGGTCCACCAATTATGTTTGCTCATTATTATATCAAATTTTGAATTTCATAAGCTTGCTACTAACCAAAGATATAAAAGATGATATCTTGCCTTTAATTGAAAAAGATGATACTTGCCTTTAATTGAATTCACAAAATAGAAATAAGATCTATGGTTGTAGAATTTTATTGAGACATGAAGCTAGCTTGCAAGATCGTCACTATCATGTGAATGTTACTTATAAATGGTTTTGCATTTATTAAGCTGTTCGTGGATTTGGTGAAAAGTTTATAGATTTGTTTGCCTAAACATGGTTTTAGTTGTTATTTTCTCAGAACAACATCAATATAGGTGGATGACATTCATCAGGTTTTAATGTTTTGCAGGTTGTGGTTCTTTAGGTTCCTTAATTTATATGCTGAAAAAGCCAGAATATGAGTGGTACTCCGAACAAAAGACCTCACGAGGATGGTGGAAATGGTGGGAGTAGTAACCATAGTTACTCTTCTGCTCCAAAATACTCACATGATGACTCTGGTGCATTTCCCAAGGTGATGAGCTCAGGAACACCTGAATATCATGCCTCCTTTGATGTGGGCCAGAATGCTCGGATGCCGAAGATTCAACGGACTGAATCTTCACGAGATGCAGATAGAAGATCTCCTGTGCTTCCA</genome_strand>
        <mrna_strand>TGAATTTTTTCGCTCCTTCTTTTGCTGCATCTTCACCGCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGTTCTTTAGGTTCCTTAATTTATATGCTGAAAAAGCCAGAATATGAGTGGTACTCCGAACAAAAGACCTCACGAGGATGGCGGAAATGGTGGGAGTAGTAACCATAGTTACTCTTCTGCTCCAAAATACTCACATGATGACTCTGGTGCATTTCCCAAGGTGATGAGCTCAGGAACACCTGAATATCATGCCTCCTTTGATGAGGGCCAGAATGCTCGGATGCCGAAAATTCAACGGACTGAATCTTCACAAGATGCAAATAGAAGATCTCCTGTGCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324443" ref_strand="+" ref_description="SGN-U324443        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT5G08500.1 | Symbol: None | transmembrane CLPTM1 family protein, contains Pfam profile PF05602: Cleft lip and palate transmembrane protein 1 (CLPTM1) | chr5:2748218-2751772 FORWARD | Aliases: F8L15.19 (evalue: 8e-125, score=443) genbank/nr: gi|50924526|ref|XP_472623.1| OSJNBa0064D20.9 [Oryza sativa (japonica cultivar-group)] >gi|38346578|emb|CAE04225.2| OSJNBa0064D20.9 [Oryza sativa (japonica cultivar-group)] (evalue: 8e-123, score=443)">
      <seq>tttgatttcctggcattcaagaatgatattcaattttggaataaaaacaagtccatggaagggctatctgcaaaatcagtggtcgtgaactttttctgccagtttattgtcttcctgtatttgcttgataatgatacttcatggatgatacttgcaagttctggtgttggttgttgcattgagttctggaaaatagggaaggccatgcacattgagattgacagatctggtagaatacccatgttgaggttccgagatcgggaatcatatgctggaaataagactaaagaatatgatgatcttgccatgaaatatttgtcttatgtgctgttcttccttgccgtgtgctttgccatatactctctaatgtatgaccgccacaagagttggtattcatggatcctctcatccctgacaagctgtgtttatatgtttggttttgttatgatgtgtccacagttgttcatcaattataaactgaagtctgttgctcatttaccttggaggcaaatgacctacaaatttcttaataccatcattgatgatttgtttgcatttgtgataaaaatgccaatgcttcatcgcctgtctgtgttccgtgatgatcttatatttttgatatacctatatcagagatgggtttatccagtagataagaaacgggtgaatgagtttggttttgctgcggaagatgtggatcaagctgccagtagttcagatactcccgcacttaaagaagacgagaagaaaactaactaatctaaatctctcacttaggcttcagtacaacatacttcttgttttggatgaactcaacacctgcaacgatgatgagttgcttcaggacgtttagtaatttctcaggatctttggttacaatattcagattcgagtaacttaatcgagaattggaaatgacaacagcggcctgagaggggaactctggtactttcagatgtcaatcacctcttcgtcacgtttcttaagttcccatttctcaagtctttttgtagctataaataccagattctatctacataggttttctggatttcttttctattttgttcctgttagaatcaaatgtttgtgtgaaagtgaaactacnatgactgctgttagaaatgcaccaatatggtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="87507" stop="90789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87807" g_stop="87831" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87832" i_stop="87911" i_length="80">
            <donor d_prob="0.913" d_score="0.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87912" g_stop="88102" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="216" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88103" i_stop="88605" i_length="503">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88606" g_stop="88825" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="436" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88826" i_stop="89117" i_length="292">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89118" g_stop="89285" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="604" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89286" i_stop="89949" i_length="664">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89950" g_stop="90489" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="1144" r_length="540" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-U324443" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1144</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87807" e_stop="87831"/>
          <exon e_start="87912" e_stop="88102"/>
          <exon e_start="88606" e_stop="88825"/>
          <exon e_start="89118" e_stop="89285"/>
          <exon e_start="89950" e_stop="90489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTCCTGGCATTCAAGAATGGTAAGTATAGTAGCCTTCTAAGGTAATTACAGTAAGTGTGGAGTAGATTGGATTCAGACTATATTTGATTTTCCTTGTAGATATTCAATTTTGGAATAAAAACAAGTCCATGGAAGGGCTATCTGCAAAATCAGTGGTCGTGAACTTTTTCTGCCAGTTTATTGTCTTCCTGTATTTGCTTGATAATGATACTTCATGGATGATACTTGCAAGTTCTGGTGTTGGTTGTTGCATTGAGTTCTGGAAAATAGGGAAGGCCATGCACATTGAGGTATGATCACTAATAATGGAGTCAAGTTTTTGTTTAGCTCTTTTATTACCAGTGGTTGTAATAATATCATCATGTTTTCATACTGGTGTTTGATTGTCGGTTCTCTCCATTATTTACTGTTACAATGGCTGGAAGTTTGAGTCAAGGTTGAATGGATATCTCTATTTTTTTCTCAATCATCCAAATTAATTCATTGTTTACACTTAGATTCTTCTTTATTGACAAGTGTTCAGGAGACACACACACACACTCTTACAAAGTTTCATGTGCTCTTATCTTACATAATTGCTCCTAGTGGGGTTCCCATAATCTTTACTTTGATGAACTTGGAAATTTGAGTTGCTTGGGGATAGAATTCTAGATGGGACTTGTGATTAATAATTGAGAATTCAAACTTATCAATATCTTATTCAGAACAAATGCTTCTCTTTGACATACAGTTACTGATTAAGCGCAAACTCTAATCACCAGTAGTTTTATTGATAATTGTCCTTGATTTCTAGATTGACAGATCTGGTAGAATACCCATGTTGAGGTTCCGAGATCGGGAATCATATGCTGGAAATAAGACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCACAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGTTTATATGTTTGGTAAGTTTCTGTCTGTCTTTTCTTATAATTGCTCTCCATTTTTCTGGACTCTCTATCTTCTGGTATCTAGGATCTAGTAACGTAGTTTTGAGCCTCGCGATGCTCTAACAGTTGATGATCTTGCAGCTGATATTACAATTTCATTGAATAGATACGTTGAGATGTAGTGCACAGTTTGCACTTTCGATAAGCTTGTATCTTAAAACCATTTTAAGCAGGGACTTCTAATACCATATTCTCCTGTCACTTTGCTTTTTCTTAATCTAATTATTTTCAATTACTACTGCTGCAGGTTTTGTTATGATGTGTCCACAGTTGTTCATCAATTATAAACTGAAGTCTGTTGCTCATTTACCTTGGAGGCAAATGACCTACAAATTTCTTAATACCATCATTGATGATTTGTTTGCATTTGTGATAAAAATGCCAATGCTTCATCGCCTGTCTGTGTTCCGTGATGGTAAGTTTTTGAAGTAAATTCCTTTGTAGTCCATTGATTGTTTTTATTGGGTTAAGCAGCGGCGTCGTTCTCTTCTGTGACCAAGCTAGTATTTCCTGTTCAATGCTGTACATGAATTCATATTTGTATCATAAACTCAAAGCCTGAGAACGTTGTACACTCTCTTTAGATAGATTCATTGACCATCTCAAGATCTTGAAAATGTCTTTGTTAACCAAGTAACCAGCTAGATAAGAACATCCATGGGTAATGATCCATGCTAGTATTTTTTTAAGATGTCAAGTATGTGTTTTCAATGTTAGAGAATTCAATATTTGTTACTATTCACATCTTTGCAGATGCTCGAGCTCTCTAACCATTATAAAAGATGAACTTGGTTCTTTAATTGCTACAGCTCATATGCTGGATTTACGTTAAAGTTTGCCATTTATAGGTACTGATAATTATTGTGTTAAAGAAAGGAGTGGTAAATAAACAGTCTCTGGATGCTACTGTTCCTTTTAAGCTTTTACATCAGTTTAGATGATGTTGAGCCAGTAATTTTTGTGGCCGTCTTGTTTTAAAAGTCTATCATTACAAATGTTCTATGTGTTTCTTTTGCTCTATTCTGTGCATTAGCTTTCACTCGATTGGATTACTGATATCATCTGCCTTTGCCATGCAGATCTTATATTTTTGATATACCTATATCAGAGATGGGTTTATCCAGTAGATAAGAAACGGGTGAATGAGTTTGGTTTTGCTGCGGAAGATGTGGATCAAGCTGCCAGTAGTTCAGATACTCCCGCACTTAAAGAAGACGAGAAGAAAACTAACTAATCTAAATCTCTCACTTAGGCTTCAGTACAACATACTTCTTGTTTTGGATGAACTCAACACCTGCAACGATGATGAGTTGCTTCAGGACGTTTAGTAATTTCTCAGGATCTTTGGTTACAATATTCAGATTCGAGTAACTTAATCGAGAATTGGAAATGACAACAGCGGCCTGAGAGGGGAACTCTGGTACTTTCAGATGTCAATCACCTCTTCGTCACGTTTCTTAAGTTCCCATTTCTCAAGTCTTTTTGTAGCTATAAATACCAGATTCTATCTACATAGGTTTTCTGGATTTCTTTTCTATTTTGTTCCTGTTAGAATCAAATGTTTGTGTGATAGTGAAACTACAATGACTGCTGTTAGAAATGCACCAATATGGTTTCTT</genome_strand>
        <mrna_strand>TTTGATTTCCTGGCATTCAAGAATG................................................................................ATATTCAATTTTGGAATAAAAACAAGTCCATGGAAGGGCTATCTGCAAAATCAGTGGTCGTGAACTTTTTCTGCCAGTTTATTGTCTTCCTGTATTTGCTTGATAATGATACTTCATGGATGATACTTGCAAGTTCTGGTGTTGGTTGTTGCATTGAGTTCTGGAAAATAGGGAAGGCCATGCACATTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAGATCTGGTAGAATACCCATGTTGAGGTTCCGAGATCGGGAATCATATGCTGGAAATAAGACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCACAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGTTTATATGTTTG....................................................................................................................................................................................................................................................................................................GTTTTGTTATGATGTGTCCACAGTTGTTCATCAATTATAAACTGAAGTCTGTTGCTCATTTACCTTGGAGGCAAATGACCTACAAATTTCTTAATACCATCATTGATGATTTGTTTGCATTTGTGATAAAAATGCCAATGCTTCATCGCCTGTCTGTGTTCCGTGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTATATTTTTGATATACCTATATCAGAGATGGGTTTATCCAGTAGATAAGAAACGGGTGAATGAGTTTGGTTTTGCTGCGGAAGATGTGGATCAAGCTGCCAGTAGTTCAGATACTCCCGCACTTAAAGAAGACGAGAAGAAAACTAACTAATCTAAATCTCTCACTTAGGCTTCAGTACAACATACTTCTTGTTTTGGATGAACTCAACACCTGCAACGATGATGAGTTGCTTCAGGACGTTTAGTAATTTCTCAGGATCTTTGGTTACAATATTCAGATTCGAGTAACTTAATCGAGAATTGGAAATGACAACAGCGGCCTGAGAGGGGAACTCTGGTACTTTCAGATGTCAATCACCTCTTCGTCACGTTTCTTAAGTTCCCATTTCTCAAGTCTTTTTGTAGCTATAAATACCAGATTCTATCTACATAGGTTTTCTGGATTTCTTTTCTATTTTGTTCCTGTTAGAATCAAATGTTTGTGTGAAAGTGAAACTACNATGACTGCTGTTAGAAATGCACCAATATGGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341012" ref_strand="+" ref_description="SGN-U341012        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: unnamed(evalue: 6e-08, score=23.5)">
      <seq>cacccccacccccaccccctctgtatttgtggtatatagtttacatacatacataaacggtgacattgtctacttgtttcttgagaaagttctttttttttccatcctctcttgttgtatctatggctgcactgaatcctaatgcagaagagtttaaaccaactaataatgaaaaagaagtagtcccttttaatccacaaggcaatgaacttgttgtatatcagccaccattactgccatttcatgtttcacagcctcaatgtcatcacttgggttatttctactactatcaacaaaatgttcccttttattggattcacgatgatctttatcatcaacttgaaaatacacctcaaactcagtcatttcttgcaaaaggtgagatctttagtgatggggtgaaggagaagtgggtgtgggttgagaaaactcatcaagatcagtcttttgttgataaagatgaaatctttagtgatgggatgaacaaaaattggaaaaacaagaaaccctttttgccacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="93320" stop="94440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93620" g_stop="94140" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-U341012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93620" e_stop="94140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCCCACCCCCACCCCCTCTGTATTTGTGGTATATAGTTTACATACATACATAAACGGTGACATTGTCTACTTGTTTCTTGAGAAAGTTCTTTTTTTTTCCATCCTCTCTTGTTGTATCTATGGCTGCACTGAATCCTAATGCAGAAGAGTTTAAACCAACTAATAATGAAAAAGAAGTAGTCCCTTTTAATCCACAAGGCAATGAACTTGTTGTATATCAGCCACCATTACTGCCATTTCATGTTTCACAGCCTCAATGTCATCACTTGGGTTATTTCTACTACTATCAACAAAATGTTCCCTTTTATTGGATTCACGATGATCTTTATCATCAACTTGAAAATACACCTCAAACTCAGTCATTTCTTGCAAAAGGTGAGATCTTTAGTGATGGGGTGAAGGAGAAGTGGGTGTGGGTTGAGAAAACTCATCAAGATCAGTCTTTTGTTGATAAAGATGAAATCTTTAGTGATGGGATGAACAAAAATTGGAAAAACAAGAAACCCTTTTTGCCACCT</genome_strand>
        <mrna_strand>CACCCCCACCCCCACCCCCTCTGTATTTGTGGTATATAGTTTACATACATACATAAACGGTGACATTGTCTACTTGTTTCTTGAGAAAGTTCTTTTTTTTTCCATCCTCTCTTGTTGTATCTATGGCTGCACTGAATCCTAATGCAGAAGAGTTTAAACCAACTAATAATGAAAAAGAAGTAGTCCCTTTTAATCCACAAGGCAATGAACTTGTTGTATATCAGCCACCATTACTGCCATTTCATGTTTCACAGCCTCAATGTCATCACTTGGGTTATTTCTACTACTATCAACAAAATGTTCCCTTTTATTGGATTCACGATGATCTTTATCATCAACTTGAAAATACACCTCAAACTCAGTCATTTCTTGCAAAAGGTGAGATCTTTAGTGATGGGGTGAAGGAGAAGTGGGTGTGGGTTGAGAAAACTCATCAAGATCAGTCTTTTGTTGATAAAGATGAAATCTTTAGTGATGGGATGAACAAAAATTGGAAAAACAAGAAACCCTTTTTGCCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11011" PGL_stop="4216"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11011" e_stop="10727"/>
            <exon e_start="8659" e_stop="8469"/>
            <exon e_start="7769" e_stop="7563"/>
            <exon e_start="7474" e_stop="7357"/>
            <exon e_start="6795" e_stop="6719"/>
            <exon e_start="6237" e_stop="6058"/>
            <exon e_start="5916" e_stop="5872"/>
            <exon e_start="5647" e_stop="5543"/>
            <exon e_start="4694" e_stop="4581"/>
            <exon e_start="4503" e_stop="4216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="0.993"/>
          <exon-intron don_prob="0.863" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.807" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="11011" e_stop="10727" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8659" e_stop="8469" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.863" acc_prob="0.989">
            <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7769" e_stop="7563" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7474" e_stop="7357" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.953">
            <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6795" e_stop="6719" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.945" acc_prob="0.943">
            <gDNA_intron_boundary i_start="6718" i_stop="6238" i_length="481"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6237" e_stop="6058" e_length="180"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.871">
            <gDNA_intron_boundary i_start="6057" i_stop="5917" i_length="141"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5916" e_stop="5872" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.807">
            <gDNA_intron_boundary i_start="5871" i_stop="5648" i_length="224"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="5647" e_stop="5543" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.981">
            <gDNA_intron_boundary i_start="5542" i_stop="4695" i_length="848"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4694" e_stop="4581" e_length="114"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4580" i_stop="4504" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="0.993">
