<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:27:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398513" ref_strand="+" ref_description="SGN-E398513 [TUS-17-L12]">
      <seq>aaactttattgtgtcaacagggctgtgcccactctaccgattaatattgaggatgctgctagaagcgaggtggagatagaacaagctttagagaaaggagagcagcttgttcgtgtaaatcaggatactcgcttaaacttcagaatactagacatgcgcacacctgcaaatcaaggaatcttccgcattcaatgtcaaatcgaaaatatattcaggcagtttttgctctctgaaggatttgtaggaatccatactccaaaattgattggagggtctagtgaaggaggttcagctgttttccgattagattataaaggtcaacctgcatgtctggcgcagtcacctcaacttcacaaacaaatggcaatatgtggtgattttggccgtgtatttgaagtaggccccgtctttagggcagaagattcttttacacatagacatctgtgcgagtttacaggtcttgatgttgaaatggagatcaaggaacattattcagaggtcatggatattgttgaccgcttatttgtggccatgtttgatagcttgaatgagaaatgcaaaaaggaacttgaagccgttggaaagcaatacccttttgaacctctgaagtatttgcgaaagaccttacgacttacatttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="2362" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2062" g_stop="1970" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1969" i_stop="1758" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1757" g_stop="1644" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="207" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1643" i_stop="835" i_length="809">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="834" g_stop="544" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="498" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="543" i_stop="442" i_length="102">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="441" g_stop="331" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="609" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="330" i_stop="113" i_length="218">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112" g_stop="78" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="644" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E398513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2062" e_stop="1970"/>
          <exon e_start="1757" e_stop="1644"/>
          <exon e_start="834" e_stop="544"/>
          <exon e_start="441" e_stop="331"/>
          <exon e_start="112" e_stop="78"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAGGTATATTCTTTTCTCTTCTCGAATTGGTTCATTGCTTTAATGAAATTTTAACATTGTAATTGGTTGACAATATATTTCAAGGGAAGTCATCAGCATTTCGCAGTTACCTTTTCAAAAATTGAGATTCCAGTAAATTTCAAAAACTGGACTAATGCTGTGTATGTTTTTTCTATCCTTTTGATCGTCTGCTGACATCTTTCTATCAAGTGCAGAAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAATGTTCGTTGTACTACCCGATATTTCCATTTCACCTATTTACTGTTTATTGCAAAATATGTTTTGTATTCTGTTTGGAGAAGAGAGAAGACTGTTGAGAAATTAGTTGTGCGAGTGAGAATTTTGAATAAGTACTGCATTGCCTGAAATACAGGGACCTATATAGTTTGTTACAAACAAGATACAGTGAACTCTTTGGGGAATTTCTTGTACTTTCTGTAATCCCTGAGAATGTAGCTTCTATGCCATTACACCACCTACTCGGTGCTATAAAAATATTGAATATAAACTTCTCATTTATCCAAAAACAAAATTTATAGTGACGTTATTACAACAAGTCTTTAAGTTTAATGTTAGCTAACACCCAAGTGTATCCAACTGCATTTATTTGAATTACTTGATTTTGTGTTTGCTTTAATTTTCATCTTCTTTACAGACTGCATTATGCTTGTTCTGAATTGTCATTTCATGAGGATTTAAGATTCAAAACCGGTAGTTTCATTTTTTCTTGAGATGTAGCCACAAAGATATATGGTAATCTTTTACCAATCTCTATCCACCGCACAATGGAATTAGTATCACAGTTTATAGACATGGTGCCTTGGTGCATATTCCCTTGCTTGCACATTTTCACAATATCATATTCTTATTCTTACTATATTTTTAATGTACAAGTGATTCAGCTTGTGCTTCTAGTCACTTTCTGGTGATAGTATAACAAAAAGAAAGAAGTTACGAGATTGTTCCCTACATTTCTATTGAGTACTTGCAAACTATAAATGATGAGCTAATTTTCTACGGTTAAAATGCAGATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTCTAGTGAAGGAGGTTCAGCTGTTTTCCGATTAGATTATAAAGGTCAACCTGCATGTCTGGCGCAGTCACCTCAACTTCACAAACAAATGGCAATATGTGGTGATTTTGGCCGTGTATTTGAAGTAGGCCCCGTCTTTAGGGCAGAAGATTCTTTTACACATAGACATCTGTGCGAGTTTACAGGTCTTGATGTTGAAATGGAGATCAAGGAACATTATTCAGAGGTATGGCATGCTAGAGCCTCTTAAAAACTGCTTCTGCAAGTACAATATAAAGTGTGAGTGTGCTTTTACTTGGATATTACAATATGAAGTATACTTTTGCAGGTCATGGATATTGTTGACCGCTTATTTGTGGCCATGTTTGATAGCTTGAATGAGAAATGCAAAAAGGAACTTGAAGCCGTTGGAAAGCAATACCCTTTTGAACCTCTGAAGGTAATTAGGCTCCACTTCGGTGATCAGTATGCTACCTATGATTGCTTAACCTCCACGGATTGACTTGCTCTTTTACACATTCATATGCTTACTCTTGGAAAATGGGAAACCTTATTGCTTGTGGCAATGACTTATATAGCCATGAGAAAATTACTTAAATAGCAACTTGTATCTTTTTTCTGCAGAGGTAGTAACTATTTGTTTTATTGACAATGCAGTATTTGCGAAAGACCTTACGACTTACATTTGCTGA</genome_strand>
        <mrna_strand>AAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAG....................................................................................................................................................................................................................AAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTCTAGTGAAGGAGGTTCAGCTGTTTTCCGATTAGATTATAAAGGTCAACCTGCATGTCTGGCGCAGTCACCTCAACTTCACAAACAAATGGCAATATGTGGTGATTTTGGCCGTGTATTTGAAGTAGGCCCCGTCTTTAGGGCAGAAGATTCTTTTACACATAGACATCTGTGCGAGTTTACAGGTCTTGATGTTGAAATGGAGATCAAGGAACATTATTCAGAG......................................................................................................GTCATGGATATTGTTGACCGCTTATTTGTGGCCATGTTTGATAGCTTGAATGAGAAATGCAAAAAGGAACTTGAAGCCGTTGGAAAGCAATACCCTTTTGAACCTCTGAAG..........................................................................................................................................................................................................................TATTTGCGAAAGACCTTACGACTTACATTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208230" ref_strand="+" ref_description="SGN-E208230 [cLEC-37-B13]">
      <seq>aactttattgtgtcaacagggctgtgcccactctaccgattaatattgaggatgctgctagaagcgaggtggagatagaacaagctttagagaaaggagagcagcttgttcgtgtaaatcaggatactcgcttaaacttcagaatactagacatgcgcacacctgcaaatcaaggaatcttccgcattcaatgtcaaatcgaaaatatattcaggcagtttttgctctctgaaggatttgtaggaatccatactccaaaattgattggagggtctagtgaaggaggttcagctgttttccgattagattataaaggtcaacctgcatgtctggcgcagtcacctcaacttcacaaacaaatggcaatctgtggtgattttggccgtgtatttgaagtaggccccgtcttttgggcagaatattcttttacacatagacatctgtgcgagtttacaggtcttgatgttgaaatggagatcaaggaacattattcaaaggtcatggatattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="2361" stop="235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2061" g_stop="1970" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1969" i_stop="1758" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1757" g_stop="1644" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="206" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1643" i_stop="835" i_length="809">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="834" g_stop="544" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="497" r_length="291" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="543" i_stop="442" i_length="102">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="441" g_stop="428" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="511" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E208230" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2061" e_stop="1970"/>
          <exon e_start="1757" e_stop="1644"/>
          <exon e_start="834" e_stop="544"/>
          <exon e_start="441" e_stop="428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAGGTATATTCTTTTCTCTTCTCGAATTGGTTCATTGCTTTAATGAAATTTTAACATTGTAATTGGTTGACAATATATTTCAAGGGAAGTCATCAGCATTTCGCAGTTACCTTTTCAAAAATTGAGATTCCAGTAAATTTCAAAAACTGGACTAATGCTGTGTATGTTTTTTCTATCCTTTTGATCGTCTGCTGACATCTTTCTATCAAGTGCAGAAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAATGTTCGTTGTACTACCCGATATTTCCATTTCACCTATTTACTGTTTATTGCAAAATATGTTTTGTATTCTGTTTGGAGAAGAGAGAAGACTGTTGAGAAATTAGTTGTGCGAGTGAGAATTTTGAATAAGTACTGCATTGCCTGAAATACAGGGACCTATATAGTTTGTTACAAACAAGATACAGTGAACTCTTTGGGGAATTTCTTGTACTTTCTGTAATCCCTGAGAATGTAGCTTCTATGCCATTACACCACCTACTCGGTGCTATAAAAATATTGAATATAAACTTCTCATTTATCCAAAAACAAAATTTATAGTGACGTTATTACAACAAGTCTTTAAGTTTAATGTTAGCTAACACCCAAGTGTATCCAACTGCATTTATTTGAATTACTTGATTTTGTGTTTGCTTTAATTTTCATCTTCTTTACAGACTGCATTATGCTTGTTCTGAATTGTCATTTCATGAGGATTTAAGATTCAAAACCGGTAGTTTCATTTTTTCTTGAGATGTAGCCACAAAGATATATGGTAATCTTTTACCAATCTCTATCCACCGCACAATGGAATTAGTATCACAGTTTATAGACATGGTGCCTTGGTGCATATTCCCTTGCTTGCACATTTTCACAATATCATATTCTTATTCTTACTATATTTTTAATGTACAAGTGATTCAGCTTGTGCTTCTAGTCACTTTCTGGTGATAGTATAACAAAAAGAAAGAAGTTACGAGATTGTTCCCTACATTTCTATTGAGTACTTGCAAACTATAAATGATGAGCTAATTTTCTACGGTTAAAATGCAGATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTCTAGTGAAGGAGGTTCAGCTGTTTTCCGATTAGATTATAAAGGTCAACCTGCATGTCTGGCGCAGTCACCTCAACTTCACAAACAAATGGCAATATGTGGTGATTTTGGCCGTGTATTTGAAGTAGGCCCCGTCTTTAGGGCAGAAGATTCTTTTACACATAGACATCTGTGCGAGTTTACAGGTCTTGATGTTGAAATGGAGATCAAGGAACATTATTCAGAGGTATGGCATGCTAGAGCCTCTTAAAAACTGCTTCTGCAAGTACAATATAAAGTGTGAGTGTGCTTTTACTTGGATATTACAATATGAAGTATACTTTTGCAGGTCATGGATATTGT</genome_strand>
        <mrna_strand>AACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAG....................................................................................................................................................................................................................AAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTCTAGTGAAGGAGGTTCAGCTGTTTTCCGATTAGATTATAAAGGTCAACCTGCATGTCTGGCGCAGTCACCTCAACTTCACAAACAAATGGCAATCTGTGGTGATTTTGGCCGTGTATTTGAAGTAGGCCCCGTCTTTTGGGCAGAATATTCTTTTACACATAGACATCTGTGCGAGTTTACAGGTCTTGATGTTGAAATGGAGATCAAGGAACATTATTCAAAG......................................................................................................GTCATGGATATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342215" ref_strand="+" ref_description="SGN-E342215 [cTOF-10-N20]">
      <seq>ccagaaatgaaggaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagatagcttttgtggttgtgagggaacgaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaataccagagaagccaattactggtgccactcaacaacaggtggaagttcaaataagcaaactttattgtgtcaacagggctgtgcccactctaccgattaatattgaggatgctgctagaagcgaggtggagatagaacaagctttagagaaaggagagcagcttgttcgtgtaaatcaggatactcgcttaaacttcagaatactagacatgcgcacacctgcaaatcaaggaatcttccgcattcaatgtcaaatcgaaaatatattcaggcagtttttgctctctgaaggatttgtaggaatccatactccaaaattgattggagggtctagtgaaggaggttcagctgttttccgattagattataaaggtcaacctgcatgtctggcgcagtcacctcaacttcacaaacaaatggcaatatgtggtgattttggccgtgtatttgaagtangccccgtctttagggcagaagattcttttacacatagacatctgtgcgagtttacaggtctttgatgttgaaatggagatcaaggaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3575" stop="252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3275" g_stop="3024" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3023" i_stop="2081" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2080" g_stop="1970" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="363" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1969" i_stop="1758" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1757" g_stop="1644" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="477" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1643" i_stop="835" i_length="809">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="834" g_stop="552" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="761" r_length="284" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E342215" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3275" e_stop="3024"/>
          <exon e_start="2080" e_stop="1970"/>
          <exon e_start="1757" e_stop="1644"/>
          <exon e_start="834" e_stop="552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAGGTAGATTTATTTCAAAAAGGTTATTGCTTTATGCTTTTATAGTTCTTCTTGATACACTTAAGTCATATAATATTAGGCCAATTCTCAATGAAACTAAGTTGGTGTCACTTATATTAATCTTTTAAAAAGTTTTTTTTTAGATTGAGTCCTCAATTTTCCATTCCACTGGACCTGGTTCATTTCTATGCTCCCTAAATCATCTTTCAAACTCCCGTTTGGCCATGATTTTGAAGTTGAAAGTAAAAGCCTGCAAATTTGAGTTTTTGGGAACATGAAGTTGTGTTTGGACATGCATTTTACTTGGAAGTTTTGTGTAGAAGTCCCAAAAACCAAAATTTGTTTGATCCAGCTCTTGGGAACTTGAAAATATTTAAGTTCAGATTTTGAATTTCATGCCAAATAGATATTTGAAGAGAACTTTTCAAAATGTATGACCAAAGTCTAGCTAAGGATCGGGAGTAAGAGATATCCTAAGTTCACAGGCAAAATATTTATGTATATTTAGTGGATTTTTTAATGCAAATGCTGTTGGGTTCACGTGAACCCGTAGGTTAAAGGCTAGATTAGCCAATGTATATGGCTCCTTAATATCCATTTGCTCCATTTGGACCACTAATTCCAAACAGTAACAACTATGCCAAAATTCCAAATAAGTTGAGTTTGGCTATATGAATCGTGCGAATAATTTGTCATTTAAGACAACTTTAGGGTTCATATTACCAGAGCTTTTCTACATTTTAGTCTGACAAGTACCTCTTTCAACAAAACAAAATGATTCATGGAAAATGAGAATAAACAAGAGAAGATGAATAGTGGAGTTGCCTTATTATATGATAAGCCTGATCTAAATGGTGCAGAAGAATCTTTGAAATCTTGTATATGCTGATTATTTTGTTGTTTTTGGTAGTTACTAGTACTTATTAGTCTTTTTTATTTGCTTCAGGTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAGGTATATTCTTTTCTCTTCTCGAATTGGTTCATTGCTTTAATGAAATTTTAACATTGTAATTGGTTGACAATATATTTCAAGGGAAGTCATCAGCATTTCGCAGTTACCTTTTCAAAAATTGAGATTCCAGTAAATTTCAAAAACTGGACTAATGCTGTGTATGTTTTTTCTATCCTTTTGATCGTCTGCTGACATCTTTCTATCAAGTGCAGAAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAATGTTCGTTGTACTACCCGATATTTCCATTTCACCTATTTACTGTTTATTGCAAAATATGTTTTGTATTCTGTTTGGAGAAGAGAGAAGACTGTTGAGAAATTAGTTGTGCGAGTGAGAATTTTGAATAAGTACTGCATTGCCTGAAATACAGGGACCTATATAGTTTGTTACAAACAAGATACAGTGAACTCTTTGGGGAATTTCTTGTACTTTCTGTAATCCCTGAGAATGTAGCTTCTATGCCATTACACCACCTACTCGGTGCTATAAAAATATTGAATATAAACTTCTCATTTATCCAAAAACAAAATTTATAGTGACGTTATTACAACAAGTCTTTAAGTTTAATGTTAGCTAACACCCAAGTGTATCCAACTGCATTTATTTGAATTACTTGATTTTGTGTTTGCTTTAATTTTCATCTTCTTTACAGACTGCATTATGCTTGTTCTGAATTGTCATTTCATGAGGATTTAAGATTCAAAACCGGTAGTTTCATTTTTTCTTGAGATGTAGCCACAAAGATATATGGTAATCTTTTACCAATCTCTATCCACCGCACAATGGAATTAGTATCACAGTTTATAGACATGGTGCCTTGGTGCATATTCCCTTGCTTGCACATTTTCACAATATCATATTCTTATTCTTACTATATTTTTAATGTACAAGTGATTCAGCTTGTGCTTCTAGTCACTTTCTGGTGATAGTATAACAAAAAGAAAGAAGTTACGAGATTGTTCCCTACATTTCTATTGAGTACTTGCAAACTATAAATGATGAGCTAATTTTCTACGGTTAAAATGCAGATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTCTAGTGAAGGAGGTTCAGCTGTTTTCCGATTAGATTATAAAGGTCAACCTGCATGTCTGGCGCAGTCACCTCAACTTCACAAACAAATGGCAATATGTGGTGATTTTGGCCGTGTATTTGAAGTAGGCCCCGTCTTTAGGGCAGAAGATTCTTTTACACATAGACATCTGTGCGAGTTTACAGGTC-TTGATGTTGAAATGGAGATCAAGGAACATT</genome_strand>
        <mrna_strand>CCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAG....................................................................................................................................................................................................................AAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTCTAGTGAAGGAGGTTCAGCTGTTTTCCGATTAGATTATAAAGGTCAACCTGCATGTCTGGCGCAGTCACCTCAACTTCACAAACAAATGGCAATATGTGGTGATTTTGGCCGTGTATTTGAAGTANGCCCCGTCTTTAGGGCAGAAGATTCTTTTACACATAGACATCTGTGCGAGTTTACAGGTCTTTGATGTTGAAATGGAGATCAAGGAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304604" ref_strand="+" ref_description="SGN-E304604 [cLEX-11-D16]">
      <seq>gaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaataccagagaagccaattactggtgccactcaacaacaggtggaagttcaaataagcaaactttattgtgtcaacagggctgtgcccactctaccgattaatattgaggatgctgctagaagcgaggtggagatagaacaagctttagagaaaggagagcagcttgttcgtgtaaatcaggatactcgcttaaacttcagaatactagacatgcgcacacctgcaaatcaaggaatcttccgcattcaatgtcaaatcgaaaatatattcaggcagtttttgctctctgaaggatttgtaggaatccatactccaaaattgattggagggtctagtgaaggaggttcagctgttttccgattagattataaaggtcaacctgcatgtctggcgcagtcacctcaacttcacaaacaaatggcaatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3481" stop="370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3181" g_stop="3024" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3023" i_stop="2081" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2080" g_stop="1970" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="269" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1969" i_stop="1758" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1757" g_stop="1644" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="383" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1643" i_stop="835" i_length="809">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="834" g_stop="670" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="548" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E304604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3181" e_stop="3024"/>
          <exon e_start="2080" e_stop="1970"/>
          <exon e_start="1757" e_stop="1644"/>
          <exon e_start="834" e_stop="670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAGGTAGATTTATTTCAAAAAGGTTATTGCTTTATGCTTTTATAGTTCTTCTTGATACACTTAAGTCATATAATATTAGGCCAATTCTCAATGAAACTAAGTTGGTGTCACTTATATTAATCTTTTAAAAAGTTTTTTTTTAGATTGAGTCCTCAATTTTCCATTCCACTGGACCTGGTTCATTTCTATGCTCCCTAAATCATCTTTCAAACTCCCGTTTGGCCATGATTTTGAAGTTGAAAGTAAAAGCCTGCAAATTTGAGTTTTTGGGAACATGAAGTTGTGTTTGGACATGCATTTTACTTGGAAGTTTTGTGTAGAAGTCCCAAAAACCAAAATTTGTTTGATCCAGCTCTTGGGAACTTGAAAATATTTAAGTTCAGATTTTGAATTTCATGCCAAATAGATATTTGAAGAGAACTTTTCAAAATGTATGACCAAAGTCTAGCTAAGGATCGGGAGTAAGAGATATCCTAAGTTCACAGGCAAAATATTTATGTATATTTAGTGGATTTTTTAATGCAAATGCTGTTGGGTTCACGTGAACCCGTAGGTTAAAGGCTAGATTAGCCAATGTATATGGCTCCTTAATATCCATTTGCTCCATTTGGACCACTAATTCCAAACAGTAACAACTATGCCAAAATTCCAAATAAGTTGAGTTTGGCTATATGAATCGTGCGAATAATTTGTCATTTAAGACAACTTTAGGGTTCATATTACCAGAGCTTTTCTACATTTTAGTCTGACAAGTACCTCTTTCAACAAAACAAAATGATTCATGGAAAATGAGAATAAACAAGAGAAGATGAATAGTGGAGTTGCCTTATTATATGATAAGCCTGATCTAAATGGTGCAGAAGAATCTTTGAAATCTTGTATATGCTGATTATTTTGTTGTTTTTGGTAGTTACTAGTACTTATTAGTCTTTTTTATTTGCTTCAGGTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAGGTATATTCTTTTCTCTTCTCGAATTGGTTCATTGCTTTAATGAAATTTTAACATTGTAATTGGTTGACAATATATTTCAAGGGAAGTCATCAGCATTTCGCAGTTACCTTTTCAAAAATTGAGATTCCAGTAAATTTCAAAAACTGGACTAATGCTGTGTATGTTTTTTCTATCCTTTTGATCGTCTGCTGACATCTTTCTATCAAGTGCAGAAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAATGTTCGTTGTACTACCCGATATTTCCATTTCACCTATTTACTGTTTATTGCAAAATATGTTTTGTATTCTGTTTGGAGAAGAGAGAAGACTGTTGAGAAATTAGTTGTGCGAGTGAGAATTTTGAATAAGTACTGCATTGCCTGAAATACAGGGACCTATATAGTTTGTTACAAACAAGATACAGTGAACTCTTTGGGGAATTTCTTGTACTTTCTGTAATCCCTGAGAATGTAGCTTCTATGCCATTACACCACCTACTCGGTGCTATAAAAATATTGAATATAAACTTCTCATTTATCCAAAAACAAAATTTATAGTGACGTTATTACAACAAGTCTTTAAGTTTAATGTTAGCTAACACCCAAGTGTATCCAACTGCATTTATTTGAATTACTTGATTTTGTGTTTGCTTTAATTTTCATCTTCTTTACAGACTGCATTATGCTTGTTCTGAATTGTCATTTCATGAGGATTTAAGATTCAAAACCGGTAGTTTCATTTTTTCTTGAGATGTAGCCACAAAGATATATGGTAATCTTTTACCAATCTCTATCCACCGCACAATGGAATTAGTATCACAGTTTATAGACATGGTGCCTTGGTGCATATTCCCTTGCTTGCACATTTTCACAATATCATATTCTTATTCTTACTATATTTTTAATGTACAAGTGATTCAGCTTGTGCTTCTAGTCACTTTCTGGTGATAGTATAACAAAAAGAAAGAAGTTACGAGATTGTTCCCTACATTTCTATTGAGTACTTGCAAACTATAAATGATGAGCTAATTTTCTACGGTTAAAATGCAGATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTCTAGTGAAGGAGGTTCAGCTGTTTTCCGATTAGATTATAAAGGTCAACCTGCATGTCTGGCGCAGTCACCTCAACTTCACAAACAAATGGCAATATGT</genome_strand>
        <mrna_strand>GAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAG....................................................................................................................................................................................................................AAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTCTAGTGAAGGAGGTTCAGCTGTTTTCCGATTAGATTATAAAGGTCAACCTGCATGTCTGGCGCAGTCACCTCAACTTCACAAACAAATGGCAATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263791" ref_strand="+" ref_description="SGN-E263791 [cLEG-60-J16]">
      <seq>aaatgaaggaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagatagcttttgtggttgtgagggaacgaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaataccagagaagccaattactggtgccactcaacaacaggtggaagttcaaataagcaaactttattgtgtcaacagggctgtgcccactctaccgattaatattgaggatgctgctagaagcgaggtggagatagaacaagctttagagaaaggagagcagcttgttcgtgtaaatcaggatactcgcttaaacttcagaatactagacatgcgcacacctgcaaatcaaggaatcttccgcattcaatgtcaaatcgaaaatatattcaggcagtttttgctctctgaaggatttgtaggaatccatactccaaaattgattggagggtctagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3571" stop="462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3271" g_stop="3024" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3023" i_stop="2081" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2080" g_stop="1970" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="359" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1969" i_stop="1758" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1757" g_stop="1644" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="473" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1643" i_stop="835" i_length="809">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="834" g_stop="762" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="546" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E263791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3271" e_stop="3024"/>
          <exon e_start="2080" e_stop="1970"/>
          <exon e_start="1757" e_stop="1644"/>
          <exon e_start="834" e_stop="762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAGGTAGATTTATTTCAAAAAGGTTATTGCTTTATGCTTTTATAGTTCTTCTTGATACACTTAAGTCATATAATATTAGGCCAATTCTCAATGAAACTAAGTTGGTGTCACTTATATTAATCTTTTAAAAAGTTTTTTTTTAGATTGAGTCCTCAATTTTCCATTCCACTGGACCTGGTTCATTTCTATGCTCCCTAAATCATCTTTCAAACTCCCGTTTGGCCATGATTTTGAAGTTGAAAGTAAAAGCCTGCAAATTTGAGTTTTTGGGAACATGAAGTTGTGTTTGGACATGCATTTTACTTGGAAGTTTTGTGTAGAAGTCCCAAAAACCAAAATTTGTTTGATCCAGCTCTTGGGAACTTGAAAATATTTAAGTTCAGATTTTGAATTTCATGCCAAATAGATATTTGAAGAGAACTTTTCAAAATGTATGACCAAAGTCTAGCTAAGGATCGGGAGTAAGAGATATCCTAAGTTCACAGGCAAAATATTTATGTATATTTAGTGGATTTTTTAATGCAAATGCTGTTGGGTTCACGTGAACCCGTAGGTTAAAGGCTAGATTAGCCAATGTATATGGCTCCTTAATATCCATTTGCTCCATTTGGACCACTAATTCCAAACAGTAACAACTATGCCAAAATTCCAAATAAGTTGAGTTTGGCTATATGAATCGTGCGAATAATTTGTCATTTAAGACAACTTTAGGGTTCATATTACCAGAGCTTTTCTACATTTTAGTCTGACAAGTACCTCTTTCAACAAAACAAAATGATTCATGGAAAATGAGAATAAACAAGAGAAGATGAATAGTGGAGTTGCCTTATTATATGATAAGCCTGATCTAAATGGTGCAGAAGAATCTTTGAAATCTTGTATATGCTGATTATTTTGTTGTTTTTGGTAGTTACTAGTACTTATTAGTCTTTTTTATTTGCTTCAGGTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAGGTATATTCTTTTCTCTTCTCGAATTGGTTCATTGCTTTAATGAAATTTTAACATTGTAATTGGTTGACAATATATTTCAAGGGAAGTCATCAGCATTTCGCAGTTACCTTTTCAAAAATTGAGATTCCAGTAAATTTCAAAAACTGGACTAATGCTGTGTATGTTTTTTCTATCCTTTTGATCGTCTGCTGACATCTTTCTATCAAGTGCAGAAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAATGTTCGTTGTACTACCCGATATTTCCATTTCACCTATTTACTGTTTATTGCAAAATATGTTTTGTATTCTGTTTGGAGAAGAGAGAAGACTGTTGAGAAATTAGTTGTGCGAGTGAGAATTTTGAATAAGTACTGCATTGCCTGAAATACAGGGACCTATATAGTTTGTTACAAACAAGATACAGTGAACTCTTTGGGGAATTTCTTGTACTTTCTGTAATCCCTGAGAATGTAGCTTCTATGCCATTACACCACCTACTCGGTGCTATAAAAATATTGAATATAAACTTCTCATTTATCCAAAAACAAAATTTATAGTGACGTTATTACAACAAGTCTTTAAGTTTAATGTTAGCTAACACCCAAGTGTATCCAACTGCATTTATTTGAATTACTTGATTTTGTGTTTGCTTTAATTTTCATCTTCTTTACAGACTGCATTATGCTTGTTCTGAATTGTCATTTCATGAGGATTTAAGATTCAAAACCGGTAGTTTCATTTTTTCTTGAGATGTAGCCACAAAGATATATGGTAATCTTTTACCAATCTCTATCCACCGCACAATGGAATTAGTATCACAGTTTATAGACATGGTGCCTTGGTGCATATTCCCTTGCTTGCACATTTTCACAATATCATATTCTTATTCTTACTATATTTTTAATGTACAAGTGATTCAGCTTGTGCTTCTAGTCACTTTCTGGTGATAGTATAACAAAAAGAAAGAAGTTACGAGATTGTTCCCTACATTTCTATTGAGTACTTGCAAACTATAAATGATGAGCTAATTTTCTACGGTTAAAATGCAGATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTCTAGTG</genome_strand>
        <mrna_strand>AAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAG....................................................................................................................................................................................................................AAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTCTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555853" ref_strand="+" ref_description="SGN-E555853 [cTSD-1-J6]">
      <seq>cttctcaaaaaaatggagtcggagaaaccccaaaatccatctccaatggaaccacaagaagaaggcagcaacaaaatctccaaaaaagaagccgccaagctggagcgtcagcgccgccgtcaagaggcagccgccgccgccgccgccactgctgtctccactgtctccattgaagaatctgatccactttccggaaactacggtgacgtagagctgaacgatctgcaatctaaggccgtgacgggtcgaaagtggactgaagttgggtccatcgcgccagaaatgaaggaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagatagcttttgtggttgtgagggaacgaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaataccagagaagccaattactggtgccactcaacaacaggtggaagttcaaataagcaaactttattgtgtcaacagggctgtgcccactctaccgattaatattgaggatgctgctagaagcgaggtggagatagaacaagctttagagaaaggagagcagcttgttcgtgtaaatcaggatactcgcttaaacttcagaatactagacatgcgcacacctgcaaatcaaggaatcttccgcattcaatgtcaaatcgaaaatatattcaggcagtttttgctctctgaaggatttgtaggaatccatactccaaaattgattggagggtctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3851" stop="464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3551" g_stop="3024" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3023" i_stop="2081" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2080" g_stop="1970" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="639" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1969" i_stop="1758" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1757" g_stop="1644" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="753" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1643" i_stop="835" i_length="809">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="834" g_stop="764" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="824" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E555853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3551" e_stop="3024"/>
          <exon e_start="2080" e_stop="1970"/>
          <exon e_start="1757" e_stop="1644"/>
          <exon e_start="834" e_stop="764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCAAAAAAATGGAGTCGGAGAAACCCCAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAGGTAGATTTATTTCAAAAAGGTTATTGCTTTATGCTTTTATAGTTCTTCTTGATACACTTAAGTCATATAATATTAGGCCAATTCTCAATGAAACTAAGTTGGTGTCACTTATATTAATCTTTTAAAAAGTTTTTTTTTAGATTGAGTCCTCAATTTTCCATTCCACTGGACCTGGTTCATTTCTATGCTCCCTAAATCATCTTTCAAACTCCCGTTTGGCCATGATTTTGAAGTTGAAAGTAAAAGCCTGCAAATTTGAGTTTTTGGGAACATGAAGTTGTGTTTGGACATGCATTTTACTTGGAAGTTTTGTGTAGAAGTCCCAAAAACCAAAATTTGTTTGATCCAGCTCTTGGGAACTTGAAAATATTTAAGTTCAGATTTTGAATTTCATGCCAAATAGATATTTGAAGAGAACTTTTCAAAATGTATGACCAAAGTCTAGCTAAGGATCGGGAGTAAGAGATATCCTAAGTTCACAGGCAAAATATTTATGTATATTTAGTGGATTTTTTAATGCAAATGCTGTTGGGTTCACGTGAACCCGTAGGTTAAAGGCTAGATTAGCCAATGTATATGGCTCCTTAATATCCATTTGCTCCATTTGGACCACTAATTCCAAACAGTAACAACTATGCCAAAATTCCAAATAAGTTGAGTTTGGCTATATGAATCGTGCGAATAATTTGTCATTTAAGACAACTTTAGGGTTCATATTACCAGAGCTTTTCTACATTTTAGTCTGACAAGTACCTCTTTCAACAAAACAAAATGATTCATGGAAAATGAGAATAAACAAGAGAAGATGAATAGTGGAGTTGCCTTATTATATGATAAGCCTGATCTAAATGGTGCAGAAGAATCTTTGAAATCTTGTATATGCTGATTATTTTGTTGTTTTTGGTAGTTACTAGTACTTATTAGTCTTTTTTATTTGCTTCAGGTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAGGTATATTCTTTTCTCTTCTCGAATTGGTTCATTGCTTTAATGAAATTTTAACATTGTAATTGGTTGACAATATATTTCAAGGGAAGTCATCAGCATTTCGCAGTTACCTTTTCAAAAATTGAGATTCCAGTAAATTTCAAAAACTGGACTAATGCTGTGTATGTTTTTTCTATCCTTTTGATCGTCTGCTGACATCTTTCTATCAAGTGCAGAAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAATGTTCGTTGTACTACCCGATATTTCCATTTCACCTATTTACTGTTTATTGCAAAATATGTTTTGTATTCTGTTTGGAGAAGAGAGAAGACTGTTGAGAAATTAGTTGTGCGAGTGAGAATTTTGAATAAGTACTGCATTGCCTGAAATACAGGGACCTATATAGTTTGTTACAAACAAGATACAGTGAACTCTTTGGGGAATTTCTTGTACTTTCTGTAATCCCTGAGAATGTAGCTTCTATGCCATTACACCACCTACTCGGTGCTATAAAAATATTGAATATAAACTTCTCATTTATCCAAAAACAAAATTTATAGTGACGTTATTACAACAAGTCTTTAAGTTTAATGTTAGCTAACACCCAAGTGTATCCAACTGCATTTATTTGAATTACTTGATTTTGTGTTTGCTTTAATTTTCATCTTCTTTACAGACTGCATTATGCTTGTTCTGAATTGTCATTTCATGAGGATTTAAGATTCAAAACCGGTAGTTTCATTTTTTCTTGAGATGTAGCCACAAAGATATATGGTAATCTTTTACCAATCTCTATCCACCGCACAATGGAATTAGTATCACAGTTTATAGACATGGTGCCTTGGTGCATATTCCCTTGCTTGCACATTTTCACAATATCATATTCTTATTCTTACTATATTTTTAATGTACAAGTGATTCAGCTTGTGCTTCTAGTCACTTTCTGGTGATAGTATAACAAAAAGAAAGAAGTTACGAGATTGTTCCCTACATTTCTATTGAGTACTTGCAAACTATAAATGATGAGCTAATTTTCTACGGTTAAAATGCAGATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTCTAG</genome_strand>
        <mrna_strand>CTTCTCAAAAAAATGGAGTCGGAGAAACCCCAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAG....................................................................................................................................................................................................................AAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205944" ref_strand="+" ref_description="SGN-E205944 [cLEC-20-K11]">