            <gDNA_exon_boundary e_start="4503" e_stop="4216" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11011" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7563"/>
              <exon start="7474" stop="7357"/>
              <exon start="6795" stop="6719"/>
              <exon start="6237" stop="6058"/>
              <exon start="5916" stop="5872"/>
              <exon start="5647" stop="5543"/>
              <exon start="4694" stop="4581"/>
              <exon start="4503" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTATTGACTCTTGATAGAGTTTCAATAACCGGCGCCACTCACTAGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG : AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG : AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG : ATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTG : GTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAG : GATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA : TTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAG : TATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAG : GTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCACTTACAGACGAGGAAATAAACGATCTGCAG : TGGAAAGTGAGAGAACAGGTGGAGAACAAGTTAAAGGTTGTCCTAAGATGAGCTATTTTCATTTGTTTGTTTTTTTCTGATTTTGTAGTTTACAACATGTAGTTTTTACCTGAATTTTGTTTTACATTTATATGTCACTTTTTTTTGCACCATCTTGATTGTAATAATAGAATATGCTTATTTGCTGTCATTTGGAGTTTTGAGGCCAATATGTTGAGGCAATAGATGAAGGTTGATTGTATTGGAATAATTAGTATCAAAAGTGAAACCATTCTATTTTGGTTCTTC</gDNA_template>
            <first_frame> S  I  D  S  *  *  S  F  N  N  R  R  H  S  L  E  R  L  S  K  F  A  M  A  L  S  L  A  K  S  T  F  F  S  N  P  T  S  Y  F  P  K  N  G  I  R  S  F  G  F  L  V  P  F  S  S  S  F  L  L  L  L  R  F  L  Q  *  M  E  S  M  V  T  R  R  G  N  H  Q  *  *  P  L  L  S  I  L  V  E  S  R  F  Q  K  M  :  K  *  *  G  M  T  P  Q  T  I  F  Q  I  Q  Y  L  Q  S  L  E  C  S  F  I  G  G  T  N  I  H  L  V  S  L  R  M  R  S  M  I  I  L  T  Q  T  I  Q  I  S  L  T  S  L  M  I  C  A  Q  *  F  L  L  D  R :   T  L  M  K  F  W  Y  L  L  I  T  L  A  G  V  T  M  T  H  I  M  W  I  L  K  L  S  *  G  A  T  Q  V  H  I  K  L  S  Y  *  G  M  D  T  P  I  F  L  L  L  A  M  C  T  V  E  I  P  L  T  Q  L  T  I  L  Y  S  I  R :   W  R  V  Y  G  S  L  L  Q  M  I  G  R  V  Q  V  L  M  Q  R  H  M  L  R  K  I  L  R  N  V  L  R  V  W  H  D  I  Y  L  :  V  G  W  K  C  A  G  L  T  L  T  S  P  L  L  I  H  H  L  N  W  R  Y  I  F  R :   I  N  G  W  K  F  W  V  V  E  *  Q  N  K  K  Y  *  K  E  A  V  K  Q  T  M  L  L  G  H  L  G  L  D  W  S  A  W  L  W  F  Y  L  I  F  Q  I  F  D  C  S  G  Q  L  M  S  G  S  L  L  N :   F  L  A  A  G  S  G  *  S  L  S  H  F  P  S :   I  H  L  V  I  K  I  *  V  S  G  S  V  I  H  L  P  R  T  I  S  V  K  L  L  E  E  L  L  E  T  L  P  R  R :   *  N  *  *  T  T  S  P  I  R  K  E  *  Q  V  I  A  I  G  *  L  I  G  P  W  N  V  H  L  Q  T  R  K  *  T  I  C  S :   G  K  *  E  N  R  W  R  T  S  *  R  L  S  *  D  E  L  F  S  F  V  C  F  F  L  I  L  *  F  T  T  C  S  F  Y  L  N  F  V  L  H  L  Y  V  T  F  F  C  T  I  L  I  V  I  I  E  Y  A  Y  L  L  S  F  G  V  L  R  P  I  C  *  G  N  R  *  R  L  I  V  L  E  *  L  V  S  K  V  K  P  F  Y  F  G  S   </first_frame>
            <second_frame>  L  L  T  L  D  R  V  S  I  T  G  A  T  H  *  R  G  *  A  N  L  Q  W  L  F  H  *  L  N  P  L  S  S  L  I  P  L  H  I  S  P  R  M  A  F  E  A  L  D  F  L  F  L  S  P  P  L  F  Y  F  F  S  V  S  C  S  R  W  S  P  W  S  Q  E  E  A  I  I  S  S  S  L  C  S  R  S  W  W  S  Q  D  F  K  R  * :   N  S  K  G  *  P  H  K  Q  Y  S  R  Y  N  I  C  K  A  W  N  A  A  S  *  E  E  P  T  S  T  W  Y  P  *  E  C  D  L  *  L  F  *  H  K  L  S  R  *  V  *  Q  V  *  *  F  V  P  N  S  F  C  *  T   : E  L  *  *  S  F  G  T  C  *  S  H  *  Q  E  L  Q  *  H  I  L  C  G  F  S  N  C  P  K  V  P  H  K  C  T  S  S  *  A  T  E  E  W  T  H  P  F  S  C  Y  W  R  C  V  P  *  R  F  H  *  L  N  S  L  S  C  I  P  S   : D  G  G  C  T  G  L  C  S  K  *  L  G  G  F  R  Y  *  C  N  V  T  C  C  G  R  S  *  E  M  S  *  G  F  G  T  T  S  I  W :   W  G  G  N  A  L  G  *  H  L  L  P  L  Y  *  S  I  I  *  T  G  D  I  F  S   : G  S  M  D  G  S  F  G  L  W  S  D  R  T  R  N  I  E  K  K  R  *  N  R  Q  C  C  L  G  I  W  A  W  I  G  A  L  G  Y  G  F  I  *  Y  S  R  Y  S  T  V  L  V  N  *  *  A  V  H  F  S   : I  F  *  R  P  A  R  V  E  V  *  A  I  F  Q   : V  S  T  L  L  *  R  Y  E  F  L  D  Q  *  F  I  Y  R  E  Q  S  L  *  S  C  *  R  N  C  W  R  P  C  R  G   : G  E  T  D  R  Q  L  H  Q  *  E  R  N  D  K  S  L  L  S  D  S  L  S  V  H  G  T  F  T  Y  R  R  G  N  K  R  S  A   : V  E  S  E  R  T  G  G  E  Q  V  K  G  C  P  K  M  S  Y  F  H  L  F  V  F  F  *  F  C  S  L  Q  H  V  V  F  T  *  I  L  F  Y  I  Y  M  S  L  F  F  A  P  S  *  L  *  *  *  N  M  L  I  C  C  H  L  E  F  *  G  Q  Y  V  E  A  I  D  E  G  *  L  Y  W  N  N  *  Y  Q  K  *  N  H  S  I  L  V  L  </second_frame>
            <third_frame>   Y  *  L  L  I  E  F  Q  *  P  A  P  L  T  R  E  A  E  Q  I  C  N  G  S  F  I  S  *  I  H  F  L  L  *  S  H  F  I  F  P  Q  E  W  H  S  K  L  W  I  S  C  S  F  L  L  L  F  S  T  S  S  P  F  P  A  V  D  G  V  H  G  H  K  K  R  Q  S  S  V  V  A  S  A  L  D  L  G  G  V  K  I  S  K  D   : E  I  V  R  D  D  P  T  N  N  I  P  D  T  I  F  A  K  L  G  M  Q  L  H  R  R  N  Q  H  P  L  G  I  L  K  N  A  I  Y  D  Y  F  D  T  N  Y  P  D  K  F  D  K  F  D  D  L  C  P  I  V  S  V  R  Q  :  N  F  D  E  V  L  V  P  A  D  H  I  S  R  S  Y  N  D  T  Y  Y  V  D  S  Q  T  V  L  R  C  H  T  S  A  H  Q  A  E  L  L  R  N  G  H  T  H  F  L  V  T  G  D  V  Y  R  R  D  S  I  D  S  T  H  Y  P  V  F  H  Q  :  M  E  G  V  R  V  F  A  P  N  D  W  E  G  S  G  T  D  A  T  S  H  A  A  E  D  L  K  K  C  L  E  G  L  A  R  H  L  F   : G  G  V  E  M  R  W  V  D  T  Y  F  P  F  T  N  P  S  F  E  L  E  I  Y  F  Q  :  D  Q  W  M  E  V  L  G  C  G  V  T  E  Q  E  I  L  K  R  S  G  K  T  D  N  V  A  W  A  F  G  L  G  L  E  R  L  A  M  V  L  F  D  I  P  D  I  R  L  F  W  S  T  D  E  R  F  T  S  Q  :  F  S  S  G  R  L  G  L  K  F  K  P  F  S  K  :  Y  P  P  C  Y  K  D  M  S  F  W  I  S  D  S  F  T  E  N  N  L  C  E  V  V  R  G  I  A  G  D  L  A  E  E  :  V  K  L  I  D  N  F  T  N  K  K  G  M  T  S  H  C  Y  R  I  A  Y  R  S  M  E  R  S  L  T  D  E  E  I  N  D  L  Q  :  W  K  V  R  E  Q  V  E  N  K  L  K  V  V  L  R  *  A  I  F  I  C  L  F  F  S  D  F  V  V  Y  N  M  *  F  L  P  E  F  C  F  T  F  I  C  H  F  F  L  H  H  L  D  C  N  N  R  I  C  L  F  A  V  I  W  S  F  E  A  N  M  L  R  Q  *  M  K  V  D  C  I  G  I  I  S  I  K  S  E  T  I  L  F  W  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10907" stop="10727"/>
                    <exon start="8659" stop="8469"/>
                    <exon start="7769" stop="7563"/>
                    <exon start="7474" stop="7357"/>
                    <exon start="6795" stop="6719"/>
                    <exon start="6237" stop="6058"/>
                    <exon start="5916" stop="5872"/>
                    <exon start="5647" stop="5543"/>
                    <exon start="4694" stop="4581"/>
                    <exon start="4503" stop="4453"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHFIFPQEWHSKLWISCSFLLLFSTSSPFPAVDGVHGHKKRQSSVVASALDLGGVKISKDEIVRDDPTNNIPDTIFAKLGMQLHRRNQHPLGILKNAIYDYFDTNYPDKFDKFDDLCPIVSVRQNFDEVLVPADHISRSYNDTYYVDSQTVLRCHTSAHQAELLRNGHTHFLVTGDVYRRDSIDSTHYPVFHQMEGVRVFAPNDWEGSGTDATSHAAEDLKKCLEGLARHLFGGVEMRWVDTYFPFTNPSFELEIYFQDQWMEVLGCGVTEQEILKRSGKTDNVAWAFGLGLERLAMVLFDIPDIRLFWSTDERFTSQFSSGRLGLKFKPFSKYPPCYKDMSFWISDSFTENNLCEVVRGIAGDLAEEVKLIDNFTNKKGMTSHCYRIAYRSMERSLTDEEINDLQWKVREQVENKLKVVLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10789" e_stop="10727"/>
            <exon e_start="8659" e_stop="8113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10789" e_stop="10727" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="8659" e_stop="8113" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10789" stop="10727"/>
              <exon start="8659" stop="8113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG : AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGA</gDNA_template>
            <first_frame> R  G  N  H  Q  *  *  P  L  L  S  I  L  V  E  S  R  F  Q  K  M  :  K  *  *  G  M  T  P  Q  T  I  F  Q  I  Q  Y  L  Q  S  L  E  C  S  F  I  G  G  T  N  I  H  L  V  S  L  R  M  R  S  M  I  I  L  T  Q  T  I  Q  I  S  L  T  S  L  M  I  C  A  Q  *  F  L  L  D  R  L  V  Q  E  G  *  G  I  F  F  F  C  T  L  H  D  F  V  F  C  N  Y  I  C  F  L  C  S  N  Y  V  P  F  S  I  D  Q  A  Y  F  F  I  H  N  F  I  *  L  A  L  T  S  V  *  F  A  V  K  L  G  S  *  Q  T  I  H  F  G  L  F  M  G  F  L  I  F  C  *  V  M  N  Y  T  L  L  L  L  K  T  L  F  Y  *  L  *  G  Q  Q  Y  Y  S  P  S  I  M  S  Q  A  C  Q  P  F  S  H  *  P  I  Q  </first_frame>
            <second_frame>  E  A  I  I  S  S  S  L  C  S  R  S  W  W  S  Q  D  F  K  R  * :   N  S  K  G  *  P  H  K  Q  Y  S  R  Y  N  I  C  K  A  W  N  A  A  S  *  E  E  P  T  S  T  W  Y  P  *  E  C  D  L  *  L  F  *  H  K  L  S  R  *  V  *  Q  V  *  *  F  V  P  N  S  F  C  *  T  G  W  S  K  K  V  K  E  S  F  F  F  A  L  F  M  I  L  F  F  V  I  I  F  A  F  C  V  R  I  M  F  L  S  P  L  I  K  H  I  S  L  F  I  I  S  Y  S  W  H  *  H  L  F  N  L  Q  *  S  *  G  P  N  K  P  F  I  L  A  F  S  W  G  S  S  Y  S  V  E  *  *  I  I  L  F  Y  S  *  K  P  Y  S  I  S  S  K  V  N  N  I  I  P  H  Q  L  *  V  R  H  V  N  H  S  A  T  N  L  Y  R </second_frame>
            <third_frame>   R  Q  S  S  V  V  A  S  A  L  D  L  G  G  V  K  I  S  K  D   : E  I  V  R  D  D  P  T  N  N  I  P  D  T  I  F  A  K  L  G  M  Q  L  H  R  R  N  Q  H  P  L  G  I  L  K  N  A  I  Y  D  Y  F  D  T  N  Y  P  D  K  F  D  K  F  D  D  L  C  P  I  V  S  V  R  Q  V  G  P  R  R  L  R  N  L  F  F  L  H  S  S  *  F  C  F  L  *  L  Y  L  L  S  V  F  E  L  C  S  F  L  H  *  S  S  I  F  L  Y  S  *  F  H  I  A  G  I  N  I  C  L  I  C  S  E  V  R  V  L  T  N  H  S  F  W  P  F  H  G  V  P  H  I  L  L  S  N  E  L  Y  S  S  T  P  E  N  L  I  L  L  A  L  R  S  T  I  L  F  P  I  N  Y  E  S  G  M  S  T  I  Q  P  L  T  Y  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10787" stop="10727"/>
                    <exon start="8659" stop="8421"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQSSVVASALDLGGVKISKDEIVRDDPTNNIPDTIFAKLGMQLHRRNQHPLGILKNAIYDYFDTNYPDKFDKFDDLCPIVSVRQVGPRRLRNLFFLHSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8336" stop="8115"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHIAGINICLICSEVRVLTNHSFWPFHGVPHILLSNELYSSTPENLILLALRSTILFPINYESGMSTIQPLTYT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="12311" PGL_stop="19553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12311" e_stop="12686"/>
            <exon e_start="13831" e_stop="14042"/>
            <exon e_start="15665" e_stop="15946"/>
            <exon e_start="16484" e_stop="16606"/>
            <exon e_start="17594" e_stop="17744"/>
            <exon e_start="17869" e_stop="18098"/>
            <exon e_start="19071" e_stop="19107"/>
            <exon e_start="19211" e_stop="19553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12311" e_stop="12686" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13831" e_stop="14042" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.981">
            <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15665" e_stop="15946" e_length="282"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16484" e_stop="16606" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17594" e_stop="17744" e_length="151"/>
          </exon>
          <intron i_serial="5" don_prob="0.894" acc_prob="0.993">
            <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17869" e_stop="18098" e_length="230"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="18099" i_stop="19070" i_length="972"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19071" e_stop="19107" e_length="37"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="19211" e_stop="19553" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12311" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17744"/>
              <exon start="17869" stop="18098"/>
              <exon start="19071" stop="19107"/>
              <exon start="19211" stop="19553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG : GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG : GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT : GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG : GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAG : GTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCT : GCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAG : CTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAATAT</gDNA_template>
            <first_frame> L  *  L  T  M  N  S  A  S  I  S  S  I  E  F  R  T  F  S  N  L  P  S  R  R  T  A  Y  L  T  H  R  R  V  A  E  T  L  H  Q  S  A  S  S  L  P  E  R  V  G  S  S  S  S  K  A  G  R  K  S  F  I  R  Y  T  V  S  A  S  Y  G  D  K  E  S  G  S  V  N  S  N  E  F  T  S  P  A  K  A  L  R  K  L  L  E  S  P  G  V  H  Q  G  P  A  C  F  D  A  L  S  A  K  L  V  E  R  A  G  F  D  F  C  F  T  T   : G  F  G  I  S  A  A  R  L  G  L  P  D  A  G  L  I  S  Y  G  E  M  V  A  Q  G  L  E  I  T  Q  A  V  S  I  P  V  I  G  D  G  D  N  G  Y  G  N  A  M  N  V  K  R  T  V  K  G  Y  I  R  A  G  F  G  G  I  I  L  E  D  Q  :  V  S  P  K  A  C  G  H  T  R  G  R  K  V  V  S  R  E  E  A  I  M  R  I  K  A  A  V  D  A  R  K  E  S  G  S  D  I  V  I  V  A  R  T  D  A  R  Q  A  V  S  F  E  E  A  I  W  R  A  R  A  L  A  D  A  G  A  D  V  L  F  I  D  A  L  A  S  K  E  E  M  K  A  F  C  D  V  Y  P  L  V  P  K  L  :  A  N  M  L  E  G  G  G  K  T  P  I  F  T  P  I  E  L  E  E  L  G  Y  K  L  V  A  Y  P  L  S  L  I  G  V  S  I  G  A  M  Q  :  D  A  L  S  A  I  K  G  G  R  I  P  S  P  G  S  M  P  S  F  E  E  L  K  E  I  L  G  F  N  T  Y  Y  E  E  E  K  R  Y  A  T  T  S  S  Q  L  P  S  R  K   : G  D  F  S  S  N  S  N  E  Y  G  V  Q  P  G  I  Q  A  D  R  V  Q  R  T  Q  I  P  E  N  P  V  E  V  L  I  P  E  V  Y  D  R  F  S  G  E  G  K  K  G  N  F  S  M  A  W  S  R  K  L  R  V  K  I  T  G  K  D  G  F  E  K  L  D  I  R  I  P  :  A  G  F  L  E  G  I  T  N  I  V  P   : A  L  V  G  V  N  I  K  S  L  L  D  E  A  T  L  E  E  G  G  K  Q  L  L  D  F  Q  D  T  M  G  D  R  I  Q  V  I  L  E  *  R  R  S  C  F  L  F  L  Y  F  D  E  *  I  L  Y  G  K  *  C  T  I  P  S  L  A  W  P  L  R  F  G  L  N  G  R  A  *  C  I  *  N  N  V  W  V  K  R  M  L  Q  K  S  M  V  L  F  S  A  C  N  P  L  K  Y  *  S  I  I  *  F  S  *  N   </first_frame>
            <second_frame>  C  D  *  Q  *  I  P  H  Q  F  P  A  *  S  S  E  L  S  R  I  F  R  H  A  E  L  H  T  *  L  T  G  A  *  P  R  R  S  I  K  V  L  L  H  C  R  K  E  *  V  A  A  V  A  K  L  E  G  N  H  L  F  A  T  L  S  L  L  A  M  V  I  R  N  R  V  Q  L  T  L  M  S  L  L  L  Q  R  R  H  S  G  N  Y  *  N  R  R  E  F  I  K  D  Q  L  V  S  M  L  S  V  L  S  L  L  N  E  L  G  S  I  S  A  L  Q  L  :  V  L  E  Y  L  L  H  G  *  D  C  Q  M  Q  D  *  F  L  T  E  R  W  W  L  K  V  *  R  S  H  K  Q  C  P  Y  Q  *  L  G  M  E  I  M  D  M  A  T  P  *  M  S  R  E  L  *  K  D  I  L  E  Q  V  S  G  E  *  S  L  K  I  R :   F  L  P  K  H  V  V  T  H  V  A  G  K  L  F  L  G  R  K  Q  S  *  E  *  K  R  L  L  M  L  E  K  K  V  D  L  T  S  *  L  W  H  V  L  M  H  V  K  Q  S  P  L  K  K  P  F  G  G  H  V  L  L  L  M  L  E  L  M  F  C  S  *  M  L  L  L  P  K  K  R  *  K  L  S  V  M  S  I  H  W  F  R  S  L :   Q  I  C  L  K  V  V  V  K  H  Q  Y  S  L  Q  L  N  L  R  N  L  D  T  N  W  W  H  I  H  F  P  *  L  G  Y  Q  S  V  Q  C  R :   M  H  C  L  P  L  K  E  V  G  Y  H  R  R  V  A  C  L  H  L  K  S  *  K  R  S  *  V  S  I  P  T  M  K  K  R  S  V  M  Q  Q  Q  A  V  N  F  L  L  V  K  :  V  I  S  H  Q  T  A  M  S  M  V  F  N  P  A  S  K  L  I  E  C  R  G  L  K  Y  P  R  I  L  L  R  Y  *  Y  L  R  C  M  T  D  F  L  V  R  V  R  K  E  I  S  Q  W  P  G  L  G  N  *  E  S  R  L  L  E  K  M  D  L  K  N  *  I  S  E  F  L :   L  D  F  W  K  E  S  Q  T  *  F  Q  :  L  W  *  V  *  T  S  S  L  C  W  M  R  Q  L  *  K  R  V  G  N  N  C  W  I  F  R  I  Q  W  V  T  G  Y  K  L  F  W  S  K  G  D  L  A  S  Y  S  C  I  L  M  N  E  Y  Y  M  A  N  D  V  Q  S  L  A  *  L  G  P  S  D  L  V  *  M  E  E  H  N  A  Y  E  I  M  C  G  L  S  A  C  Y  K  R  V  W  Y  C  F  L  H  V  I  P  *  N  I  D  Q  *  Y  N  L  V  K  I  </second_frame>
            <third_frame>   V  I  D  N  E  F  R  I  N  F  Q  H  R  V  Q  N  F  L  E  S  S  V  T  P  N  C  I  L  N  S  P  A  R  S  R  D  A  P  S  K  C  F  F  I  A  G  K  S  R  *  Q  Q  *  Q  S  W  K  E  I  I  Y  S  L  H  C  L  C  *  L  W  *  *  G  I  G  F  S  *  L  *  *  V  Y  F  S  S  E  G  T  P  E  T  I  R  I  A  G  S  S  S  R  T  S  L  F  R  C  S  Q  C  *  A  C  *  T  S  W  V  R  F  L  L  Y  N  W :   F  W  N  I  C  C  T  V  R  T  A  R  C  R  T  N  F  L  R  R  D  G  G  S  R  S  R  D  H  T  S  S  V  H  T  S  N  W  G  W  R  *  W  I  W  Q  R  H  E  C  Q  E  N  C  E  R  I  Y  *  S  R  F  R  G  N  N  P  *  R  S   : G  F  S  Q  S  M  W  S  H  T  W  Q  E  S  C  F  S  G  G  S  N  H  E  N  K  S  G  C  *  C  S  K  R  K  W  I  *  H  R  D  C  G  T  Y  *  C  T  S  S  S  L  L  *  R  S  H  L  A  G  T  C  S  C  *  C  W  S  *  C  S  V  H  R  C  S  C  F  Q  R  R  D  E  S  F  L  *  C  L  S  T  G  S  E  A   : C  K  Y  A  *  R  W  W  *  N  T  N  I  H  S  N  *  T  *  G  T  W  I  Q  T  G  G  I  S  T  F  L  D  W  G  I  N  R  C  N  A   : G  C  I  V  C  H  *  R  R  S  D  T  I  A  G  *  H  A  F  I  *  R  A  K  R  D  P  R  F  Q  Y  L  L  *  R  R  E  A  L  C  N  N  K  Q  S  T  S  F  S  *  R :   *  F  L  I  K  Q  Q  *  V  W  C  S  T  R  H  P  S  *  *  S  A  E  D  S  N  T  R  E  S  C  *  G  I  D  T  *  G  V  *  Q  I  F  W  *  G  *  E  R  K  F  L  N  G  L  V  S  E  I  E  S  Q  D  Y  W  K  R  W  I  *  K  T  R  Y  Q  N  S   : C  W  I  F  G  R  N  H  K  H  S  S  S :   F  G  R  C  K  H  Q  V  S  V  G  *  G  N  F  R  R  G  W  E  T  I  V  G  F  S  G  Y  N  G  *  Q  D  T  S  Y  F  G  V  K  E  I  L  L  L  I  P  V  F  *  *  M  N  I  I  W  Q  M  M  Y  N  P  *  L  S  L  A  P  Q  I  W  S  K  W  K  S  I  M  H  M  K  *  C  V  G  *  A  H  V  T  K  E  Y  G  I  V  F  C  M  *  S  P  K  I  L  I  N  N  I  I  *  L  K  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12317" stop="12686"/>
                    <exon start="13831" stop="14042"/>
                    <exon start="15665" stop="15946"/>
                    <exon start="16484" stop="16606"/>
                    <exon start="17594" stop="17744"/>
                    <exon start="17869" stop="18098"/>
                    <exon start="19071" stop="19107"/>
                    <exon start="19211" stop="19329"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1521</number_coding_nucleotides>
                  <number_encoded_amino_acids>507</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTMNSASISSIEFRTFSNLPSRRTAYLTHRRVAETLHQSASSLPERVGSSSSKAGRKSFIRYTVSASYGDKESGSVNSNEFTSPAKALRKLLESPGVHQGPACFDALSAKLVERAGFDFCFTTGFGISAARLGLPDAGLISYGEMVAQGLEITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIRAGFGGIILEDQVSPKACGHTRGRKVVSREEAIMRIKAAVDARKESGSDIVIVARTDARQAVSFEEAIWRARALADAGADVLFIDALASKEEMKAFCDVYPLVPKLANMLEGGGKTPIFTPIELEELGYKLVAYPLSLIGVSIGAMQDALSAIKGGRIPSPGSMPSFEELKEILGFNTYYEEEKRYATTSSQLPSRKGDFSSNSNEYGVQPGIQADRVQRTQIPENPVEVLIPEVYDRFSGEGKKGNFSMAWSRKLRVKITGKDGFEKLDIRIPAGFLEGITNIVPALVGVNIKSLLDEATLEEGGKQLLDFQDTMGDRIQVILE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20507" PGL_stop="26613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20507" e_stop="20732"/>
            <exon e_start="22344" e_stop="22396"/>
            <exon e_start="24012" e_stop="24180"/>
            <exon e_start="24304" e_stop="24367"/>
            <exon e_start="25107" e_stop="25186"/>
            <exon e_start="25326" e_stop="25479"/>
            <exon e_start="26322" e_stop="26383"/>
            <exon e_start="26551" e_stop="26613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.978"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.744" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="20507" e_stop="20732" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20733" i_stop="22343" i_length="1611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22344" e_stop="22396" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22397" i_stop="24011" i_length="1615"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24012" e_stop="24180" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24181" i_stop="24303" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24304" e_stop="24367" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.964">
            <gDNA_intron_boundary i_start="24368" i_stop="25106" i_length="739"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25107" e_stop="25186" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.979">
            <gDNA_intron_boundary i_start="25187" i_stop="25325" i_length="139"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25326" e_stop="25479" e_length="154"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25480" i_stop="26321" i_length="842"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26322" e_stop="26383" e_length="62"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.744">
            <gDNA_intron_boundary i_start="26384" i_stop="26550" i_length="167"/>
          </intron>
          <exon e_serial="8" e_score="0.984">
            <gDNA_exon_boundary e_start="26551" e_stop="26613" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20507" stop="20732"/>
              <exon start="22344" stop="22396"/>
              <exon start="24012" stop="24180"/>
              <exon start="24304" stop="24367"/>
              <exon start="25107" stop="25186"/>
              <exon start="25326" stop="25479"/>
              <exon start="26322" stop="26383"/>
              <exon start="26551" stop="26613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAGGAAAAAAACCCTTACATAGATAGAGAGCAAACCTAAGCTTGAACTCAGCAGCGAATTTTAAGCGTTCATCGTCAATGGACGCCATAAGGAAGCAACTGGATGTGTTAATGGGAGCTAACCGGAACGGCGATGTGACGGAGGTTGATCGGAAGTACTACGACCGTGAAGTTTGCCGTCTTTATCTCTCCGGTCTCTGCCCTCACGAACTCTTTCAGCTCACT : AAAATGGATATGGGGGCATGCCCTAAGGTGCATTCGTTGCCTCTAAGAAAAGA : ATATGAAGAAGCAAAGGCAAAAGGTCAGGATAACTATGACAGGGACTTGGAGGATTTAATAGACAGGCTGATTGTTGAGTGTGACAGGAAAATAACTAGAGCCCTTAAAAGGCTTGATGAGGAGGATGCCAAAGCTGCTATTGCCATATCAGTATCTGAAGTTACCCTG : ACTCCGGAGATTGATGAGTTGTCAAAGCAAATTAAAGAGAAGCTGAAAGAAGCTGACATACATG : ATCTTGAAGGTAAGACAGATATGAAAATTCGAGCTTTGGAAGAAGTTGAAGAACTTCGAACTAAGAGAGCAGACAAACAG : TCAATGCTTCTTTTGGATGCATTCAACAAGGATCGAGCATCTTTGCCGCAGCCACTTCAGAATGCTCCACAGTTGGCACCCTTGCCTGCATCTACTCCAGATCCTCGCATACAGGAAATGATAAATGAGAAACTGAAGAAAGCAGAAGATCTTG : GTGAACAAGGAATGGTTGATGAAGCTCAGAAAGCATTGGAAGAGGCGGAAGCTCTTAAGAAG : CTACCTGTGAGGCAAGAACCTGTTCAGGATTCCTCAAAGTACACTGCAGTTGATGTGCGGATT</gDNA_template>
            <first_frame> E  R  K  K  T  L  T  *  I  E  S  K  P  K  L  E  L  S  S  E  F  *  A  F  I  V  N  G  R  H  K  E  A  T  G  C  V  N  G  S  *  P  E  R  R  C  D  G  G  *  S  E  V  L  R  P  *  S  L  P  S  L  S  L  R  S  L  P  S  R  T  L  S  A  H   : *  N  G  Y  G  G  M  P  *  G  A  F  V  A  S  K  K  R  :  I  *  R  S  K  G  K  R  S  G  *  L  *  Q  G  L  G  G  F  N  R  Q  A  D  C  *  V  *  Q  E  N  N  *  S  P  *  K  A  *  *  G  G  C  Q  S  C  Y  C  H  I  S  I  *  S  Y  P   : D  S  G  D  *  *  V  V  K  A  N  *  R  E  A  E  R  S  *  H  T  * :   S  *  R  *  D  R  Y  E  N  S  S  F  G  R  S  *  R  T  S  N  *  E  S  R  Q  T   : V  N  A  S  F  G  C  I  Q  Q  G  S  S  I  F  A  A  A  T  S  E  C  S  T  V  G  T  L  A  C  I  Y  S  R  S  S  H  T  G  N  D  K  *  E  T  E  E  S  R  R  S  W :   *  T  R  N  G  *  *  S  S  E  S  I  G  R  G  G  S  S  *  E   : A  T  C  E  A  R  T  C  S  G  F  L  K  V  H  C  S  *  C  A  D  </first_frame>
            <second_frame>  R  G  K  K  P  L  H  R  *  R  A  N  L  S  L  N  S  A  A  N  F  K  R  S  S  S  M  D  A  I  R  K  Q  L  D  V  L  M  G  A  N  R  N  G  D  V  T  E  V  D  R  K  Y  Y  D  R  E  V  C  R  L  Y  L  S  G  L  C  P  H  E  L  F  Q  L  T  :  K  M  D  M  G  A  C  P  K  V  H  S  L  P  L  R  K  E :   Y  E  E  A  K  A  K  G  Q  D  N  Y  D  R  D  L  E  D  L  I  D  R  L  I  V  E  C  D  R  K  I  T  R  A  L  K  R  L  D  E  E  D  A  K  A  A  I  A  I  S  V  S  E  V  T  L  :  T  P  E  I  D  E  L  S  K  Q  I  K  E  K  L  K  E  A  D  I  H   : D  L  E  G  K  T  D  M  K  I  R  A  L  E  E  V  E  E  L  R  T  K  R  A  D  K  Q  :  S  M  L  L  L  D  A  F  N  K  D  R  A  S  L  P  Q  P  L  Q  N  A  P  Q  L  A  P  L  P  A  S  T  P  D  P  R  I  Q  E  M  I  N  E  K  L  K  K  A  E  D  L   : G  E  Q  G  M  V  D  E  A  Q  K  A  L  E  E  A  E  A  L  K  K  :  L  P  V  R  Q  E  P  V  Q  D  S  S  K  Y  T  A  V  D  V  R  I </second_frame>
            <third_frame>   E  E  K  N  P  Y  I  D  R  E  Q  T  *  A  *  T  Q  Q  R  I  L  S  V  H  R  Q  W  T  P  *  G  S  N  W  M  C  *  W  E  L  T  G  T  A  M  *  R  R  L  I  G  S  T  T  T  V  K  F  A  V  F  I  S  P  V  S  A  L  T  N  S  F  S  S  L :   K  W  I  W  G  H  A  L  R  C  I  R  C  L  *  E  K   : N  M  K  K  Q  R  Q  K  V  R  I  T  M  T  G  T  W  R  I  *  *  T  G  *  L  L  S  V  T  G  K  *  L  E  P  L  K  G  L  M  R  R  M  P  K  L  L  L  P  Y  Q  Y  L  K  L  P  * :   L  R  R  L  M  S  C  Q  S  K  L  K  R  S  *  K  K  L  T  Y  M  :  I  L  K  V  R  Q  I  *  K  F  E  L  W  K  K  L  K  N  F  E  L  R  E  Q  T  N  S :   Q  C  F  F  W  M  H  S  T  R  I  E  H  L  C  R  S  H  F  R  M  L  H  S  W  H  P  C  L  H  L  L  Q  I  L  A  Y  R  K  *  *  M  R  N  *  R  K  Q  K  I  L  :  V  N  K  E  W  L  M  K  L  R  K  H  W  K  R  R  K  L  L  R  S :   Y  L  *  G  K  N  L  F  R  I  P  Q  S  T  L  Q  L  M  C  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20535" stop="20732"/>
                    <exon start="22344" stop="22396"/>
                    <exon start="24012" stop="24180"/>
                    <exon start="24304" stop="24367"/>
                    <exon start="25107" stop="25186"/>