      <seq>tgaagttgggtccatcgcgccagaaatgaaggaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagatagcttttgtggttgtgagggaacgaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaataccagagaagccaattactggtgccactcaacaacaggtggaagttcaaataagcaaactttattgtgtcaacagggctgtgcccactctaccgattaatattgaggatgctgctagaagcgaggtggagatagaacaagctttagagaaaggagagcagcttgttcgtgtaaatcaggatactcgcttaaacttcagaatactagacatgcgcacacctgcaaatcaaggaatcttccgcattcaatgtcaaatcgaaaatatattcaggcagtttttgctctctgaaggatttgtaggaatccatactccaaaattgattggagggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3594" stop="467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3294" g_stop="3024" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3023" i_stop="2081" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2080" g_stop="1970" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="382" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1969" i_stop="1758" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1757" g_stop="1644" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="496" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1643" i_stop="835" i_length="809">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="834" g_stop="767" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="564" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E205944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3294" e_stop="3024"/>
          <exon e_start="2080" e_stop="1970"/>
          <exon e_start="1757" e_stop="1644"/>
          <exon e_start="834" e_stop="767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAGGTAGATTTATTTCAAAAAGGTTATTGCTTTATGCTTTTATAGTTCTTCTTGATACACTTAAGTCATATAATATTAGGCCAATTCTCAATGAAACTAAGTTGGTGTCACTTATATTAATCTTTTAAAAAGTTTTTTTTTAGATTGAGTCCTCAATTTTCCATTCCACTGGACCTGGTTCATTTCTATGCTCCCTAAATCATCTTTCAAACTCCCGTTTGGCCATGATTTTGAAGTTGAAAGTAAAAGCCTGCAAATTTGAGTTTTTGGGAACATGAAGTTGTGTTTGGACATGCATTTTACTTGGAAGTTTTGTGTAGAAGTCCCAAAAACCAAAATTTGTTTGATCCAGCTCTTGGGAACTTGAAAATATTTAAGTTCAGATTTTGAATTTCATGCCAAATAGATATTTGAAGAGAACTTTTCAAAATGTATGACCAAAGTCTAGCTAAGGATCGGGAGTAAGAGATATCCTAAGTTCACAGGCAAAATATTTATGTATATTTAGTGGATTTTTTAATGCAAATGCTGTTGGGTTCACGTGAACCCGTAGGTTAAAGGCTAGATTAGCCAATGTATATGGCTCCTTAATATCCATTTGCTCCATTTGGACCACTAATTCCAAACAGTAACAACTATGCCAAAATTCCAAATAAGTTGAGTTTGGCTATATGAATCGTGCGAATAATTTGTCATTTAAGACAACTTTAGGGTTCATATTACCAGAGCTTTTCTACATTTTAGTCTGACAAGTACCTCTTTCAACAAAACAAAATGATTCATGGAAAATGAGAATAAACAAGAGAAGATGAATAGTGGAGTTGCCTTATTATATGATAAGCCTGATCTAAATGGTGCAGAAGAATCTTTGAAATCTTGTATATGCTGATTATTTTGTTGTTTTTGGTAGTTACTAGTACTTATTAGTCTTTTTTATTTGCTTCAGGTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAGGTATATTCTTTTCTCTTCTCGAATTGGTTCATTGCTTTAATGAAATTTTAACATTGTAATTGGTTGACAATATATTTCAAGGGAAGTCATCAGCATTTCGCAGTTACCTTTTCAAAAATTGAGATTCCAGTAAATTTCAAAAACTGGACTAATGCTGTGTATGTTTTTTCTATCCTTTTGATCGTCTGCTGACATCTTTCTATCAAGTGCAGAAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAATGTTCGTTGTACTACCCGATATTTCCATTTCACCTATTTACTGTTTATTGCAAAATATGTTTTGTATTCTGTTTGGAGAAGAGAGAAGACTGTTGAGAAATTAGTTGTGCGAGTGAGAATTTTGAATAAGTACTGCATTGCCTGAAATACAGGGACCTATATAGTTTGTTACAAACAAGATACAGTGAACTCTTTGGGGAATTTCTTGTACTTTCTGTAATCCCTGAGAATGTAGCTTCTATGCCATTACACCACCTACTCGGTGCTATAAAAATATTGAATATAAACTTCTCATTTATCCAAAAACAAAATTTATAGTGACGTTATTACAACAAGTCTTTAAGTTTAATGTTAGCTAACACCCAAGTGTATCCAACTGCATTTATTTGAATTACTTGATTTTGTGTTTGCTTTAATTTTCATCTTCTTTACAGACTGCATTATGCTTGTTCTGAATTGTCATTTCATGAGGATTTAAGATTCAAAACCGGTAGTTTCATTTTTTCTTGAGATGTAGCCACAAAGATATATGGTAATCTTTTACCAATCTCTATCCACCGCACAATGGAATTAGTATCACAGTTTATAGACATGGTGCCTTGGTGCATATTCCCTTGCTTGCACATTTTCACAATATCATATTCTTATTCTTACTATATTTTTAATGTACAAGTGATTCAGCTTGTGCTTCTAGTCACTTTCTGGTGATAGTATAACAAAAAGAAAGAAGTTACGAGATTGTTCCCTACATTTCTATTGAGTACTTGCAAACTATAAATGATGAGCTAATTTTCTACGGTTAAAATGCAGATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTC</genome_strand>
        <mrna_strand>TGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAG....................................................................................................................................................................................................................AAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314241" ref_strand="+" ref_description="SGN-E314241 [cTOA-21-D15]">
      <seq>caaaatccatctccaatggaaccacaagaagaaggcagcaacaaaatctccaaaaaagaagccgccaagctggagcgtcagcgccgccgtcaagaggcagccgccgccgccgccgccactgctgtctccactgtctccattgaagaatctgatccactttccggaaactacggtgacgtagagctgaacgatctgcaatctaaggccgtgacgggtcgaaagtggactgaagttgggtccatcgcgccagaaatgaaggaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagatagcttttgtggttgtgagggaacgaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaataccagagaagccaattactggtgccactcaacaacaggtggaagttcaaataagcaaactttattgtgcaaacagggctgtgcccactctaccgattaatattgaggatgctgctagaagcgaggtggagatagaacaagctttagagaaaggagagcagcttgttcgtgtaaatcaggatactcgcttaaacttcagaatactagacatgcgcacacctgcaaatcaaggaatcttccgcattcaatgtcaaatcngaaatatattcaggcagtttttgctctctgaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3821" stop="506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3521" g_stop="3024" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3023" i_stop="2081" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2080" g_stop="1970" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="609" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1969" i_stop="1758" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1757" g_stop="1644" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="723" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1643" i_stop="835" i_length="809">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="834" g_stop="806" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="752" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E314241" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3521" e_stop="3024"/>
          <exon e_start="2080" e_stop="1970"/>
          <exon e_start="1757" e_stop="1644"/>
          <exon e_start="834" e_stop="806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAGGTAGATTTATTTCAAAAAGGTTATTGCTTTATGCTTTTATAGTTCTTCTTGATACACTTAAGTCATATAATATTAGGCCAATTCTCAATGAAACTAAGTTGGTGTCACTTATATTAATCTTTTAAAAAGTTTTTTTTTAGATTGAGTCCTCAATTTTCCATTCCACTGGACCTGGTTCATTTCTATGCTCCCTAAATCATCTTTCAAACTCCCGTTTGGCCATGATTTTGAAGTTGAAAGTAAAAGCCTGCAAATTTGAGTTTTTGGGAACATGAAGTTGTGTTTGGACATGCATTTTACTTGGAAGTTTTGTGTAGAAGTCCCAAAAACCAAAATTTGTTTGATCCAGCTCTTGGGAACTTGAAAATATTTAAGTTCAGATTTTGAATTTCATGCCAAATAGATATTTGAAGAGAACTTTTCAAAATGTATGACCAAAGTCTAGCTAAGGATCGGGAGTAAGAGATATCCTAAGTTCACAGGCAAAATATTTATGTATATTTAGTGGATTTTTTAATGCAAATGCTGTTGGGTTCACGTGAACCCGTAGGTTAAAGGCTAGATTAGCCAATGTATATGGCTCCTTAATATCCATTTGCTCCATTTGGACCACTAATTCCAAACAGTAACAACTATGCCAAAATTCCAAATAAGTTGAGTTTGGCTATATGAATCGTGCGAATAATTTGTCATTTAAGACAACTTTAGGGTTCATATTACCAGAGCTTTTCTACATTTTAGTCTGACAAGTACCTCTTTCAACAAAACAAAATGATTCATGGAAAATGAGAATAAACAAGAGAAGATGAATAGTGGAGTTGCCTTATTATATGATAAGCCTGATCTAAATGGTGCAGAAGAATCTTTGAAATCTTGTATATGCTGATTATTTTGTTGTTTTTGGTAGTTACTAGTACTTATTAGTCTTTTTTATTTGCTTCAGGTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAGGTATATTCTTTTCTCTTCTCGAATTGGTTCATTGCTTTAATGAAATTTTAACATTGTAATTGGTTGACAATATATTTCAAGGGAAGTCATCAGCATTTCGCAGTTACCTTTTCAAAAATTGAGATTCCAGTAAATTTCAAAAACTGGACTAATGCTGTGTATGTTTTTTCTATCCTTTTGATCGTCTGCTGACATCTTTCTATCAAGTGCAGAAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAATGTTCGTTGTACTACCCGATATTTCCATTTCACCTATTTACTGTTTATTGCAAAATATGTTTTGTATTCTGTTTGGAGAAGAGAGAAGACTGTTGAGAAATTAGTTGTGCGAGTGAGAATTTTGAATAAGTACTGCATTGCCTGAAATACAGGGACCTATATAGTTTGTTACAAACAAGATACAGTGAACTCTTTGGGGAATTTCTTGTACTTTCTGTAATCCCTGAGAATGTAGCTTCTATGCCATTACACCACCTACTCGGTGCTATAAAAATATTGAATATAAACTTCTCATTTATCCAAAAACAAAATTTATAGTGACGTTATTACAACAAGTCTTTAAGTTTAATGTTAGCTAACACCCAAGTGTATCCAACTGCATTTATTTGAATTACTTGATTTTGTGTTTGCTTTAATTTTCATCTTCTTTACAGACTGCATTATGCTTGTTCTGAATTGTCATTTCATGAGGATTTAAGATTCAAAACCGGTAGTTTCATTTTTTCTTGAGATGTAGCCACAAAGATATATGGTAATCTTTTACCAATCTCTATCCACCGCACAATGGAATTAGTATCACAGTTTATAGACATGGTGCCTTGGTGCATATTCCCTTGCTTGCACATTTTCACAATATCATATTCTTATTCTTACTATATTTTTAATGTACAAGTGATTCAGCTTGTGCTTCTAGTCACTTTCTGGTGATAGTATAACAAAAAGAAAGAAGTTACGAGATTGTTCCCTACATTTCTATTGAGTACTTGCAAACTATAAATGATGAGCTAATTTTCTACGGTTAAAATGCAGATATTCAGGCAGTTTTTGCTCTCTGAAGG</genome_strand>
        <mrna_strand>CAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTTCAAATAAGCAAACTTTATTGTGCAAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAG....................................................................................................................................................................................................................AAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCNGAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCAGGCAGTTTTTGCTCTCTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213183" ref_strand="+" ref_description="SGN-E213183 [cLEC-72-B19]">
      <seq>tgcaatctaaggccgtgacgggtcgaaagtggactgaagttgggtccatcgcgccagaaatgaaggaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagatagcttttgtggttgtgagggaacgaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaataccagagaagccaattactggtgccactcaacaacaggtggaagttcaaataagcaaactttattgtgtcaacagggctgtgcccactctaccgattaatattgaggatgctgctagaagcgaggtggagatagaacaagctttagagaaaggagagcagcttgttcgtgtaaatcaggatactcgcttaaacttcagaatactagacatgcgcacacctgcaaatccaggaatcttccgcattcaatgtcaaatcgaaaatatattcaggcagttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3628" stop="1342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3328" g_stop="3024" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3023" i_stop="2081" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2080" g_stop="1970" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="416" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1969" i_stop="1758" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1757" g_stop="1644" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="530" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E213183" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3328" e_stop="3024"/>
          <exon e_start="2080" e_stop="1970"/>
          <exon e_start="1757" e_stop="1644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAGGTAGATTTATTTCAAAAAGGTTATTGCTTTATGCTTTTATAGTTCTTCTTGATACACTTAAGTCATATAATATTAGGCCAATTCTCAATGAAACTAAGTTGGTGTCACTTATATTAATCTTTTAAAAAGTTTTTTTTTAGATTGAGTCCTCAATTTTCCATTCCACTGGACCTGGTTCATTTCTATGCTCCCTAAATCATCTTTCAAACTCCCGTTTGGCCATGATTTTGAAGTTGAAAGTAAAAGCCTGCAAATTTGAGTTTTTGGGAACATGAAGTTGTGTTTGGACATGCATTTTACTTGGAAGTTTTGTGTAGAAGTCCCAAAAACCAAAATTTGTTTGATCCAGCTCTTGGGAACTTGAAAATATTTAAGTTCAGATTTTGAATTTCATGCCAAATAGATATTTGAAGAGAACTTTTCAAAATGTATGACCAAAGTCTAGCTAAGGATCGGGAGTAAGAGATATCCTAAGTTCACAGGCAAAATATTTATGTATATTTAGTGGATTTTTTAATGCAAATGCTGTTGGGTTCACGTGAACCCGTAGGTTAAAGGCTAGATTAGCCAATGTATATGGCTCCTTAATATCCATTTGCTCCATTTGGACCACTAATTCCAAACAGTAACAACTATGCCAAAATTCCAAATAAGTTGAGTTTGGCTATATGAATCGTGCGAATAATTTGTCATTTAAGACAACTTTAGGGTTCATATTACCAGAGCTTTTCTACATTTTAGTCTGACAAGTACCTCTTTCAACAAAACAAAATGATTCATGGAAAATGAGAATAAACAAGAGAAGATGAATAGTGGAGTTGCCTTATTATATGATAAGCCTGATCTAAATGGTGCAGAAGAATCTTTGAAATCTTGTATATGCTGATTATTTTGTTGTTTTTGGTAGTTACTAGTACTTATTAGTCTTTTTTATTTGCTTCAGGTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAGGTATATTCTTTTCTCTTCTCGAATTGGTTCATTGCTTTAATGAAATTTTAACATTGTAATTGGTTGACAATATATTTCAAGGGAAGTCATCAGCATTTCGCAGTTACCTTTTCAAAAATTGAGATTCCAGTAAATTTCAAAAACTGGACTAATGCTGTGTATGTTTTTTCTATCCTTTTGATCGTCTGCTGACATCTTTCTATCAAGTGCAGAAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAAT</genome_strand>
        <mrna_strand>TGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAG....................................................................................................................................................................................................................AAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCCAGGAATCTTCCGCATTCAATGTCAAATCGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206847" ref_strand="+" ref_description="SGN-E206847 [cLEC-33-G10]">
      <seq>cgtgacgggtcgaaagtggactgaagttgggtccatcgcgccagaaatgaaggaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagatagcttttgtggttgtgagggaacgaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaataccagagaagccaattactggtgccactcaacaacaggtggaagttcaaataagcaaactttattgtgtcaacagggctgtgcccactctaccgattaatattgaggatgctgctagaagcgaggtggagatagaacaagctttagagaaaggagagcagcttgttcgtgtaaatcaggatactcgcttaaacttcagaatactagacatgcgcacacctgcaaatcaaggaatcttccgcattcaatgtcaaatcgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3615" stop="1345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3315" g_stop="3024" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3023" i_stop="2081" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2080" g_stop="1970" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="403" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1969" i_stop="1758" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1757" g_stop="1645" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="516" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E206847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3315" e_stop="3024"/>
          <exon e_start="2080" e_stop="1970"/>
          <exon e_start="1757" e_stop="1645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAGGTAGATTTATTTCAAAAAGGTTATTGCTTTATGCTTTTATAGTTCTTCTTGATACACTTAAGTCATATAATATTAGGCCAATTCTCAATGAAACTAAGTTGGTGTCACTTATATTAATCTTTTAAAAAGTTTTTTTTTAGATTGAGTCCTCAATTTTCCATTCCACTGGACCTGGTTCATTTCTATGCTCCCTAAATCATCTTTCAAACTCCCGTTTGGCCATGATTTTGAAGTTGAAAGTAAAAGCCTGCAAATTTGAGTTTTTGGGAACATGAAGTTGTGTTTGGACATGCATTTTACTTGGAAGTTTTGTGTAGAAGTCCCAAAAACCAAAATTTGTTTGATCCAGCTCTTGGGAACTTGAAAATATTTAAGTTCAGATTTTGAATTTCATGCCAAATAGATATTTGAAGAGAACTTTTCAAAATGTATGACCAAAGTCTAGCTAAGGATCGGGAGTAAGAGATATCCTAAGTTCACAGGCAAAATATTTATGTATATTTAGTGGATTTTTTAATGCAAATGCTGTTGGGTTCACGTGAACCCGTAGGTTAAAGGCTAGATTAGCCAATGTATATGGCTCCTTAATATCCATTTGCTCCATTTGGACCACTAATTCCAAACAGTAACAACTATGCCAAAATTCCAAATAAGTTGAGTTTGGCTATATGAATCGTGCGAATAATTTGTCATTTAAGACAACTTTAGGGTTCATATTACCAGAGCTTTTCTACATTTTAGTCTGACAAGTACCTCTTTCAACAAAACAAAATGATTCATGGAAAATGAGAATAAACAAGAGAAGATGAATAGTGGAGTTGCCTTATTATATGATAAGCCTGATCTAAATGGTGCAGAAGAATCTTTGAAATCTTGTATATGCTGATTATTTTGTTGTTTTTGGTAGTTACTAGTACTTATTAGTCTTTTTTATTTGCTTCAGGTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAGGTATATTCTTTTCTCTTCTCGAATTGGTTCATTGCTTTAATGAAATTTTAACATTGTAATTGGTTGACAATATATTTCAAGGGAAGTCATCAGCATTTCGCAGTTACCTTTTCAAAAATTGAGATTCCAGTAAATTTCAAAAACTGGACTAATGCTGTGTATGTTTTTTCTATCCTTTTGATCGTCTGCTGACATCTTTCTATCAAGTGCAGAAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAA</genome_strand>
        <mrna_strand>CGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAG....................................................................................................................................................................................................................AAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212729" ref_strand="+" ref_description="SGN-E212729 [cLEC-73-L19]">
      <seq>gaaagtggactgaagttgggtccatcgcgccagaaatgaaggaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagtagcttttgtggttgtgagggaacgaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaataccagagaagccaattactggtgccactcaacaacaggtggaagttcaaataagcaaactttattgtgtcaacagggctgtgcccactctaccgattaatattgaggatgctgctagaagcgaggtggagatagaacaagctttagagaaaggagagcagcttgttcgtgtaaatcaggatactcgcttaaacttcagaatactagacatgcgcacacctgcaaatcaaggaatcttccgcattcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3604" stop="1357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3304" g_stop="3024" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3023" i_stop="2081" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2080" g_stop="1970" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="391" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1969" i_stop="1758" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1757" g_stop="1657" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="492" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E212729" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3304" e_stop="3024"/>
          <exon e_start="2080" e_stop="1970"/>
          <exon e_start="1757" e_stop="1657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAGGTAGATTTATTTCAAAAAGGTTATTGCTTTATGCTTTTATAGTTCTTCTTGATACACTTAAGTCATATAATATTAGGCCAATTCTCAATGAAACTAAGTTGGTGTCACTTATATTAATCTTTTAAAAAGTTTTTTTTTAGATTGAGTCCTCAATTTTCCATTCCACTGGACCTGGTTCATTTCTATGCTCCCTAAATCATCTTTCAAACTCCCGTTTGGCCATGATTTTGAAGTTGAAAGTAAAAGCCTGCAAATTTGAGTTTTTGGGAACATGAAGTTGTGTTTGGACATGCATTTTACTTGGAAGTTTTGTGTAGAAGTCCCAAAAACCAAAATTTGTTTGATCCAGCTCTTGGGAACTTGAAAATATTTAAGTTCAGATTTTGAATTTCATGCCAAATAGATATTTGAAGAGAACTTTTCAAAATGTATGACCAAAGTCTAGCTAAGGATCGGGAGTAAGAGATATCCTAAGTTCACAGGCAAAATATTTATGTATATTTAGTGGATTTTTTAATGCAAATGCTGTTGGGTTCACGTGAACCCGTAGGTTAAAGGCTAGATTAGCCAATGTATATGGCTCCTTAATATCCATTTGCTCCATTTGGACCACTAATTCCAAACAGTAACAACTATGCCAAAATTCCAAATAAGTTGAGTTTGGCTATATGAATCGTGCGAATAATTTGTCATTTAAGACAACTTTAGGGTTCATATTACCAGAGCTTTTCTACATTTTAGTCTGACAAGTACCTCTTTCAACAAAACAAAATGATTCATGGAAAATGAGAATAAACAAGAGAAGATGAATAGTGGAGTTGCCTTATTATATGATAAGCCTGATCTAAATGGTGCAGAAGAATCTTTGAAATCTTGTATATGCTGATTATTTTGTTGTTTTTGGTAGTTACTAGTACTTATTAGTCTTTTTTATTTGCTTCAGGTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAGGTATATTCTTTTCTCTTCTCGAATTGGTTCATTGCTTTAATGAAATTTTAACATTGTAATTGGTTGACAATATATTTCAAGGGAAGTCATCAGCATTTCGCAGTTACCTTTTCAAAAATTGAGATTCCAGTAAATTTCAAAAACTGGACTAATGCTGTGTATGTTTTTTCTATCCTTTTGATCGTCTGCTGACATCTTTCTATCAAGTGCAGAAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATG</genome_strand>
        <mrna_strand>GAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAG-TAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAG....................................................................................................................................................................................................................AAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698819" ref_strand="+" ref_description="SGN-E698819 [FA07CG07]">
      <seq>agtcttctcaaaaaaatggagtcggagaaaccttaaaatccatctccaatggaaccacaagaagaaggcagcaacaaaatctccaaaaaagaagccgccaagctggagcgtcagcgccgccgtcaagaggcagccgccgccgccgccgccactgctgtctccactgtctccattgaagaatctgatccactttccggaaactacggtgacgtagagctgaacgatctgcaatctaaggccgtgacgggtcgaaagtggactgaagttgggtccatcgcgccagaaatgaaggaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagatagcttttgtggttgtgagggaacgaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaataccagagaagccaattactggtgccactcaacaacaggtggaagttcaaataagcaaactttattgtgtcaacagggctgtgcccactctaccgattaatattgaggatgctgctagaagcgaggtggagatagaacaagctttagagaaaggagagcagcttgttcgtgtaaatcaggatactcgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3854" stop="1417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3554" g_stop="3024" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3023" i_stop="2081" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2080" g_stop="1970" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="642" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1969" i_stop="1758" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1757" g_stop="1717" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="683" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E698819" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3554" e_stop="3024"/>
          <exon e_start="2080" e_stop="1970"/>
          <exon e_start="1757" e_stop="1717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTTCTCAAAAAAATGGAGTCGGAGAAACCCCAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAGGTAGATTTATTTCAAAAAGGTTATTGCTTTATGCTTTTATAGTTCTTCTTGATACACTTAAGTCATATAATATTAGGCCAATTCTCAATGAAACTAAGTTGGTGTCACTTATATTAATCTTTTAAAAAGTTTTTTTTTAGATTGAGTCCTCAATTTTCCATTCCACTGGACCTGGTTCATTTCTATGCTCCCTAAATCATCTTTCAAACTCCCGTTTGGCCATGATTTTGAAGTTGAAAGTAAAAGCCTGCAAATTTGAGTTTTTGGGAACATGAAGTTGTGTTTGGACATGCATTTTACTTGGAAGTTTTGTGTAGAAGTCCCAAAAACCAAAATTTGTTTGATCCAGCTCTTGGGAACTTGAAAATATTTAAGTTCAGATTTTGAATTTCATGCCAAATAGATATTTGAAGAGAACTTTTCAAAATGTATGACCAAAGTCTAGCTAAGGATCGGGAGTAAGAGATATCCTAAGTTCACAGGCAAAATATTTATGTATATTTAGTGGATTTTTTAATGCAAATGCTGTTGGGTTCACGTGAACCCGTAGGTTAAAGGCTAGATTAGCCAATGTATATGGCTCCTTAATATCCATTTGCTCCATTTGGACCACTAATTCCAAACAGTAACAACTATGCCAAAATTCCAAATAAGTTGAGTTTGGCTATATGAATCGTGCGAATAATTTGTCATTTAAGACAACTTTAGGGTTCATATTACCAGAGCTTTTCTACATTTTAGTCTGACAAGTACCTCTTTCAACAAAACAAAATGATTCATGGAAAATGAGAATAAACAAGAGAAGATGAATAGTGGAGTTGCCTTATTATATGATAAGCCTGATCTAAATGGTGCAGAAGAATCTTTGAAATCTTGTATATGCTGATTATTTTGTTGTTTTTGGTAGTTACTAGTACTTATTAGTCTTTTTTATTTGCTTCAGGTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAGGTATATTCTTTTCTCTTCTCGAATTGGTTCATTGCTTTAATGAAATTTTAACATTGTAATTGGTTGACAATATATTTCAAGGGAAGTCATCAGCATTTCGCAGTTACCTTTTCAAAAATTGAGATTCCAGTAAATTTCAAAAACTGGACTAATGCTGTGTATGTTTTTTCTATCCTTTTGATCGTCTGCTGACATCTTTCTATCAAGTGCAGAAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTT</genome_strand>
        <mrna_strand>AGTCTTCTCAAAAAAATGGAGTCGGAGAAACCTTAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAG....................................................................................................................................................................................................................AAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284312" ref_strand="+" ref_description="SGN-E284312 [cLER-16-H14]">
      <seq>aaaaaaatggagtcggagaaaccccaaaatccatctccaatggaaccacaagaagaaggcagcaacaaaatctccaaaaaagaagccgccaagctggagcgtcagcgccgccgtcaagaggcagccgccgccgccgccgccactgctgtctccactgtctccattgaagaatctgatccactttccggaaactacggtgacgtagagctgaacgatctgcaatctaaggccgtgacgggtcgaaagtggactgaagttgggtccatcgcgccagaaatgaaggaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagatagcttttgtggttgtgagggaacgaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaataccagagaagccaattactggtgccactcaacaacaggtggaagttcaaataagcaaactttattgtgtcaacaagggtgtgcccactctaccgattaatattgaggatgctgctagaagcgaggtggagatagaacaggcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3845" stop="1673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3545" g_stop="3024" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3023" i_stop="2081" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2080" g_stop="1973" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="630" r_length="108" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E284312" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3545" e_stop="3024"/>
          <exon e_start="2080" e_stop="1973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATGGAGTCGGAGAAACCCCAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAGGTAGATTTATTTCAAAAAGGTTATTGCTTTATGCTTTTATAGTTCTTCTTGATACACTTAAGTCATATAATATTAGGCCAATTCTCAATGAAACTAAGTTGGTGTCACTTATATTAATCTTTTAAAAAGTTTTTTTTTAGATTGAGTCCTCAATTTTCCATTCCACTGGACCTGGTTCATTTCTATGCTCCCTAAATCATCTTTCAAACTCCCGTTTGGCCATGATTTTGAAGTTGAAAGTAAAAGCCTGCAAATTTGAGTTTTTGGGAACATGAAGTTGTGTTTGGACATGCATTTTACTTGGAAGTTTTGTGTAGAAGTCCCAAAAACCAAAATTTGTTTGATCCAGCTCTTGGGAACTTGAAAATATTTAAGTTCAGATTTTGAATTTCATGCCAAATAGATATTTGAAGAGAACTTTTCAAAATGTATGACCAAAGTCTAGCTAAGGATCGGGAGTAAGAGATATCCTAAGTTCACAGGCAAAATATTTATGTATATTTAGTGGATTTTTTAATGCAAATGCTGTTGGGTTCACGTGAACCCGTAGGTTAAAGGCTAGATTAGCCAATGTATATGGCTCCTTAATATCCATTTGCTCCATTTGGACCACTAATTCCAAACAGTAACAACTATGCCAAAATTCCAAATAAGTTGAGTTTGGCTATATGAATCGTGCGAATAATTTGTCATTTAAGACAACTTTAGGGTTCATATTACCAGAGCTTTTCTACATTTTAGTCTGACAAGTACCTCTTTCAACAAAACAAAATGATTCATGGAAAATGAGAATAAACAAGAGAAGATGAATAGTGGAGTTGCCTTATTATATGATAAGCCTGATCTAAATGGTGCAGAAGAATCTTTGAAATCTTGTATATGCTGATTATTTTGTTGTTTTTGGTAGTTACTAGTACTTATTAGTCTTTTTTATTTGCTTCAGGTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTA</genome_strand>
        <mrna_strand>AAAAAAATGGAGTCGGAGAAACCCCAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAAGGGTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAGGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300173" ref_strand="+" ref_description="SGN-E300173 [cLEW-17-C5]">
      <seq>ttctcaaaaaaatggagtcggagaaaccccaaaatccatctccaatggaaccacaagaagaaggcagcaacaaaatctccaaaaaagaagccgccaagctggagcgtcagcgccgccgtcaagaggcagccgccgccgccgccgccactgctgtctccactgtctccattgaagaatctgatccactttccggaaactacggtgacgtagagctgaacgatctgcaatctaaagccgtgacgggtcgaaagtggactgaagttgggtccatcgcgccagaaatgaaagaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagatagcctttgtggttgtgagggaacgaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaataccagagaagccaattactggtgccactcaacaacaggtggaagttcaaataagcaaactttattgtgtcaacaaggctgtgcccactctaccgattaatattgaagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3850" stop="1706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3550" g_stop="3024" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3023" i_stop="2081" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2080" g_stop="2006" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="602" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E300173" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3550" e_stop="3024"/>
          <exon e_start="2080" e_stop="2006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAAAAAAATGGAGTCGGAGAAACCCCAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAGGTAGATTTATTTCAAAAAGGTTATTGCTTTATGCTTTTATAGTTCTTCTTGATACACTTAAGTCATATAATATTAGGCCAATTCTCAATGAAACTAAGTTGGTGTCACTTATATTAATCTTTTAAAAAGTTTTTTTTTAGATTGAGTCCTCAATTTTCCATTCCACTGGACCTGGTTCATTTCTATGCTCCCTAAATCATCTTTCAAACTCCCGTTTGGCCATGATTTTGAAGTTGAAAGTAAAAGCCTGCAAATTTGAGTTTTTGGGAACATGAAGTTGTGTTTGGACATGCATTTTACTTGGAAGTTTTGTGTAGAAGTCCCAAAAACCAAAATTTGTTTGATCCAGCTCTTGGGAACTTGAAAATATTTAAGTTCAGATTTTGAATTTCATGCCAAATAGATATTTGAAGAGAACTTTTCAAAATGTATGACCAAAGTCTAGCTAAGGATCGGGAGTAAGAGATATCCTAAGTTCACAGGCAAAATATTTATGTATATTTAGTGGATTTTTTAATGCAAATGCTGTTGGGTTCACGTGAACCCGTAGGTTAAAGGCTAGATTAGCCAATGTATATGGCTCCTTAATATCCATTTGCTCCATTTGGACCACTAATTCCAAACAGTAACAACTATGCCAAAATTCCAAATAAGTTGAGTTTGGCTATATGAATCGTGCGAATAATTTGTCATTTAAGACAACTTTAGGGTTCATATTACCAGAGCTTTTCTACATTTTAGTCTGACAAGTACCTCTTTCAACAAAACAAAATGATTCATGGAAAATGAGAATAAACAAGAGAAGATGAATAGTGGAGTTGCCTTATTATATGATAAGCCTGATCTAAATGGTGCAGAAGAATCTTTGAAATCTTGTATATGCTGATTATTTTGTTGTTTTTGGTAGTTACTAGTACTTATTAGTCTTTTTTATTTGCTTCAGGTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCT</genome_strand>
        <mrna_strand>TTCTCAAAAAAATGGAGTCGGAGAAACCCCAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAAGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAAGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCCTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAAGGCTGTGCCCACTCTACCGATTAATATTGAAGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329809" ref_strand="+" ref_description="SGN-E329809 [cTOD-3-B1]">
      <seq>aaaaatggagtcggagaaaccccacaatccatctccaatggaaccacaagaagaaggcagcaacaaaatctccaaaaacgaagccgccaagctggagcgtcagcgccgccgtcaagaggcagccgccgccgccgacgccactgctgtctccactgtctccattgaagaatctgatccactttccggaaactacggtgacgtagagctgaacgatctgcaatctaaggccgtgacgggtcgaaagtggactgaagttgggtccatcgcgccagaaatgaaggaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagatagcttttgtggttgtgagggaacgaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaataccagagaagccaattactggtgccactcaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3843" stop="2726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3543" g_stop="3026" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E329809" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3543" e_stop="3026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGAGTCGGAGAAACCCCAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAAC</genome_strand>