                    <exon start="25326" stop="25479"/>
                    <exon start="26322" stop="26383"/>
                    <exon start="26551" stop="26613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RANLSLNSAANFKRSSSMDAIRKQLDVLMGANRNGDVTEVDRKYYDREVCRLYLSGLCPHELFQLTKMDMGACPKVHSLPLRKEYEEAKAKGQDNYDRDLEDLIDRLIVECDRKITRALKRLDEEDAKAAIAISVSEVTLTPEIDELSKQIKEKLKEADIHDLEGKTDMKIRALEEVEELRTKRADKQSMLLLDAFNKDRASLPQPLQNAPQLAPLPASTPDPRIQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPVRQEPVQDSSKYTAVDVRI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="30007" PGL_stop="36220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30007" e_stop="30203"/>
            <exon e_start="32252" e_stop="32305"/>
            <exon e_start="32399" e_stop="32544"/>
            <exon e_start="32621" e_stop="32942"/>
            <exon e_start="33069" e_stop="33140"/>
            <exon e_start="35370" e_stop="35435"/>
            <exon e_start="35519" e_stop="35951"/>
            <exon e_start="36199" e_stop="36220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.105" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.705" e_score="0.968"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30007" e_stop="30203" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32252" e_stop="32305" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.105">
            <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32399" e_stop="32544" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.895" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32621" e_stop="32942" e_length="322"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.879">
            <gDNA_intron_boundary i_start="32943" i_stop="33068" i_length="126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33069" e_stop="33140" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33141" i_stop="35369" i_length="2229"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35370" e_stop="35435" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="0.968">
            <gDNA_exon_boundary e_start="35519" e_stop="35951" e_length="433"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.705">
            <gDNA_intron_boundary i_start="35952" i_stop="36198" i_length="247"/>
          </intron>
          <exon e_serial="8" e_score="0.727">
            <gDNA_exon_boundary e_start="36199" e_stop="36220" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30007" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35951"/>
              <exon start="36199" stop="36220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCCTTGTACCGGCGAGCAAAATGACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAG : GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG : GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA : GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAG : GTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAG : GCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACT : CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTTACTTGACTCAACATAACTTGGAACT : AAGAAGTCATAGAAAAAAAAAA</gDNA_template>
            <first_frame> L  S  L  Y  R  R  A  K  *  R  R  R  S  E  L  R  R  H  R  Q  H  L  L  H  R  R  Y  F  R  P  K  M  P  R  N  P  *  L  C  Y  L  S  A  I  I  A  I  T  I  I  C  V  P  N  Y  L  S  R  P  N  S  D  S  P  V  R :   V  Y  N  L  I  G  I  I  Q  S  *  L  E  P  N  R  M  R :   L  L  L  V  D  L  Q  I  M  Q  L  L  L  S  L  S  Q  K  R  *  N  H  Q  V  R  L  H  L  Q  L  R  Y  Q  R  K  Q  Y  L  T  L  L  A  K  F  Q  A  L  S   : S  *  L  I  L  G  M  L  W  S  C  S  *  N  N  L  I  V  K  F  *  S  V  R  R  R  H  Y  H  N  H  L  L  L  F  L  H  K  L  H  L  Y  N  H  I  M  Y  H  L  Y  N  L  M  H  L  L  H  L  H  L  H  L  H  L  L  Q  F  K  P  L  H  R  L  Q  L  Q  Q  S  Q  L  I  H  L  F  L  R  S  N  P  Q  W  Q  G  H  S  I  E  V  Q  H  P  V  N  Q  H  L  *  R :   S  E  T  K  C  R  R  V  K  F  F  A  L  L  K  R  *  S  *  *  T  K  *  R :   L  I  D  Q  E  P  S  L  R  L  L  L  K  M  E  N  L  S  V  L  I  L :   L  C  L  *  S  S  H  R  T  V  R  V  R  P  G  K  Q  Y  A  E  E  L  G  K  C  L  F  T  L  G  L  *  Y  F  A  V  F  Q  F  Q  *  V  C  L  Q  *  L  V  A  *  W  K  L  E  *  T  I  L  V  K  T  H  *  E  S  L  V  F  N  L  R  Y  S  L  A  F  Y  C  G  I  L  A  Y  S  F  F  P  F  S  V  *  H  I  Y  V  R  F  V  P  R  *  Q  S  H  R  I  M  I  R  I  V  C  S  F  D  Y  L  A  P  G  Q  Y  D  T  Y  N  C  Y  F  M  *  N  S  F  N  L  L  D  S  T  *  L  G  T  :  K  K  S  *  K  K  K  </first_frame>
            <second_frame>  S  P  C  T  G  E  Q  N  D  D  V  V  R  N  Y  G  D  T  G  S  I  C  F  T  G  G  I  S  G  Q  K  C  P  E  I  L  D  F  V  T  F  L  P  S  S  P  L  Q  S  F  A  F  Q  I  I  Y  H  A  Q  T  P  I  L  L  *   : G  S  T  I  *  L  E  S  F  S  R  N  *  S  P  I  E  *   : G  C  S  W  W  I  F  K  *  C  S  Y  S  Y  H  S  V  R  R  G  E  I  T  K  *  D  F  I  C  N  F  G  I  R  G  S  N  I  *  L  Y  *  P  S  F  K  P  C  Q  :  A  S  *  F  *  G  C  C  G  A  A  V  K  T  I  *  L  *  N  S  N  P  *  E  G  G  T  T  T  T  T  C  S  C  S  C  T  S  S  I  Y  T  I  I  S  C  T  I  Y  T  I  *  C  I  S  S  T  C  T  C  T  F  T  C  S  N  S  N  P  C  T  V  S  S  C  S  K  V  S  *  F  I  S  S  S  A  Q  I  P  N  G  R  D  I  L  *  K  S  S  T  R  *  T  S  I  C  E   : G  R  R  Q  S  A  E  G  S  S  S  L  H  Y  *  S  D  E  V  D  E  R  N  R   : G  *  S  I  R  N  H  R  *  G  C  C  *  R  W  K  T  C  Q  C  *  Y   : S  S  V  C  D  Q  A  I  E  P  F  E  *  D  P  G  N  N  M  Q  R  N  L  A  S  V  C  L  P  W  A  Y  D  I  L  Q  Y  F  S  F  S  E  Y  V  C  N  D  W  *  R  D  G  N  W  N  R  R  F  W  L  K  L  I  R  R  V  *  C  L  I  *  G  I  L  W  H  F  I  V  G  F  *  L  T  H  F  F  L  F  Q  F  D  I  F  M  *  G  L  Y  L  D  N  N  L  I  A  L  *  *  G  L  Y  A  V  L  I  I  *  P  L  A  N  T  I  L  I  I  A  I  L  C  E  I  V  S  I  Y  L  T  Q  H  N  L  E  L :   R  S  H  R  K  K  K </second_frame>
            <third_frame>   L  L  V  P  A  S  K  M  T  T  S  F  G  T  T  A  T  P  A  A  S  A  S  P  A  V  F  P  A  K  N  A  P  K  S  L  T  L  L  P  F  C  H  H  R  H  Y  N  H  L  R  S  K  L  S  I  T  P  K  L  R  F  S  C  K  :  G  L  Q  S  N  W  N  H  S  V  V  T  R  A  Q  S  N  E  :  V  A  L  G  G  S  S  N  N  A  A  T  P  I  T  Q  S  E  E  V  K  S  P  S  E  T  S  S  A  T  S  V  S  E  E  A  I  S  N  F  I  S  Q  V  S  S  L  V  K :   L  V  D  S  R  D  V  V  E  L  Q  L  K  Q  F  D  C  E  I  L  I  R  K  K  E  A  L  P  Q  P  P  A  P  V  P  A  Q  A  P  F  I  Q  S  Y  H  V  P  S  I  Q  S  N  A  S  P  P  P  A  P  A  P  S  P  A  P  I  Q  T  P  A  P  S  P  A  A  A  K  S  A  D  S  S  L  P  P  L  K  S  P  M  A  G  T  F  Y  R  S  P  A  P  G  E  P  A  F  V  K  :  V  G  D  K  V  Q  K  G  Q  V  L  C  I  I  E  A  M  K  L  M  N  E  I  E  :  A  D  R  S  G  T  I  V  E  V  V  A  E  D  G  K  P  V  S  V  D  T  :  P  L  F  V  I  K  P  *  N  R  S  S  K  T  R  E  T  I  C  R  G  T  W  Q  V  F  V  Y  L  G  L  M  I  F  C  S  I  S  V  S  V  S  M  F  A  M  T  G  S  V  M  E  I  G  I  D  D  S  G  *  N  S  L  G  E  F  S  V  *  S  E  V  F  F  G  I  L  L  W  D  S  S  L  L  I  F  S  F  F  S  L  T  Y  L  C  E  V  C  T  S  I  T  I  S  S  H  Y  D  K  D  C  M  Q  F  *  L  F  S  P  W  P  I  R  Y  L  *  L  L  F  Y  V  K  *  F  Q  F  T  *  L  N  I  T  W  N   : *  E  V  I  E  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30009" stop="30203"/>
                    <exon start="32252" stop="32305"/>
                    <exon start="32399" stop="32544"/>
                    <exon start="32621" stop="32942"/>
                    <exon start="33069" stop="33140"/>
                    <exon start="35370" stop="35435"/>
                    <exon start="35519" stop="35542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLVPASKMTTSFGTTATPAASASPAVFPAKNAPKSLTLLPFCHHRHYNHLRSKLSITPKLRFSCKGLQSNWNHSVVTRAQSNEVALGGSSNNAATPITQSEEVKSPSETSSATSVSEEAISNFISQVSSLVKLVDSRDVVELQLKQFDCEILIRKKEALPQPPAPVPAQAPFIQSYHVPSIQSNASPPPAPAPSPAPIQTPAPSPAAAKSADSSLPPLKSPMAGTFYRSPAPGEPAFVKVGDKVQKGQVLCIIEAMKLMNEIEADRSGTIVEVVAEDGKPVSVDTPLFVIKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="38565" PGL_stop="36040"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38565" e_stop="38200"/>
            <exon e_start="36543" e_stop="36444"/>
            <exon e_start="36365" e_stop="36040"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38565" e_stop="38200" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="38199" i_stop="36544" i_length="1656"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36543" e_stop="36444" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36365" e_stop="36040" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38565" stop="38200"/>
              <exon start="36543" stop="36444"/>
              <exon start="36365" stop="36040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTCTACCTATACATACAGAGCTATACGTATAGATTGATAATAGCAAAAATGGCGTTACAAGTTCAAGTAAATCAGGTACCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAGTCAGCATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTG : GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG : CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAATCAAGAAA</gDNA_template>
            <first_frame> L  S  L  P  I  H  T  E  L  Y  V  *  I  D  N  S  K  N  G  V  T  S  S  S  K  S  G  T  I  E  V  I  N  G  A  G  A  G  A  V  S  I  F  F  V  E  V  Q  Q  T  V  S  G  M  R  C  R  R  L  W  L  L  V  *  G  F  E  E  Q  R  I  E  L  E  G  E  V  *  *  L  R  C  Y  C  Y  Y  Y  D  C  D  G  G  T  G  D  G  S  L  *  G  Y  L  L  A  D  C  *  S  R  R  *  K  N  R  C  S  *  H  V  Y  T  V  :  V  W  S  L  *  S  D  C  S  K  V  S  R  A  I  K  E  I  *  R  C  G  L  S  E  A  G  L  *  P  G  Q  Q   : A  T  S  K  G  T  R  H  K  G  G  S  N  I  Q  D  S  E  E  Q  *  D  R  *  R  S  H  R  S  K  T  *  *  F  S  S  S  N  *  G  C  A  I  K  L  N  I  S  S  F  F  F  L  *  L  L  L  F  K  Y  E  A  D  N  V  Y  E  C  R  K  L  V  L  T  K  F  S  V  *  P  W  I  M  K  S  H  *  R  K  W  M  *  C  T  C  L  A  N  V  F  I  L  L  W  R  V  I  K  K </first_frame>
            <second_frame>  S  L  Y  L  Y  I  Q  S  Y  T  Y  R  L  I  I  A  K  M  A  L  Q  V  Q  V  N  Q  V  P  L  K  S  S  M  A  P  V  P  A  Q  S  A  S  S  S  W  R  F  N  K  Q  S  V  V  C  V  A  G  D  Y  G  F  S  S  R  V  L  R  N  R  G  L  S  L  R  V  K  C  S  S  S  D  A  T  V  T  T  T  T  V  T  V  G  Q  V  T  E  V  C  K  D  T  F  W  P  I  V  E  A  A  G  E  K  T  V  V  V  D  M  Y  T  Q  W :   C  G  P  C  K  V  I  A  P  K  F  Q  E  L  S  K  K  Y  N  D  V  V  F  L  K  L  D  C  N  Q  D  N  R  :  P  L  A  K  E  L  G  I  K  V  V  P  T  F  K  I  L  K  N  N  K  I  V  K  E  V  T  G  A  K  L  D  D  L  V  A  A  I  E  G  V  R  S  S  *  I  F  L  L  F  F  F  Y  D  F  F  C  L  N  M  K  Q  I  M  S  M  N  V  V  N  *  F  *  L  N  S  V  Y  S  R  G  *  *  S  L  I  R  E  N  G  C  D  V  L  V  L  P  M  F  L  F  Y  Y  G  E  *  S  R   </second_frame>
            <third_frame>   L  S  T  Y  T  Y  R  A  I  R  I  D  *  *  *  Q  K  W  R  Y  K  F  K  *  I  R  Y  H  *  S  H  Q  W  R  R  C  R  R  S  Q  H  L  L  R  G  G  S  T  N  S  Q  W  Y  A  L  Q  E  I  M  A  S  R  L  G  F  *  G  T  E  D  *  A  *  G  *  S  V  V  A  Q  M  L  L  L  L  L  R  L  *  R  W  D  R  *  R  K  F  V  R  I  P  F  G  R  L  L  K  P  P  V  K  K  P  L  *  L  T  C  I  H  S   : G  V  V  L  V  K  *  L  L  Q  S  F  K  S  Y  Q  R  N  I  T  M  W  S  F  *  S  W  T  V  T  R  T  T  G :   H  *  Q  R  N  *  A  *  R  W  F  Q  H  S  R  F  *  R  T  I  R  S  L  K  K  S  P  E  Q  N  L  M  I  *  *  Q  Q  L  R  V  C  D  Q  V  K  Y  F  F  F  F  F  S  M  T  S  S  V  *  I  *  S  R  *  C  L  *  M  S  *  I  S  S  N  *  I  Q  C  I  A  V  D  N  E  V  S  L  E  K  M  D  V  M  Y  L  S  C  Q  C  F  Y  F  T  M  E  S  N  Q  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38564" stop="38200"/>
                    <exon start="36543" stop="36444"/>
                    <exon start="36365" stop="36231"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLYLYIQSYTYRLIIAKMALQVQVNQVPLKSSMAPVPAQSASSSWRFNKQSVVCVAGDYGFSSRVLRNRGLSLRVKCSSSDATVTTTTVTVGQVTEVCKDTFWPIVEAAGEKTVVVDMYTQWCGPCKVIAPKFQELSKKYNDVVFLKLDCNQDNRPLAKELGIKVVPTFKILKNNKIVKEVTGAKLDDLVAAIEGVRSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="44201" PGL_stop="47751"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44201" e_stop="44222"/>
            <exon e_start="44299" e_stop="44370"/>
            <exon e_start="44916" e_stop="44989"/>
            <exon e_start="45730" e_stop="46392"/>
            <exon e_start="46472" e_stop="46597"/>
            <exon e_start="46738" e_stop="46842"/>
            <exon e_start="46926" e_stop="47000"/>
            <exon e_start="47155" e_stop="47618"/>
            <exon e_start="47743" e_stop="47751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.281" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.821" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.720" e_score="0.989"/>
          <exon-only e_score="0.444"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44201" e_stop="44222" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.281" acc_prob="0.980">
            <gDNA_intron_boundary i_start="44223" i_stop="44298" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44299" e_stop="44370" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.993">
            <gDNA_intron_boundary i_start="44371" i_stop="44915" i_length="545"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44916" e_stop="44989" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.876" acc_prob="0.997">
            <gDNA_intron_boundary i_start="44990" i_stop="45729" i_length="740"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45730" e_stop="46392" e_length="663"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.882">
            <gDNA_intron_boundary i_start="46393" i_stop="46471" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46472" e_stop="46597" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.821">
            <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46738" e_stop="46842" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46926" e_stop="47000" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="47155" e_stop="47618" e_length="464"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.720">
            <gDNA_intron_boundary i_start="47619" i_stop="47742" i_length="124"/>
          </intron>
          <exon e_serial="9" e_score="0.444">
            <gDNA_exon_boundary e_start="47743" e_stop="47751" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44201" stop="44222"/>
              <exon start="44299" stop="44370"/>
              <exon start="44916" stop="44989"/>
              <exon start="45730" stop="46392"/>
              <exon start="46472" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47618"/>
              <exon start="47743" stop="47751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCCTACAGTAATATGTAGAG : CTTATGCCAAAGCTCTTGAAGATGCTGTTGCCGTGCTTGACAAAATTGCAATGACAGTTGATGTTGAAGATC : GTGAAACAATGTTGGGTTTGGTTAAGAGTTGCATCGGCACAAAATTTACTAGTCAATTTGGGGATTTAATTTCA : GATTTAGCAATTGATGCCACAAGAATGGTTGGTGTGGAACTTGGCCAAGGGTTACGCGAGGTGGACATCAAGAAGTACATCAAGATTGAGAAGGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAG : GATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAG : TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG : CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG : ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGATCCAACAAATTGAAG : GAGGCACAA</gDNA_template>
            <first_frame> H  P  T  V  I  C  R   : A  Y  A  K  A  L  E  D  A  V  A  V  L  D  K  I  A  M  T  V  D  V  E  D   : R  E  T  M  L  G  L  V  K  S  C  I  G  T  K  F  T  S  Q  F  G  D  L  I  S  :  D  L  A  I  D  A  T  R  M  V  G  V  E  L  G  Q  G  L  R  E  V  D  I  K  K  Y  I  K  I  E  K  V  P  G  G  Q  L  E  D  S  V  V  L  K  G  V  M  M  N  K  D  V  V  A  P  G  K  M  K  R  K  I  V  N  P  R  I  I  L  L  D  C  P  L  E  Y  K  K  G  E  N  Q  T  N  A  E  L  L  R  E  E  D  W  T  V  L  L  K  M  E  E  E  Y  I  E  N  M  C  A  Q  I  L  K  F  K  P  D  V  V  I  T  E  K  G  L  S  D  L  A  C  H  Y  L  C  K  A  G  V  S  A  I  R  R  L  R  K  T  D  N  N  R  I  A  K  A  C  G  A  V  I  V  N  R  P  D  E  L  Q  E  S  D  V  G  T  G  A  G  L  F  E  V  K  K  I  G  D  E  F  F  T  F  I  V  D  C  K  D  P  K  A  C  T  I  L  L  R  G  A  S  K  D  L  L  N  E  V  E  R  N  L  Q  :  D  A  M  S  V  A  R  N  I  I  K  C  P  K  L  V  P  G  G  G  A  T  E  L  T  V  S  A  M  L  K  Q  K  S  S  S  V  E  G  I  E  K  :  W  P  Y  E  A  A  A  I  A  F  E  A  I  P  R  T  L  A  Q  N  C  G  V  N  V  I  R  T  M  T  A  L  Q  G  K  :  H  A  N  G  E  N  A  W  I  G  I  D  G  N  T  G  E  I  T  D  M  K  E  R  K  :  I  W  D  S  Y  A  V  K  A  Q  A  F  K  T  A  I  E  A  A  C  L  L  L  R  I  D  D  I  V  S  G  I  K  K  K  Q  A  P  G  A  G  Q  G  P  S  K  P  K  I  D  E  E  G  D  A  D  N  D  Q  L  I  P  E  *  T  *  Y  T  M  L  Q  W  K  C  L  C  I  *  *  P  L  G  S  F  H  L  L  Q  Y  S  L  P  L  T  D  C  L  N  F  L  C  L  T  C  N  F  C  C  F  *  L  L  A  V  V  G  C  I  *  N  R  F  C  F  S  F  W  F  *  I  K  F  D  V  A  S  T  M  T  N  Q  C  R  G  I  M  F  F  K  D  P  T  N  *  R :   R  H   </first_frame>
            <second_frame>  I  L  Q  *  Y  V  E  :  L  M  P  K  L  L  K  M  L  L  P  C  L  T  K  L  Q  *  Q  L  M  L  K  I  :  V  K  Q  C  W  V  W  L  R  V  A  S  A  Q  N  L  L  V  N  L  G  I  *  F  Q :   I  *  Q  L  M  P  Q  E  W  L  V  W  N  L  A  K  G  Y  A  R  W  T  S  R  S  T  S  R  L  R  R  C  L  V  G  S  W  K  T  L  W  C  L  K  E  *  *  *  T  K  M  *  L  P  L  A  K  *  R  E  R  L  *  T  L  A  S  F  Y  L  I  V  P  *  S  T  R  K  V  R  T  K  Q  M  Q  S  S  L  E  R  R  I  G  L  S  S  *  K  W  K  K  S  T  L  R  T  C  A  H  R  Y  L  N  S  S  R  M  W  L  L  L  K  R  D  S  V  I  W  H  A  I  I  C  A  R  L  V  S  V  Q  S  E  G  *  G  R  Q  T  I  T  E  L  L  R  H  V  G  Q  L  L  L  I  D  L  M  S  C  K  N  L  M  L  V  L  V  P  V  C  L  K  *  K  K  L  G  M  S  S  L  L  L  L  L  I  A  R  I  R  K  H  V  L  Y  F  *  G  V  R  A  K  I  Y  *  M  K  *  K  E  I  Y  R :   M  P  C  L  S  L  E  T  S  S  S  V  L  S  *  F  P  V  V  V  Q  Q  S  *  L  Y  L  P  C  *  S  R  K  V  H  P  L  K  A  *  K  S :   G  R  M  K  L  L  Q  L  L  L  K  L  Y  H  E  L  W  L  R  T  V  V  *  M  *  F  V  L  *  P  L  F  K  E  S :   M  Q  M  A  R  M  H  G  *  A  L  M  E  T  L  V  R  L  P  T  *  K  S  G  R :   Y  G  I  P  M  L  *  K  H  R  L  L  K  L  P  L  K  L  L  A  Y  F  *  E  L  M  T  L  *  V  E  *  R  R  S  K  P  L  E  Q  D  K  V  H  Q  N  Q  K  *  T  K  K  V  M  Q  T  M  T  S  *  F  R  N  E  H  D  I  L  C  C  N  G  N  A  Y  A  F  D  N  H  L  E  V  F  I  Y  F  S  I  V  C  P  *  L  I  A  *  T  F  C  A  *  H  V  T  S  A  V  F  D  C  W  Q  L  L  V  V  F  E  I  D  F  V  S  V  F  G  F  K  L  N  L  M  L  Q  V  Q  *  L  I  N  V  G  V  S  C  F  S  R  I  Q  Q  I  E   : G  G  T  </second_frame>
            <third_frame>   S  Y  S  N  M  *  S :   L  C  Q  S  S  *  R  C  C  C  R  A  *  Q  N  C  N  D  S  *  C  *  R  S :   *  N  N  V  G  F  G  *  E  L  H  R  H  K  I  Y  *  S  I  W  G  F  N  F   : R  F  S  N  *  C  H  K  N  G  W  C  G  T  W  P  R  V  T  R  G  G  H  Q  E  V  H  Q  D  *  E  G  A  W  W  A  V  G  R  L  C  G  A  *  R  S  N  D  E  Q  R  C  S  C  P  W  Q  N  E  E  K  D  C  K  P  S  H  H  S  T  *  L  S  P  R  V  Q  E  R  *  E  P  N  K  C  R  A  P  *  R  G  G  L  D  C  P  L  E  N  G  R  R  V  H  *  E  H  V  R  T  D  T  *  I  Q  A  G  C  G  Y  Y  *  K  G  T  Q  *  S  G  M  P  L  S  V  Q  G  W  C  Q  C  N  Q  K  A  K  E  D  R  Q  *  Q  N  C  *  G  M  W  G  S  Y  C  *  *  T  *  *  V  A  R  I  *  C  W  Y  W  C  R  S  V  *  S  E  K  N  W  G  *  V  L  Y  F  Y  C  *  L  Q  G  S  E  S  M  Y  Y  T  F  K  G  C  E  Q  R  S  T  E  *  S  R  K  K  S  T   : G  C  H  V  C  R  *  K  H  H  Q  V  S  *  A  S  S  R  W  W  C  N  R  V  N  C  I  C  H  V  K  A  E  K  F  I  R  *  R  H  R  K   : V  A  V  *  S  C  C  N  C  F  *  S  Y  T  T  N  F  G  S  E  L  W  C  K  C  D  S  Y  Y  D  R  S  S  R  K   : A  C  K  W  R  E  C  M  D  R  H  *  W  K  H  W  *  D  Y  R  H  E  R  A  E   : D  M  G  F  L  C  C  K  S  T  G  F  *  N  C  H  *  S  C  L  P  T  S  E  N  *  *  H  C  E  W  N  K  E  E  A  S  P  W  S  R  T  R  S  I  K  T  K  N  R  R  R  R  *  C  R  Q  *  P  A  N  S  G  M  N  M  I  Y  Y  A  A  M  E  M  L  M  H  L  I  T  T  W  K  F  S  S  T  S  V  *  S  A  L  D  *  L  L  E  L  F  V  L  D  M  *  L  L  L  F  L  T  A  G  S  C  W  L  Y  L  K  *  I  L  F  Q  F  L  V  L  N  *  I  *  C  C  K  Y  N  D  *  S  M  *  G  Y  H  V  F  Q  G  S  N  K  L  K  :  E  A  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44201" stop="44222"/>
                    <exon start="44299" stop="44370"/>
                    <exon start="44916" stop="44989"/>
                    <exon start="45730" stop="46392"/>
                    <exon start="46472" stop="46597"/>
                    <exon start="46738" stop="46842"/>
                    <exon start="46926" stop="47000"/>
                    <exon start="47155" stop="47346"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1326</number_coding_nucleotides>
                  <number_encoded_amino_acids>442</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPTVICRAYAKALEDAVAVLDKIAMTVDVEDRETMLGLVKSCIGTKFTSQFGDLISDLAIDATRMVGVELGQGLREVDIKKYIKIEKVPGGQLEDSVVLKGVMMNKDVVAPGKMKRKIVNPRIILLDCPLEYKKGENQTNAELLREEDWTVLLKMEEEYIENMCAQILKFKPDVVITEKGLSDLACHYLCKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFTFIVDCKDPKACTILLRGASKDLLNEVERNLQDAMSVARNIIKCPKLVPGGGATELTVSAMLKQKSSSVEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGEITDMKERKIWDSYAVKAQAFKTAIEAACLLLRIDDIVSGIKKKQAPGAGQGPSKPKIDEEGDADNDQLIPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="54484" PGL_stop="48899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54484" e_stop="54178"/>
            <exon e_start="52308" e_stop="51297"/>
            <exon e_start="50312" e_stop="49948"/>
            <exon e_start="49397" e_stop="49328"/>
            <exon e_start="49226" e_stop="48899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.865" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54484" e_stop="54178" e_length="307"/>
          </exon>
          <intron i_serial="1" don_prob="0.865" acc_prob="0.975">
            <gDNA_intron_boundary i_start="54177" i_stop="52309" i_length="1869"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52308" e_stop="51297" e_length="1012"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51296" i_stop="50313" i_length="984"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50312" e_stop="49948" e_length="365"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49947" i_stop="49398" i_length="550"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49397" e_stop="49328" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49327" i_stop="49227" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49226" e_stop="48899" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54484" stop="54178"/>
              <exon start="52308" stop="51297"/>
              <exon start="50312" stop="49948"/>
              <exon start="49397" stop="49328"/>
              <exon start="49226" stop="48899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50130" stop="49948"/>
              <exon start="49397" stop="49328"/>
              <exon start="49226" stop="48938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336202" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATTCTTCTTCTTCTTTATCCTCTCCATTTTCTTCCTTTTTTTCAATTTCTCATTTCTTCTGGACGATCGCCGGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAG : TTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCTTGAGCCAGAGCCTGAGAGAGAAACCTTCCCCAACTTATCCGTTCCGCCCACTTCCTTAAGGGGTCCATCTCAAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTGCTGCTACCGTCTGTAAGTTTTCCATCGTTAATGGCTACTAAAGAGTCTGATGCAAATCATAGTCAAGTTGGCGATTCTTGTTTCAACCAGACTGATGGTTTTATCCGAGAAAGAGGTTTTCTAGAGGTGTGTCGAAAGCTGAAAGAGCTCCAGCCATGGGCTGATGACACCTTGATCGCAGATGTCTTGGCTGGTGTAAATGATTTCAATAAGGCCTTGACATTGTTGGATGCAATGGTATCTCCTGATCATACATATGTTGCACATGACAACAGAACAACTCCAGAAGAAGCAGATACTCCCTACATACAAAACCTTAAAGACGTAGACACAGATACTAAAGGGGTCAAGTCTAGTAGTAAGAATTCTCTCATGAATATTAACAAGTTTGCTGCTAATAAAGGTGTGTCATTGACAGACAATGTGGATATGGATGAATTGAGCCATGCACTTGCCAAGTGTCTTCAGAGCAACAGTCAGGAACTAATAAATAACTGTGTTTCTCACGAGAACAAACTTCATTTTGATGGAGCAGTGGGGAGTATGAGCTTTGTACCGGTTGAGCCTGAGTGGGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAG : GTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAG : GTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGG : ATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTAGACCCAAGTTCCGACCACGATAAATACGTTCATATGTATATTTTGGGTCCCAATTTAGTGCATTTGTTTCTGTTGCTATCAACTTTGACCTAGAGATTTTGAGTCTTGAACTGGTCTTATAAAAACGACCAGAAACCTGTTGTGGTTATATACTGTTGAATATTTCTGTAATTGCATACCATCAAACATTGTATGTACTTTGCTGATTTCTCCACAGGTCCAAACTAACACTTGAAAGTATATTGGAGGTAGCTTGGTCAAGTGTCTCAAATTACTATTCACGGTGA</gDNA_template>
            <first_frame> *  I  L  L  L  L  Y  P  L  H  F  L  P  F  F  Q  F  L  I  S  S  G  R  S  P  E  T  Q  S  E  N  S  P  T  V  Y  G  L  Q  K  Q  I  P  I  S  I  A  V  R  R  L  R  R  R  Q  Q  Q  I  S  D  S  S  V  F  I  S  A  L  *  S  F  I  Y  S  F  H  P  V  D  T  I  P  P  V  Q  F  F  L  I  Y  L  T  I  F  L  Y  A  K  R  T  P  K   : V  Y  S  F  S  K  A  V  I  V  L  I  I  R  S  Q  N  L  N  L  N  *  G  D  T  N  *  I  I  A  K  K  R  W  W  C  G  L  K  *  F  K  C  F  Q  C  Q  L  K  M  A  A  S  T  S  V  T  S  P  L  H  K  K  M  S  G  R  R  A  K  T  S  G  W  A  A  F  D  L  N  E  R  L  K  Q  Q  N  L  E  P  E  P  E  R  E  T  F  P  N  L  S  V  P  P  T  S  L  R  G  P  S  Q  S  I  A  K  N  S  G  A  T  L  E  K  P  F  S  S  L  L  L  P  S  V  S  F  P  S  L  M  A  T  K  E  S  D  A  N  H  S  Q  V  G  D  S  C  F  N  Q  T  D  G  F  I  R  E  R  G  F  L  E  V  C  R  K  L  K  E  L  Q  P  W  A  D  D  T  L  I  A  D  V  L  A  G  V  N  D  F  N  K  A  L  T  L  L  D  A  M  V  S  P  D  H  T  Y  V  A  H  D  N  R  T  T  P  E  E  A  D  T  P  Y  I  Q  N  L  K  D  V  D  T  D  T  K  G  V  K  S  S  S  K  N  S  L  M  N  I  N  K  F  A  A  N  K  G  V  S  L  T  D  N  V  D  M  D  E  L  S  H  A  L  A  K  C  L  Q  S  N  S  Q  E  L  I  N  N  C  V  S  H  E  N  K  L  H  F  D  G  A  V  G  S  M  S  F  V  P  V  E  P  E  W  E  E  D  D  I  Y  S  I  H  R  K  D  A  V  K  M  T  R :   S  A  A  R  H  S  K  A  A  S  E  A  Y  L  R  G  D  H  L  S  A  Q  H  F  S  L  K  A  Q  E  E  W  D  A  A  N  R  L  N  A  Q  A  A  K  E  I  L  T  A  C  N  G  K  N  D  Q  W  T  L  D  L  H  G  L  H  A  K  E  A  V  Q  A  L  Q  E  H  L  Q  K  I  E  S  Q  V  A  Q  N  K  R  S  F  G  A  A  V  S  F  D  V  E  N  E  S  K  G  S  H  L  L  N  K  Q  R  P  A  F  L  E  V  I  T   : G  K  G  I  H  S  R  G  Q  A  A  L  P  M  A  I  R  S  F  L  V  E  K  G :   Y  R  Y  E  E  T  R  P  G  V  I  T  V  R  P  K  F  R  P  R  *  I  R  S  Y  V  Y  F  G  S  Q  F  S  A  F  V  S  V  A  I  N  F  D  L  E  I  L  S  L  E  L  V  L  *  K  R  P  E  T  C  C  G  Y  I  L  L  N  I  S  V  I  A  Y  H  Q  T  L  Y  V  L  C  *  F  L  H  R  S  K  L  T  L  E  S  I  L  E  V  A  W  S  S  V  S  N  Y  Y  S  R  * </first_frame>