        <mrna_strand>AAAAATGGAGTCGGAGAAACCCCACAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAACGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGACGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257933" ref_strand="+" ref_description="SGN-E257933 [cLEG-48-K23]">
      <seq>aaaaaaatggagtcggagaaaccccaaaatccatctccaatggaaccacaagaagaaggcagcaacaaaatctccaaaaaagaagccgccaagctggagcgtcagcgccgccgtcaagaggcagccgccgccgccgccgccactgctgtctccactgtctccattgaagaatctgatccactttccggaaactacggtgacgtagagctgaacgatctgcaatctaaggccgtgacgggtcgaaagtggactgaagttgggtccatcgcgccagaaatgaaggaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagatagcttttgtggttgtgagggaacgaggatttacggtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatgttgaaggtgttgttacaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3845" stop="2760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3545" g_stop="3060" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E257933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3545" e_stop="3060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATGGAGTCGGAGAAACCCCAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATA</genome_strand>
        <mrna_strand>AAAAAAATGGAGTCGGAGAAACCCCAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288674" ref_strand="+" ref_description="SGN-E288674 [cLES-8-P22]">
      <seq>gaaggcagcaacaaaatctccaaaaaagaagccgccaagctggagcgtcagcgccgccgtcaagaggcagccgccgccgccgccgccactgctgtctccactgtctccattgaagaatctgatccactttccggaaactacggtgacgtagagctgaacgatctgcaatctaaggccgtgacgggtcgaaagtggactgaagttgggtccatcgcgccagaaatgaaggaccgggtggtcttggttcgggggagggtacagacgattcgtcctgttgggaaaaagatagcttttgtggttgtgagggaacgaggatttaccgtgcagtgtgtattgactgtgaagcctgaattggttagttcacaaatggtgaaatatgctactagtttgagcaaagagtccattattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="3791" stop="2780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3491" g_stop="3080" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E288674" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3491" e_stop="3080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATG</genome_strand>
        <mrna_strand>GAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACCGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735123" ref_strand="+" ref_description="SGN-E735123 [LB14CA06]">
      <seq>gtctcatgctgcggaagatcttaagaaatgtcttgagggtttggcacgacatctatttggtggggtggaaatgcgctgggttgacacttacttcccctttactaatccatcatttgaactggagatatattttcaggatcaatggatggaagttttgggttgtggagtgacagaacaagaaatattgaaaagaagcggtaaaacagacaatgttgcttgggcatttgggcttggattggagcgcttggctatggttttatttgatattccagatattcgactgttctggtcaactgatgagcggttcacttctcaattttctagcggccggctcgggttgaagtttaagccattttccaagtatccaccttgttataaagatatgagtttctggatcagtgattcatttaccgagaacaatctctgtgaagttgttagaggaattgctggagaccttgccgaggaggtgaaactgatagacaacttcaccaataagaaaggaatgacaagtcattgctatcggatagcttatcggtccatggaacgttcacttacagacgaggaaataaacgatctgcagtggaaagtgagagaacaggtggagaacaagttaaaggttgtcctaagatgagctattttcatttgtttgtttttttctgattttgtagtttacaacatgtagtttttacctgaattttgttttacatttatatgtcacttttttttgcaccatcttgattgtaataatagaatatgcttatttgctgtcatttggagttttgaggccaatatgttgaggcaatagatgaaggttgattgtattggaataattagtatcaaaagtgaaaccattctttttttggttcttccccctagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="7715" stop="3906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7415" g_stop="7357" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6795" g_stop="6719" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="136" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6718" i_stop="6238" i_length="481">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6237" g_stop="6058" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="316" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6057" i_stop="5917" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5916" g_stop="5872" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="361" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5871" i_stop="5648" i_length="224">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5647" g_stop="5543" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="466" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5542" i_stop="4695" i_length="848">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4694" g_stop="4581" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="580" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4580" i_stop="4504" i_length="77">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4503" g_stop="4216" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="869" r_length="289" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="878" polyA_stop="894"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E735123" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7415" e_stop="7357"/>
          <exon e_start="6795" e_stop="6719"/>
          <exon e_start="6237" e_stop="6058"/>
          <exon e_start="5916" e_stop="5872"/>
          <exon e_start="5647" e_stop="5543"/>
          <exon e_start="4694" e_stop="4581"/>
          <exon e_start="4503" e_stop="4216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTGGTATAAATCTGTCTCATCTAAATGAGTCATTATGATGCCAATAATTTACCATATAATTTATGGCATTGCTAATCAATAACGAGTCTTGGTGATTTGACTATGATTTAGTGATTTACCATATTCATATCTATAGGTGACTTCCTTACATCATTAGGAGTTGGTCCTAGAGGCCACTTAGTAATTGTTCATATCATCTTTAGAAGTTTAGTGCGGTGATGGTTGTACATTGTATAAATCTTTCTTGCTTCTTTCAATTTTCTTTAAAGAATAGGTGTCTCAATTAGAAGTTAGAACCTGATTTTAGGGCAGATAGTAATAGAAGGCTGGACCAGAGTGCAGACTGCTAAATAATAGGTTGAAGTTACTTTAAGAAGTTAAGAATGCCTATCGAAGTTCTTATCTGATGGTATAATGTAGTTGATGGCTCCCCTTATATTCCGGTCCATCGTGTATAGATCTTTTAACTTGTTCTCTTCTTCAAAAACTATCTTTCTACTAGAAGATTTACTTTTTCGTGAGAAAGATTTATGAATCTCCAGCCTAATCTTTCTAATTCTTCAGGTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAGGTATACTTTGCATTAGTTTATGACAGACTTATACATCCTTTTGTTTCTTCTATTTCCTCCTCTCCAGATGTCGAAGTCCAGAATACTGTGCGAGTTAGTTTTGTGGTTTCATCAGATTGTTCAATAAGATACTATCAAATGTGTAGCAGAGTAAGATTGTATCACCTACTTAAACAATTTCTTTTACTGTGGCTCAAGAGTGTCAAGCATGCGTTAGACGCTCACATCATATGCCAACCTCTAATGTTCAGTCAATAAGTGGATTTCTTCGGGAAAAACAGAAAGCAGGAAGATTAAGGATGTGTGTCGGCAAGGACTATAGGGAACAATAGCCAAACATTCAGGAAGAAGATAATATAATAACAAAAGCAGTAATCATCATTTCTTGGATTAGAGCGCTTGGCTATGGTTTTATTTGATACACCATATAATAATAACTATGCCGTATATTATGTTCTACTCAATGTTAAGTCCTTTACAGGATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAGTAATTTCTTCATCTTTCCTGTTTTCATTTTTCACCTTGTTCTGAATTTTCAGCTACTTCTTCCCACCACTCTCTCCCCTTTTTTTATCACCAGTTCAGATTTTGCTAGCTTTCGGTAACATTTTCTTGATCATGATGTAGTTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAGGTAGGACTTGTTTACTAATGTTTATCTTATGTAATTTTCAAGCATTTGAATAATCCAACTCTTATATGTGTTTTGAGCATTTCATTTTTCATTAAGTGCTTAACATTTTGTTTGAAGAATGCACTCAAGGGGTCCATTTGAGTCTTTGACTGCATAATCATGTTTGTGGATCTTTTAGTGTTTATGATCTTGTTTAAAAGACTCAAACTCCTTAATTTTTGCAGTATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAGGTATGTCCACGTGATGGTTCTACTTACCGCCAAATTCAACTAATAGATATGAGGGGCCCTTCATTAATGTGTTGTGTTACAAGTTTCTGGTGGAATAGATGAGATGCACCTCAAGCTGGTTCGGACACTATTGTTGAAAAGAAAAGTTAACTTTTAATCTATTTTGTTGGGGACACATCTACTGTTAGGATTGTATTGAGGGGCATTCACACTTGTGCAATGATCATTAAACATTCTGCTTACAGGAGCTCCATACCTCCACAGAAATGGTGATTGCTGGCCCCAACACCACAGTTATTACAAAAAATAATCAAGAGATAAAGGATCTAGTTTTCGCTTTGAACTTCTCTCGTTTAATGGTCCATGGATATACCCCAATATTTGAATTCTTGAGTGTCTTTTCCACATTATTCTGCTAGTTTTCCCAGTTATTTGAAATGTTTCCTCTTACTCGACCAGTTTTATGGGCCTATTCATTGGTATCATTAGTTCATTTCTCCAAAGTAAGCTATTCCGAGTCTTGCACTTTATCTTAAGATTTATGTTAAGTGATTTCCATGTCATACCCTGGGGTTAGAGCTGAGTGACGTTTTTCCTAGTGAAGCCAAACACCACAGATTTGTACAATTTTACAGTAGGTTTATAGGGTCGTGTTTGTAACATGAGCTTGTGTGGTAACTAACTCTGATATATAAGTGGAGAAGGGTAGAGAGGCATACCCACTCATCCTCTGACCCAAAGAGTCGGCTCTAGACTGATTTCTCAGTCATCATGTAGTTCGTGTAGTGACTCGTGTTAGTAACATGAATTCGTCTAGTGACTGTTGCTTCCGTTTCTACTACTGTCAGGTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCACTTACAGACGAGGAAATAAACGATCTGCAGGTAACCCCTCTTTCAAATGAACCTCTGCCATCTTTCTCCTACCATTACTAAATGTCTTTTTGTGTATTTAAATGCAGTGGAAAGTGAGAGAACAGGTGGAGAACAAGTTAAAGGTTGTCCTAAGATGAGCTATTTTCATTTGTTTGTTTTTTTCTGATTTTGTAGTTTACAACATGTAGTTTTTACCTGAATTTTGTTTTACATTTATATGTCACTTTTTTTTGCACCATCTTGATTGTAATAATAGAATATGCTTATTTGCTGTCATTTGGAGTTTTGAGGCCAATATGTTGAGGCAATAGATGAAGGTTGATTGTATTGGAATAATTAGTATCAAAAGTGAAACCATTC-TATTTTGGTTCTTC</genome_strand>
        <mrna_strand>GTCTCATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA.............................................................................................................................................TTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAG................................................................................................................................................................................................................................TATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCACTTACAGACGAGGAAATAAACGATCTGCAG.............................................................................TGGAAAGTGAGAGAACAGGTGGAGAACAAGTTAAAGGTTGTCCTAAGATGAGCTATTTTCATTTGTTTGTTTTTTTCTGATTTTGTAGTTTACAACATGTAGTTTTTACCTGAATTTTGTTTTACATTTATATGTCACTTTTTTTTGCACCATCTTGATTGTAATAATAGAATATGCTTATTTGCTGTCATTTGGAGTTTTGAGGCCAATATGTTGAGGCAATAGATGAAGGTTGATTGTATTGGAATAATTAGTATCAAAAGTGAAACCATTCTTTTTTTGGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354618" ref_strand="+" ref_description="SGN-E354618 [cTOS-17-L23]">
      <seq>tgaagtttaagccattttccaagtatccaccttgttataaagatatgagtttctggatcagtgattcatttaccgagaacaatctctgtgaagttgttagaggaattgctggagaccttgccgaggaggtgaaactgatagacaacttcaccaataagaaaggaatgacaagtcattgctatcggatagcttatcggtccatggaacgttcacttacagacgaggaaataaacgatctgcagtggaaagtgagagaacaggtggagaacaagttaaaggttgtcctaagatgagctattttcatttgtttgtttttttctgattttgtagtttacaacatgtagtttttacctgaattttgttttacatttatatgtcacttttttttgcaccatcttgattgtaataatagaatatgcttatttgctgtcatttggagttttgaggccaatatgttgaggcaatagatgaaggttgattgtattggaataattagtatcaaaagtgaaaccattctatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="6194" stop="3925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5894" g_stop="5872" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5871" i_stop="5648" i_length="224">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5647" g_stop="5543" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="128" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5542" i_stop="4695" i_length="848">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4694" g_stop="4581" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="242" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4580" i_stop="4504" i_length="77">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4503" g_stop="4222" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="524" r_length="282" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E354618" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5894" e_stop="5872"/>
          <exon e_start="5647" e_stop="5543"/>
          <exon e_start="4694" e_stop="4581"/>
          <exon e_start="4503" e_stop="4222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTTAAGCCATTTTCCAAGGTAGGACTTGTTTACTAATGTTTATCTTATGTAATTTTCAAGCATTTGAATAATCCAACTCTTATATGTGTTTTGAGCATTTCATTTTTCATTAAGTGCTTAACATTTTGTTTGAAGAATGCACTCAAGGGGTCCATTTGAGTCTTTGACTGCATAATCATGTTTGTGGATCTTTTAGTGTTTATGATCTTGTTTAAAAGACTCAAACTCCTTAATTTTTGCAGTATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAGGTATGTCCACGTGATGGTTCTACTTACCGCCAAATTCAACTAATAGATATGAGGGGCCCTTCATTAATGTGTTGTGTTACAAGTTTCTGGTGGAATAGATGAGATGCACCTCAAGCTGGTTCGGACACTATTGTTGAAAAGAAAAGTTAACTTTTAATCTATTTTGTTGGGGACACATCTACTGTTAGGATTGTATTGAGGGGCATTCACACTTGTGCAATGATCATTAAACATTCTGCTTACAGGAGCTCCATACCTCCACAGAAATGGTGATTGCTGGCCCCAACACCACAGTTATTACAAAAAATAATCAAGAGATAAAGGATCTAGTTTTCGCTTTGAACTTCTCTCGTTTAATGGTCCATGGATATACCCCAATATTTGAATTCTTGAGTGTCTTTTCCACATTATTCTGCTAGTTTTCCCAGTTATTTGAAATGTTTCCTCTTACTCGACCAGTTTTATGGGCCTATTCATTGGTATCATTAGTTCATTTCTCCAAAGTAAGCTATTCCGAGTCTTGCACTTTATCTTAAGATTTATGTTAAGTGATTTCCATGTCATACCCTGGGGTTAGAGCTGAGTGACGTTTTTCCTAGTGAAGCCAAACACCACAGATTTGTACAATTTTACAGTAGGTTTATAGGGTCGTGTTTGTAACATGAGCTTGTGTGGTAACTAACTCTGATATATAAGTGGAGAAGGGTAGAGAGGCATACCCACTCATCCTCTGACCCAAAGAGTCGGCTCTAGACTGATTTCTCAGTCATCATGTAGTTCGTGTAGTGACTCGTGTTAGTAACATGAATTCGTCTAGTGACTGTTGCTTCCGTTTCTACTACTGTCAGGTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCACTTACAGACGAGGAAATAAACGATCTGCAGGTAACCCCTCTTTCAAATGAACCTCTGCCATCTTTCTCCTACCATTACTAAATGTCTTTTTGTGTATTTAAATGCAGTGGAAAGTGAGAGAACAGGTGGAGAACAAGTTAAAGGTTGTCCTAAGATGAGCTATTTTCATTTGTTTGTTTTTTTCTGATTTTGTAGTTTACAACATGTAGTTTTTACCTGAATTTTGTTTTACATTTATATGTCACTTTTTTTTGCACCATCTTGATTGTAATAATAGAATATGCTTATTTGCTGTCATTTGGAGTTTTGAGGCCAATATGTTGAGGCAATAGATGAAGGTTGATTGTATTGGAATAATTAGTATCAAAAGTGAAACCATTCTATTTTGG</genome_strand>
        <mrna_strand>TGAAGTTTAAGCCATTTTCCAAG................................................................................................................................................................................................................................TATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCACTTACAGACGAGGAAATAAACGATCTGCAG.............................................................................TGGAAAGTGAGAGAACAGGTGGAGAACAAGTTAAAGGTTGTCCTAAGATGAGCTATTTTCATTTGTTTGTTTTTTTCTGATTTTGTAGTTTACAACATGTAGTTTTTACCTGAATTTTGTTTTACATTTATATGTCACTTTTTTTTGCACCATCTTGATTGTAATAATAGAATATGCTTATTTGCTGTCATTTGGAGTTTTGAGGCCAATATGTTGAGGCAATAGATGAAGGTTGATTGTATTGGAATAATTAGTATCAAAAGTGAAACCATTCTATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352199" ref_strand="+" ref_description="SGN-E352199 [cTOS-13-B9]">
      <seq>tgaagtttaagccattttccaagtatccaccttgttataaagatatgagtttctggatcagtgattcatttaccgagaacaatctctgtgaagttgttagaggaattgctggagaccttgccgaggaggtgaaactgatagacaacttcaccaataagaaaggaatgacaagtcattgctatcggatagcttatcggtccatggaacgttcacttacagacgaggaaataaacgatctgcagtggaaagtgagagaacaggtggagaacaagttaaaggttgtcctaagatgagctattttcatttgtttgtttttttctgattttgtagtttacaacatgtagtttttacctgaattttgttttacatttatatgtcacttttttttgcaccatcttgattgtaataatagaatatgcttatttgctgtcatttggagttttgaggccaatatgttgaggcaatagatgaaggttgattgtattggaataattagtatcaaaagtgaaaccattctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="6194" stop="3925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5894" g_stop="5872" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5871" i_stop="5648" i_length="224">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5647" g_stop="5543" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="128" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5542" i_stop="4695" i_length="848">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4694" g_stop="4581" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="242" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4580" i_stop="4504" i_length="77">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4503" g_stop="4225" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="521" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E352199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5894" e_stop="5872"/>
          <exon e_start="5647" e_stop="5543"/>
          <exon e_start="4694" e_stop="4581"/>
          <exon e_start="4503" e_stop="4225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTTAAGCCATTTTCCAAGGTAGGACTTGTTTACTAATGTTTATCTTATGTAATTTTCAAGCATTTGAATAATCCAACTCTTATATGTGTTTTGAGCATTTCATTTTTCATTAAGTGCTTAACATTTTGTTTGAAGAATGCACTCAAGGGGTCCATTTGAGTCTTTGACTGCATAATCATGTTTGTGGATCTTTTAGTGTTTATGATCTTGTTTAAAAGACTCAAACTCCTTAATTTTTGCAGTATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAGGTATGTCCACGTGATGGTTCTACTTACCGCCAAATTCAACTAATAGATATGAGGGGCCCTTCATTAATGTGTTGTGTTACAAGTTTCTGGTGGAATAGATGAGATGCACCTCAAGCTGGTTCGGACACTATTGTTGAAAAGAAAAGTTAACTTTTAATCTATTTTGTTGGGGACACATCTACTGTTAGGATTGTATTGAGGGGCATTCACACTTGTGCAATGATCATTAAACATTCTGCTTACAGGAGCTCCATACCTCCACAGAAATGGTGATTGCTGGCCCCAACACCACAGTTATTACAAAAAATAATCAAGAGATAAAGGATCTAGTTTTCGCTTTGAACTTCTCTCGTTTAATGGTCCATGGATATACCCCAATATTTGAATTCTTGAGTGTCTTTTCCACATTATTCTGCTAGTTTTCCCAGTTATTTGAAATGTTTCCTCTTACTCGACCAGTTTTATGGGCCTATTCATTGGTATCATTAGTTCATTTCTCCAAAGTAAGCTATTCCGAGTCTTGCACTTTATCTTAAGATTTATGTTAAGTGATTTCCATGTCATACCCTGGGGTTAGAGCTGAGTGACGTTTTTCCTAGTGAAGCCAAACACCACAGATTTGTACAATTTTACAGTAGGTTTATAGGGTCGTGTTTGTAACATGAGCTTGTGTGGTAACTAACTCTGATATATAAGTGGAGAAGGGTAGAGAGGCATACCCACTCATCCTCTGACCCAAAGAGTCGGCTCTAGACTGATTTCTCAGTCATCATGTAGTTCGTGTAGTGACTCGTGTTAGTAACATGAATTCGTCTAGTGACTGTTGCTTCCGTTTCTACTACTGTCAGGTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCACTTACAGACGAGGAAATAAACGATCTGCAGGTAACCCCTCTTTCAAATGAACCTCTGCCATCTTTCTCCTACCATTACTAAATGTCTTTTTGTGTATTTAAATGCAGTGGAAAGTGAGAGAACAGGTGGAGAACAAGTTAAAGGTTGTCCTAAGATGAGCTATTTTCATTTGTTTGTTTTTTTCTGATTTTGTAGTTTACAACATGTAGTTTTTACCTGAATTTTGTTTTACATTTATATGTCACTTTTTTTTGCACCATCTTGATTGTAATAATAGAATATGCTTATTTGCTGTCATTTGGAGTTTTGAGGCCAATATGTTGAGGCAATAGATGAAGGTTGATTGTATTGGAATAATTAGTATCAAAAGTGAAACCATTCTATTT</genome_strand>
        <mrna_strand>TGAAGTTTAAGCCATTTTCCAAG................................................................................................................................................................................................................................TATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCACTTACAGACGAGGAAATAAACGATCTGCAG.............................................................................TGGAAAGTGAGAGAACAGGTGGAGAACAAGTTAAAGGTTGTCCTAAGATGAGCTATTTTCATTTGTTTGTTTTTTTCTGATTTTGTAGTTTACAACATGTAGTTTTTACCTGAATTTTGTTTTACATTTATATGTCACTTTTTTTTGCACCATCTTGATTGTAATAATAGAATATGCTTATTTGCTGTCATTTGGAGTTTTGAGGCCAATATGTTGAGGCAATAGATGAAGGTTGATTGTATTGGAATAATTAGTATCAAAAGTGAAACCATTCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370944" ref_strand="+" ref_description="SGN-E370944 [TUS-27-N3](-)">
      <seq>tttcaggatcaatggatggaagttttgggttgtggagtgacagaacaagaaatattaaaaagaagcggtaaaacagacaatgttgcttgggcatttgggcttggattggagcgcttggctatggttttatttgatattccagatattcgactgttctggtcaactgatgagcggttcacttctcaattttctagcggccggctcgggttgaagtttaagccattttccaagtatccaccttgttataaaaatatgagtttttggatcagtgattcatttaccgagaacaatctctgtgaagttgttaaaggaattgctggagaccttgccgaggaggtgaaactgatagacaacttcaccaataagaaaggaatgacaagtcattgctatcggatagcttatcggtccatggaacgttcacttacagacgaggaaataaacgatctgcagtggaaagtgagagaacaggtggagaacaagttaaaggttgtcctaaaatgagctattttcatttgtttgtttttttctgattttgtagtttacaacatgtagtttttacctgaattttgttttacatttatatgtcacttttttttgcaccatcttgattgtaataatagaatatgcttatttgctgtcatttggagttttgaggccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="6544" stop="3993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6243" g_stop="6058" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6057" i_stop="5917" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5916" g_stop="5872" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="231" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5871" i_stop="5648" i_length="224">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5647" g_stop="5543" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="336" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5542" i_stop="4695" i_length="848">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4694" g_stop="4581" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="450" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4580" i_stop="4504" i_length="77">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4503" g_stop="4296" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="658" r_length="208" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="659" polyA_stop="679"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E370944" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6243" e_stop="6058"/>
          <exon e_start="5916" e_stop="5872"/>
          <exon e_start="5647" e_stop="5543"/>
          <exon e_start="4694" e_stop="4581"/>
          <exon e_start="4503" e_stop="4296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGGATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAGTAATTTCTTCATCTTTCCTGTTTTCATTTTTCACCTTGTTCTGAATTTTCAGCTACTTCTTCCCACCACTCTCTCCCCTTTTTTTATCACCAGTTCAGATTTTGCTAGCTTTCGGTAACATTTTCTTGATCATGATGTAGTTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAGGTAGGACTTGTTTACTAATGTTTATCTTATGTAATTTTCAAGCATTTGAATAATCCAACTCTTATATGTGTTTTGAGCATTTCATTTTTCATTAAGTGCTTAACATTTTGTTTGAAGAATGCACTCAAGGGGTCCATTTGAGTCTTTGACTGCATAATCATGTTTGTGGATCTTTTAGTGTTTATGATCTTGTTTAAAAGACTCAAACTCCTTAATTTTTGCAGTATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAGGTATGTCCACGTGATGGTTCTACTTACCGCCAAATTCAACTAATAGATATGAGGGGCCCTTCATTAATGTGTTGTGTTACAAGTTTCTGGTGGAATAGATGAGATGCACCTCAAGCTGGTTCGGACACTATTGTTGAAAAGAAAAGTTAACTTTTAATCTATTTTGTTGGGGACACATCTACTGTTAGGATTGTATTGAGGGGCATTCACACTTGTGCAATGATCATTAAACATTCTGCTTACAGGAGCTCCATACCTCCACAGAAATGGTGATTGCTGGCCCCAACACCACAGTTATTACAAAAAATAATCAAGAGATAAAGGATCTAGTTTTCGCTTTGAACTTCTCTCGTTTAATGGTCCATGGATATACCCCAATATTTGAATTCTTGAGTGTCTTTTCCACATTATTCTGCTAGTTTTCCCAGTTATTTGAAATGTTTCCTCTTACTCGACCAGTTTTATGGGCCTATTCATTGGTATCATTAGTTCATTTCTCCAAAGTAAGCTATTCCGAGTCTTGCACTTTATCTTAAGATTTATGTTAAGTGATTTCCATGTCATACCCTGGGGTTAGAGCTGAGTGACGTTTTTCCTAGTGAAGCCAAACACCACAGATTTGTACAATTTTACAGTAGGTTTATAGGGTCGTGTTTGTAACATGAGCTTGTGTGGTAACTAACTCTGATATATAAGTGGAGAAGGGTAGAGAGGCATACCCACTCATCCTCTGACCCAAAGAGTCGGCTCTAGACTGATTTCTCAGTCATCATGTAGTTCGTGTAGTGACTCGTGTTAGTAACATGAATTCGTCTAGTGACTGTTGCTTCCGTTTCTACTACTGTCAGGTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCACTTACAGACGAGGAAATAAACGATCTGCAGGTAACCCCTCTTTCAAATGAACCTCTGCCATCTTTCTCCTACCATTACTAAATGTCTTTTTGTGTATTTAAATGCAGTGGAAAGTGAGAGAACAGGTGGAGAACAAGTTAAAGGTTGTCCTAAGATGAGCTATTTTCATTTGTTTGTTTTTTTCTGATTTTGTAGTTTACAACATGTAGTTTTTACCTGAATTTTGTTTTACATTTATATGTCACTTTTTTTTGCACCATCTTGATTGTAATAATAGAATATGCTTATTTGCTGTCATTTGGAGTTTTGAGGCCA</genome_strand>
        <mrna_strand>TTTCAGGATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTAAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA.............................................................................................................................................TTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAG................................................................................................................................................................................................................................TATCCACCTTGTTATAAAAATATGAGTTTTTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAAAGGAATTGCTGGAGACCTTGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCACTTACAGACGAGGAAATAAACGATCTGCAG.............................................................................TGGAAAGTGAGAGAACAGGTGGAGAACAAGTTAAAGGTTGTCCTAAAATGAGCTATTTTCATTTGTTTGTTTTTTTCTGATTTTGTAGTTTACAACATGTAGTTTTTACCTGAATTTTGTTTTACATTTATATGTCACTTTTTTTTGCACCATCTTGATTGTAATAATAGAATATGCTTATTTGCTGTCATTTGGAGTTTTGAGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244642" ref_strand="+" ref_description="SGN-E244642 [cLED-38-A19]">
      <seq>gagggttcaggtactgatgcaacgtcacatgctgcggaagatcttaagaaatgtcttgagggtttggcacgacatctatttggtggggtggaaatgcgctgggttgacacttacttcccctttactaatccatcatttgaactggagatatattttcaggatcaatggatggaagttttgggttgtggagtgacagaacaagaaatattgaaaagaagcggtaaaacagacaatgttgcttgggcatttgggcttggattggagcgcttggctatggttttatttgatattccagatattcgactgttctggtcaactgatgagcggttcacttctcaattttctagcggccggctcgggttgaagtttaagccattttccaagtgtccaccttgttataaagatatgagtttctggatcagtgattcatttaccgagaacaatctctgtgaagttgttagaggaattgctggagaccttgccgaggaggtgaaactgatagacaacttcaccaataagaaaggaatgacaagtcattgctatcggatagcttatcggtccatggaacgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="7738" stop="4311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7438" g_stop="7357" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6795" g_stop="6719" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="159" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6718" i_stop="6238" i_length="481">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6237" g_stop="6058" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="339" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6057" i_stop="5917" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5916" g_stop="5872" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="384" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5871" i_stop="5648" i_length="224">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5647" g_stop="5543" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="489" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5542" i_stop="4695" i_length="848">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4694" g_stop="4611" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="573" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E244642" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7438" e_stop="7357"/>
          <exon e_start="6795" e_stop="6719"/>
          <exon e_start="6237" e_stop="6058"/>
          <exon e_start="5916" e_stop="5872"/>
          <exon e_start="5647" e_stop="5543"/>
          <exon e_start="4694" e_stop="4611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTGGTATAAATCTGTCTCATCTAAATGAGTCATTATGATGCCAATAATTTACCATATAATTTATGGCATTGCTAATCAATAACGAGTCTTGGTGATTTGACTATGATTTAGTGATTTACCATATTCATATCTATAGGTGACTTCCTTACATCATTAGGAGTTGGTCCTAGAGGCCACTTAGTAATTGTTCATATCATCTTTAGAAGTTTAGTGCGGTGATGGTTGTACATTGTATAAATCTTTCTTGCTTCTTTCAATTTTCTTTAAAGAATAGGTGTCTCAATTAGAAGTTAGAACCTGATTTTAGGGCAGATAGTAATAGAAGGCTGGACCAGAGTGCAGACTGCTAAATAATAGGTTGAAGTTACTTTAAGAAGTTAAGAATGCCTATCGAAGTTCTTATCTGATGGTATAATGTAGTTGATGGCTCCCCTTATATTCCGGTCCATCGTGTATAGATCTTTTAACTTGTTCTCTTCTTCAAAAACTATCTTTCTACTAGAAGATTTACTTTTTCGTGAGAAAGATTTATGAATCTCCAGCCTAATCTTTCTAATTCTTCAGGTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAGGTATACTTTGCATTAGTTTATGACAGACTTATACATCCTTTTGTTTCTTCTATTTCCTCCTCTCCAGATGTCGAAGTCCAGAATACTGTGCGAGTTAGTTTTGTGGTTTCATCAGATTGTTCAATAAGATACTATCAAATGTGTAGCAGAGTAAGATTGTATCACCTACTTAAACAATTTCTTTTACTGTGGCTCAAGAGTGTCAAGCATGCGTTAGACGCTCACATCATATGCCAACCTCTAATGTTCAGTCAATAAGTGGATTTCTTCGGGAAAAACAGAAAGCAGGAAGATTAAGGATGTGTGTCGGCAAGGACTATAGGGAACAATAGCCAAACATTCAGGAAGAAGATAATATAATAACAAAAGCAGTAATCATCATTTCTTGGATTAGAGCGCTTGGCTATGGTTTTATTTGATACACCATATAATAATAACTATGCCGTATATTATGTTCTACTCAATGTTAAGTCCTTTACAGGATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAGTAATTTCTTCATCTTTCCTGTTTTCATTTTTCACCTTGTTCTGAATTTTCAGCTACTTCTTCCCACCACTCTCTCCCCTTTTTTTATCACCAGTTCAGATTTTGCTAGCTTTCGGTAACATTTTCTTGATCATGATGTAGTTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAGGTAGGACTTGTTTACTAATGTTTATCTTATGTAATTTTCAAGCATTTGAATAATCCAACTCTTATATGTGTTTTGAGCATTTCATTTTTCATTAAGTGCTTAACATTTTGTTTGAAGAATGCACTCAAGGGGTCCATTTGAGTCTTTGACTGCATAATCATGTTTGTGGATCTTTTAGTGTTTATGATCTTGTTTAAAAGACTCAAACTCCTTAATTTTTGCAGTATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAGGTATGTCCACGTGATGGTTCTACTTACCGCCAAATTCAACTAATAGATATGAGGGGCCCTTCATTAATGTGTTGTGTTACAAGTTTCTGGTGGAATAGATGAGATGCACCTCAAGCTGGTTCGGACACTATTGTTGAAAAGAAAAGTTAACTTTTAATCTATTTTGTTGGGGACACATCTACTGTTAGGATTGTATTGAGGGGCATTCACACTTGTGCAATGATCATTAAACATTCTGCTTACAGGAGCTCCATACCTCCACAGAAATGGTGATTGCTGGCCCCAACACCACAGTTATTACAAAAAATAATCAAGAGATAAAGGATCTAGTTTTCGCTTTGAACTTCTCTCGTTTAATGGTCCATGGATATACCCCAATATTTGAATTCTTGAGTGTCTTTTCCACATTATTCTGCTAGTTTTCCCAGTTATTTGAAATGTTTCCTCTTACTCGACCAGTTTTATGGGCCTATTCATTGGTATCATTAGTTCATTTCTCCAAAGTAAGCTATTCCGAGTCTTGCACTTTATCTTAAGATTTATGTTAAGTGATTTCCATGTCATACCCTGGGGTTAGAGCTGAGTGACGTTTTTCCTAGTGAAGCCAAACACCACAGATTTGTACAATTTTACAGTAGGTTTATAGGGTCGTGTTTGTAACATGAGCTTGTGTGGTAACTAACTCTGATATATAAGTGGAGAAGGGTAGAGAGGCATACCCACTCATCCTCTGACCCAAAGAGTCGGCTCTAGACTGATTTCTCAGTCATCATGTAGTTCGTGTAGTGACTCGTGTTAGTAACATGAATTCGTCTAGTGACTGTTGCTTCCGTTTCTACTACTGTCAGGTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCA</genome_strand>
        <mrna_strand>GAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA.............................................................................................................................................TTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAG................................................................................................................................................................................................................................TGTCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704659" ref_strand="+" ref_description="SGN-E704659 [FA24DF07]">
      <seq>gctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccattttcttgttactggcgatgtgtaccgtagagattccattgactcaactcactatcctgtattccatcagatggagggtgtacgggtctttgctccaaatgattgggagggttcaggtactgatgcaacgtcacatgctgcggaagatcttaagaaatgtcttgagggtttggcacgacatctatttggtggggtggaaatgcgctgggttgacacttacttcccctttactaatccatcatttgaactggagatatattttcaggatcaatggatggaagttttgggttgtggagtgacagaacaagaaatattgaaaagaagcggtaaaacagacaatgttgcttgggcatttgggcttggattggagcgcttggctatggttttatttgatattccagatattcgactgttctggtcaactgatgagcggttcacttctcaattttctagcggccggctcgggttgaagtttaagccattttccaagtatccaccttgttataaagatatgagtttctggatcagtgattcatttaccgagaacaatctctgtgaagttgttagaggaattgctggagaccttgccgaggaggtgaaactgatagacaacttcaccaataagaaaggaatgacaagtcattgctatcggatagcttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="8045" stop="4328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7745" g_stop="7563" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7474" g_stop="7357" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="301" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6795" g_stop="6719" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="378" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6718" i_stop="6238" i_length="481">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6237" g_stop="6058" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="558" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6057" i_stop="5917" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5916" g_stop="5872" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="603" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5871" i_stop="5648" i_length="224">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5647" g_stop="5543" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="708" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5542" i_stop="4695" i_length="848">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4694" g_stop="4628" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="775" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E704659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7745" e_stop="7563"/>
          <exon e_start="7474" e_stop="7357"/>
          <exon e_start="6795" e_stop="6719"/>
          <exon e_start="6237" e_stop="6058"/>
          <exon e_start="5916" e_stop="5872"/>
          <exon e_start="5647" e_stop="5543"/>
          <exon e_start="4694" e_stop="4628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAGGTTCTCTACCTGCAAACATATTTTTCTCTTGACATTGCAGATTGTTGTGTGGATTTATCCTTTAATGGTTTTCTTCCATACTTTGTAGATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTGGTATAAATCTGTCTCATCTAAATGAGTCATTATGATGCCAATAATTTACCATATAATTTATGGCATTGCTAATCAATAACGAGTCTTGGTGATTTGACTATGATTTAGTGATTTACCATATTCATATCTATAGGTGACTTCCTTACATCATTAGGAGTTGGTCCTAGAGGCCACTTAGTAATTGTTCATATCATCTTTAGAAGTTTAGTGCGGTGATGGTTGTACATTGTATAAATCTTTCTTGCTTCTTTCAATTTTCTTTAAAGAATAGGTGTCTCAATTAGAAGTTAGAACCTGATTTTAGGGCAGATAGTAATAGAAGGCTGGACCAGAGTGCAGACTGCTAAATAATAGGTTGAAGTTACTTTAAGAAGTTAAGAATGCCTATCGAAGTTCTTATCTGATGGTATAATGTAGTTGATGGCTCCCCTTATATTCCGGTCCATCGTGTATAGATCTTTTAACTTGTTCTCTTCTTCAAAAACTATCTTTCTACTAGAAGATTTACTTTTTCGTGAGAAAGATTTATGAATCTCCAGCCTAATCTTTCTAATTCTTCAGGTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAGGTATACTTTGCATTAGTTTATGACAGACTTATACATCCTTTTGTTTCTTCTATTTCCTCCTCTCCAGATGTCGAAGTCCAGAATACTGTGCGAGTTAGTTTTGTGGTTTCATCAGATTGTTCAATAAGATACTATCAAATGTGTAGCAGAGTAAGATTGTATCACCTACTTAAACAATTTCTTTTACTGTGGCTCAAGAGTGTCAAGCATGCGTTAGACGCTCACATCATATGCCAACCTCTAATGTTCAGTCAATAAGTGGATTTCTTCGGGAAAAACAGAAAGCAGGAAGATTAAGGATGTGTGTCGGCAAGGACTATAGGGAACAATAGCCAAACATTCAGGAAGAAGATAATATAATAACAAAAGCAGTAATCATCATTTCTTGGATTAGAGCGCTTGGCTATGGTTTTATTTGATACACCATATAATAATAACTATGCCGTATATTATGTTCTACTCAATGTTAAGTCCTTTACAGGATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAGTAATTTCTTCATCTTTCCTGTTTTCATTTTTCACCTTGTTCTGAATTTTCAGCTACTTCTTCCCACCACTCTCTCCCCTTTTTTTATCACCAGTTCAGATTTTGCTAGCTTTCGGTAACATTTTCTTGATCATGATGTAGTTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAGGTAGGACTTGTTTACTAATGTTTATCTTATGTAATTTTCAAGCATTTGAATAATCCAACTCTTATATGTGTTTTGAGCATTTCATTTTTCATTAAGTGCTTAACATTTTGTTTGAAGAATGCACTCAAGGGGTCCATTTGAGTCTTTGACTGCATAATCATGTTTGTGGATCTTTTAGTGTTTATGATCTTGTTTAAAAGACTCAAACTCCTTAATTTTTGCAGTATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAGGTATGTCCACGTGATGGTTCTACTTACCGCCAAATTCAACTAATAGATATGAGGGGCCCTTCATTAATGTGTTGTGTTACAAGTTTCTGGTGGAATAGATGAGATGCACCTCAAGCTGGTTCGGACACTATTGTTGAAAAGAAAAGTTAACTTTTAATCTATTTTGTTGGGGACACATCTACTGTTAGGATTGTATTGAGGGGCATTCACACTTGTGCAATGATCATTAAACATTCTGCTTACAGGAGCTCCATACCTCCACAGAAATGGTGATTGCTGGCCCCAACACCACAGTTATTACAAAAAATAATCAAGAGATAAAGGATCTAGTTTTCGCTTTGAACTTCTCTCGTTTAATGGTCCATGGATATACCCCAATATTTGAATTCTTGAGTGTCTTTTCCACATTATTCTGCTAGTTTTCCCAGTTATTTGAAATGTTTCCTCTTACTCGACCAGTTTTATGGGCCTATTCATTGGTATCATTAGTTCATTTCTCCAAAGTAAGCTATTCCGAGTCTTGCACTTTATCTTAAGATTTATGTTAAGTGATTTCCATGTCATACCCTGGGGTTAGAGCTGAGTGACGTTTTTCCTAGTGAAGCCAAACACCACAGATTTGTACAATTTTACAGTAGGTTTATAGGGTCGTGTTTGTAACATGAGCTTGTGTGGTAACTAACTCTGATATATAAGTGGAGAAGGGTAGAGAGGCATACCCACTCATCCTCTGACCCAAAGAGTCGGCTCTAGACTGATTTCTCAGTCATCATGTAGTTCGTGTAGTGACTCGTGTTAGTAACATGAATTCGTCTAGTGACTGTTGCTTCCGTTTCTACTACTGTCAGGTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATC</genome_strand>
        <mrna_strand>GCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG........................................................................................ATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA.............................................................................................................................................TTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAG................................................................................................................................................................................................................................TATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241444" ref_strand="+" ref_description="SGN-E241444 [cLED-28-C3]">
      <seq>gagggttcaggtactgatgcaacgtcacatgctgcggaagatcttaagaaatgtcttgagggtttggcacgacatctatttggtggggtggaaatgcgctgggttgacacttacttcccctttactaatccatcatttgaactggagatatattttcaggatcaatggatggaagttttgggttgtggagtgacagaacaagaaatattgaaaagaagcggtaaaacagacaatgttgcttgggcatttgggcttggattggagcgcttggctatggttttatttgatattccagatattcgactgttctggtcaactgatgagcggttcacttctcaattttctagcggccggctcgggttgaagtttaagccattttccaagtatccaccttgttataaagatatgagtttctggatcagtgattcatttaccgagaacaatctctgtgaagttgttagaggaattgctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="7738" stop="5257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7438" g_stop="7357" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6795" g_stop="6719" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="159" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6718" i_stop="6238" i_length="481">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6237" g_stop="6058" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="339" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6057" i_stop="5917" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5916" g_stop="5872" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="384" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5871" i_stop="5648" i_length="224">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5647" g_stop="5557" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="475" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E241444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7438" e_stop="7357"/>
          <exon e_start="6795" e_stop="6719"/>
          <exon e_start="6237" e_stop="6058"/>
          <exon e_start="5916" e_stop="5872"/>
          <exon e_start="5647" e_stop="5557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTGGTATAAATCTGTCTCATCTAAATGAGTCATTATGATGCCAATAATTTACCATATAATTTATGGCATTGCTAATCAATAACGAGTCTTGGTGATTTGACTATGATTTAGTGATTTACCATATTCATATCTATAGGTGACTTCCTTACATCATTAGGAGTTGGTCCTAGAGGCCACTTAGTAATTGTTCATATCATCTTTAGAAGTTTAGTGCGGTGATGGTTGTACATTGTATAAATCTTTCTTGCTTCTTTCAATTTTCTTTAAAGAATAGGTGTCTCAATTAGAAGTTAGAACCTGATTTTAGGGCAGATAGTAATAGAAGGCTGGACCAGAGTGCAGACTGCTAAATAATAGGTTGAAGTTACTTTAAGAAGTTAAGAATGCCTATCGAAGTTCTTATCTGATGGTATAATGTAGTTGATGGCTCCCCTTATATTCCGGTCCATCGTGTATAGATCTTTTAACTTGTTCTCTTCTTCAAAAACTATCTTTCTACTAGAAGATTTACTTTTTCGTGAGAAAGATTTATGAATCTCCAGCCTAATCTTTCTAATTCTTCAGGTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAGGTATACTTTGCATTAGTTTATGACAGACTTATACATCCTTTTGTTTCTTCTATTTCCTCCTCTCCAGATGTCGAAGTCCAGAATACTGTGCGAGTTAGTTTTGTGGTTTCATCAGATTGTTCAATAAGATACTATCAAATGTGTAGCAGAGTAAGATTGTATCACCTACTTAAACAATTTCTTTTACTGTGGCTCAAGAGTGTCAAGCATGCGTTAGACGCTCACATCATATGCCAACCTCTAATGTTCAGTCAATAAGTGGATTTCTTCGGGAAAAACAGAAAGCAGGAAGATTAAGGATGTGTGTCGGCAAGGACTATAGGGAACAATAGCCAAACATTCAGGAAGAAGATAATATAATAACAAAAGCAGTAATCATCATTTCTTGGATTAGAGCGCTTGGCTATGGTTTTATTTGATACACCATATAATAATAACTATGCCGTATATTATGTTCTACTCAATGTTAAGTCCTTTACAGGATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAAGTAATTTCTTCATCTTTCCTGTTTTCATTTTTCACCTTGTTCTGAATTTTCAGCTACTTCTTCCCACCACTCTCTCCCCTTTTTTTATCACCAGTTCAGATTTTGCTAGCTTTCGGTAACATTTTCTTGATCATGATGTAGTTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAGGTAGGACTTGTTTACTAATGTTTATCTTATGTAATTTTCAAGCATTTGAATAATCCAACTCTTATATGTGTTTTGAGCATTTCATTTTTCATTAAGTGCTTAACATTTTGTTTGAAGAATGCACTCAAGGGGTCCATTTGAGTCTTTGACTGCATAATCATGTTTGTGGATCTTTTAGTGTTTATGATCTTGTTTAAAAGACTCAAACTCCTTAATTTTTGCAGTATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAG</genome_strand>
        <mrna_strand>GAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA.............................................................................................................................................TTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAG................................................................................................................................................................................................................................TATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370945" ref_strand="+" ref_description="SGN-E370945 [TUS-27-N3]">
      <seq>cttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccattttcttgttactggcgatgtgtaccgtagagattccattgactcaactcactatcctgtattccatcagatggagggtgtacgggtctttgctccaaatgattgggagggttcaggtactgatgcaacgtcacatgctgcggaagatcttaagaaatgtcttgagggtttggcacgacatctatttggtggggtggaaatgcgctgggttgacacttacttcccctttactaatccatcatttgaactggagatatattttcaggatcaatggatggaagttttgggttgtggagtgacagaacaagatatattgaaaagaagcggtaaaacagacaatgttgctttggcatttgggcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="8894" stop="5839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8594" g_stop="8469" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7769" g_stop="7563" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="333" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7474" g_stop="7357" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="451" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6795" g_stop="6719" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="528" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6718" i_stop="6238" i_length="481">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6237" g_stop="6139" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="627" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E370945" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8594" e_stop="8469"/>
          <exon e_start="7769" e_stop="7563"/>
          <exon e_start="7474" e_stop="7357"/>
          <exon e_start="6795" e_stop="6719"/>
          <exon e_start="6237" e_stop="6139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAGGTTCTCTACCTGCAAACATATTTTTCTCTTGACATTGCAGATTGTTGTGTGGATTTATCCTTTAATGGTTTTCTTCCATACTTTGTAGATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTGGTATAAATCTGTCTCATCTAAATGAGTCATTATGATGCCAATAATTTACCATATAATTTATGGCATTGCTAATCAATAACGAGTCTTGGTGATTTGACTATGATTTAGTGATTTACCATATTCATATCTATAGGTGACTTCCTTACATCATTAGGAGTTGGTCCTAGAGGCCACTTAGTAATTGTTCATATCATCTTTAGAAGTTTAGTGCGGTGATGGTTGTACATTGTATAAATCTTTCTTGCTTCTTTCAATTTTCTTTAAAGAATAGGTGTCTCAATTAGAAGTTAGAACCTGATTTTAGGGCAGATAGTAATAGAAGGCTGGACCAGAGTGCAGACTGCTAAATAATAGGTTGAAGTTACTTTAAGAAGTTAAGAATGCCTATCGAAGTTCTTATCTGATGGTATAATGTAGTTGATGGCTCCCCTTATATTCCGGTCCATCGTGTATAGATCTTTTAACTTGTTCTCTTCTTCAAAAACTATCTTTCTACTAGAAGATTTACTTTTTCGTGAGAAAGATTTATGAATCTCCAGCCTAATCTTTCTAATTCTTCAGGTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAGGTATACTTTGCATTAGTTTATGACAGACTTATACATCCTTTTGTTTCTTCTATTTCCTCCTCTCCAGATGTCGAAGTCCAGAATACTGTGCGAGTTAGTTTTGTGGTTTCATCAGATTGTTCAATAAGATACTATCAAATGTGTAGCAGAGTAAGATTGTATCACCTACTTAAACAATTTCTTTTACTGTGGCTCAAGAGTGTCAAGCATGCGTTAGACGCTCACATCATATGCCAACCTCTAATGTTCAGTCAATAAGTGGATTTCTTCGGGAAAAACAGAAAGCAGGAAGATTAAGGATGTGTGTCGGCAAGGACTATAGGGAACAATAGCCAAACATTCAGGAAGAAGATAATATAATAACAAAAGCAGTAATCATCATTTCTTGGATTAGAGCGCTTGGCTATGGTTTTATTTGATACACCATATAATAATAACTATGCCGTATATTATGTTCTACTCAATGTTAAGTCCTTTACAGGATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGA</genome_strand>
        <mrna_strand>CTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG........................................................................................ATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGATATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTTGGCATTTGGGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271285" ref_strand="+" ref_description="SGN-E271285 [cLEM-5-J7]">
      <seq>cttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccattttcttgttactggcgatgtgtaccgtagagattccattgactcaactcactatcctgtattccatcagatggagggtgtacgggtctttgctccaaatgattgggagggttcaggtactgatgcaacgtcacatgctgcggaagatcttaagaaatgtcttgagggtttggcacgacatctatttggtggggtggaaatgcgctgggttgacacttacttcccctttactaatccatcatttgaactggagatatattttcaggatcaatggatggaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="8894" stop="5918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8594" g_stop="8469" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7769" g_stop="7563" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="333" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7474" g_stop="7357" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="451" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6795" g_stop="6719" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="528" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6718" i_stop="6238" i_length="481">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6237" g_stop="6218" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="548" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E271285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8594" e_stop="8469"/>
          <exon e_start="7769" e_stop="7563"/>
          <exon e_start="7474" e_stop="7357"/>
          <exon e_start="6795" e_stop="6719"/>
          <exon e_start="6237" e_stop="6218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAGGTTCTCTACCTGCAAACATATTTTTCTCTTGACATTGCAGATTGTTGTGTGGATTTATCCTTTAATGGTTTTCTTCCATACTTTGTAGATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTGGTATAAATCTGTCTCATCTAAATGAGTCATTATGATGCCAATAATTTACCATATAATTTATGGCATTGCTAATCAATAACGAGTCTTGGTGATTTGACTATGATTTAGTGATTTACCATATTCATATCTATAGGTGACTTCCTTACATCATTAGGAGTTGGTCCTAGAGGCCACTTAGTAATTGTTCATATCATCTTTAGAAGTTTAGTGCGGTGATGGTTGTACATTGTATAAATCTTTCTTGCTTCTTTCAATTTTCTTTAAAGAATAGGTGTCTCAATTAGAAGTTAGAACCTGATTTTAGGGCAGATAGTAATAGAAGGCTGGACCAGAGTGCAGACTGCTAAATAATAGGTTGAAGTTACTTTAAGAAGTTAAGAATGCCTATCGAAGTTCTTATCTGATGGTATAATGTAGTTGATGGCTCCCCTTATATTCCGGTCCATCGTGTATAGATCTTTTAACTTGTTCTCTTCTTCAAAAACTATCTTTCTACTAGAAGATTTACTTTTTCGTGAGAAAGATTTATGAATCTCCAGCCTAATCTTTCTAATTCTTCAGGTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAGGTATACTTTGCATTAGTTTATGACAGACTTATACATCCTTTTGTTTCTTCTATTTCCTCCTCTCCAGATGTCGAAGTCCAGAATACTGTGCGAGTTAGTTTTGTGGTTTCATCAGATTGTTCAATAAGATACTATCAAATGTGTAGCAGAGTAAGATTGTATCACCTACTTAAACAATTTCTTTTACTGTGGCTCAAGAGTGTCAAGCATGCGTTAGACGCTCACATCATATGCCAACCTCTAATGTTCAGTCAATAAGTGGATTTCTTCGGGAAAAACAGAAAGCAGGAAGATTAAGGATGTGTGTCGGCAAGGACTATAGGGAACAATAGCCAAACATTCAGGAAGAAGATAATATAATAACAAAAGCAGTAATCATCATTTCTTGGATTAGAGCGCTTGGCTATGGTTTTATTTGATACACCATATAATAATAACTATGCCGTATATTATGTTCTACTCAATGTTAAGTCCTTTACAGGATCAATGGATGGAAGTTTT</genome_strand>
        <mrna_strand>CTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG........................................................................................ATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATGGATGGAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705582" ref_strand="+" ref_description="SGN-E705582 [FA27CC06]">
      <seq>cggcgccactcactagagaggctgagcaaatttgcaatggctctttcattagctaaatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccattttcttgttactggcgatgtgtaccgtagagattccattgactcaactcactatcctgtattccatcagatggagggtgtacgggtctttgctccaaatgattgggagggttcaggtactgatgcaacgtcacatgctgcggaagatcttaagaaatgtcttgagggtttggcacgacatctatttggtggggtggaaatgcgctgggttgacacttacttcccctttactaatccatcatttggactggagatatattttcaggatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11281" stop="6412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10981" g_stop="10727" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="444" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7563" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="651" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7474" g_stop="7357" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="769" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6795" g_stop="6719" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="846" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E705582" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10981" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7563"/>
          <exon e_start="7474" e_stop="7357"/>
          <exon e_start="6795" e_stop="6719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGCCACTCACTAGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAGGTTCTCTACCTGCAAACATATTTTTCTCTTGACATTGCAGATTGTTGTGTGGATTTATCCTTTAATGGTTTTCTTCCATACTTTGTAGATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTGGTATAAATCTGTCTCATCTAAATGAGTCATTATGATGCCAATAATTTACCATATAATTTATGGCATTGCTAATCAATAACGAGTCTTGGTGATTTGACTATGATTTAGTGATTTACCATATTCATATCTATAGGTGACTTCCTTACATCATTAGGAGTTGGTCCTAGAGGCCACTTAGTAATTGTTCATATCATCTTTAGAAGTTTAGTGCGGTGATGGTTGTACATTGTATAAATCTTTCTTGCTTCTTTCAATTTTCTTTAAAGAATAGGTGTCTCAATTAGAAGTTAGAACCTGATTTTAGGGCAGATAGTAATAGAAGGCTGGACCAGAGTGCAGACTGCTAAATAATAGGTTGAAGTTACTTTAAGAAGTTAAGAATGCCTATCGAAGTTCTTATCTGATGGTATAATGTAGTTGATGGCTCCCCTTATATTCCGGTCCATCGTGTATAGATCTTTTAACTTGTTCTCTTCTTCAAAAACTATCTTTCTACTAGAAGATTTACTTTTTCGTGAGAAAGATTTATGAATCTCCAGCCTAATCTTTCTAATTCTTCAGGTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAG</genome_strand>
        <mrna_strand>CGGCGCCACTCACTAGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG........................................................................................ATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGGACTGGAGATATATTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320454" ref_strand="+" ref_description="SGN-E320454 [cTOB-22-P9]">
      <seq>gctctttcattagctaaatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaataggaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcagactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccattttcttgttactggcgatgtgtaccgtagagattccattgactcaactcactatcctgtattccatcagatggagggtgtacgggtctttgctccaatgattgggagggttcacgtactgatgcaacgtcacatgctgcggaagatcttaagaaatgtcttgagggtttggcacgacatctatttggntggggtggaaatgcgctgggatgacacttacttnccctttactaatccatcatttgaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11242" stop="6433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10942" g_stop="10727" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="405" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7563" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="612" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7474" g_stop="7357" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="729" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6795" g_stop="6733" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="793" r_length="64" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E320454" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10942" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7563"/>
          <exon e_start="7474" e_stop="7357"/>
          <exon e_start="6795" e_stop="6733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAGGTTCTCTACCTGCAAACATATTTTTCTCTTGACATTGCAGATTGTTGTGTGGATTTATCCTTTAATGGTTTTCTTCCATACTTTGTAGATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTGGTATAAATCTGTCTCATCTAAATGAGTCATTATGATGCCAATAATTTACCATATAATTTATGGCATTGCTAATCAATAACGAGTCTTGGTGATTTGACTATGATTTAGTGATTTACCATATTCATATCTATAGGTGACTTCCTTACATCATTAGGAGTTGGTCCTAGAGGCCACTTAGTAATTGTTCATATCATCTTTAGAAGTTTAGTGCGGTGATGGTTGTACATTGTATAAATCTTTCTTGCTTCTTTCAATTTTCTTTAAAGAATAGGTGTCTCAATTAGAAGTTAGAACCTGATTTTAGGGCAGATAGTAATAGAAGGCTGGACCAGAGTGCAGACTGCTAAATAATAGGTTGAAGTTACTTTAAGAAGTTAAGAATGCCTATCGAAGTTCTTATCTGATGGTATAATGTAGTTGATGGCTCCCCTTATATTCCGGTCCATCGTGTATAGATCTTTTAACTTGTTCTCTTCTTCAAAAACTATCTTTCTACTAGAAGATTTACTTTTTCGTGAGAAAGATTTATGAATCTCCAGCCTAATCTTTCTAATTCTTCAGG-TGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGG</genome_strand>
        <mrna_strand>GCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGGAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAGACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG........................................................................................ATGGAGGGTGTACGGGTCTTTGCTCC-AATGATTGGGAGGGTTCACGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GNTGGGGTGGAAATGCGCTGGGATGACACTTACTTNCCCTTTACTAATCCATCATTTGAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318049" ref_strand="+" ref_description="SGN-E318049 [cTOA-29-A17]">
      <seq>ctgagcaaatttgcaatggctctttcattagctaaatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccattttcttgttactggcgatgtgtaccgtagagattccattgactcaactcactatcctgtattccatcagatggagggtgtacgggtctttgctccaatgattgggagggttcaggtactgatgcaacgtcacatgctgcggaagatcttaaagaatgtcttganggtttgggcacgacatctatttggtggggtggaaatgcgctgggttgacacttacttcccctttactatccatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11260" stop="6443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10960" g_stop="10727" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="423" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7563" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="630" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7474" g_stop="7357" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="748" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6795" g_stop="6743" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="800" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E318049" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10960" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7563"/>
          <exon e_start="7474" e_stop="7357"/>
          <exon e_start="6795" e_stop="6743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAGGTTCTCTACCTGCAAACATATTTTTCTCTTGACATTGCAGATTGTTGTGTGGATTTATCCTTTAATGGTTTTCTTCCATACTTTGTAGATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTT-GGCACGACATCTATTTGGTATAAATCTGTCTCATCTAAATGAGTCATTATGATGCCAATAATTTACCATATAATTTATGGCATTGCTAATCAATAACGAGTCTTGGTGATTTGACTATGATTTAGTGATTTACCATATTCATATCTATAGGTGACTTCCTTACATCATTAGGAGTTGGTCCTAGAGGCCACTTAGTAATTGTTCATATCATCTTTAGAAGTTTAGTGCGGTGATGGTTGTACATTGTATAAATCTTTCTTGCTTCTTTCAATTTTCTTTAAAGAATAGGTGTCTCAATTAGAAGTTAGAACCTGATTTTAGGGCAGATAGTAATAGAAGGCTGGACCAGAGTGCAGACTGCTAAATAATAGGTTGAAGTTACTTTAAGAAGTTAAGAATGCCTATCGAAGTTCTTATCTGATGGTATAATGTAGTTGATGGCTCCCCTTATATTCCGGTCCATCGTGTATAGATCTTTTAACTTGTTCTCTTCTTCAAAAACTATCTTTCTACTAGAAGATTTACTTTTTCGTGAGAAAGATTTATGAATCTCCAGCCTAATCTTTCTAATTCTTCAGGTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCA</genome_strand>
        <mrna_strand>CTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG........................................................................................ATGGAGGGTGTACGGGTCTTTGCTCC-AATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAAGAATGTCTTGANGGTTTGGGCACGACATCTATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACT-ATCCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728314" ref_strand="+" ref_description="SGN-E728314 [LA17BF07]">
      <seq>gctatatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttgaaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccattttcttgttactggcgatgtgtaccgtagagattccattgactcaactcactatcctgtattccatcagatggagggtgtacgggtctttgctccaaatgattgggagggttcaggtactgatgcaacgtcacatgctgcggaagatcttaagaaatgtcttgagggtttggcacgacatctatttggtggggtggaaatgcgctgggttgacacttactttcccctttactaatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11230" stop="6446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10930" g_stop="10727" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="393" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7563" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="600" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7474" g_stop="7357" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="718" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6795" g_stop="6746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="769" r_length="51" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E728314" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10930" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7563"/>
          <exon e_start="7474" e_stop="7357"/>
          <exon e_start="6795" e_stop="6746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAGGTTCTCTACCTGCAAACATATTTTTCTCTTGACATTGCAGATTGTTGTGTGGATTTATCCTTTAATGGTTTTCTTCCATACTTTGTAGATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTGGTATAAATCTGTCTCATCTAAATGAGTCATTATGATGCCAATAATTTACCATATAATTTATGGCATTGCTAATCAATAACGAGTCTTGGTGATTTGACTATGATTTAGTGATTTACCATATTCATATCTATAGGTGACTTCCTTACATCATTAGGAGTTGGTCCTAGAGGCCACTTAGTAATTGTTCATATCATCTTTAGAAGTTTAGTGCGGTGATGGTTGTACATTGTATAAATCTTTCTTGCTTCTTTCAATTTTCTTTAAAGAATAGGTGTCTCAATTAGAAGTTAGAACCTGATTTTAGGGCAGATAGTAATAGAAGGCTGGACCAGAGTGCAGACTGCTAAATAATAGGTTGAAGTTACTTTAAGAAGTTAAGAATGCCTATCGAAGTTCTTATCTGATGGTATAATGTAGTTGATGGCTCCCCTTATATTCCGGTCCATCGTGTATAGATCTTTTAACTTGTTCTCTTCTTCAAAAACTATCTTTCTACTAGAAGATTTACTTTTTCGTGAGAAAGATTTATGAATCTCCAGCCTAATCTTTCTAATTCTTCAGGTGGGGTGGAAATGCGCTGGGTTGACACTTAC-TTCCCCTTTACTAATCCA</genome_strand>
        <mrna_strand>GCTATATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGAAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG........................................................................................ATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGTGGAAATGCGCTGGGTTGACACTTACTTTCCCCTTTACTAATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728443" ref_strand="+" ref_description="SGN-E728443 [LA17DD04]">