            <second_frame>  E  F  F  F  F  F  I  L  S  I  F  F  L  F  F  N  F  S  F  L  L  D  D  R  R  R  L  N  R  K  I  H  Q  L  F  M  D  C  R  S  R  S  L  S  A  S  P  S  A  V  S  A  A  V  N  N  K  Y  P  I  L  Q  F  S  S  Q  L  S  N  P  S  Y  T  P  F  T  P  W  I  R  Y  L  R  F  S  F  S  *  F  I  L  Q  F  F  Y  M  R  R  E  L  P  K  :  F  T  L  S  V  K  L  S  L  F  *  *  S  G  A  K  T  *  T  *  I  K  E  T  L  I  K  L  *  P  R  R  G  G  G  V  A  *  N  D  L  S  A  F  N  V  N  L  R  W  L  L  L  R  V  *  Q  V  L  Y  I  R  R  C  L  G  G  G  L  R  L  L  V  G  L  H  L  T  S  M  R  D  *  S  N  K  I  L  S  Q  S  L  R  E  K  P  S  P  T  Y  P  F  R  P  L  P  *  G  V  H  L  K  A  S  Q  R  T  V  E  Q  L  *  R  S  L  F  H  P  C  C  Y  R  L  *  V  F  H  R  *  W  L  L  K  S  L  M  Q  I  I  V  K  L  A  I  L  V  S  T  R  L  M  V  L  S  E  K  E  V  F  *  R  C  V  E  S  *  K  S  S  S  H  G  L  M  T  P  *  S  Q  M  S  W  L  V  *  M  I  S  I  R  P  *  H  C  W  M  Q  W  Y  L  L  I  I  H  M  L  H  M  T  T  E  Q  L  Q  K  K  Q  I  L  P  T  Y  K  T  L  K  T  *  T  Q  I  L  K  G  S  S  L  V  V  R  I  L  S  *  I  L  T  S  L  L  L  I  K  V  C  H  *  Q  T  M  W  I  W  M  N  *  A  M  H  L  P  S  V  F  R  A  T  V  R  N  *  *  I  T  V  F  L  T  R  T  N  F  I  L  M  E  Q  W  G  V  *  A  L  Y  R  L  S  L  S  G  K  R  M  I  F  T  R  S  I  G  R  M  Q  *  R  *  R   : G  R  Q  P  D  I  L  R  L  P  V  R  P  I  S  E  E  T  T  Y  L  P  N  I  F  L  *  K  P  K  K  S  G  M  L  L  I  G  *  M  P  R  L  Q  K  K  F  *  L  P  A  T  V  R  M  I  N  G  H  W  T  C  M  V  F  M  Q  K  R  Q  F  K  P  Y  K  N  I  C  K  R  L  N  L  R  W  H  R  I  S  A  A  L  E  L  L  S  L  L  M  W  R  M  R  A  K  G  P  T  Y  *  I  S  S  G  Q  L  S  *  R  S  *  Q  :  V  K  V  F  I  A  G  D  K  L  H  F  Q  W  L  *  E  A  F  S  W  R  R   : D  I  V  M  R  R  Q  G  P  G  *  S  Q  L  D  P  S  S  D  H  D  K  Y  V  H  M  Y  I  L  G  P  N  L  V  H  L  F  L  L  L  S  T  L  T  *  R  F  *  V  L  N  W  S  Y  K  N  D  Q  K  P  V  V  V  I  Y  C  *  I  F  L  *  L  H  T  I  K  H  C  M  Y  F  A  D  F  S  T  G  P  N  *  H  L  K  V  Y  W  R  *  L  G  Q  V  S  Q  I  T  I  H  G   </second_frame>
            <third_frame>   N  S  S  S  S  L  S  S  P  F  S  S  F  F  S  I  S  H  F  F  W  T  I  A  G  D  S  I  G  K  F  T  N  C  L  W  I  A  E  A  D  P  Y  Q  H  R  R  P  P  S  P  P  P  S  T  T  N  I  R  F  F  S  F  H  L  S  S  L  I  L  H  I  L  L  S  P  R  G  Y  D  T  S  G  S  V  F  P  D  L  S  Y  N  F  F  I  C  E  E  N  S  Q  S :   L  L  F  Q  *  S  C  H  C  F  N  N  P  E  P  K  L  K  L  E  L  R  R  H  *  L  N  Y  S  Q  E  E  V  V  V  W  L  E  M  I  *  V  L  S  M  S  T  *  D  G  C  F  Y  E  C  D  K  S  S  T  *  E  D  V  W  E  E  G  *  D  F  W  L  G  C  I  *  P  Q  *  E  T  E  A  T  K  S  *  A  R  A  *  E  R  N  L  P  Q  L  I  R  S  A  H  F  L  K  G  S  I  S  K  H  R  K  E  Q  W  S  N  S  R  E  A  F  F  I  L  A  A  T  V  C  K  F  S  I  V  N  G  Y  *  R  V  *  C  K  S  *  S  S  W  R  F  L  F  Q  P  D  *  W  F  Y  P  R  K  R  F  S  R  G  V  S  K  A  E  R  A  P  A  M  G  *  *  H  L  D  R  R  C  L  G  W  C  K  *  F  Q  *  G  L  D  I  V  G  C  N  G  I  S  *  S  Y  I  C  C  T  *  Q  Q  N  N  S  R  R  S  R  Y  S  L  H  T  K  P  *  R  R  R  H  R  Y  *  R  G  Q  V  *  *  *  E  F  S  H  E  Y  *  Q  V  C  C  *  *  R  C  V  I  D  R  Q  C  G  Y  G  *  I  E  P  C  T  C  Q  V  S  S  E  Q  Q  S  G  T  N  K  *  L  C  F  S  R  E  Q  T  S  F  *  W  S  S  G  E  Y  E  L  C  T  G  *  A  *  V  G  R  G  *  Y  L  L  D  P  S  E  G  C  S  E  D  D  E  :  V  G  S  P  T  F  *  G  C  Q  *  G  L  S  Q  R  R  P  L  I  C  P  T  F  F  S  K  S  P  R  R  V  G  C  C  *  *  A  K  C  P  G  C  K  R  N  F  D  C  L  Q  R  *  E  *  S  M  D  T  G  L  A  W  S  S  C  K  R  G  S  S  S  L  T  R  T  F  A  K  D  *  I  S  G  G  T  E  *  A  Q  L  W  S  C  C  L  F  *  C  G  E  *  E  Q  R  V  P  P  I  E  *  A  A  A  S  F  L  R  G  H  N  R :   *  R  Y  S  *  P  G  T  S  C  T  S  N  G  Y  K  K  L  S  R  G  E  G  :  I  S  L  *  G  D  K  A  R  G  D  H  S  *  T  Q  V  P  T  T  I  N  T  F  I  C  I  F  W  V  P  I  *  C  I  C  F  C  C  Y  Q  L  *  P  R  D  F  E  S  *  T  G  L  I  K  T  T  R  N  L  L  W  L  Y  T  V  E  Y  F  C  N  C  I  P  S  N  I  V  C  T  L  L  I  S  P  Q  V  Q  T  N  T  *  K  Y  I  G  G  S  L  V  K  C  L  K  L  L  F  T  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52189" stop="51297"/>
                    <exon start="50312" stop="49948"/>
                    <exon start="49397" stop="49328"/>
                    <exon start="49226" stop="49163"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1389</number_coding_nucleotides>
                  <number_encoded_amino_acids>463</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKCFQCQLKMAASTSVTSPLHKKMSGRRAKTSGWAAFDLNERLKQQNLEPEPERETFPNLSVPPTSLRGPSQSIAKNSGATLEKPFSSLLLPSVSFPSLMATKESDANHSQVGDSCFNQTDGFIRERGFLEVCRKLKELQPWADDTLIADVLAGVNDFNKALTLLDAMVSPDHTYVAHDNRTTPEEADTPYIQNLKDVDTDTKGVKSSSKNSLMNINKFAANKGVSLTDNVDMDELSHALAKCLQSNSQELINNCVSHENKLHFDGAVGSMSFVPVEPEWEEDDIYSIHRKDAVKMTRSAARHSKAASEAYLRGDHLSAQHFSLKAQEEWDAANRLNAQAAKEILTACNGKNDQWTLDLHGLHAKEAVQALQEHLQKIESQVAQNKRSFGAAVSFDVENESKGSHLLNKQRPAFLEVITGKGIHSRGQAALPMAIRSFLVEKGYRYEETRPGVITVRPKFRPR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54482" stop="54178"/>
                    <exon start="52308" stop="52293"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSSSLSSPFSSFFSISHFFWTIAGDSIGKFTNCLWIAEADPYQHRRPPSPPPSTTNIRFFSFHLSSLILHILLSPRGYDTSGSVFPDLSYNFFICEENSQSLLFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52960" e_stop="52445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="52960" e_stop="52445" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52960" stop="52445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTAAACTTTACTGAAGGTGATTATTGTACGGCATCAAGATTTTGAACAGAAATACATGTTAATTATGGTTTTCCTAAATTTTTAGCTTAACGTTGGATTTTCTGCTTCTGAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGATATTAAAAAGGAAAAAAAAAAG</gDNA_template>
            <first_frame> K  I  K  L  Y  *  R  *  L  L  Y  G  I  K  I  L  N  R  N  T  C  *  L  W  F  S  *  I  F  S  L  T  L  D  F  L  L  L  N  A  A  I  S  L  K  M  *  K  V  H  V  F  T  K  I  I  V  G  D  K  L  C  K  N  C  F  L  L  L  C  T  S  G  E  V  D  T  I  Q  C  F  N  W  I  G  L  L  K  L  I  C  I  V  V  T  D  Q  K  V  T  S  G  S  P  S  G  *  G  G  D  *  L  P  R  D  F  K  F  *  S  *  L  E  H  L  M  S  S  P  D  L  T  L  V  S  M  I  T  S  K  T  Y  A  C  R  L  D  R  L  F  V  E  L  I  M  W  A  Q  A  S  R  D  T  I  D  I  K  K  E  K  K  K </first_frame>
            <second_frame>  K  L  N  F  T  E  G  D  Y  C  T  A  S  R  F  *  T  E  I  H  V  N  Y  G  F  P  K  F  L  A  *  R  W  I  F  C  F  *  M  L  Q  *  V  *  K  C  R  K  F  M  F  L  L  K  L  L  *  E  I  S  F  V  K  I  V  F  Y  F  Y  V  Q  V  E  R  *  I  P  Y  N  V  L  I  G  S  D  Y  S  N  *  F  A  S  W  *  L  I  K  R  S  Q  V  E  V  L  V  V  E  V  G  T  N  Y  L  E  I  S  S  F  N  P  S  L  N  T  *  *  V  H  L  I  *  P  W  *  A  *  S  H  Q  K  P  M  L  V  G  W  T  G  C  L  L  N  *  S  C  G  H  K  L  A  A  T  P  *  I  L  K  R  K  K  K   </second_frame>
            <third_frame>   N  *  T  L  L  K  V  I  I  V  R  H  Q  D  F  E  Q  K  Y  M  L  I  M  V  F  L  N  F  *  L  N  V  G  F  S  A  S  E  C  C  N  K  F  E  N  V  E  S  S  C  F  Y  *  N  Y  C  R  R  *  A  L  *  K  L  F  F  T  F  M  Y  K  W  R  G  R  Y  H  T  M  F  *  L  D  R  I  T  Q  I  N  L  H  R  G  N  *  S  K  G  H  K  W  K  S  *  W  L  R  W  G  L  T  T  *  R  F  Q  V  L  I  L  A  *  T  L  D  E  F  T  *  S  N  L  G  E  H  D  H  I  K  N  L  C  L  S  V  G  Q  A  V  C  *  I  N  H  V  G  T  S  *  P  R  H  H  R  Y  *  K  G  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0251J13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="54410" e_stop="53166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54410" e_stop="53166" e_length="1245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54410" stop="53166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317599" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAGGTATATTGACGATTTTGCCCTTGATTCCTGCTAACATGTGTTTACGAAGAATTGTTTTTCTTAAACTGAAGGTTGGATTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATCAATTAAGATGGGCATTATGGTAAAGTATTCATATTAATCATTGTTTCTTAAGAGACGTGTAAAGTCTTAAAAGTGGATAACTAAAAGTGAATGAAGGGAATACTTGATATTTTCCTAAAGTTAAGCTAAAGTTTGGATTCTTACTGCTAAAAAAAAGGTTGGATGTTTACTGTTTCTGAATGATTGCTAAGGAACTGAAGTCCTTAGAGATTTGAAATCTTACTGTAGGTGGTTATTGAAGGACATGAAAGTTTTGAACAGGAATACAAAATTGATTGTAGTTCTCCTAAAAGTGAGCTAAAGGTTGGATTTTTACTACTTTCAAAAAAAAAA</gDNA_template>
            <first_frame> G  D  S  I  G  K  F  T  N  C  L  W  I  A  E  A  D  P  Y  Q  H  R  R  P  P  S  P  P  P  S  T  T  N  I  R  F  F  S  F  H  L  S  S  L  I  L  H  I  L  L  S  P  R  G  Y  D  T  S  G  S  V  F  P  D  L  S  Y  N  F  F  I  C  E  E  N  S  Q  R  Y  I  D  D  F  A  L  D  S  C  *  H  V  F  T  K  N  C  F  S  *  T  E  G  W  I  F  T  A  L  S  K  K  K  Q  R  K  N  W  S  L  V  V  S  E  W  Y  K  G  F  V  C  C  R  N  S  F  I  L  *  L  C  C  L  G  H  P  V  H  T  *  T  T  D  T  S  I  D  N  I  H  H  K  *  P  R  T  N  R  K  K  S  P  C  V  *  F  L  K  P  C  R  S  Q  W  S  P  L  S  H  T  L  R  L  S  F  K  K  L  *  V  *  *  S  *  *  L  L  D  I  K  A  L  I  R  N  I  Y  Y  S  L  C  L  L  L  L  V  C  F  Q  I  I  V  F  H  F  N  L  A  L  L  T  Y  I  A  W  T  L  Q  K  L  Q  P  H  P  C  W  I  L  *  K  E  D  L  T  C  T  Q  *  N  V  *  R  G  R  A  T  *  L  L  T  Y  *  E  K  T  F  P  W  C  *  S  L  I  P  Q  I  I  F  Q  D  L  I  L  N  I  N  *  D  G  H  Y  G  K  V  F  I  L  I  I  V  S  *  E  T  C  K  V  L  K  V  D  N  *  K  *  M  K  G  I  L  D  I  F  L  K  L  S  *  S  L  D  S  Y  C  *  K  K  G  W  M  F  T  V  S  E  *  L  L  R  N  *  S  P  *  R  F  E  I  L  L  *  V  V  I  E  G  H  E  S  F  E  Q  E  Y  K  I  D  C  S  S  P  K  S  E  L  K  V  G  F  L  L  L  S  K  K  K </first_frame>
            <second_frame>  E  T  Q  S  E  N  S  P  T  V  Y  G  L  Q  K  Q  I  P  I  S  I  A  V  R  R  L  R  R  R  Q  Q  Q  I  S  D  S  S  V  F  I  S  A  L  *  S  F  I  Y  S  F  H  P  V  D  T  I  P  P  V  Q  F  F  L  I  Y  L  T  I  F  L  Y  A  K  R  T  P  K  G  I  L  T  I  L  P  L  I  P  A  N  M  C  L  R  R  I  V  F  L  K  L  K  V  G  F  L  L  L  Y  Q  K  K  N  K  G  K  I  G  V  *  L  F  L  N  G  I  K  V  L  Y  V  V  G  I  R  L  F  Y  N  C  V  V  W  A  I  L  C  T  P  R  L  R  I  P  P  S  T  T  Y  T  I  S  N  L  E  Q  I  E  R  N  H  L  V  F  S  F  *  N  L  V  D  L  N  G  V  L  *  V  T  P  L  G  *  A  L  R  N  Y  K  F  S  E  A  D  N  Y  W  T  L  R  L  *  L  G  T  Y  I  T  L  S  V  Y  F  Y  L  C  A  F  K  *  L  F  F  T  L  I  W  H  F  *  P  I  L  L  G  L  S  K  N  C  S  R  T  R  V  G  S  S  K  K  R  I  *  H  A  P  S  K  M  F  E  E  A  E  Q  H  S  F  *  H  I  K  K  R  H  S  L  G  V  N  H  L  F  P  K  L  F  F  K  T  L  Y  *  T  S  I  K  M  G  I  M  V  K  Y  S  Y  *  S  L  F  L  K  R  R  V  K  S  *  K  W  I  T  K  S  E  *  R  E  Y  L  I  F  S  *  S  *  A  K  V  W  I  L  T  A  K  K  K  V  G  C  L  L  F  L  N  D  C  *  G  T  E  V  L  R  D  L  K  S  Y  C  R  W  L  L  K  D  M  K  V  L  N  R  N  T  K  L  I  V  V  L  L  K  V  S  *  R  L  D  F  Y  Y  F  Q  K  K   </second_frame>