      <seq>gctaaatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccattttcttgttactggcgatgtgtaccgtagagattccattgactcaactcactatcctgtattccatcagatggagggtgtacgggtctttgctccaatgattgggagggttcaggtactgatgcaacgtcacatgctgcggaagatctaaagaaatgtcttgagggtttggcacgacatctatttggtggggtggaaatgcgctgggttgacactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11230" stop="6465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10930" g_stop="10727" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="393" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7563" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="600" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7474" g_stop="7357" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="717" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6795" g_stop="6765" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="748" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E728443" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10930" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7563"/>
          <exon e_start="7474" e_stop="7357"/>
          <exon e_start="6795" e_stop="6765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAGGTTCTCTACCTGCAAACATATTTTTCTCTTGACATTGCAGATTGTTGTGTGGATTTATCCTTTAATGGTTTTCTTCCATACTTTGTAGATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTGGTATAAATCTGTCTCATCTAAATGAGTCATTATGATGCCAATAATTTACCATATAATTTATGGCATTGCTAATCAATAACGAGTCTTGGTGATTTGACTATGATTTAGTGATTTACCATATTCATATCTATAGGTGACTTCCTTACATCATTAGGAGTTGGTCCTAGAGGCCACTTAGTAATTGTTCATATCATCTTTAGAAGTTTAGTGCGGTGATGGTTGTACATTGTATAAATCTTTCTTGCTTCTTTCAATTTTCTTTAAAGAATAGGTGTCTCAATTAGAAGTTAGAACCTGATTTTAGGGCAGATAGTAATAGAAGGCTGGACCAGAGTGCAGACTGCTAAATAATAGGTTGAAGTTACTTTAAGAAGTTAAGAATGCCTATCGAAGTTCTTATCTGATGGTATAATGTAGTTGATGGCTCCCCTTATATTCCGGTCCATCGTGTATAGATCTTTTAACTTGTTCTCTTCTTCAAAAACTATCTTTCTACTAGAAGATTTACTTTTTCGTGAGAAAGATTTATGAATCTCCAGCCTAATCTTTCTAATTCTTCAGGTGGGGTGGAAATGCGCTGGGTTGACACTTA</genome_strand>
        <mrna_strand>GCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG........................................................................................ATGGAGGGTGTACGGGTCTTTGCTCC-AATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTAAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGTGGAAATGCGCTGGGTTGACACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348069" ref_strand="+" ref_description="SGN-E348069 [cTOF-31-H11]">
      <seq>tttcattagctaaatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccattttcttgttacctggcgatgtgtaccgtagagattccattgactcaactcactatcctgtattccatcagatggagggtgtaccgggtctttgctccaaatgattgggaggggttcaggtactgatgcaacgtcacatgctgcgggaagatcttaagaaatgtctnngagggtttggcacgacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11238" stop="7061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10938" g_stop="10727" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="401" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7563" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="609" r_length="208" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7474" g_stop="7361" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="727" r_length="118" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E348069" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10938" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7563"/>
          <exon e_start="7474" e_stop="7361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTA-CTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAGGTTCTCTACCTGCAAACATATTTTTCTCTTGACATTGCAGATTGTTGTGTGGATTTATCCTTTAATGGTTTTCTTCCATACTTTGTAGATGGAGGGTGTA-CGGGTCTTTGCTCCAAATGATTGGGA-GGGTTCAGGTACTGATGCAACGTCACATGCTGC-GGAAGATCTTAAGAAATGTCT-TGAGGGTTTGGCACGACATCTA</genome_strand>
        <mrna_strand>TTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACCTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG........................................................................................ATGGAGGGTGTACCGGGTCTTTGCTCCAAATGATTGGGAGGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGGAAGATCTTAAGAAATGTCTNNGAGGGTTTGGCACGACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315586" ref_strand="+" ref_description="SGN-E315586 [cTOA-22-K6]">
      <seq>actagagaggctgagcaaatttgcaatggctctttcattagctaaatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccattttcttgttactggcgatgtgtaccgtagagattccattgactcaactcactatcctgtattccatcagatggagggtgtacgggtctttgctccaatgattgggagggttcaggtactgatgcaacgtcacatgctgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11270" stop="7101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10970" g_stop="10727" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="433" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7563" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="640" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7474" g_stop="7401" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="713" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E315586" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10970" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7563"/>
          <exon e_start="7474" e_stop="7401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAGGTTCTCTACCTGCAAACATATTTTTCTCTTGACATTGCAGATTGTTGTGTGGATTTATCCTTTAATGGTTTTCTTCCATACTTTGTAGATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGA</genome_strand>
        <mrna_strand>ACTAGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG........................................................................................ATGGAGGGTGTACGGGTCTTTGCTCC-AATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729246" ref_strand="+" ref_description="SGN-E729246 [LA20BH01]">
      <seq>aatggctctttcattagctaaatccactttcttctctatccccacttcatattgtccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccattttcttgttactggcgaatgtgtaccgtagagattccattgactcaactcactatcctgtattccatcagatggagggtgtacgggtctttgctccaaatgattgggagggttnangtactgatgcaacgtcacatgctgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11246" stop="7101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10946" g_stop="10727" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="410" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7563" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="618" r_length="208" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7474" g_stop="7401" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="692" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E729246" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10946" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7563"/>
          <exon e_start="7474" e_stop="7401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATT-TCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCG-ATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAGGTTCTCTACCTGCAAACATATTTTTCTCTTGACATTGCAGATTGTTGTGTGGATTTATCCTTTAATGGTTTTCTTCCATACTTTGTAGATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGA</genome_strand>
        <mrna_strand>AATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTATCCCCACTTCATATTGTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGAATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG........................................................................................ATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTNANGTACTGATGCAACGTCACATGCTGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322704" ref_strand="+" ref_description="SGN-E322704 [cTOB-26-N17]">
      <seq>gctctttcattagctaaatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgangaatggacacacccattttcttgttactggcgatgtgtaccgtaaagattcattgactncactcactatcctgtattcatcagatggagggtgtacnggtctttgctccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11242" stop="7261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10942" g_stop="10727" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="405" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7563" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="610" r_length="205" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7474" g_stop="7446" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="639" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E322704" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10942" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7563"/>
          <exon e_start="7474" e_stop="7446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAGGTTCTCTACCTGCAAACATATTTTTCTCTTGACATTGCAGATTGTTGTGTGGATTTATCCTTTAATGGTTTTCTTCCATACTTTGTAGATGGAGGGTGTACGGGTCTTTGCTCCAAA</genome_strand>
        <mrna_strand>GCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGANGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAAAGATT-CATTGACTNCACTCACTATCCTGTATT-CATCAG........................................................................................ATGGAGGGTGTACNGGTCTTTGCTCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347977" ref_strand="+" ref_description="SGN-E347977 [cTOF-31-J10]">
      <seq>tttgcaatggctctttcattagctaaatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccatttttcttgtactgggcgatgtgtaccgtagagattccattgactcaactcactatcctgtattccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11251" stop="7265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10951" g_stop="10727" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="414" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7565" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="620" r_length="206" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E347977" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10951" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCA-TTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATC</genome_strand>
        <mrna_strand>TTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTTCTTGTACTGGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312714" ref_strand="+" ref_description="SGN-E312714 [cTOA-8-K7]">
      <seq>tttcattagctaaatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctactgaggaatggacacacccattttcttgttactggcgatgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11238" stop="7309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10938" g_stop="10727" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="401" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7609" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="562" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E312714" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10938" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTA</genome_strand>
        <mrna_strand>TTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200479" ref_strand="+" ref_description="SGN-E200479 [cLEB-8-B16]">
      <seq>gcacgaggagaggctgagcaaatttgcaatggctctttcattagctaaatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11271" stop="7351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10972" g_stop="10727" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="436" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7651" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="555" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E200479" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10972" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTA-GAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACT</genome_strand>
        <mrna_strand>GCACGAGGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322216" ref_strand="+" ref_description="SGN-E322216 [cTOB-24-N7]">
      <seq>gctctttcattagctaaatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactgtcctaaggtgccacacaagtgcacatcaagctgagctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11242" stop="7351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10942" g_stop="10727" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="405" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7651" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="524" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E322216" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10942" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACT</genome_strand>
        <mrna_strand>GCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257823" ref_strand="+" ref_description="SGN-E257823 [cLEG-39-E22]">
      <seq>caatggctctttcattagctaaatccactttcttctctaatcccactccatatatccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgttccctgctttccatggattccatgggcacaagatgaggcaatcatcagtaacagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacagaactttgatgaagttttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11247" stop="7391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10947" g_stop="10727" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="410" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7691" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="489" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E257823" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10947" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTG</genome_strand>
        <mrna_strand>CAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTCCATATATCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTCCCTGCTTTCCATGGATTCCATGGGCACAAGATGAGGCAATCATCAGTAACAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366642" ref_strand="+" ref_description="SGN-E366642 [cLPT-17-M3]">
      <seq>tcactggagaggctgagcaaatttgcaatggctctttcattagctaaatccactttcttctctaatcccacttcgtatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccacggtcacaagaagaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaataatattccagatacaatatttgcaaagcttggaatgcagcttcataggagaaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttacacagaactttgatgaagtcttggtacctgctgatcacattagcaggagttacaatgacacatattatgtggattctcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11272" stop="7392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10972" g_stop="10727" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8469" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="435" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699">
            <donor d_prob="0.863" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7769" g_stop="7692" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="513" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E366642" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10972" e_stop="10727"/>
          <exon e_start="8659" e_stop="8469"/>
          <exon e_start="7769" e_stop="7692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTAGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGAGTTATATTGAAGAAACCGTTAGAATCATCAAGTTTCTCAATGATAGGTTGAAATACTATTCAGTATGTCTACTTCTTTCAGTTGCTTGATTTACATTTCTTAATCGTGTTATTACATGTTCTATGTAGAATAGGTAGAATAGCTCAATGATTGTATCAAACTGGAAATAAATTTATCAGTGGATTAAGAATCGGAAAAGCTTTTTTGAAACAGAACTCATTTGTTAATGGGATATTCATAAACCGCACTTGGGATGTGTTTTCCCTTTTGTTCATGTATCCTGGTAAGAGTTTTCAGTAACTTTGCCTTCTTCTTACTACGACTTGTGGGTTCCTACCTGCAGAACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACT</genome_strand>
        <mrna_strand>TCACTGGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCGTATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCACGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAATAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGAAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTACACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATGAAGTCTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244994" ref_strand="+" ref_description="SGN-E244994 [cLEF-2-B20]">
      <seq>agaggcaatcatcagtagtagcctctgctctcgatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaactatccagataagtttgacaagtttgatgatttgtgcccaatagtttctgttagacaggttggtccaagaaggttaaggaatcttttttttttgcactcttcatgattttgttttttgtaattatatttgctttctgtgttcgaattatgttcctttctccattgatcaagcatatttctttattcataatttcatatagctggcattaacatctgtttaatttgcagtgaagttagggtcctaacaaaccattcattttggccttttcatggggttcctaatattctgttgagtaatgaattatactcttctactcctgaaaaccttattctattagctctaaggtcaacaatatttattccccatcaattatgagtcaggcatgtcaaccattcagccactaacctatacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11089" stop="7813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10789" g_stop="10727" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8113" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="611" r_length="548" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E244994" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10789" e_stop="10727"/>
          <exon e_start="8659" e_stop="8113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATA-TTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGA</genome_strand>
        <mrna_strand>AGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTAATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291893" ref_strand="+" ref_description="SGN-E291893 [cLET-7-J6]">
      <seq>tctattgactcttgatagagtttcaataaccggcgccactcactagagaggctgagcaaatttgcaatggctctttcattagctaaatccactttcttctctaatcccacttcatatttccccaagaatggcattcgaagctttggatttcttgttcctttctcctctttttctacttcttctccgtttcctgcagtagatggagtccatggtcacaagaagaggcaatcatcagtagtagcctctgctctctatcttggtggagtcaagatttcaaaagatgaaatagtaagggatgaccccacaaacaatattccagatacaatatttgcaaagcttggaatgcagcttcataggaggaaccaacatccacttggtatccttaagaatgcgatctatgattattttgacacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="11311" stop="8226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11011" g_stop="10727" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8659" g_stop="8526" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="417" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E291893" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11011" e_stop="10727"/>
          <exon e_start="8659" e_stop="8526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTGACTCTTGATAGAGTTTCAATAACCGGCGCCACTCACTAGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATGGTCAGTTTACTTATGTTTCTCTTTTTCTATGTGTATTGACTTTGGTTTTCATTTTACATGATGTGGGGTTTGTAAAGTTTGAGTTTTTATGACTGTAGACTGTTGAATTTTCATCTGGGTTGGTTAATTGGGTCCAAATGGAGAAGAATTGATATTGAGGATTCGGATATGTACTTTGGACTAAGTAGCTTAGTGTAATAGCTTTTGGATAGTTTATGAAATGGTATTTTGTAGTTACCTCCCCATTAGAGGCTATCAAAGTTTGCATTTTTTATGATTGTGAGTAGAAATTTATCCTCTAATTATGGGTCCAAATGAAGCAGAATTGGTATTGAGGATTTGGATAGTGTACTTTGGACTAAGTAGCTAGTGCAATAGCTTTTGGGTAGTTTATGAAATGGTATTTTGTAGTTACCTTCCCATTGGAGACTTTTAAAGTTCGCATTTTTATGATTGTGAGTTGAAATTTATCCTCTAATTATGGTCCGAATGAAGCAGAATTGGTATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGGATTGAGACATATTTTTTATAGTAATTGCTTCTCGGTCGTTTATGAAATGGTATTTATAGTTACCTCCTCATTGGACAGTATTAAATTTTGCATTTTTATGATCGTGGACTCGAATTTCTCTTCTAATTATGGGTCCAAATGAAGCAGGATTGAGATTGAGGATTTGTATAGCCGTCTTTGAACTAGTTTGGAATTTCTTTTGACAAATGTAACAAGTTTGTATATAAATCTTCAGCACTAAGGCTTGGGATCCCAAGAATTTACATCACAGACCTACATACAACTGAGTAGGCTCAGCAACCCAAAATAGAAAACCTATCTCTAGGTCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATTGCTACATGATCATCTATATACTCCGAACTACACCAATAGCAAACAATGATAGTGAAGTCCATTTTAATCCTATGCAAAGGACTACTGATACTTCCATAACATCTTGAATTTCTCTCCTTCCAAATGGTCCACCGTACCACTGTTTGGGACAATTCTCCAGCTGTTTTTGTCTGCTCCATAGTTGGCTAACCACTTTAGTCTGGGATTTCAAAGGATGGTCAGTTACTTAAATAGCATAACAAGCTTTCTGCCCTCTCTGTATTGTTTCAGTTTTCATTACCATGAATCGGGTTTGTAAAGTTCGAGTTTTTTTGAGTGTAGAATCTAAAATTTTCATCTGGGTCTGTCTGATTGGGTCCAAATGGAACATAATTGATAATTTGATACTGAGGATTTGTTCAGCAAACATTAAGCTAGTTTGGAATTGATGCATATTAGTTTTTGTAACAGATTGTGGGTCGATTATGAAATGGTATTTTGTTGTTACTTTCCCATTCAAGGTTATTAAAGTTTGCCTTTTTATGATTGTGGAATCGAACTTCTCCTGTGGGTTGGTCTATTTGGGTCGAAATGGAGCAGGATTGATATTGAAGATTTGTGTAGCCGACTTTGAACTAGTTTGTATTGAGTGGAGTAGTTGTAGTAATAGCTACTGGATTGTTTATGAAATGGTATTTTGTAGTTAGCTCTCCATTGGAGTCTCTGCTCTCGAGCTTGGTGGATTCAAGATTTCCAAGTATAGGAAAGTGCACATTTGTGCTGAAAAAATTATCTATTCTTCCCATTTTCCTATGTACAAAACAAGGTTCAAGTTTGTTCCCTTTTTCGTGTTCTATCATAGTTTGGTCCTCCGGGGCCAACAGAAAGCTCTTGGATATACGAAGGCAAGGAGCCAAAGTCAAGTATTATTATGTCTTACCTGTATATTTCTCCTTTTTTCTTTTGTTGTGTTTTTTTAAAAATTGCAATTCTGTAAGTCCAGACAGTTTCTATTCACTTATAACTGTGGCCTTATGCTTATCCATTGTGTTTTGTGGGTAAAAAATGTTTTGATTTATTTTTAGTTTGACATCTGTATTGCCTTGGTGGAGCTTTTAACATAGAGAATTTTGTTCTATCATCTGGTAATTGGTACTAACCTGATGATTGCATATACAGAAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAAC</genome_strand>
        <mrna_strand>TCTATTGACTCTTGATAGAGTTTCAATAACCGGCGCCACTCACTAGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCT-CT-TTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCTATCTTGGTGGAGTCAAGATTTCAAAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313397" ref_strand="+" ref_description="SGN-E313397 [cTOA-13-M17]">
      <seq>ctgtgattgacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12011" stop="14279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12311" g_stop="12686" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="13979" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="525" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E313397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12311" e_stop="12686"/>
          <exon e_start="13831" e_stop="13979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAAT</genome_strand>
        <mrna_strand>CTGTGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270270" ref_strand="+" ref_description="SGN-E270270 [cLEM-1-K23]">
      <seq>gggtgattgacaatgaattccgcatcaatttccagcatagagtgcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12013" stop="12973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12311" g_stop="12673" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E270270" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12311" e_stop="12673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTC</genome_strand>
        <mrna_strand>GGGTGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTGCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747431" ref_strand="+" ref_description="SGN-E747431 [GI|47104531]">
      <seq>tgattgacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgttatgcaacaacaagcagtcaacttccttctcgtaaaggtgatttctcatcaaacagcaatgagtatggtgttcaacccggcatccaagctgatagagtgcagaggactcaaatacccgagaatcctgttgaggtattgatacctgaggtgtatgacagattttctggtgagggtaagaaaggaaatttctcaatggcctggtctcggaaattgagagtcaagattactggaaaagatggatttgaaaaactagatatcagaattcctgctggatttttggaaggaatcacaaacatagttccagctttggtaggtgtaaacatcaagtctctgttggatgaggcaactttagaagagggtgggaaacaattgttggattttcaggatacaatgggtgacaggatacaagttattttggagtaaaggagatcttgcttcttattcctgtattttgatgaatgaatattatatggcaaatgatgtacaatccctagcttagcttggcccctcagatttggtctaaatggaagagcataatgcatatgaaataatgtgtgggttaagcgcatgttacaaaagagtatggtattgttttctgcatgtaatcccctaaaatattgatcaataatataatttagttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12014" stop="19852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12314" g_stop="12686" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14042" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="585" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="867" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="868" r_stop="990" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17594" g_stop="17744" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="991" r_stop="1141" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17869" g_stop="18098" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1142" r_stop="1371" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18099" i_stop="19070" i_length="972">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19071" g_stop="19107" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1372" r_stop="1408" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19211" g_stop="19553" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1409" r_stop="1751" r_length="343" r_score="0.994"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19554" i_stop="19661" i_length="108">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="19662" g_stop="19670" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1752" r_stop="1760" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E747431" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12314" e_stop="12686"/>
          <exon e_start="13831" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17744"/>
          <exon e_start="17869" e_stop="18098"/>
          <exon e_start="19071" e_stop="19107"/>
          <exon e_start="19211" e_stop="19553"/>
          <exon e_start="19662" e_stop="19670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAGGTGAGCAATGCCGTCAATTTAGGCTTTCTAATTATTTGGAAAGACAATTTGGATTCAGAACTTGTCAGATCCTTTTAGTACTGATCCAAAGACATTTACCTTGCTTTCACATTTTAAATATCAGGTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCTGTAAGTTATACTCCTCAAGCTGTTTTTTGTCTTTCAGCTATTACATATGTGGAATTAGTGAGCTAAAAACTATTTACAATAAATGTTTTAAGAGACTATTTAACAGTTCATGATGCATGACGAAGGGTTCACACTGTCATTGACATAGTTGATATTGTCTTGAGGTTTAACAATGAATATTTGAGAGCAAGTCTTAATTTTTTTTATAGATATCAGTTTTGGTAAATCATTTTGAAGCCTTGCAATGCTAGCACCGCACCCACAGTCCGCTTATTTTTTTTCTTTTGTAAAGGAAGGCTAACATCCCCACTTAAATTGTTCTGCTGGACTCCAGCAAGGGCTTTTATGATAGTAACAGGCTAGAGATGTTGACTCTTTGGTGGGCCAAGAATTAAGTAAAATGCCTCAGATTTAAGGGATGCCTTCTTATCTATGTTAGAAGCTATGTGGTAAGAGACTCAGTTTTGATATCAAATATACTGAGTTCTATATTCCAAGTTTCAATATCTTAACAATTATCAAGATTTAAATTTTTAAGAGAGAATAATTCCTTGTGTAGTTTTGAATAACTGATGTTTTGGTAATTGGTGCCAAACTATGTTGCAACCATTTTGTTGGAGCCGTTCTTTTTCTTGGGTATAATCACTAGTTCAAAAACAGTTCGGAATCTTTTTGATCTTACATTAATGTTGTGATTCTTGCGTATCCACAAGAGAATATATGAGGTGCCTGTTTAATTCAATTTAGAGTTGTATTTGTGATATCTTTAGCATTATGCACTTTCTTAAGGTTCACGCGTGTGCATGATCAATCTCTAGTTTGTCTTGGTTGTGTAACATAGTTTGAACTTGGTTTTTTATGAATATGGAACCTCATCCTCTATATCTTTGTGCGCGTGAAACTGTCTGCACATCATTATCTGTTGCATCAAGTTTATTAGTTTTTCCAATATTTTGCGTCTCTTTTCCTCAGGCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAGGTATGTTTGTTATTTTAAGTAGTTGGTAATGTTTTTAAAAAGTCAGATCTTATGAGCACATTTCTGAAAAGTTCAATACTGTGTCATTTTTTTTTCTATACAGCTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAATATGTATGCTTTTTAATATCCTATCTTAATTGACACAGTTCTCTTGTTCTACCAAAAAAAATGTATCACATGCACCATGTATACAGTAATAAGGATTATTATTTCATGCAGGCAAAAATA</genome_strand>
        <mrna_strand>TGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAG............................................................................................................................GTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAG.......................................................................................................CTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAAAAA............................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273123" ref_strand="+" ref_description="SGN-E273123 [cLEM-24-B17]">
      <seq>tgattgacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttgcgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12014" stop="14291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12314" g_stop="12686" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="13991" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="534" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E273123" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12314" e_stop="12686"/>
          <exon e_start="13831" e_stop="13991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACT</genome_strand>
        <mrna_strand>TGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTGCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262231" ref_strand="+" ref_description="SGN-E262231 [cLEG-56-K15]">
      <seq>gacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagcatttggcgggcacgtgctcttgctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12019" stop="16158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12319" g_stop="12686" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14042" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="580" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15665" g_stop="15858" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="773" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E262231" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12319" e_stop="12686"/>
          <exon e_start="13831" e_stop="14042"/>
          <exon e_start="15665" e_stop="15858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGC</genome_strand>
        <mrna_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAG-CATTTGGCGGGCACGTGCTCTTGCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261207" ref_strand="+" ref_description="SGN-E261207 [cLEG-65-D19]">
      <seq>gacaatgaattccgcatcaatttccagcatacagatcaaaactttctcgaatcttccggcacgccgaactgcatacttaactgcaccggcgcgtagccgagactctccatcaaagtgcttcttcattgccggaaagagtatgtagcatcagcacccaagctggaaggaaatcgtttattcgctacactgtctctgctaactatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattaaaatcgccgggagttcatcagggaccagcttgtttcgatgctctcagtgctaagcttgttgaaccagctgggttcgatttctgcttcacaactggttttggaatatctgctgcacggataagactgccacatgcaggactaatttcttacggagagatggtggctcaaggtctaaagatcacacaagcagtgtccgtaccagtaattggggatggagataatggatatggcaactccatgaatgtcaagacaactgtgacaggatatattatagcttgtttcgggggaatatccttggagatcaggtgtctcccacagcatgtggtctcacacgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12019" stop="14346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12319" g_stop="12686" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14042" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="580" r_length="211" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E261207" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12319" e_stop="12686"/>
          <exon e_start="13831" e_stop="14042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACT-CACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG</genome_strand>
        <mrna_strand>GACAATGAATTCCGCATCAATTTCCAGCATACAGATCAAAACTTTCTCGAATCTTCCGGCACGCCGAACTGCATACTTAACTGCACCGGCGCGTAGCCGAGACTCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTATGTAGCATCAGCACCCAAGCTGGAAGGAAATCGTTTATTCGCTACACTGTCTCTGCTAACTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAAAATCGCCGGGAGTTCATCAGGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACCAGCTGGGTTCGATTTCTGCTTCACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGATAAGACTGCCACATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAAAGATCACACAAGCAGTGTCCGTACCAGTAATTGGGGATGGAGATAATGGATATGGCAACTCCATGAATGTCAAGACAACTGTGACAGGATATATTATAGCTTGTTTCGGGGGAAT-ATCCTTGGAGATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261188" ref_strand="+" ref_description="SGN-E261188 [cLEG-65-E14]">
      <seq>gacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcggggggataatccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12019" stop="14335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12319" g_stop="12686" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14035" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="573" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E261188" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12319" e_stop="12686"/>
          <exon e_start="13831" e_stop="14035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGA</genome_strand>
        <mrna_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGGATAATCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259455" ref_strand="+" ref_description="SGN-E259455 [cLEG-42-G1]">
      <seq>gacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12019" stop="14326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12319" g_stop="12686" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14026" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="564" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E259455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12319" e_stop="12686"/>
          <exon e_start="13831" e_stop="14026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAAT</genome_strand>
        <mrna_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259476" ref_strand="+" ref_description="SGN-E259476 [cLEG-42-M5]">
      <seq>gacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12019" stop="14326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12319" g_stop="12686" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14026" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="564" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E259476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12319" e_stop="12686"/>
          <exon e_start="13831" e_stop="14026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAAT</genome_strand>
        <mrna_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259633" ref_strand="+" ref_description="SGN-E259633 [cLEG-42-M13]">
      <seq>gacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12019" stop="14326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12319" g_stop="12686" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14026" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="564" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E259633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12319" e_stop="12686"/>
          <exon e_start="13831" e_stop="14026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAAT</genome_strand>
        <mrna_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256412" ref_strand="+" ref_description="SGN-E256412 [cLEG-38-C4]">
      <seq>gacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12019" stop="14263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12319" g_stop="12686" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="13963" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="501" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E256412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12319" e_stop="12686"/>
          <exon e_start="13831" e_stop="13963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATA</genome_strand>
        <mrna_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368822" ref_strand="+" ref_description="SGN-E368822 [TUS-26-K23]">
      <seq>gacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgtcagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12019" stop="14234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12319" g_stop="12686" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="13934" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="472" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E368822" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12319" e_stop="12686"/>
          <exon e_start="13831" e_stop="13934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATA</genome_strand>
        <mrna_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGTCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261149" ref_strand="+" ref_description="SGN-E261149 [cLEG-65-D18]">
      <seq>gacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12019" stop="14227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12319" g_stop="12686" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="13927" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="465" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E261149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12319" e_stop="12686"/>
          <exon e_start="13831" e_stop="13927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGT</genome_strand>
        <mrna_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260111" ref_strand="+" ref_description="SGN-E260111 [cLEG-52-C9]">
      <seq>gacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12019" stop="14183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12319" g_stop="12686" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="13883" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="421" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E260111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12319" e_stop="12686"/>
          <exon e_start="13831" e_stop="13883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCT</genome_strand>
        <mrna_strand>GACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359476" ref_strand="+" ref_description="SGN-E359476 [cLHT-31-J1]">
      <seq>aatgaattccgcatcaatttccagcatagagttcagaactgtctcgaatcttccgtcacgccgaactgcatacttagctcaccggcgcgtagccgagaagctccatcaaattgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagttcacttctccggcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgagcgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaatgccatgaatgtcaagagaactgtgaaaggatatattagagcaggttttgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12022" stop="15994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12322" g_stop="12686" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14042" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="577" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15665" g_stop="15694" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="607" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E359476" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12322" e_stop="12686"/>
          <exon e_start="13831" e_stop="14042"/>
          <exon e_start="15665" e_stop="15694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGT</genome_strand>
        <mrna_strand>AATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTGTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAGCTCACCGGCGCGTAGCCGAGAAGCTCCATCAAATTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTCACTTCTCCGGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAGCGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAATGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTTGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287931" ref_strand="+" ref_description="SGN-E287931 [cLES-7-C15]">
      <seq>attccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12027" stop="14263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12327" g_stop="12686" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="13963" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="493" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E287931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12327" e_stop="12686"/>
          <exon e_start="13831" e_stop="13963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATA</genome_strand>
        <mrna_strand>ATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203992" ref_strand="+" ref_description="SGN-E203992 [cLEC-22-C11]">
      <seq>ccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12030" stop="14265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12330" g_stop="12686" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="13965" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="492" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E203992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12330" e_stop="12686"/>
          <exon e_start="13831" e_stop="13965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATG</genome_strand>
        <mrna_strand>CCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271695" ref_strand="+" ref_description="SGN-E271695 [cLEM-23-L15]">
      <seq>cgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12031" stop="15990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12331" g_stop="12686" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14042" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="568" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15665" g_stop="15690" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="594" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E271695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12331" e_stop="12686"/>
          <exon e_start="13831" e_stop="14042"/>
          <exon e_start="15665" e_stop="15690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACAC</genome_strand>
        <mrna_strand>CGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252209" ref_strand="+" ref_description="SGN-E252209 [cLEG-8-L16]">
      <seq>aatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12037" stop="15995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12337" g_stop="12686" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14042" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="562" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15665" g_stop="15695" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="593" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E252209" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12337" e_stop="12686"/>
          <exon e_start="13831" e_stop="14042"/>
          <exon e_start="15665" e_stop="15695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTG</genome_strand>
        <mrna_strand>AATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258272" ref_strand="+" ref_description="SGN-E258272 [cLEG-49-K21]">
      <seq>atttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcggggggataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12038" stop="15995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12338" g_stop="12686" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14042" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="561" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15665" g_stop="15695" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="592" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E258272" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12338" e_stop="12686"/>
          <exon e_start="13831" e_stop="14042"/>
          <exon e_start="15665" e_stop="15695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTG</genome_strand>
        <mrna_strand>ATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGGATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271515" ref_strand="+" ref_description="SGN-E271515 [cLEM-23-K11]">
      <seq>cagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12043" stop="15995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12343" g_stop="12686" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14042" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="556" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15665" g_stop="15695" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="587" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E271515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12343" e_stop="12686"/>
          <exon e_start="13831" e_stop="14042"/>
          <exon e_start="15665" e_stop="15695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTG</genome_strand>
        <mrna_strand>CAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244851" ref_strand="+" ref_description="SGN-E244851 [cLEF-2-M2]">
      <seq>agcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaagactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtnattggggatggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12044" stop="14255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12344" g_stop="12686" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="13955" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="468" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E244851" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12344" e_stop="12686"/>
          <exon e_start="13831" e_stop="13955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGAT</genome_strand>
        <mrna_strand>AGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAAGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTNATTGGGGATGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276205" ref_strand="+" ref_description="SGN-E276205 [cLEN-21-D19]">
      <seq>gtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagcgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12076" stop="14306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12376" g_stop="12686" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14006" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="487" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E276205" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12376" e_stop="12686"/>
          <exon e_start="13831" e_stop="14006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATT</genome_strand>
        <mrna_strand>GTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGCGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313398" ref_strand="+" ref_description="SGN-E313398 [cTOA-13-M19]">
      <seq>ctccatcaaagtgcttcttcattgccggaaggagtaggtaccatctttgacaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattataatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccaataattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaagatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12122" stop="14306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12422" g_stop="12686" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14006" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="441" r_length="176" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E313398" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12422" e_stop="12686"/>
          <exon e_start="13831" e_stop="14006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATT</genome_strand>
        <mrna_strand>CTCCATCAAAGTGCTTCTTCATTGCCGGAAGGAGTAGGTACCATCTTTGACAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTATAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAATAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAAGATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257078" ref_strand="+" ref_description="SGN-E257078 [cLEG-44-J23]">
      <seq>gagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="13590" stop="16915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13890" g_stop="14042" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="435" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="558" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16607" i_stop="16664" i_length="58">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16665" g_stop="16672" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="566" r_length="8" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E257078" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13890" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="16665" e_stop="16672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATA</genome_strand>
        <mrna_strand>GAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG..........................................................GATGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257080" ref_strand="+" ref_description="SGN-E257080 [cLEG-44-L7]">
      <seq>gagatggtggctcaaggtcttgagatcacacaagcagtgtccataccagtgattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattatagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcatgaaagatgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctctaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcaatctcctttgaagaaaccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="13590" stop="16223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13890" g_stop="14042" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15665" g_stop="15923" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="412" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E257080" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13890" e_stop="14042"/>
          <exon e_start="15665" e_stop="15923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATG</genome_strand>
        <mrna_strand>GAGATGGTGGCTCAAGGTCTTGAGATCACACAAGCAGTGTCCATACCAGTGATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTATAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCATGAAAGATGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCTAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAATCTCCTTTGAAGAAACCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257291" ref_strand="+" ref_description="SGN-E257291 [cLEG-46-L1]">
      <seq>agtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgttatgcaacaacaagcagtcaacttccttctcgtaaaggtgatttctcatcaaacagcaatgagtatggtgttcaacccggcatccaagctgatagagtgcagaggactcatataccctgagaatcctgttgaggtattgatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="13637" stop="18274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13937" g_stop="14042" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="388" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="511" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17594" g_stop="17744" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="662" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17869" g_stop="17974" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="769" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E257291" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13937" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17744"/>
          <exon e_start="17869" e_stop="17974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAGGTGAGCAATGCCGTCAATTTAGGCTTTCTAATTATTTGGAAAGACAATTTGGATTCAGAACTTGTCAGATCCTTTTAGTACTGATCCAAAGACATTTACCTTGCTTTCACATTTTAAATATCAGGTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCC-GAGAATCCTGTTGAGGTATTGATACC</genome_strand>
        <mrna_strand>AGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAG............................................................................................................................GTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCATATACCCTGAGAATCCTGTTGAGGTATTGATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263581" ref_strand="+" ref_description="SGN-E263581 [cLEG-60-J17]">
      <seq>agtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgttatgcaacaacaagcagtcaacttcctttctcgtaaaggtgatttctcatcaaacagcaatggagtatggtgttcaacccggcatccaagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="13637" stop="18224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13937" g_stop="14042" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="388" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="511" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17594" g_stop="17744" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="663" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124">
            <donor d_prob="0.894" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17869" g_stop="17924" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="720" r_length="57" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E263581" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13937" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17744"/>
          <exon e_start="17869" e_stop="17924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCC-TTCTCGTAAAGGTGAGCAATGCCGTCAATTTAGGCTTTCTAATTATTTGGAAAGACAATTTGGATTCAGAACTTGTCAGATCCTTTTAGTACTGATCCAAAGACATTTACCTTGCTTTCACATTTTAAATATCAGGTGATTTCTCATCAAACAGCAAT-GAGTATGGTGTTCAACCCGGCATCCAAGCTGAT</genome_strand>
        <mrna_strand>AGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTTCTCGTAAAG............................................................................................................................GTGATTTCTCATCAAACAGCAATGGAGTATGGTGTTCAACCCGGCATCCAAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259823" ref_strand="+" ref_description="SGN-E259823 [cLEG-51-K10]">
      <seq>agtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaagtcggataccatcgccgggtagcatgccttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="13637" stop="17953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13937" g_stop="14042" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="388" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="511" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17594" g_stop="17653" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="571" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E259823" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13937" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTT</genome_strand>
        <mrna_strand>AGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAAGTCGGATACCATCGCCGGGTAGCATGCCTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253986" ref_strand="+" ref_description="SGN-E253986 [cLEG-34-A17]">
      <seq>agtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="13637" stop="17909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13937" g_stop="14042" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="388" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="511" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17594" g_stop="17609" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="527" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E253986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13937" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCA</genome_strand>
        <mrna_strand>AGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264422" ref_strand="+" ref_description="SGN-E264422 [cLEG-67-F9]">
      <seq>agtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaaacttgccaatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="13637" stop="16247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13937" g_stop="14042" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="388" r_length="282" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E264422" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13937" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT</genome_strand>
        <mrna_strand>AGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266216" ref_strand="+" ref_description="SGN-E266216 [cLEI-3-E20]">
      <seq>aatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatgcttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaagatgcattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="13677" stop="16918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13977" g_stop="14042" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="348" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="471" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16607" i_stop="16664" i_length="58">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16665" g_stop="16674" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="481" r_length="10" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E266216" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13977" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="16665" e_stop="16674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGT</genome_strand>
        <mrna_strand>AATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATGCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAA..........................................................GATGCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263961" ref_strand="+" ref_description="SGN-E263961 [cLEG-64-K18]">
      <seq>tcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="13681" stop="18007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13981" g_stop="14042" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="344" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="467" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17594" g_stop="17707" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="581" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E263961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13981" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGT</genome_strand>