            <third_frame>   R  L  N  R  K  I  H  Q  L  F  M  D  C  R  S  R  S  L  S  A  S  P  S  A  V  S  A  A  V  N  N  K  Y  P  I  L  Q  F  S  S  Q  L  S  N  P  S  Y  T  P  F  T  P  W  I  R  Y  L  R  F  S  F  S  *  F  I  L  Q  F  F  Y  M  R  R  E  L  P  K  V  Y  *  R  F  C  P  *  F  L  L  T  C  V  Y  E  E  L  F  F  L  N  *  R  L  D  F  Y  C  F  I  K  K  K  T  K  E  K  L  E  F  S  C  F  *  M  V  *  R  F  C  M  L  *  E  F  V  Y  F  I  T  V  L  F  G  P  S  C  A  H  L  D  Y  G  Y  L  H  R  Q  H  T  P  *  V  T  *  N  K  *  K  E  I  T  L  C  L  V  S  E  T  L  S  I  S  M  E  S  S  K  S  H  P  *  V  K  L  *  E  I  I  S  L  V  K  L  I  T  I  G  H  *  G  F  D  *  E  H  I  L  L  S  L  F  T  F  T  C  V  L  S  N  N  C  F  S  L  *  F  G  T  F  N  L  Y  C  L  D  S  P  K  I  A  A  A  P  V  L  D  P  L  K  R  G  S  D  M  H  P  V  K  C  L  K  R  P  S  N  I  A  F  N  I  L  R  K  D  I  P  L  V  L  I  T  Y  S  P  N  Y  F  S  R  P  Y  T  K  H  Q  L  R  W  A  L  W  *  S  I  H  I  N  H  C  F  L  R  D  V  *  S  L  K  S  G  *  L  K  V  N  E  G  N  T  *  Y  F  P  K  V  K  L  K  F  G  F  L  L  L  K  K  R  L  D  V  Y  C  F  *  M  I  A  K  E  L  K  S  L  E  I  *  N  L  T  V  G  G  Y  *  R  T  *  K  F  *  T  G  I  Q  N  *  L  *  F  S  *  K  *  A  K  G  W  I  F  T  T  F  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54410" stop="54144"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDSIGKFTNCLWIAEADPYQHRRPPSPPPSTTNIRFFSFHLSSLILHILLSPRGYDTSGSVFPDLSYNFFICEENSQRYIDDFALDSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53706" stop="53476"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGTFNLYCLDSPKIAAAPVLDPLKRGSDMHPVKCLKRPSNIAFNILRKDIPLVLITYSPNYFSRPYTKHQLRWALW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54277" stop="54053"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFIYSFHPVDTIPPVQFFLIYLTIFLYAKRTPKGILTILPLIPANMCLRRIVFLKLKVGFLLLYQKKNKGKIGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="80159" PGL_stop="67360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80159" e_stop="79713"/>
            <exon e_start="78275" e_stop="78268"/>
            <exon e_start="75451" e_stop="75276"/>
            <exon e_start="73522" e_stop="73462"/>
            <exon e_start="72241" e_stop="72143"/>
            <exon e_start="71301" e_stop="71207"/>
            <exon e_start="70494" e_stop="70381"/>
            <exon e_start="69402" e_stop="69335"/>
            <exon e_start="68391" e_stop="68281"/>
            <exon e_start="68038" e_stop="67804"/>
            <exon e_start="67612" e_stop="67360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.993" e_score="0.982"/>
          <exon-intron don_prob="0.957" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.704" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.879" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="80159" e_stop="79713" e_length="447"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79712" i_stop="78276" i_length="1437"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78275" e_stop="78268" e_length="8"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78267" i_stop="75452" i_length="2816"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75451" e_stop="75276" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75275" i_stop="73523" i_length="1753"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73522" e_stop="73462" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.909">
            <gDNA_intron_boundary i_start="73461" i_stop="72242" i_length="1220"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72241" e_stop="72143" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.704" acc_prob="0.992">
            <gDNA_intron_boundary i_start="72142" i_stop="71302" i_length="841"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71301" e_stop="71207" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.990">
            <gDNA_intron_boundary i_start="71206" i_stop="70495" i_length="712"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70494" e_stop="70381" e_length="114"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.975">
            <gDNA_intron_boundary i_start="70380" i_stop="69403" i_length="978"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69402" e_stop="69335" e_length="68"/>
          </exon>
          <intron i_serial="8" don_prob="0.879" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69334" i_stop="68392" i_length="943"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="68391" e_stop="68281" e_length="111"/>
          </exon>
          <intron i_serial="9" don_prob="0.988" acc_prob="0.992">
            <gDNA_intron_boundary i_start="68280" i_stop="68039" i_length="242"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="68038" e_stop="67804" e_length="235"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.987">
            <gDNA_intron_boundary i_start="67803" i_stop="67613" i_length="191"/>
          </intron>
          <exon e_serial="11" e_score="0.964">
            <gDNA_exon_boundary e_start="67612" e_stop="67360" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80159" stop="79713"/>
              <exon start="78275" stop="78268"/>
              <exon start="75451" stop="75276"/>
              <exon start="73522" stop="73462"/>
              <exon start="72241" stop="72143"/>
              <exon start="71301" stop="71207"/>
              <exon start="70494" stop="70381"/>
              <exon start="69402" stop="69335"/>
              <exon start="68391" stop="68281"/>
              <exon start="68038" stop="67804"/>
              <exon start="67612" stop="67360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321733" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATGATCTTTCGAAGGATAAGGACAGACCAAAGGACTGGGAAAAGGACCATGCAAAGAGGGAAGTGTGGAATGGAGTGGAGAGGGAGGTTTTGCAGAGTGAGAAAGAAGTGATTGATGTTCCTGGAAAAACAAACGAGCCGGAAAACTCAACAGTGGAGCAGAAGAAACAGAAAGATCATGATAACTGGAAAAATACTGACAGGGATGGAAGTGAGAGGAGAAAGGAAAGAGATACTGATTTGGAAGGAGAGAGGCCTGAGAAACGTGTCAGGTGTCATGATAAAGAACCAGAGGAAGGGGACCTGGATACTGAAGGAGGAGGAGAAAGGGAAAGAGAAGCTTTTAATTATGGAGTTCAGCAGCGCAAGAGAATGTCGCGGCCAAGAGGGAGCCCCATGGCCAATCGCGATCCTCGTTTTAGGTCGCACACTCATGAAAATGAAGG : ATCTCAAG : TGAAGCATGATGTATCTGCTGTCAATTACAGAGTTGGTGAGTGTATGCCAGAACTGATTAAATTATGGAAGGAATATGAATCATCCAAAGCAGATGAAGCATCTGATAGCTCTCCAAGTGATCCTACTCTAGAAATTAGGATTCCAGCTGAACACGTATCAGCTACAAATCGGCAG : GTGAGAGGTGGCCAACTATGGGGAACAGATATATACACCAATGACTCGGATCTTGTCGCAG : TTCTTATGCACACAGGTTACTGTCGTACAACTGCGTCTCCTCTTTTGCCTACTATTACGGAGTTACGTGCTACTATCAGGGTACTACCTCCACAAAATT : GCTACATATCTACTCTGAGGAACAATGTGCGATCACGTGCGTGGGGAGCTGCAGTTGGCTGCAGCTATCGTATTGAGCGGTGCTCTGTTGTGAAG : AAAGGAGGTGGAACAATCGATCTTGAACCTTGTCTAACACATTCCTCAACCTTGGAGCCTACTCTTGCTCCGGTGGCGGTAGAGCGCACTATGACCACTCGAGCTGCAGCTTCG : AATGCACTACGACAACAGAGGTTTGTACGTGAAGTGACAATTCAGTTCAACTTATGCAATGAGCCTTG : GCTCAAATACAGTATCAGTGTTGTTGCTGACAAGGGTCTAAAAAAGGCCCTTTTTACATCTTCACGCCTGAAGAAGGGAGAAGTTCTTTACTTGGAAACTCATTCTAAGAG : GTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAG : GTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGCTTTGTAATAGATACAGTTTATTCTATAAGACAAAGATGTATTGGGATTTATACTGATTAGAATGATAAATTGTGGAACTCATGAACAATGTTGTTTTGTGAACATTGTGCATATGTTGATTTCTTCTTCCAGCTT</gDNA_template>
            <first_frame> K  *  S  F  E  G  *  G  Q  T  K  G  L  G  K  G  P  C  K  E  G  S  V  E  W  S  G  E  G  G  F  A  E  *  E  R  S  D  *  C  S  W  K  N  K  R  A  G  K  L  N  S  G  A  E  E  T  E  R  S  *  *  L  E  K  Y  *  Q  G  W  K  *  E  E  K  G  K  R  Y  *  F  G  R  R  E  A  *  E  T  C  Q  V  S  *  *  R  T  R  G  R  G  P  G  Y  *  R  R  R  R  K  G  K  R  S  F  *  L  W  S  S  A  A  Q  E  N  V  A  A  K  R  E  P  H  G  Q  S  R  S  S  F  *  V  A  H  S  *  K  *  R  :  I  S  S :   E  A  *  C  I  C  C  Q  L  Q  S  W  *  V  Y  A  R  T  D  *  I  M  E  G  I  *  I  I  Q  S  R  *  S  I  *  *  L  S  K  *  S  Y  S  R  N  *  D  S  S  *  T  R  I  S  Y  K  S  A   : G  E  R  W  P  T  M  G  N  R  Y  I  H  Q  *  L  G  S  C  R  S :   S  Y  A  H  R  L  L  S  Y  N  C  V  S  S  F  A  Y  Y  Y  G  V  T  C  Y  Y  Q  G  T  T  S  T  K  L :   L  H  I  Y  S  E  E  Q  C  A  I  T  C  V  G  S  C  S  W  L  Q  L  S  Y  *  A  V  L  C  C  E   : E  R  R  W  N  N  R  S  *  T  L  S  N  T  F  L  N  L  G  A  Y  S  C  S  G  G  G  R  A  H  Y  D  H  S  S  C  S  F   : E  C  T  T  T  T  E  V  C  T  *  S  D  N  S  V  Q  L  M  Q  *  A  L  :  A  Q  I  Q  Y  Q  C  C  C  *  Q  G  S  K  K  G  P  F  Y  I  F  T  P  E  E  G  R  S  S  L  L  G  N  S  F  *  E  :  V  *  A  L  F  *  W  *  K  D  G  *  G  Y  N  F  S  D  A  *  N  G  C  *  Q  T  S  K  S  Q  F  T  H  G  K  R  R  K  K  W  S  E  W  *  E  Y  D  G  R  Y  V  P  T  V  S  L  *  E  A  P  A  S  E  T  N  A  I  S  W  N  S  F  A  P  *  T  C  *   : G  F  G  G  E  S  G  V  G  K  H  S  M  V  T  N  W  C  L  D  C  W  K  R  I  S  S  Y  *  S  A  F  S  F  P  K  L  G  N  A  L  *  *  I  Q  F  I  L  *  D  K  D  V  L  G  F  I  L  I  R  M  I  N  C  G  T  H  E  Q  C  C  F  V  N  I  V  H  M  L  I  S  S  S  S   </first_frame>
            <second_frame>  N  D  L  S  K  D  K  D  R  P  K  D  W  E  K  D  H  A  K  R  E  V  W  N  G  V  E  R  E  V  L  Q  S  E  K  E  V  I  D  V  P  G  K  T  N  E  P  E  N  S  T  V  E  Q  K  K  Q  K  D  H  D  N  W  K  N  T  D  R  D  G  S  E  R  R  K  E  R  D  T  D  L  E  G  E  R  P  E  K  R  V  R  C  H  D  K  E  P  E  E  G  D  L  D  T  E  G  G  G  E  R  E  R  E  A  F  N  Y  G  V  Q  Q  R  K  R  M  S  R  P  R  G  S  P  M  A  N  R  D  P  R  F  R  S  H  T  H  E  N  E  G :   S  Q   : V  K  H  D  V  S  A  V  N  Y  R  V  G  E  C  M  P  E  L  I  K  L  W  K  E  Y  E  S  S  K  A  D  E  A  S  D  S  S  P  S  D  P  T  L  E  I  R  I  P  A  E  H  V  S  A  T  N  R  Q  :  V  R  G  G  Q  L  W  G  T  D  I  Y  T  N  D  S  D  L  V  A   : V  L  M  H  T  G  Y  C  R  T  T  A  S  P  L  L  P  T  I  T  E  L  R  A  T  I  R  V  L  P  P  Q  N   : C  Y  I  S  T  L  R  N  N  V  R  S  R  A  W  G  A  A  V  G  C  S  Y  R  I  E  R  C  S  V  V  K  :  K  G  G  G  T  I  D  L  E  P  C  L  T  H  S  S  T  L  E  P  T  L  A  P  V  A  V  E  R  T  M  T  T  R  A  A  A  S  :  N  A  L  R  Q  Q  R  F  V  R  E  V  T  I  Q  F  N  L  C  N  E  P  W :   L  K  Y  S  I  S  V  V  A  D  K  G  L  K  K  A  L  F  T  S  S  R  L  K  K  G  E  V  L  Y  L  E  T  H  S  K  R :   Y  E  L  C  F  S  G  E  K  M  V  K  A  T  T  S  L  M  H  E  M  D  V  D  K  P  Q  S  H  N  L  H  M  A  N  G  E  K  N  G  V  N  G  E  N  T  M  V  D  M  F  R  L  S  R  C  K  K  P  L  P  Q  K  L  M  Q  S  V  G  I  P  L  P  L  E  H  V  E  :  V  L  E  E  N  L  E  W  E  N  I  Q  W  S  Q  T  G  V  W  I  A  G  K  E  Y  P  L  T  R  A  H  F  L  S  P  N  *  A  M  L  C  N  R  Y  S  L  F  Y  K  T  K  M  Y  W  D  L  Y  *  L  E  *  *  I  V  E  L  M  N  N  V  V  L  *  T  L  C  I  C  *  F  L  L  P  A  </second_frame>
            <third_frame>   M  I  F  R  R  I  R  T  D  Q  R  T  G  K  R  T  M  Q  R  G  K  C  G  M  E  W  R  G  R  F  C  R  V  R  K  K  *  L  M  F  L  E  K  Q  T  S  R  K  T  Q  Q  W  S  R  R  N  R  K  I  M  I  T  G  K  I  L  T  G  M  E  V  R  G  E  R  K  E  I  L  I  W  K  E  R  G  L  R  N  V  S  G  V  M  I  K  N  Q  R  K  G  T  W  I  L  K  E  E  E  K  G  K  E  K  L  L  I  M  E  F  S  S  A  R  E  C  R  G  Q  E  G  A  P  W  P  I  A  I  L  V  L  G  R  T  L  M  K  M  K   : D  L  K  :  *  S  M  M  Y  L  L  S  I  T  E  L  V  S  V  C  Q  N  *  L  N  Y  G  R  N  M  N  H  P  K  Q  M  K  H  L  I  A  L  Q  V  I  L  L  *  K  L  G  F  Q  L  N  T  Y  Q  L  Q  I  G  R :   *  E  V  A  N  Y  G  E  Q  I  Y  T  P  M  T  R  I  L  S  Q  :  F  L  C  T  Q  V  T  V  V  Q  L  R  L  L  F  C  L  L  L  R  S  Y  V  L  L  S  G  Y  Y  L  H  K  I  :  A  T  Y  L  L  *  G  T  M  C  D  H  V  R  G  E  L  Q  L  A  A  A  I  V  L  S  G  A  L  L  *  R :   K  E  V  E  Q  S  I  L  N  L  V  *  H  I  P  Q  P  W  S  L  L  L  L  R  W  R  *  S  A  L  *  P  L  E  L  Q  L  R :   M  H  Y  D  N  R  G  L  Y  V  K  *  Q  F  S  S  T  Y  A  M  S  L   : G  S  N  T  V  S  V  L  L  L  T  R  V  *  K  R  P  F  L  H  L  H  A  *  R  R  E  K  F  F  T  W  K  L  I  L  R   : G  M  S  S  V  L  V  V  K  R  W  L  R  L  Q  L  L  *  C  M  K  W  M  L  T  N  L  K  V  T  I  Y  T  W  Q  T  E  K  K  M  E  *  M  V  R  I  R  W  *  I  C  S  D  C  L  V  V  R  S  P  C  L  R  N  *  C  N  Q  L  E  F  L  C  P  L  N  M  L  R :   F  W  R  R  I  W  S  G  K  T  F  N  G  H  K  L  V  F  G  L  L  E  K  N  I  L  L  L  E  R  I  F  F  P  Q  I  R  Q  C  F  V  I  D  T  V  Y  S  I  R  Q  R  C  I  G  I  Y  T  D  *  N  D  K  L  W  N  S  *  T  M  L  F  C  E  H  C  A  Y  V  D  F  F  F  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80158" stop="79713"/>
                    <exon start="78275" stop="78268"/>
                    <exon start="75451" stop="75276"/>
                    <exon start="73522" stop="73462"/>
                    <exon start="72241" stop="72143"/>
                    <exon start="71301" stop="71207"/>
                    <exon start="70494" stop="70381"/>
                    <exon start="69402" stop="69335"/>
                    <exon start="68391" stop="68281"/>
                    <exon start="68038" stop="67804"/>
                    <exon start="67612" stop="67502"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1521</number_coding_nucleotides>
                  <number_encoded_amino_acids>507</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDLSKDKDRPKDWEKDHAKREVWNGVEREVLQSEKEVIDVPGKTNEPENSTVEQKKQKDHDNWKNTDRDGSERRKERDTDLEGERPEKRVRCHDKEPEEGDLDTEGGGEREREAFNYGVQQRKRMSRPRGSPMANRDPRFRSHTHENEGSQVKHDVSAVNYRVGECMPELIKLWKEYESSKADEASDSSPSDPTLEIRIPAEHVSATNRQVRGGQLWGTDIYTNDSDLVAVLMHTGYCRTTASPLLPTITELRATIRVLPPQNCYISTLRNNVRSRAWGAAVGCSYRIERCSVVKKGGGTIDLEPCLTHSSTLEPTLAPVAVERTMTTRAAASNALRQQRFVREVTIQFNLCNEPWLKYSISVVADKGLKKALFTSSRLKKGEVLYLETHSKRYELCFSGEKMVKATTSLMHEMDVDKPQSHNLHMANGEKNGVNGENTMVDMFRLSRCKKPLPQKLMQSVGIPLPLEHVEVLEENLEWENIQWSQTGVWIAGKEYPLTRAHFLSPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="82195" PGL_stop="80810"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82195" e_stop="82155"/>