        <mrna_strand>TCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257464" ref_strand="+" ref_description="SGN-E257464 [cLEG-45-J21]">
      <seq>gaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgttatgcaacaacaagcagtcaacttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="13723" stop="18035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14023" g_stop="14042" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="302" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="425" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17594" g_stop="17735" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="567" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E257464" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14023" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTT</genome_strand>
        <mrna_strand>GAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257045" ref_strand="+" ref_description="SGN-E257045 [cLEG-44-M4]">
      <seq>gaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="13723" stop="17996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14023" g_stop="14042" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="302" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="425" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17594" g_stop="17696" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="528" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E257045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14023" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAG</genome_strand>
        <mrna_strand>GAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259049" ref_strand="+" ref_description="SGN-E259049 [cLEG-41-A10]">
      <seq>gaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="13723" stop="17957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14023" g_stop="14042" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="302" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="425" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17594" g_stop="17657" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="489" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E259049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14023" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAG</genome_strand>
        <mrna_strand>GAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254003" ref_strand="+" ref_description="SGN-E254003 [cLEG-34-K11]">
      <seq>ccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="15372" stop="16893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15672" g_stop="15946" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16484" g_stop="16593" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="385" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E254003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15672" e_stop="15946"/>
          <exon e_start="16484" e_stop="16593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAAT</genome_strand>
        <mrna_strand>CCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710500" ref_strand="+" ref_description="SGN-E710500 [FA55CE06]">
      <seq>cgttcacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgttatgcaacaacaagcagtcaacttccttctcgtaaaggtgatttctcatcaaacagcaatgagtatggtgttcaacccggcatccaagctgatagagtgcagaggactcaaatacccgagaatcctgttgaggtattgatacctgaggtgtatgacagattttctggtgagggtaagaaaggaaatttctcaatggcctggtctcggaaattgagagtcaagattactggaaaagatggatttgaaaaactaaatatcagaattcctgctggatttttggaaggaatcacaaacatagttccagctttggtaggtgtaaacatcaagtctctgttggatgaggcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="15388" stop="19554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15683" g_stop="15946" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="386" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17594" g_stop="17744" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="537" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17869" g_stop="18098" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="767" r_length="230" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18099" i_stop="19070" i_length="972">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19071" g_stop="19107" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="804" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19211" g_stop="19254" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="848" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E710500" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15683" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17744"/>
          <exon e_start="17869" e_stop="18098"/>
          <exon e_start="19071" e_stop="19107"/>
          <exon e_start="19211" e_stop="19254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAGGTGAGCAATGCCGTCAATTTAGGCTTTCTAATTATTTGGAAAGACAATTTGGATTCAGAACTTGTCAGATCCTTTTAGTACTGATCCAAAGACATTTACCTTGCTTTCACATTTTAAATATCAGGTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCTGTAAGTTATACTCCTCAAGCTGTTTTTTGTCTTTCAGCTATTACATATGTGGAATTAGTGAGCTAAAAACTATTTACAATAAATGTTTTAAGAGACTATTTAACAGTTCATGATGCATGACGAAGGGTTCACACTGTCATTGACATAGTTGATATTGTCTTGAGGTTTAACAATGAATATTTGAGAGCAAGTCTTAATTTTTTTTATAGATATCAGTTTTGGTAAATCATTTTGAAGCCTTGCAATGCTAGCACCGCACCCACAGTCCGCTTATTTTTTTTCTTTTGTAAAGGAAGGCTAACATCCCCACTTAAATTGTTCTGCTGGACTCCAGCAAGGGCTTTTATGATAGTAACAGGCTAGAGATGTTGACTCTTTGGTGGGCCAAGAATTAAGTAAAATGCCTCAGATTTAAGGGATGCCTTCTTATCTATGTTAGAAGCTATGTGGTAAGAGACTCAGTTTTGATATCAAATATACTGAGTTCTATATTCCAAGTTTCAATATCTTAACAATTATCAAGATTTAAATTTTTAAGAGAGAATAATTCCTTGTGTAGTTTTGAATAACTGATGTTTTGGTAATTGGTGCCAAACTATGTTGCAACCATTTTGTTGGAGCCGTTCTTTTTCTTGGGTATAATCACTAGTTCAAAAACAGTTCGGAATCTTTTTGATCTTACATTAATGTTGTGATTCTTGCGTATCCACAAGAGAATATATGAGGTGCCTGTTTAATTCAATTTAGAGTTGTATTTGTGATATCTTTAGCATTATGCACTTTCTTAAGGTTCACGCGTGTGCATGATCAATCTCTAGTTTGTCTTGGTTGTGTAACATAGTTTGAACTTGGTTTTTTATGAATATGGAACCTCATCCTCTATATCTTTGTGCGCGTGAAACTGTCTGCACATCATTATCTGTTGCATCAAGTTTATTAGTTTTTCCAATATTTTGCGTCTCTTTTCCTCAGGCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAGGTATGTTTGTTATTTTAAGTAGTTGGTAATGTTTTTAAAAAGTCAGATCTTATGAGCACATTTCTGAAAAGTTCAATACTGTGTCATTTTTTTTTCTATACAGCTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACT</genome_strand>
        <mrna_strand>CGT-TCACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAG............................................................................................................................GTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAAATATCAGAATTCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAG.......................................................................................................CTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253849" ref_strand="+" ref_description="SGN-E253849 [cLEG-28-P13]">
      <seq>tttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgttatgcaacaacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="15518" stop="18022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15818" g_stop="15946" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="252" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17594" g_stop="17722" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="381" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E253849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15818" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGC</genome_strand>
        <mrna_strand>TTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254289" ref_strand="+" ref_description="SGN-E254289 [cLEG-27-D21]">
      <seq>tgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactgggggcatatccactttccttgattggggtatcaatcggtgcaatgcacgatgcattgactgccattaaaggaggtcggataccatcgccgggttgcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaatagaagcgctatgcaacatcaagcagtcaacttccttctcgtaaaggtgatttctcatcaaacagcaatgagtatggcgttcaacccggcattcaagctgatagagtgcatatgactcaaatacccgagaatcctgttgaggtattgatacctgaagtgtatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="15520" stop="18288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15820" g_stop="15946" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="250" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17594" g_stop="17744" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="401" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124">
            <donor d_prob="0.894" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17869" g_stop="17988" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="521" r_length="120" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E254289" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15820" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17744"/>
          <exon e_start="17869" e_stop="17988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAGGTGAGCAATGCCGTCAATTTAGGCTTTCTAATTATTTGGAAAGACAATTTGGATTCAGAACTTGTCAGATCCTTTTAGTACTGATCCAAAGACATTTACCTTGCTTTCACATTTTAAATATCAGGTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACA</genome_strand>
        <mrna_strand>TGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGGGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGACTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTTGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAATAGAAGCGCTATGCAACATCAAGCAGTCAACTTCCTTCTCGTAAAG............................................................................................................................GTGATTTCTCATCAAACAGCAATGAGTATGGCGTTCAACCCGGCATTCAAGCTGATAGAGTGCATATGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAAGTGTATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293849" ref_strand="+" ref_description="SGN-E293849 [cLET-37-I16]">
      <seq>ttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="16245" stop="18010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16545" g_stop="16606" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17594" g_stop="17710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="179" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E293849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16545" e_stop="16606"/>
          <exon e_start="17594" e_stop="17710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTAT</genome_strand>
        <mrna_strand>TTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263996" ref_strand="+" ref_description="SGN-E263996 [cLEG-64-N19]">
      <seq>tggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgttatgcaacaacaagcagtcaacttccttctcgtaaaggtgatttctcatcaaacagcaatgagtatggtgttcaacccggcatccaagctgatagagtgcagaggactcaaatacccgagaatcctgttgaggtattgatacctgaggtgtatgacagattttctggtgagggtaagaaaggaaatttctcaatggcctggtctcggaaattgagagtcaagattactggaaaagatggatttgaaaaactagatatcagaattcctgctggatttttggaaggaatcacaaacatagttccagctttggtaggtgtaaacatcaagtctctgttggatgaggcaactttagaagagggtgggaaacaattgttggattttcaggatacaatgggtgacaggatacaagttattttggagtaaaggagatcttgcttcttattcctgtattttgatgaatgaatattatatggcaaatgatgtacaatccctagcttagcttggcccctcagaattggtctaaatggaagagcataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="16246" stop="19745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16546" g_stop="16606" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17594" g_stop="17744" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="212" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17869" g_stop="18098" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="442" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18099" i_stop="19070" i_length="972">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19071" g_stop="19107" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="479" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19211" g_stop="19445" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="714" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E263996" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16546" e_stop="16606"/>
          <exon e_start="17594" e_stop="17744"/>
          <exon e_start="17869" e_stop="18098"/>
          <exon e_start="19071" e_stop="19107"/>
          <exon e_start="19211" e_stop="19445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAGGTGAGCAATGCCGTCAATTTAGGCTTTCTAATTATTTGGAAAGACAATTTGGATTCAGAACTTGTCAGATCCTTTTAGTACTGATCCAAAGACATTTACCTTGCTTTCACATTTTAAATATCAGGTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCTGTAAGTTATACTCCTCAAGCTGTTTTTTGTCTTTCAGCTATTACATATGTGGAATTAGTGAGCTAAAAACTATTTACAATAAATGTTTTAAGAGACTATTTAACAGTTCATGATGCATGACGAAGGGTTCACACTGTCATTGACATAGTTGATATTGTCTTGAGGTTTAACAATGAATATTTGAGAGCAAGTCTTAATTTTTTTTATAGATATCAGTTTTGGTAAATCATTTTGAAGCCTTGCAATGCTAGCACCGCACCCACAGTCCGCTTATTTTTTTTCTTTTGTAAAGGAAGGCTAACATCCCCACTTAAATTGTTCTGCTGGACTCCAGCAAGGGCTTTTATGATAGTAACAGGCTAGAGATGTTGACTCTTTGGTGGGCCAAGAATTAAGTAAAATGCCTCAGATTTAAGGGATGCCTTCTTATCTATGTTAGAAGCTATGTGGTAAGAGACTCAGTTTTGATATCAAATATACTGAGTTCTATATTCCAAGTTTCAATATCTTAACAATTATCAAGATTTAAATTTTTAAGAGAGAATAATTCCTTGTGTAGTTTTGAATAACTGATGTTTTGGTAATTGGTGCCAAACTATGTTGCAACCATTTTGTTGGAGCCGTTCTTTTTCTTGGGTATAATCACTAGTTCAAAAACAGTTCGGAATCTTTTTGATCTTACATTAATGTTGTGATTCTTGCGTATCCACAAGAGAATATATGAGGTGCCTGTTTAATTCAATTTAGAGTTGTATTTGTGATATCTTTAGCATTATGCACTTTCTTAAGGTTCACGCGTGTGCATGATCAATCTCTAGTTTGTCTTGGTTGTGTAACATAGTTTGAACTTGGTTTTTTATGAATATGGAACCTCATCCTCTATATCTTTGTGCGCGTGAAACTGTCTGCACATCATTATCTGTTGCATCAAGTTTATTAGTTTTTCCAATATTTTGCGTCTCTTTTCCTCAGGCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAGGTATGTTTGTTATTTTAAGTAGTTGGTAATGTTTTTAAAAAGTCAGATCTTATGAGCACATTTCTGAAAAGTTCAATACTGTGTCATTTTTTTTTCTATACAGCTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATG</genome_strand>
        <mrna_strand>TGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAG............................................................................................................................GTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAG.......................................................................................................CTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGAATTGGTCTAAATGGAAGAGCATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251253" ref_strand="+" ref_description="SGN-E251253 [cLEG-10-E14]">
      <seq>tggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgttatgcaacaacaagcagtcaacttccttctcgtaaaggtgatttctcatcaaacagcaatgagtatggtgttcaacccggcatccaagctgatagagtgcataggactcaaatacccgagaatcctgttgaggtattgatacctgacgtgtatgacagattttctggtgagggtaagaaaggaaatttctcaatggcctggtctcggaaattgagagtcaagattactggaaaagatggatttgaaaaactagatatcagaattcctgctggatttttggaaggaatcacaaacatagttccagctttggtaggtgtaaacatcacgtctctgttggatgaagcaactttaaaagacggtgggaaacaattgttggattttcaggatacaatgggtgacaggatacaagttattttggagtaaaggagatcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="16246" stop="19641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16546" g_stop="16606" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17594" g_stop="17744" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="212" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17869" g_stop="18098" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="442" r_length="230" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18099" i_stop="19070" i_length="972">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19071" g_stop="19107" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="479" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19211" g_stop="19341" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="610" r_length="131" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E251253" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16546" e_stop="16606"/>
          <exon e_start="17594" e_stop="17744"/>
          <exon e_start="17869" e_stop="18098"/>
          <exon e_start="19071" e_stop="19107"/>
          <exon e_start="19211" e_stop="19341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAGGTGAGCAATGCCGTCAATTTAGGCTTTCTAATTATTTGGAAAGACAATTTGGATTCAGAACTTGTCAGATCCTTTTAGTACTGATCCAAAGACATTTACCTTGCTTTCACATTTTAAATATCAGGTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCTGTAAGTTATACTCCTCAAGCTGTTTTTTGTCTTTCAGCTATTACATATGTGGAATTAGTGAGCTAAAAACTATTTACAATAAATGTTTTAAGAGACTATTTAACAGTTCATGATGCATGACGAAGGGTTCACACTGTCATTGACATAGTTGATATTGTCTTGAGGTTTAACAATGAATATTTGAGAGCAAGTCTTAATTTTTTTTATAGATATCAGTTTTGGTAAATCATTTTGAAGCCTTGCAATGCTAGCACCGCACCCACAGTCCGCTTATTTTTTTTCTTTTGTAAAGGAAGGCTAACATCCCCACTTAAATTGTTCTGCTGGACTCCAGCAAGGGCTTTTATGATAGTAACAGGCTAGAGATGTTGACTCTTTGGTGGGCCAAGAATTAAGTAAAATGCCTCAGATTTAAGGGATGCCTTCTTATCTATGTTAGAAGCTATGTGGTAAGAGACTCAGTTTTGATATCAAATATACTGAGTTCTATATTCCAAGTTTCAATATCTTAACAATTATCAAGATTTAAATTTTTAAGAGAGAATAATTCCTTGTGTAGTTTTGAATAACTGATGTTTTGGTAATTGGTGCCAAACTATGTTGCAACCATTTTGTTGGAGCCGTTCTTTTTCTTGGGTATAATCACTAGTTCAAAAACAGTTCGGAATCTTTTTGATCTTACATTAATGTTGTGATTCTTGCGTATCCACAAGAGAATATATGAGGTGCCTGTTTAATTCAATTTAGAGTTGTATTTGTGATATCTTTAGCATTATGCACTTTCTTAAGGTTCACGCGTGTGCATGATCAATCTCTAGTTTGTCTTGGTTGTGTAACATAGTTTGAACTTGGTTTTTTATGAATATGGAACCTCATCCTCTATATCTTTGTGCGCGTGAAACTGTCTGCACATCATTATCTGTTGCATCAAGTTTATTAGTTTTTCCAATATTTTGCGTCTCTTTTCCTCAGGCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAGGTATGTTTGTTATTTTAAGTAGTTGGTAATGTTTTTAAAAAGTCAGATCTTATGAGCACATTTCTGAAAAGTTCAATACTGTGTCATTTTTTTTTCTATACAGCTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGC</genome_strand>
        <mrna_strand>TGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAG............................................................................................................................GTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCATAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGACGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAG.......................................................................................................CTTTGGTAGGTGTAAACATCACGTCTCTGTTGGATGAAGCAACTTTAAAAGACGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254084" ref_strand="+" ref_description="SGN-E254084 [cLEG-34-H23]">
      <seq>tggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgttatgcaacaacaagcagtcaacttccttctcgtaaaggtgatttctcatcaaacagcaatgagtatggtgttcaacccggcatccaagctgatagagtgcagaggactcaaatacccgagaatcctgttgaggtattgatacctgaggtgtatgacagattttctggtgagggtaagaaaggaaatttctcaatggcctggtctcggaaattgagagtcaagattactggaaaagatggatttgaaaaactagatatcagaattcctgctggatttttggaaggaatcacaaacatagttccagctttggtaggtgtaaacatcaagtctctgttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="16246" stop="19546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16546" g_stop="16606" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17594" g_stop="17744" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="212" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17869" g_stop="18098" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="442" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18099" i_stop="19070" i_length="972">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19071" g_stop="19107" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="479" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19211" g_stop="19246" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="515" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E254084" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16546" e_stop="16606"/>
          <exon e_start="17594" e_stop="17744"/>
          <exon e_start="17869" e_stop="18098"/>
          <exon e_start="19071" e_stop="19107"/>
          <exon e_start="19211" e_stop="19246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAGGTGAGCAATGCCGTCAATTTAGGCTTTCTAATTATTTGGAAAGACAATTTGGATTCAGAACTTGTCAGATCCTTTTAGTACTGATCCAAAGACATTTACCTTGCTTTCACATTTTAAATATCAGGTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCTGTAAGTTATACTCCTCAAGCTGTTTTTTGTCTTTCAGCTATTACATATGTGGAATTAGTGAGCTAAAAACTATTTACAATAAATGTTTTAAGAGACTATTTAACAGTTCATGATGCATGACGAAGGGTTCACACTGTCATTGACATAGTTGATATTGTCTTGAGGTTTAACAATGAATATTTGAGAGCAAGTCTTAATTTTTTTTATAGATATCAGTTTTGGTAAATCATTTTGAAGCCTTGCAATGCTAGCACCGCACCCACAGTCCGCTTATTTTTTTTCTTTTGTAAAGGAAGGCTAACATCCCCACTTAAATTGTTCTGCTGGACTCCAGCAAGGGCTTTTATGATAGTAACAGGCTAGAGATGTTGACTCTTTGGTGGGCCAAGAATTAAGTAAAATGCCTCAGATTTAAGGGATGCCTTCTTATCTATGTTAGAAGCTATGTGGTAAGAGACTCAGTTTTGATATCAAATATACTGAGTTCTATATTCCAAGTTTCAATATCTTAACAATTATCAAGATTTAAATTTTTAAGAGAGAATAATTCCTTGTGTAGTTTTGAATAACTGATGTTTTGGTAATTGGTGCCAAACTATGTTGCAACCATTTTGTTGGAGCCGTTCTTTTTCTTGGGTATAATCACTAGTTCAAAAACAGTTCGGAATCTTTTTGATCTTACATTAATGTTGTGATTCTTGCGTATCCACAAGAGAATATATGAGGTGCCTGTTTAATTCAATTTAGAGTTGTATTTGTGATATCTTTAGCATTATGCACTTTCTTAAGGTTCACGCGTGTGCATGATCAATCTCTAGTTTGTCTTGGTTGTGTAACATAGTTTGAACTTGGTTTTTTATGAATATGGAACCTCATCCTCTATATCTTTGTGCGCGTGAAACTGTCTGCACATCATTATCTGTTGCATCAAGTTTATTAGTTTTTCCAATATTTTGCGTCTCTTTTCCTCAGGCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAGGTATGTTTGTTATTTTAAGTAGTTGGTAATGTTTTTAAAAAGTCAGATCTTATGAGCACATTTCTGAAAAGTTCAATACTGTGTCATTTTTTTTTCTATACAGCTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATG</genome_strand>
        <mrna_strand>TGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAG............................................................................................................................GTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAG.......................................................................................................CTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259112" ref_strand="+" ref_description="SGN-E259112 [cLEG-41-P11]">
      <seq>ctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgttatgcaacaacaagcagtcaacttccttctcgtaaaggtgatttctcatcaaacagcaatgagtgtggtgttcaacccggcgtccaagctgatagagtgcagaggactcaaatacccgagaatcctgttgaggtattgatacctgaggtgtatgacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="17304" stop="18289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17604" g_stop="17744" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17869" g_stop="17989" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="262" r_length="121" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E259112" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17604" e_stop="17744"/>
          <exon e_start="17869" e_stop="17989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAGGTGAGCAATGCCGTCAATTTAGGCTTTCTAATTATTTGGAAAGACAATTTGGATTCAGAACTTGTCAGATCCTTTTAGTACTGATCCAAAGACATTTACCTTGCTTTCACATTTTAAATATCAGGTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAG</genome_strand>
        <mrna_strand>CTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAG............................................................................................................................GTGATTTCTCATCAAACAGCAATGAGTGTGGTGTTCAACCCGGCGTCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260734" ref_strand="-" ref_description="SGN-E260734 [cLEG-54-H4]">
      <seq>gggtagcatgccttcatttgaagagctaaagagattcctaggtttcaatacctactatgaagaagagaagcgttatgcaacaacaagcagtcaacttctttctcgtaaaggtgatttctcatcaaacagcaatgagtatggtgttcaacccggcatccaagctgatagagtgcagaggactcaaatacccgagaatcctgttgaggtattgatacctgaggtgtatgacagattttctggtgagggtaagaaaggaaatttctcaatggcctggtctcggaaattgagagtcaagattactggaaaagatggatttgaaaaactagatatcagaattcctgctggatttttggaaggaatcacaaacatagttccagctttggtaggtgtaaacatcaagtctctgttggatgaggcaactttagaagagggtgggaaacaattgttggattttcaggatacaatgggtgacaggatacaagttattttggagtaaaggagatcttgcttcttattcctgtattttgatgaatgaatattatatggcaaatgatgtacaatccctagcttagcttggcccctcagatttggtctaaatggaagagcataatgcatatgaaataatgtgtgggttaagcgcatgttacaaaagagtatggtattgttttctgcatgtaatcccctaaaatattgatcaataatataatttagttaaaataaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="17335" stop="19852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17635" g_stop="17744" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17869" g_stop="18098" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="340" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18099" i_stop="19070" i_length="972">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19071" g_stop="19107" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="377" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19211" g_stop="19553" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="720" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="738"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E260734" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260734" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17635" e_stop="17744"/>
          <exon e_start="17869" e_stop="18098"/>
          <exon e_start="19071" e_stop="19107"/>
          <exon e_start="19211" e_stop="19553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGA-TCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAGGTGAGCAATGCCGTCAATTTAGGCTTTCTAATTATTTGGAAAGACAATTTGGATTCAGAACTTGTCAGATCCTTTTAGTACTGATCCAAAGACATTTACCTTGCTTTCACATTTTAAATATCAGGTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCTGTAAGTTATACTCCTCAAGCTGTTTTTTGTCTTTCAGCTATTACATATGTGGAATTAGTGAGCTAAAAACTATTTACAATAAATGTTTTAAGAGACTATTTAACAGTTCATGATGCATGACGAAGGGTTCACACTGTCATTGACATAGTTGATATTGTCTTGAGGTTTAACAATGAATATTTGAGAGCAAGTCTTAATTTTTTTTATAGATATCAGTTTTGGTAAATCATTTTGAAGCCTTGCAATGCTAGCACCGCACCCACAGTCCGCTTATTTTTTTTCTTTTGTAAAGGAAGGCTAACATCCCCACTTAAATTGTTCTGCTGGACTCCAGCAAGGGCTTTTATGATAGTAACAGGCTAGAGATGTTGACTCTTTGGTGGGCCAAGAATTAAGTAAAATGCCTCAGATTTAAGGGATGCCTTCTTATCTATGTTAGAAGCTATGTGGTAAGAGACTCAGTTTTGATATCAAATATACTGAGTTCTATATTCCAAGTTTCAATATCTTAACAATTATCAAGATTTAAATTTTTAAGAGAGAATAATTCCTTGTGTAGTTTTGAATAACTGATGTTTTGGTAATTGGTGCCAAACTATGTTGCAACCATTTTGTTGGAGCCGTTCTTTTTCTTGGGTATAATCACTAGTTCAAAAACAGTTCGGAATCTTTTTGATCTTACATTAATGTTGTGATTCTTGCGTATCCACAAGAGAATATATGAGGTGCCTGTTTAATTCAATTTAGAGTTGTATTTGTGATATCTTTAGCATTATGCACTTTCTTAAGGTTCACGCGTGTGCATGATCAATCTCTAGTTTGTCTTGGTTGTGTAACATAGTTTGAACTTGGTTTTTTATGAATATGGAACCTCATCCTCTATATCTTTGTGCGCGTGAAACTGTCTGCACATCATTATCTGTTGCATCAAGTTTATTAGTTTTTCCAATATTTTGCGTCTCTTTTCCTCAGGCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAGGTATGTTTGTTATTTTAAGTAGTTGGTAATGTTTTTAAAAAGTCAGATCTTATGAGCACATTTCTGAAAAGTTCAATACTGTGTCATTTTTTTTTCTATACAGCTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAATAT</genome_strand>
        <mrna_strand>GGGTAGCATGCCTTCATTTGAAGAGCT-AAAGAGATTCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCTTTCTCGTAAAG............................................................................................................................GTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAG.......................................................................................................CTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317936" ref_strand="-" ref_description="SGN-E317936 [cTOA-30-A14]">
      <seq>catcaaacagcaatgagtatggtgttcaacccggcatccaagctgatagagtgcagaggactcaaatacccgagaatcctgttgaggtattgatacctgaggtgtatgacagattttctggtgagggtaagaaaggaaatttctcaatggcctggtctcggaaattgagagtcaagattactggaaaagatggatttgaaaaactagatatcagaattcctgctggatttttggaaggaatcacaaacatagttccagctttggtaggtgtaaacatcaagtctctgttggatgaggcaactttagaagagggtgggaaacaattgttggattttcaggatacaatgggtgacaggatacaagttattttggagtaaaggagatcttgcttcttattcctgtattttgatgaatgaatattatatggcaaatgatgtacaatccctagcttagcttggcccctcagatttggtctaaatggaagagcataatgcatatgaaataatgtgtgggttaagcgcatgttacaaaagagtatggtattgttttctgcatgtaatcccctaaaatattgatcaataatataatttagttaaaataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="17578" stop="19852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17878" g_stop="18098" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18099" i_stop="19070" i_length="972">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19071" g_stop="19107" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="258" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19211" g_stop="19553" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="601" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="602" polyA_stop="619"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E317936" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317936" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17878" e_stop="18098"/>