            <exon e_start="81097" e_stop="80810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.807" acc_prob="0.845" e_score="0.976"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="82195" e_stop="82155" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.807" acc_prob="0.845">
            <gDNA_intron_boundary i_start="82154" i_stop="81098" i_length="1057"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="81097" e_stop="80810" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82195" stop="82155"/>
              <exon start="81097" stop="80810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346218" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATTTTTTCGCTCCTTCTTTTGCTGCATCTTCGCCGCCG : GTTGTGGTTCTTTAGGTTCCTTAATTTATATGCTGAAAAAGCCAGAATATGAGTGGTACTCCGAACAAAAGACCTCACGAGGATGGTGGAAATGGTGGGAGTAGTAACCATAGTTACTCTTCTGCTCCAAAATACTCACATGATGACTCTGGTGCATTTCCCAAGGTGATGAGCTCAGGAACACCTGAATATCATGCCTCCTTTGATGTGGGCCAGAATGCTCGGATGCCGAAGATTCAACGGACTGAATCTTCACGAGATGCAGATAGAAGATCTCCTGTGCTTCCA</gDNA_template>
            <first_frame> *  I  F  S  L  L  L  L  L  H  L  R  R  R :   L  W  F  F  R  F  L  N  L  Y  A  E  K  A  R  I  *  V  V  L  R  T  K  D  L  T  R  M  V  E  M  V  G  V  V  T  I  V  T  L  L  L  Q  N  T  H  M  M  T  L  V  H  F  P  R  *  *  A  Q  E  H  L  N  I  M  P  P  L  M  W  A  R  M  L  G  C  R  R  F  N  G  L  N  L  H  E  M  Q  I  E  D  L  L  C  F   </first_frame>
            <second_frame>  E  F  F  R  S  F  F  C  C  I  F  A  A   : G  C  G  S  L  G  S  L  I  Y  M  L  K  K  P  E  Y  E  W  Y  S  E  Q  K  T  S  R  G  W  W  K  W  W  E  *  *  P  *  L  L  F  C  S  K  I  L  T  *  *  L  W  C  I  S  Q  G  D  E  L  R  N  T  *  I  S  C  L  L  *  C  G  P  E  C  S  D  A  E  D  S  T  D  *  I  F  T  R  C  R  *  K  I  S  C  A  S  </second_frame>
            <third_frame>   N  F  F  A  P  S  F  A  A  S  S  P  P  :  V  V  V  L  *  V  P  *  F  I  C  *  K  S  Q  N  M  S  G  T  P  N  K  R  P  H  E  D  G  G  N  G  G  S  S  N  H  S  Y  S  S  A  P  K  Y  S  H  D  D  S  G  A  F  P  K  V  M  S  S  G  T  P  E  Y  H  A  S  F  D  V  G  Q  N  A  R  M  P  K  I  Q  R  T  E  S  S  R  D  A  D  R  R  S  P  V  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81061" stop="80810"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSQNMSGTPNKRPHEDGGNGGSSNHSYSSAPKYSHDDSGAFPKVMSSGTPEYHASFDVGQNARMPKIQRTESSRDADRRSPVLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="87807" PGL_stop="90489"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87807" e_stop="87831"/>
            <exon e_start="87912" e_stop="88102"/>
            <exon e_start="88606" e_stop="88825"/>
            <exon e_start="89118" e_stop="89285"/>
            <exon e_start="89950" e_stop="90489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.913" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.578" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87807" e_stop="87831" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.913" acc_prob="0.873">
            <gDNA_intron_boundary i_start="87832" i_stop="87911" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87912" e_stop="88102" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.943">
            <gDNA_intron_boundary i_start="88103" i_stop="88605" i_length="503"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88606" e_stop="88825" e_length="220"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.927">
            <gDNA_intron_boundary i_start="88826" i_stop="89117" i_length="292"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89118" e_stop="89285" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.578">
            <gDNA_intron_boundary i_start="89286" i_stop="89949" i_length="664"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="89950" e_stop="90489" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87807" stop="87831"/>
              <exon start="87912" stop="88102"/>
              <exon start="88606" stop="88825"/>
              <exon start="89118" stop="89285"/>
              <exon start="89950" stop="90489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324443" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATTTCCTGGCATTCAAGAATG : ATATTCAATTTTGGAATAAAAACAAGTCCATGGAAGGGCTATCTGCAAAATCAGTGGTCGTGAACTTTTTCTGCCAGTTTATTGTCTTCCTGTATTTGCTTGATAATGATACTTCATGGATGATACTTGCAAGTTCTGGTGTTGGTTGTTGCATTGAGTTCTGGAAAATAGGGAAGGCCATGCACATTGAG : ATTGACAGATCTGGTAGAATACCCATGTTGAGGTTCCGAGATCGGGAATCATATGCTGGAAATAAGACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCACAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGTTTATATGTTTG : GTTTTGTTATGATGTGTCCACAGTTGTTCATCAATTATAAACTGAAGTCTGTTGCTCATTTACCTTGGAGGCAAATGACCTACAAATTTCTTAATACCATCATTGATGATTTGTTTGCATTTGTGATAAAAATGCCAATGCTTCATCGCCTGTCTGTGTTCCGTGATG : ATCTTATATTTTTGATATACCTATATCAGAGATGGGTTTATCCAGTAGATAAGAAACGGGTGAATGAGTTTGGTTTTGCTGCGGAAGATGTGGATCAAGCTGCCAGTAGTTCAGATACTCCCGCACTTAAAGAAGACGAGAAGAAAACTAACTAATCTAAATCTCTCACTTAGGCTTCAGTACAACATACTTCTTGTTTTGGATGAACTCAACACCTGCAACGATGATGAGTTGCTTCAGGACGTTTAGTAATTTCTCAGGATCTTTGGTTACAATATTCAGATTCGAGTAACTTAATCGAGAATTGGAAATGACAACAGCGGCCTGAGAGGGGAACTCTGGTACTTTCAGATGTCAATCACCTCTTCGTCACGTTTCTTAAGTTCCCATTTCTCAAGTCTTTTTGTAGCTATAAATACCAGATTCTATCTACATAGGTTTTCTGGATTTCTTTTCTATTTTGTTCCTGTTAGAATCAAATGTTTGTGTGATAGTGAAACTACAATGACTGCTGTTAGAAATGCACCAATATGGTTTCTT</gDNA_template>
            <first_frame> F  D  F  L  A  F  K  N   : D  I  Q  F  W  N  K  N  K  S  M  E  G  L  S  A  K  S  V  V  V  N  F  F  C  Q  F  I  V  F  L  Y  L  L  D  N  D  T  S  W  M  I  L  A  S  S  G  V  G  C  C  I  E  F  W  K  I  G  K  A  M  H  I  E  :  I  D  R  S  G  R  I  P  M  L  R  F  R  D  R  E  S  Y  A  G  N  K  T  K  E  Y  D  D  L  A  M  K  Y  L  S  Y  V  L  F  F  L  A  V  C  F  A  I  Y  S  L  M  Y  D  R  H  K  S  W  Y  S  W  I  L  S  S  L  T  S  C  V  Y  M  F   : G  F  V  M  M  C  P  Q  L  F  I  N  Y  K  L  K  S  V  A  H  L  P  W  R  Q  M  T  Y  K  F  L  N  T  I  I  D  D  L  F  A  F  V  I  K  M  P  M  L  H  R  L  S  V  F  R  D   : D  L  I  F  L  I  Y  L  Y  Q  R  W  V  Y  P  V  D  K  K  R  V  N  E  F  G  F  A  A  E  D  V  D  Q  A  A  S  S  S  D  T  P  A  L  K  E  D  E  K  K  T  N  *  S  K  S  L  T  *  A  S  V  Q  H  T  S  C  F  G  *  T  Q  H  L  Q  R  *  *  V  A  S  G  R  L  V  I  S  Q  D  L  W  L  Q  Y  S  D  S  S  N  L  I  E  N  W  K  *  Q  Q  R  P  E  R  G  T  L  V  L  S  D  V  N  H  L  F  V  T  F  L  K  F  P  F  L  K  S  F  C  S  Y  K  Y  Q  I  L  S  T  *  V  F  W  I  S  F  L  F  C  S  C  *  N  Q  M  F  V  *  *  *  N  Y  N  D  C  C  *  K  C  T  N  M  V  S  </first_frame>
            <second_frame>  L  I  S  W  H  S  R  M  :  I  F  N  F  G  I  K  T  S  P  W  K  G  Y  L  Q  N  Q  W  S  *  T  F  S  A  S  L  L  S  S  C  I  C  L  I  M  I  L  H  G  *  Y  L  Q  V  L  V  L  V  V  A  L  S  S  G  K  *  G  R  P  C  T  L  R :   L  T  D  L  V  E  Y  P  C  *  G  S  E  I  G  N  H  M  L  E  I  R  L  K  N  M  M  I  L  P  *  N  I  C  L  M  C  C  S  S  L  P  C  A  L  P  Y  T  L  *  C  M  T  A  T  R  V  G  I  H  G  S  S  H  P  *  Q  A  V  F  I  C  L  :  V  L  L  *  C  V  H  S  C  S  S  I  I  N  *  S  L  L  L  I  Y  L  G  G  K  *  P  T  N  F  L  I  P  S  L  M  I  C  L  H  L  *  *  K  C  Q  C  F  I  A  C  L  C  S  V  M  :  I  L  Y  F  *  Y  T  Y  I  R  D  G  F  I  Q  *  I  R  N  G  *  M  S  L  V  L  L  R  K  M  W  I  K  L  P  V  V  Q  I  L  P  H  L  K  K  T  R  R  K  L  T  N  L  N  L  S  L  R  L  Q  Y  N  I  L  L  V  L  D  E  L  N  T  C  N  D  D  E  L  L  Q  D  V  *  *  F  L  R  I  F  G  Y  N  I  Q  I  R  V  T  *  S  R  I  G  N  D  N  S  G  L  R  G  E  L  W  Y  F  Q  M  S  I  T  S  S  S  R  F  L  S  S  H  F  S  S  L  F  V  A  I  N  T  R  F  Y  L  H  R  F  S  G  F  L  F  Y  F  V  P  V  R  I  K  C  L  C  D  S  E  T  T  M  T  A  V  R  N  A  P  I  W  F  L </second_frame>
            <third_frame>   *  F  P  G  I  Q  E  * :   Y  S  I  L  E  *  K  Q  V  H  G  R  A  I  C  K  I  S  G  R  E  L  F  L  P  V  Y  C  L  P  V  F  A  *  *  *  Y  F  M  D  D  T  C  K  F  W  C  W  L  L  H  *  V  L  E  N  R  E  G  H  A  H  *   : D  *  Q  I  W  *  N  T  H  V  E  V  P  R  S  G  I  I  C  W  K  *  D  *  R  I  *  *  S  C  H  E  I  F  V  L  C  A  V  L  P  C  R  V  L  C  H  I  L  S  N  V  *  P  P  Q  E  L  V  F  M  D  P  L  I  P  D  K  L  C  L  Y  V  W :   F  C  Y  D  V  S  T  V  V  H  Q  L  *  T  E  V  C  C  S  F  T  L  E  A  N  D  L  Q  I  S  *  Y  H  H  *  *  F  V  C  I  C  D  K  N  A  N  A  S  S  P  V  C  V  P  *  * :   S  Y  I  F  D  I  P  I  S  E  M  G  L  S  S  R  *  E  T  G  E  *  V  W  F  C  C  G  R  C  G  S  S  C  Q  *  F  R  Y  S  R  T  *  R  R  R  E  E  N  *  L  I  *  I  S  H  L  G  F  S  T  T  Y  F  L  F  W  M  N  S  T  P  A  T  M  M  S  C  F  R  T  F  S  N  F  S  G  S  L  V  T  I  F  R  F  E  *  L  N  R  E  L  E  M  T  T  A  A  *  E  G  N  S  G  T  F  R  C  Q  S  P  L  R  H  V  S  *  V  P  I  S  Q  V  F  L  *  L  *  I  P  D  S  I  Y  I  G  F  L  D  F  F  S  I  L  F  L  L  E  S  N  V  C  V  I  V  K  L  Q  *  L  L  L  E  M  H  Q  Y  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87807" stop="87831"/>
                    <exon start="87912" stop="88102"/>
                    <exon start="88606" stop="88825"/>
                    <exon start="89118" stop="89285"/>
                    <exon start="89950" stop="90104"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDFLAFKNDIQFWNKNKSMEGLSAKSVVVNFFCQFIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIEIDRSGRIPMLRFRDRESYAGNKTKEYDDLAMKYLSYVLFFLAVCFAIYSLMYDRHKSWYSWILSSLTSCVYMFGFVMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPMLHRLSVFRDDLIFLIYLYQRWVYPVDKKRVNEFGFAAEDVDQAASSSDTPALKEDEKKTN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90247" stop="90489"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRIGNDNSGLRGELWYFQMSITSSSRFLSSHFSSLFVAINTRFYLHRFSGFLFYFVPVRIKCLCDSETTMTAVRNAPIWFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="93620" PGL_stop="94140"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93620" e_stop="94140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93620" e_stop="94140" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93620" stop="94140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCCCCACCCCCACCCCCTCTGTATTTGTGGTATATAGTTTACATACATACATAAACGGTGACATTGTCTACTTGTTTCTTGAGAAAGTTCTTTTTTTTTCCATCCTCTCTTGTTGTATCTATGGCTGCACTGAATCCTAATGCAGAAGAGTTTAAACCAACTAATAATGAAAAAGAAGTAGTCCCTTTTAATCCACAAGGCAATGAACTTGTTGTATATCAGCCACCATTACTGCCATTTCATGTTTCACAGCCTCAATGTCATCACTTGGGTTATTTCTACTACTATCAACAAAATGTTCCCTTTTATTGGATTCACGATGATCTTTATCATCAACTTGAAAATACACCTCAAACTCAGTCATTTCTTGCAAAAGGTGAGATCTTTAGTGATGGGGTGAAGGAGAAGTGGGTGTGGGTTGAGAAAACTCATCAAGATCAGTCTTTTGTTGATAAAGATGAAATCTTTAGTGATGGGATGAACAAAAATTGGAAAAACAAGAAACCCTTTTTGCCACCT</gDNA_template>
            <first_frame> H  P  H  P  H  P  L  C  I  C  G  I  *  F  T  Y  I  H  K  R  *  H  C  L  L  V  S  *  E  S  S  F  F  F  H  P  L  L  L  Y  L  W  L  H  *  I  L  M  Q  K  S  L  N  Q  L  I  M  K  K  K  *  S  L  L  I  H  K  A  M  N  L  L  Y  I  S  H  H  Y  C  H  F  M  F  H  S  L  N  V  I  T  W  V  I  S  T  T  I  N  K  M  F  P  F  I  G  F  T  M  I  F  I  I  N  L  K  I  H  L  K  L  S  H  F  L  Q  K  V  R  S  L  V  M  G  *  R  R  S  G  C  G  L  R  K  L  I  K  I  S  L  L  L  I  K  M  K  S  L  V  M  G  *  T  K  I  G  K  T  R  N  P  F  C  H   </first_frame>
            <second_frame>  T  P  T  P  T  P  S  V  F  V  V  Y  S  L  H  T  Y  I  N  G  D  I  V  Y  L  F  L  E  K  V  L  F  F  S  I  L  S  C  C  I  Y  G  C  T  E  S  *  C  R  R  V  *  T  N  *  *  *  K  R  S  S  P  F  *  S  T  R  Q  *  T  C  C  I  S  A  T  I  T  A  I  S  C  F  T  A  S  M  S  S  L  G  L  F  L  L  L  S  T  K  C  S  L  L  L  D  S  R  *  S  L  S  S  T  *  K  Y  T  S  N  S  V  I  S  C  K  R  *  D  L  *  *  W  G  E  G  E  V  G  V  G  *  E  N  S  S  R  S  V  F  C  *  *  R  *  N  L  *  *  W  D  E  Q  K  L  E  K  Q  E  T  L  F  A  T  </second_frame>
            <third_frame>   P  P  P  P  P  P  L  Y  L  W  Y  I  V  Y  I  H  T  *  T  V  T  L  S  T  C  F  L  R  K  F  F  F  F  P  S  S  L  V  V  S  M  A  A  L  N  P  N  A  E  E  F  K  P  T  N  N  E  K  E  V  V  P  F  N  P  Q  G  N  E  L  V  V  Y  Q  P  P  L  L  P  F  H  V  S  Q  P  Q  C  H  H  L  G  Y  F  Y  Y  Y  Q  Q  N  V  P  F  Y  W  I  H  D  D  L  Y  H  Q  L  E  N  T  P  Q  T  Q  S  F  L  A  K  G  E  I  F  S  D  G  V  K  E  K  W  V  W  V  E  K  T  H  Q  D  Q  S  F  V  D  K  D  E  I  F  S  D  G  M  N  K  N  W  K  N  K  K  P  F  L  P  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93676" stop="94140"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVTLSTCFLRKFFFFPSSLVVSMAALNPNAEEFKPTNNEKEVVPFNPQGNELVVYQPPLLPFHVSQPQCHHLGYFYYYQQNVPFYWIHDDLYHQLENTPQTQSFLAKGEIFSDGVKEKWVWVEKTHQDQSFVDKDEIFSDGMNKNWKNKKPFLPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 18 chains have been computed
$ 
$ memory statistics:
$ 205632 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 12852 bytes was the average size of a spliced alignment
$ 19472 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1770 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 19 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:35:10
-->