          <exon e_start="19071" e_stop="19107"/>
          <exon e_start="19211" e_stop="19553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCTGTAAGTTATACTCCTCAAGCTGTTTTTTGTCTTTCAGCTATTACATATGTGGAATTAGTGAGCTAAAAACTATTTACAATAAATGTTTTAAGAGACTATTTAACAGTTCATGATGCATGACGAAGGGTTCACACTGTCATTGACATAGTTGATATTGTCTTGAGGTTTAACAATGAATATTTGAGAGCAAGTCTTAATTTTTTTTATAGATATCAGTTTTGGTAAATCATTTTGAAGCCTTGCAATGCTAGCACCGCACCCACAGTCCGCTTATTTTTTTTCTTTTGTAAAGGAAGGCTAACATCCCCACTTAAATTGTTCTGCTGGACTCCAGCAAGGGCTTTTATGATAGTAACAGGCTAGAGATGTTGACTCTTTGGTGGGCCAAGAATTAAGTAAAATGCCTCAGATTTAAGGGATGCCTTCTTATCTATGTTAGAAGCTATGTGGTAAGAGACTCAGTTTTGATATCAAATATACTGAGTTCTATATTCCAAGTTTCAATATCTTAACAATTATCAAGATTTAAATTTTTAAGAGAGAATAATTCCTTGTGTAGTTTTGAATAACTGATGTTTTGGTAATTGGTGCCAAACTATGTTGCAACCATTTTGTTGGAGCCGTTCTTTTTCTTGGGTATAATCACTAGTTCAAAAACAGTTCGGAATCTTTTTGATCTTACATTAATGTTGTGATTCTTGCGTATCCACAAGAGAATATATGAGGTGCCTGTTTAATTCAATTTAGAGTTGTATTTGTGATATCTTTAGCATTATGCACTTTCTTAAGGTTCACGCGTGTGCATGATCAATCTCTAGTTTGTCTTGGTTGTGTAACATAGTTTGAACTTGGTTTTTTATGAATATGGAACCTCATCCTCTATATCTTTGTGCGCGTGAAACTGTCTGCACATCATTATCTGTTGCATCAAGTTTATTAGTTTTTCCAATATTTTGCGTCTCTTTTCCTCAGGCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAGGTATGTTTGTTATTTTAAGTAGTTGGTAATGTTTTTAAAAAGTCAGATCTTATGAGCACATTTCTGAAAAGTTCAATACTGTGTCATTTTTTTTTCTATACAGCTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAATAT</genome_strand>
        <mrna_strand>CATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAG.......................................................................................................CTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368821" ref_strand="+" ref_description="SGN-E368821 [TUS-26-K23](-)">
      <seq>gtatggtgttcaacccggcatccaagctgataaagtgcaagggactcaaatacccgaaaatcctgttgaggtattgatacctgaggtgtatgacagattttctggtgagggtaagaaaggaaatttctcaatggcctggtctcggaaattgagagtcaagattactggaaaagatggatttgaaaaactagatatcagaattcctgctggatttttggaaggaatcacaaacatagttccagctttggtaggtgtaaacatcaagtctctgttggatgaggcaactttagaagagggtgggaaacaattgttggattttcaggatacaatgggtgacaggatacaagttattttggagtaaaggagatcttgcttcttattcctgtattttgatgaatgaatattatatggcaaatgatgtacaatccctagcttagcttggcccctcagatttggtctaaatggaagagcataatgcatatgaaataatgtgtgggttaagcgcatgttacaaaagagtatggtattgttttctgcatgtaatcccctaaaatattgatcaataatataatttagttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="17594" stop="19852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17894" g_stop="18098" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18099" i_stop="19070" i_length="972">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19071" g_stop="19107" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="242" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19211" g_stop="19553" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="585" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E368821" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17894" e_stop="18098"/>
          <exon e_start="19071" e_stop="19107"/>
          <exon e_start="19211" e_stop="19553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCTGTAAGTTATACTCCTCAAGCTGTTTTTTGTCTTTCAGCTATTACATATGTGGAATTAGTGAGCTAAAAACTATTTACAATAAATGTTTTAAGAGACTATTTAACAGTTCATGATGCATGACGAAGGGTTCACACTGTCATTGACATAGTTGATATTGTCTTGAGGTTTAACAATGAATATTTGAGAGCAAGTCTTAATTTTTTTTATAGATATCAGTTTTGGTAAATCATTTTGAAGCCTTGCAATGCTAGCACCGCACCCACAGTCCGCTTATTTTTTTTCTTTTGTAAAGGAAGGCTAACATCCCCACTTAAATTGTTCTGCTGGACTCCAGCAAGGGCTTTTATGATAGTAACAGGCTAGAGATGTTGACTCTTTGGTGGGCCAAGAATTAAGTAAAATGCCTCAGATTTAAGGGATGCCTTCTTATCTATGTTAGAAGCTATGTGGTAAGAGACTCAGTTTTGATATCAAATATACTGAGTTCTATATTCCAAGTTTCAATATCTTAACAATTATCAAGATTTAAATTTTTAAGAGAGAATAATTCCTTGTGTAGTTTTGAATAACTGATGTTTTGGTAATTGGTGCCAAACTATGTTGCAACCATTTTGTTGGAGCCGTTCTTTTTCTTGGGTATAATCACTAGTTCAAAAACAGTTCGGAATCTTTTTGATCTTACATTAATGTTGTGATTCTTGCGTATCCACAAGAGAATATATGAGGTGCCTGTTTAATTCAATTTAGAGTTGTATTTGTGATATCTTTAGCATTATGCACTTTCTTAAGGTTCACGCGTGTGCATGATCAATCTCTAGTTTGTCTTGGTTGTGTAACATAGTTTGAACTTGGTTTTTTATGAATATGGAACCTCATCCTCTATATCTTTGTGCGCGTGAAACTGTCTGCACATCATTATCTGTTGCATCAAGTTTATTAGTTTTTCCAATATTTTGCGTCTCTTTTCCTCAGGCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAGGTATGTTTGTTATTTTAAGTAGTTGGTAATGTTTTTAAAAAGTCAGATCTTATGAGCACATTTCTGAAAAGTTCAATACTGTGTCATTTTTTTTTCTATACAGCTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAATAT</genome_strand>
        <mrna_strand>GTATGGTGTTCAACCCGGCATCCAAGCTGATAAAGTGCAAGGGACTCAAATACCCGAAAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAG.......................................................................................................CTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261166" ref_strand="-" ref_description="SGN-E261166 [cLEG-65-G9]">
      <seq>tggatttttggaaggaatcacgaacatagttccagctttggtaggtgtaaacatcaagtctctgttggatgaggcaactttagaagagggtgggaaacaattgttggattttcaggatacaatgggtgacaggatacaagttattttggagtaaaggagatcttgcttgttattcctgtattttgatgaatgaatattatatggcaaatgatgtacaatccctagcttagcttggcccctcagatttggtctaaatggaagagcataatgcatatgaaataatgtgtgggttaagcgcatgttacaaaagagtatggtattgttttctgcatgtaatcccctaaaatattgatcaataatataatttagttgcaaatacaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="18773" stop="19858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19073" g_stop="19107" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19211" g_stop="19550" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="375" r_length="340" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="394"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E261166" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261166" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19073" e_stop="19107"/>
          <exon e_start="19211" e_stop="19550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTTTTGGAAGGAATCACAAACATAGTTCCAGGTATGTTTGTTATTTTAAGTAGTTGGTAATGTTTTTAAAAAGTCAGATCTTATGAGCACATTTCTGAAAAGTTCAATACTGTGTCATTTTTTTTTCTATACAGCTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAA</genome_strand>
        <mrna_strand>TGGATTTTTGGAAGGAATCACGAACATAGTTCCAG.......................................................................................................CTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTGTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279185" ref_strand="-" ref_description="SGN-E279185 [cLEL-4-H14](-)">
      <seq>gcacgagaaaaaacccttacatagatagagagcaaacctaagcttgaactcagcagcgaattttaagcgttcatcgtcaatggacgccataaggaagcaactggatgtgttaatgggagctaaccggaacggcgatgtgacggaggttgatcggaagtactacgaccgtgaagtttgccgtctttatctctccggtctctgccctcacgaactctttcagctcactaaaatggatatgggggcatgccctaaggtgcattcgttgcctctaagaaaagaatatgaagaagcaaaggcaaaaggtcaggataactatgacagggacttggaggatttaatagacaggctgattgttgagtgtgacaggaaaataactagagcccttaaaaggcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="20210" stop="24428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20507" g_stop="20732" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20733" i_stop="22343" i_length="1611">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22344" g_stop="22396" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="279" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22397" i_stop="24011" i_length="1615">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24012" g_stop="24128" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="396" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E279185" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279185" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20507" e_stop="20732"/>
          <exon e_start="22344" e_stop="22396"/>
          <exon e_start="24012" e_stop="24128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGAAAAAAACCCTTACATAGATAGAGAGCAAACCTAAGCTTGAACTCAGCAGCGAATTTTAAGCGTTCATCGTCAATGGACGCCATAAGGAAGCAACTGGATGTGTTAATGGGAGCTAACCGGAACGGCGATGTGACGGAGGTTGATCGGAAGTACTACGACCGTGAAGTTTGCCGTCTTTATCTCTCCGGTCTCTGCCCTCACGAACTCTTTCAGCTCACTGTACGTAACATTTAACACCGCTCTCTCTATTTCTTCGTTTCCTTGCTTCCTTGTGTTTGTGTTTGTATTTGAATCCCTAGGTTATTTACTGTTGTTTTTGGATAATCGAAAAAAATTCATTTAGGAGTCCAAAAATAGTTGAAGCTTTAGATTTAAATAGTTTTTGTATACATAGATCTTAATTTTGTGCTATGAAGTGTACTCCGGCTATTACTGGGCAGGGGAGAGTGAAATGCGTACACAAATGCCATAGAGCTCTCTCTATCTATATGTTTACATGTTTCCTCGTATGTGGGTGTTTGTATTTGAATCCTTAGGTTGTTTGTTTTTTTGGTAACTGAAAAAATTCATTTCGGTTGGTGAGAATTAGTTGGAGGCTTAGATTTAAATATTTTTGCTCCATAGAGTTCTTACTTGGTGCAATGAAGTGTTCTCGGACTTGTGGGGTAGGGGAGTGAATCTATACTCTGTGCAGCTGTTTCTATGCCTAGAATTTGGTGTGCTTAGAGATATCAAAGGAGAACCTCTACTGTGCATCTATGTTAGTTATTTGTTGACTATGTGTATAAGTAGATTGTGCATTTTTGGTGCTTTTTGAAGTTGAAACAACTATTTTGTTCTATAACTGCTGAAATGAAATTATAATAAGAAGTTTTGGATGGAAAACTTTATCCAAAGATGGGGGTTGAGAACACTCTGCTTTTGGAACAAAATTGGAGGAAACCCTGGTGATTCAATTCCTATAATTTGCCCACTTGGCACCGACTGCTATGTGTTATTTTCTTTTGCCTCAAGATTTTTGCCGTTAGAATCACCCTTTAGTAGTCAACTGTGTAAGAAACAATCCTTTCTTGGAATTTATGGATTCCATATGGAAAGATGTGGGAATTCTGTGACCCCTATAGTAGCTTGTGGTTGAAGACATCATTTAGAATGTTCTCATTCAGTGCTCAGACTACTACGGGTCATCTTACTCTGTCAATGCTTGCCTGTATAGAAGCGCCATAAATTTGTGGAATTCATCCATCTCTCAGTCTTGCAAGTTTCTTTTGAAGACTAAGTCTATGAAATTCTTCACACTTGCATCTCTTACACCTGGGCGACTAGCATTAGTCTATGGCTCAAAATGTAGAACCTTGAGGAGAGCACTTCTTGGACTTCCTTTATGTCACCACCCATACCCTCATAAGCTATCCCTGTTCTTGATTCCTACTTTGATAAATATTTGCTTACAATTATGAAGATGTGAACCAGTGAAATACAAGTTGATAACAGTAATGCTAAATACTTGTAGGAAAAAAATGATAAATATTGCTCCTCTAGTATCAAGCTTTATTTAATTTAATGGGAATCATCTTTATCTAGTGAAATTAGTCAATTCTTATTGATAAGGTGAAACCAGTCAGCATCAAAGAGTCAACTCACATGCTATCCATATTAGATCTTTGAATTTAAAATATCGACTATTGAAAATGCTTGTTTGGGTGGGTAGGGGGGGGGGTTGTTGGAGTGGTTCAGTTTTGTCCCAGGTGTCCTCCGTCTTCATTTCGAGTTTAATTTTATTAATGTTTTGCACTGATTTTTTGTTTTAATTTCTTTTCTGTTATGCAGAAAATGGATATGGGGGCATGCCCTAAGGTGCATTCGTTGCCTCTAAGAAAAGAGTATCCTTCTTTGATGTGTGTATTCTGATTTTCAAAGTGTTTCATACTCATGTTTTGTGCCCTAATAAATTGGAGAATTAATATCACGACAAGGCGTTTTGGGCTATTCAAGTAAAAGTTTTCTTACGACTTTACATATGCTAGATAGGGTGGCTGTTGTCACAGGGTGTTTAACTAGATTATCTGTTGTCTTGAAGATTGTAGAAGTTGTTGCAGTATTAGTGGGAATTGAGACAGATTTCTCATTGTAAAATATTATTAGGGACTGACAGGCTTCCTAGTAGCTGGAAGTGAGTGATCAACTTGAATCCTGTTAAATGTTATGGTTGTTTTTAACAAGGATATTAATCTGAAGATCATTGATCTCCTCCTCCTCAAACTCCTGTCAGTCCTACTAGGGTCGTCTAAACAAAATTGAGGGCCTAAAGCCGAACTTCTTAGAGGCCTTAATTTATATTTTCTACTTGACATGTAAATCGAATAATACTCCCTCTTTTTAAAAAAAGAATGACCTCATTTTCTTTTTAATCTTTTTCAAAAAGAATGATCCTTTCCTTTTTTGGCAAAACTTTAACTTTAACTTTCTACCTGGCATGATTAAGGCCACAAGATTAAAGGATATTTTGGTACATTTGATAATTTAGAACCAGAAGATCAAAAAGTCTTCTTTATTTTCTTAAACTTCGTTCCAAGTCAATCTAGGTCATTCTTTTTTAAACAGAGGGAGTAATAACATACTCAATGTAATTTTACAAGTGACTGGAGAGGGTATGATGTACACAAACATTATGAAGCAAGAATGTGAACAATGCAAATTTTTAATGAATGAAATATAATATAAAATCAAGATAATATAACCTGGCTCTTGAATTTGAGAAGTTGATATATTGATATCAAAATAGTGTTGCTCTGAATTTAGTAAGTTCATATGATGATATTGAAACAGCGTTTATTTGTTGCAGTGTTTGAAATTTGAAGAGAAAGCGACAAAAAAATCTGATCTTTTTTATAAACAGACAACATTAGATTTTGCATAATGGAGAAGGTTCGACCGTTCAATAGATCTCGGGATATTCAATAATAAGCGAATAAGAATAGTGAGATGGGAATGAAAAAGGTAATTATTAATGTTTCCTTCTCAAAAAGAAGAAGGGAATGTTATAAGTAAATATAAGAATAATAATGTGGGTGCATGTTAATCGTTGGGATATAAATGATGGAACGAAATAGGTCACTACGTAAGAAAGGATATTACAATTACCTAAATCTATTTCATTTCTTAATAATTACATCGATCCCTATGTTAAATAAGGTAAGAAAATTGTTATATTTCTGGCCAAAAAATTCGTTTCAAAGTTATTGTGTGTATATATAGAATGTTAGGTAAAAGTTGGGGACCGAAAGAAGTTGGGGCCCAAAGCCGTTGCTTAGTGACCTTATTGTCGAGCCGGCCCTGAATTCTACTGAAACTACTGAAAAAAGAGGGAAATCTACAGGAGATATCATCATCAAAATAAACAAATAAATGGACAAGAGGTGTTGTATTCTTTGGTCGATTTGCTTCTTGAAACAGTAAAAATCTAGTACCATTTGTCTTGTCTTAACCTTGTCTTAGATATGAAGAAGCAAAGGCAAAAGGTCAGGATAACTATGACAGGGACTTGGAGGATTTAATAGACAGGCTGATTGTTGAGTGTGACAGGAAAATAACTAGAGCCCTTAAAAGGCTTGA</genome_strand>
        <mrna_strand>GCACGAGAAAAAACCCTTACATAGATAGAGAGCAAACCTAAGCTTGAACTCAGCAGCGAATTTTAAGCGTTCATCGTCAATGGACGCCATAAGGAAGCAACTGGATGTGTTAATGGGAGCTAACCGGAACGGCGATGTGACGGAGGTTGATCGGAAGTACTACGACCGTGAAGTTTGCCGTCTTTATCTCTCCGGTCTCTGCCCTCACGAACTCTTTCAGCTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGATATGGGGGCATGCCCTAAGGTGCATTCGTTGCCTCTAAGAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGAAGCAAAGGCAAAAGGTCAGGATAACTATGACAGGGACTTGGAGGATTTAATAGACAGGCTGATTGTTGAGTGTGACAGGAAAATAACTAGAGCCCTTAAAAGGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347234" ref_strand="+" ref_description="SGN-E347234 [cTOF-25-J5]">
      <seq>aaaaacccttacatagatagagagcaaacctaagcttgaactcagcagcgaattttaagcgttcatcgtcaatggacgccataaggaagcaactggatgtgttaatgggagctaaccggaacggcgatgtgacggaggttgatcggaagtactacgaccgtgaagtttgccgtctttatctctccggtctctgccctcacgaactctttcagctcactaaaatggatatgggggcatgccctaaggtgcattcgttgcctctaagaaaagaatatgaagaagcaaaggcaaaaggtcaggataactatgacagggacttggaggatttaatagacaggctgattgttgagtgtgacaggaaaataactagagcccttaaaaggcttgatgaggaggatgccaaagctgctattgccatatcagtatctgaagttaccctgactccggagattgatgagttgtcaaagcaaattaaagagaagctgaaagaagctgacatacatgatcttgaaggtaagacagatatgaaaattcgagctttggaagaagttgaagaacttcgaactaagagagcagacaaacagtcaatgcttcttttggatgcattcaacaaggatcgagcatctttgccgcagccacttcagaatgctccacagttggcacccttgcctgcatctactccagatcctcgcatacaggaaatgataaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="20215" stop="25752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20515" g_stop="20732" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20733" i_stop="22343" i_length="1611">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22344" g_stop="22396" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="271" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22397" i_stop="24011" i_length="1615">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24012" g_stop="24180" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="440" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24181" i_stop="24303" i_length="123">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24304" g_stop="24367" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="504" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24368" i_stop="25106" i_length="739">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25107" g_stop="25186" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="584" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25187" i_stop="25325" i_length="139">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25326" g_stop="25452" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="711" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E347234" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20515" e_stop="20732"/>
          <exon e_start="22344" e_stop="22396"/>
          <exon e_start="24012" e_stop="24180"/>
          <exon e_start="24304" e_stop="24367"/>
          <exon e_start="25107" e_stop="25186"/>
          <exon e_start="25326" e_stop="25452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCCTTACATAGATAGAGAGCAAACCTAAGCTTGAACTCAGCAGCGAATTTTAAGCGTTCATCGTCAATGGACGCCATAAGGAAGCAACTGGATGTGTTAATGGGAGCTAACCGGAACGGCGATGTGACGGAGGTTGATCGGAAGTACTACGACCGTGAAGTTTGCCGTCTTTATCTCTCCGGTCTCTGCCCTCACGAACTCTTTCAGCTCACTGTACGTAACATTTAACACCGCTCTCTCTATTTCTTCGTTTCCTTGCTTCCTTGTGTTTGTGTTTGTATTTGAATCCCTAGGTTATTTACTGTTGTTTTTGGATAATCGAAAAAAATTCATTTAGGAGTCCAAAAATAGTTGAAGCTTTAGATTTAAATAGTTTTTGTATACATAGATCTTAATTTTGTGCTATGAAGTGTACTCCGGCTATTACTGGGCAGGGGAGAGTGAAATGCGTACACAAATGCCATAGAGCTCTCTCTATCTATATGTTTACATGTTTCCTCGTATGTGGGTGTTTGTATTTGAATCCTTAGGTTGTTTGTTTTTTTGGTAACTGAAAAAATTCATTTCGGTTGGTGAGAATTAGTTGGAGGCTTAGATTTAAATATTTTTGCTCCATAGAGTTCTTACTTGGTGCAATGAAGTGTTCTCGGACTTGTGGGGTAGGGGAGTGAATCTATACTCTGTGCAGCTGTTTCTATGCCTAGAATTTGGTGTGCTTAGAGATATCAAAGGAGAACCTCTACTGTGCATCTATGTTAGTTATTTGTTGACTATGTGTATAAGTAGATTGTGCATTTTTGGTGCTTTTTGAAGTTGAAACAACTATTTTGTTCTATAACTGCTGAAATGAAATTATAATAAGAAGTTTTGGATGGAAAACTTTATCCAAAGATGGGGGTTGAGAACACTCTGCTTTTGGAACAAAATTGGAGGAAACCCTGGTGATTCAATTCCTATAATTTGCCCACTTGGCACCGACTGCTATGTGTTATTTTCTTTTGCCTCAAGATTTTTGCCGTTAGAATCACCCTTTAGTAGTCAACTGTGTAAGAAACAATCCTTTCTTGGAATTTATGGATTCCATATGGAAAGATGTGGGAATTCTGTGACCCCTATAGTAGCTTGTGGTTGAAGACATCATTTAGAATGTTCTCATTCAGTGCTCAGACTACTACGGGTCATCTTACTCTGTCAATGCTTGCCTGTATAGAAGCGCCATAAATTTGTGGAATTCATCCATCTCTCAGTCTTGCAAGTTTCTTTTGAAGACTAAGTCTATGAAATTCTTCACACTTGCATCTCTTACACCTGGGCGACTAGCATTAGTCTATGGCTCAAAATGTAGAACCTTGAGGAGAGCACTTCTTGGACTTCCTTTATGTCACCACCCATACCCTCATAAGCTATCCCTGTTCTTGATTCCTACTTTGATAAATATTTGCTTACAATTATGAAGATGTGAACCAGTGAAATACAAGTTGATAACAGTAATGCTAAATACTTGTAGGAAAAAAATGATAAATATTGCTCCTCTAGTATCAAGCTTTATTTAATTTAATGGGAATCATCTTTATCTAGTGAAATTAGTCAATTCTTATTGATAAGGTGAAACCAGTCAGCATCAAAGAGTCAACTCACATGCTATCCATATTAGATCTTTGAATTTAAAATATCGACTATTGAAAATGCTTGTTTGGGTGGGTAGGGGGGGGGGTTGTTGGAGTGGTTCAGTTTTGTCCCAGGTGTCCTCCGTCTTCATTTCGAGTTTAATTTTATTAATGTTTTGCACTGATTTTTTGTTTTAATTTCTTTTCTGTTATGCAGAAAATGGATATGGGGGCATGCCCTAAGGTGCATTCGTTGCCTCTAAGAAAAGAGTATCCTTCTTTGATGTGTGTATTCTGATTTTCAAAGTGTTTCATACTCATGTTTTGTGCCCTAATAAATTGGAGAATTAATATCACGACAAGGCGTTTTGGGCTATTCAAGTAAAAGTTTTCTTACGACTTTACATATGCTAGATAGGGTGGCTGTTGTCACAGGGTGTTTAACTAGATTATCTGTTGTCTTGAAGATTGTAGAAGTTGTTGCAGTATTAGTGGGAATTGAGACAGATTTCTCATTGTAAAATATTATTAGGGACTGACAGGCTTCCTAGTAGCTGGAAGTGAGTGATCAACTTGAATCCTGTTAAATGTTATGGTTGTTTTTAACAAGGATATTAATCTGAAGATCATTGATCTCCTCCTCCTCAAACTCCTGTCAGTCCTACTAGGGTCGTCTAAACAAAATTGAGGGCCTAAAGCCGAACTTCTTAGAGGCCTTAATTTATATTTTCTACTTGACATGTAAATCGAATAATACTCCCTCTTTTTAAAAAAAGAATGACCTCATTTTCTTTTTAATCTTTTTCAAAAAGAATGATCCTTTCCTTTTTTGGCAAAACTTTAACTTTAACTTTCTACCTGGCATGATTAAGGCCACAAGATTAAAGGATATTTTGGTACATTTGATAATTTAGAACCAGAAGATCAAAAAGTCTTCTTTATTTTCTTAAACTTCGTTCCAAGTCAATCTAGGTCATTCTTTTTTAAACAGAGGGAGTAATAACATACTCAATGTAATTTTACAAGTGACTGGAGAGGGTATGATGTACACAAACATTATGAAGCAAGAATGTGAACAATGCAAATTTTTAATGAATGAAATATAATATAAAATCAAGATAATATAACCTGGCTCTTGAATTTGAGAAGTTGATATATTGATATCAAAATAGTGTTGCTCTGAATTTAGTAAGTTCATATGATGATATTGAAACAGCGTTTATTTGTTGCAGTGTTTGAAATTTGAAGAGAAAGCGACAAAAAAATCTGATCTTTTTTATAAACAGACAACATTAGATTTTGCATAATGGAGAAGGTTCGACCGTTCAATAGATCTCGGGATATTCAATAATAAGCGAATAAGAATAGTGAGATGGGAATGAAAAAGGTAATTATTAATGTTTCCTTCTCAAAAAGAAGAAGGGAATGTTATAAGTAAATATAAGAATAATAATGTGGGTGCATGTTAATCGTTGGGATATAAATGATGGAACGAAATAGGTCACTACGTAAGAAAGGATATTACAATTACCTAAATCTATTTCATTTCTTAATAATTACATCGATCCCTATGTTAAATAAGGTAAGAAAATTGTTATATTTCTGGCCAAAAAATTCGTTTCAAAGTTATTGTGTGTATATATAGAATGTTAGGTAAAAGTTGGGGACCGAAAGAAGTTGGGGCCCAAAGCCGTTGCTTAGTGACCTTATTGTCGAGCCGGCCCTGAATTCTACTGAAACTACTGAAAAAAGAGGGAAATCTACAGGAGATATCATCATCAAAATAAACAAATAAATGGACAAGAGGTGTTGTATTCTTTGGTCGATTTGCTTCTTGAAACAGTAAAAATCTAGTACCATTTGTCTTGTCTTAACCTTGTCTTAGATATGAAGAAGCAAAGGCAAAAGGTCAGGATAACTATGACAGGGACTTGGAGGATTTAATAGACAGGCTGATTGTTGAGTGTGACAGGAAAATAACTAGAGCCCTTAAAAGGCTTGATGAGGAGGATGCCAAAGCTGCTATTGCCATATCAGTATCTGAAGTTACCCTGGTAATTGTCAAGTTTGGGCTCTAAGCTCATTATTTTCTTTTGTTGGTCACTGGTACTTCCTCTTTGCCCTTCCTCCGTATACTTGTCATTGTTACAATTGTTTTCAACTTGTTTAAATTATAGACTCCGGAGATTGATGAGTTGTCAAAGCAAATTAAAGAGAAGCTGAAAGAAGCTGACATACATGGTAAGTTCTTTTAGATATTGCTGATTACCTGAATGCCACGTGAAAGTACCTTTTACAAGTCTTGCAAGCATGACTATGTAGTCTTGATTGGTTATTTCCCATTGTTAGGTTGCTCATATTTTACTTTTTTTGGTTGGTTGCATTTATACATAAATGACGAGTCAGCTTGTCAATTTATATCTCTCTTTGAGCATACAGAGGTTGAGGGAGTAAATTATACTTAATGATTGCTGGTGATATTATTCATCGATTTCTCAAAAAAAAATATTATGAGATTCATCATTACTTTGTCTCATAATTTTAAGCTGGAATGAGTTTTAGTTTCATTCTTGGATCTAGGTTGGCATCAACTAACATATGTGTCATAAGTAAATTTGATCATACTGTGATTTCAGAGTAACAAAATGTGAAGTGCTAATTGCACCCAAGGGTGTGGCCTAGCGGTCAATGTGAAGTGGTTGATAACCTGATGTCTCAGATTCATAACTCTACTGAAACAAAAAACACTAAGTGATTCTTCCCATCTTTCATAGACTATACCTGGTACTTGTTGTTGGTGGTAGGTGGCATGTTTGTGGAATAAGTCAAGGTGTGCGAAAGCTGGTTAGGACACCACTGTTATCAAAAATAAAAAGAAAATGTGAAGTGCTATTATTTTGTGGAATTTTCCTTCTGATGAAAAAACTCAATGTTTCTTTTTGAGTTGGCCAAGTTCTTGAATGATCTAACTTTTCTGCAGATCTTGAAGGTAAGACAGATATGAAAATTCGAGCTTTGGAAGAAGTTGAAGAACTTCGAACTAAGAGAGCAGACAAACAGGTATCAAAAGAACTTAGAGATGTTGAATTTTAGTTTGCCATTCAGTCAACTTGGCAAACATTAATGACATTGCTATACTTAACAGTTCACTCGGTAGTGTGTATTGTCAGAACTTATATTTTCTTATTTCGAATGGCAGTCAATGCTTCTTTTGGATGCATTCAACAAGGATCGAGCATCTTTGCCGCAGCCACTTCAGAATGCTCCACAGTTGGCACCCTTGCCTGCATCTACTCCAGATCCTCGCATACAGGAAATGATAAATG</genome_strand>
        <mrna_strand>AAAAACCCTTACATAGATAGAGAGCAAACCTAAGCTTGAACTCAGCAGCGAATTTTAAGCGTTCATCGTCAATGGACGCCATAAGGAAGCAACTGGATGTGTTAATGGGAGCTAACCGGAACGGCGATGTGACGGAGGTTGATCGGAAGTACTACGACCGTGAAGTTTGCCGTCTTTATCTCTCCGGTCTCTGCCCTCACGAACTCTTTCAGCTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGATATGGGGGCATGCCCTAAGGTGCATTCGTTGCCTCTAAGAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGAAGCAAAGGCAAAAGGTCAGGATAACTATGACAGGGACTTGGAGGATTTAATAGACAGGCTGATTGTTGAGTGTGACAGGAAAATAACTAGAGCCCTTAAAAGGCTTGATGAGGAGGATGCCAAAGCTGCTATTGCCATATCAGTATCTGAAGTTACCCTG...........................................................................................................................ACTCCGGAGATTGATGAGTTGTCAAAGCAAATTAAAGAGAAGCTGAAAGAAGCTGACATACATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGAAGGTAAGACAGATATGAAAATTCGAGCTTTGGAAGAAGTTGAAGAACTTCGAACTAAGAGAGCAGACAAACAG...........................................................................................................................................TCAATGCTTCTTTTGGATGCATTCAACAAGGATCGAGCATCTTTGCCGCAGCCACTTCAGAATGCTCCACAGTTGGCACCCTTGCCTGCATCTACTCCAGATCCTCGCATACAGGAAATGATAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345416" ref_strand="+" ref_description="SGN-E345416 [cTOF-13-F1]">
      <seq>ctcactaaaatggatatgggggcatgccctaaggtgcattcgttgcctctaagaaaagaatatgaagaagcaaaggcaaaaggtcaggataactatgacagggacttggaggatttaatagacaggctgattgttgagtgtgacaggaaaataactagagcccttaaaaggcttgatgaggaggatgccaaagctgctattgccatatcagtatctgaagttaccctgactccggagattgatgagttgaaatcttgtgtcttaacttggtggatgtttggtacttggtagtatctaggagctgatgtcatatatatatactgctgtttttatttggtcgtttttggattatgaattggttaggggggtgaagtttggtatttgattatcaaaatgacatttttttattgtaccagcctttgagatttctcctcttgtggagacaataacccatttaaaaattcttaggcttgttttcgccatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="22044" stop="29705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22255" g_stop="22261" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="0.429"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22262" i_stop="22343" i_length="82">
            <donor d_prob="0.766" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22344" g_stop="22396" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="59" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22397" i_stop="24011" i_length="1615">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24012" g_stop="24180" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="228" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24181" i_stop="24303" i_length="123">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24304" g_stop="24318" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="243" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24319" i_stop="29163" i_length="4845">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29164" g_stop="29404" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="484" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="495"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E345416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22255" e_stop="22261"/>
          <exon e_start="22344" e_stop="22396"/>
          <exon e_start="24012" e_stop="24180"/>
          <exon e_start="24304" e_stop="24318"/>
          <exon e_start="29164" e_stop="29404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCAGGTGTCCTCCGTCTTCATTTCGAGTTTAATTTTATTAATGTTTTGCACTGATTTTTTGTTTTAATTTCTTTTCTGTTATGCAGAAAATGGATATGGGGGCATGCCCTAAGGTGCATTCGTTGCCTCTAAGAAAAGAGTATCCTTCTTTGATGTGTGTATTCTGATTTTCAAAGTGTTTCATACTCATGTTTTGTGCCCTAATAAATTGGAGAATTAATATCACGACAAGGCGTTTTGGGCTATTCAAGTAAAAGTTTTCTTACGACTTTACATATGCTAGATAGGGTGGCTGTTGTCACAGGGTGTTTAACTAGATTATCTGTTGTCTTGAAGATTGTAGAAGTTGTTGCAGTATTAGTGGGAATTGAGACAGATTTCTCATTGTAAAATATTATTAGGGACTGACAGGCTTCCTAGTAGCTGGAAGTGAGTGATCAACTTGAATCCTGTTAAATGTTATGGTTGTTTTTAACAAGGATATTAATCTGAAGATCATTGATCTCCTCCTCCTCAAACTCCTGTCAGTCCTACTAGGGTCGTCTAAACAAAATTGAGGGCCTAAAGCCGAACTTCTTAGAGGCCTTAATTTATATTTTCTACTTGACATGTAAATCGAATAATACTCCCTCTTTTTAAAAAAAGAATGACCTCATTTTCTTTTTAATCTTTTTCAAAAAGAATGATCCTTTCCTTTTTTGGCAAAACTTTAACTTTAACTTTCTACCTGGCATGATTAAGGCCACAAGATTAAAGGATATTTTGGTACATTTGATAATTTAGAACCAGAAGATCAAAAAGTCTTCTTTATTTTCTTAAACTTCGTTCCAAGTCAATCTAGGTCATTCTTTTTTAAACAGAGGGAGTAATAACATACTCAATGTAATTTTACAAGTGACTGGAGAGGGTATGATGTACACAAACATTATGAAGCAAGAATGTGAACAATGCAAATTTTTAATGAATGAAATATAATATAAAATCAAGATAATATAACCTGGCTCTTGAATTTGAGAAGTTGATATATTGATATCAAAATAGTGTTGCTCTGAATTTAGTAAGTTCATATGATGATATTGAAACAGCGTTTATTTGTTGCAGTGTTTGAAATTTGAAGAGAAAGCGACAAAAAAATCTGATCTTTTTTATAAACAGACAACATTAGATTTTGCATAATGGAGAAGGTTCGACCGTTCAATAGATCTCGGGATATTCAATAATAAGCGAATAAGAATAGTGAGATGGGAATGAAAAAGGTAATTATTAATGTTTCCTTCTCAAAAAGAAGAAGGGAATGTTATAAGTAAATATAAGAATAATAATGTGGGTGCATGTTAATCGTTGGGATATAAATGATGGAACGAAATAGGTCACTACGTAAGAAAGGATATTACAATTACCTAAATCTATTTCATTTCTTAATAATTACATCGATCCCTATGTTAAATAAGGTAAGAAAATTGTTATATTTCTGGCCAAAAAATTCGTTTCAAAGTTATTGTGTGTATATATAGAATGTTAGGTAAAAGTTGGGGACCGAAAGAAGTTGGGGCCCAAAGCCGTTGCTTAGTGACCTTATTGTCGAGCCGGCCCTGAATTCTACTGAAACTACTGAAAAAAGAGGGAAATCTACAGGAGATATCATCATCAAAATAAACAAATAAATGGACAAGAGGTGTTGTATTCTTTGGTCGATTTGCTTCTTGAAACAGTAAAAATCTAGTACCATTTGTCTTGTCTTAACCTTGTCTTAGATATGAAGAAGCAAAGGCAAAAGGTCAGGATAACTATGACAGGGACTTGGAGGATTTAATAGACAGGCTGATTGTTGAGTGTGACAGGAAAATAACTAGAGCCCTTAAAAGGCTTGATGAGGAGGATGCCAAAGCTGCTATTGCCATATCAGTATCTGAAGTTACCCTGGTAATTGTCAAGTTTGGGCTCTAAGCTCATTATTTTCTTTTGTTGGTCACTGGTACTTCCTCTTTGCCCTTCCTCCGTATACTTGTCATTGTTACAATTGTTTTCAACTTGTTTAAATTATAGACTCCGGAGATTGATGAGTTGTCAAAGCAAATTAAAGAGAAGCTGAAAGAAGCTGACATACATGGTAAGTTCTTTTAGATATTGCTGATTACCTGAATGCCACGTGAAAGTACCTTTTACAAGTCTTGCAAGCATGACTATGTAGTCTTGATTGGTTATTTCCCATTGTTAGGTTGCTCATATTTTACTTTTTTTGGTTGGTTGCATTTATACATAAATGACGAGTCAGCTTGTCAATTTATATCTCTCTTTGAGCATACAGAGGTTGAGGGAGTAAATTATACTTAATGATTGCTGGTGATATTATTCATCGATTTCTCAAAAAAAAATATTATGAGATTCATCATTACTTTGTCTCATAATTTTAAGCTGGAATGAGTTTTAGTTTCATTCTTGGATCTAGGTTGGCATCAACTAACATATGTGTCATAAGTAAATTTGATCATACTGTGATTTCAGAGTAACAAAATGTGAAGTGCTAATTGCACCCAAGGGTGTGGCCTAGCGGTCAATGTGAAGTGGTTGATAACCTGATGTCTCAGATTCATAACTCTACTGAAACAAAAAACACTAAGTGATTCTTCCCATCTTTCATAGACTATACCTGGTACTTGTTGTTGGTGGTAGGTGGCATGTTTGTGGAATAAGTCAAGGTGTGCGAAAGCTGGTTAGGACACCACTGTTATCAAAAATAAAAAGAAAATGTGAAGTGCTATTATTTTGTGGAATTTTCCTTCTGATGAAAAAACTCAATGTTTCTTTTTGAGTTGGCCAAGTTCTTGAATGATCTAACTTTTCTGCAGATCTTGAAGGTAAGACAGATATGAAAATTCGAGCTTTGGAAGAAGTTGAAGAACTTCGAACTAAGAGAGCAGACAAACAGGTATCAAAAGAACTTAGAGATGTTGAATTTTAGTTTGCCATTCAGTCAACTTGGCAAACATTAATGACATTGCTATACTTAACAGTTCACTCGGTAGTGTGTATTGTCAGAACTTATATTTTCTTATTTCGAATGGCAGTCAATGCTTCTTTTGGATGCATTCAACAAGGATCGAGCATCTTTGCCGCAGCCACTTCAGAATGCTCCACAGTTGGCACCCTTGCCTGCATCTACTCCAGATCCTCGCATACAGGAAATGATAAATGAGAAACTGAAGAAAGCAGAAGATCTTGGTATGTTGAAATCTAAATATTTATAAATTGGCATTGCTTACAACATCCTCCACTTCTTCTACAAGACTAGAAATCGCTTTTTGATATGCTCTATTCTGTCGACTCTCTCTTGGAGTAGTACAATCTCATTATTTTGGTATATGTCCATGCACTTGCGTACGGGCAGTTGAAAAGGAAAGTACCATCAGGAAACACTAGTGAGTAATTCTGGGTTTCAAAATGCTCCCTTGAGATTGTTATTGGTAAATACATGGGAAATGGCAGGGTATTATGTGACTGAAGTGGGAGATACTGTTTCGATTTTGATAATATGAAAAAAGATATCTTTTATTGCTGGACAATTGTTGTTCTACCTTGAGATCAGAACAGCCATATTCTGCTATAGAAGTTTGAAATAAATCTATGCTCATTTCAATTCATTTTGTTCATATTTATTTTATTCAATAAACCATCACCAAAGGTTGTAAGCCCTGGTGTGAAGTGTTGAGCTTGACCTCTAAAGATCATTATCAAATTTGTATGTGAGATTTTGTTACTCTGATCTCAATTTATGATGAAAATGCATTACTGGGAGGCTAAGGATAATTATCTGCACATATTCTCTGATCAGTAGTGAAAATTTTCCTAGAAGTGATTTAAGCAAGATGGAAGCATTTCTGTGTTTTAAACCTCAAATGAAGCTAAATGCCTGTTAATACACCTTGTACAGTTTCTTCTACTATCTTGTTGCACTTGCTTTTTGTGAATTGATCTAATATATAGAAAAGAGACTGTGTGGCAGGGTTGCTTTTGCTCAATGTTTTTTTTTAATCGTATACCTTTCCTTTTACCCTGGTATCTAGGTGAACAAGGAATGGTTGATGAAGCTCAGAAAGCATTGGAAGAGGCGGAAGCTCTTAAGAAGGTTGCCAAACAGTTTTGTTTGTACTTCAATTGTGCTTGATTATAACTTTTTAGTGTTCAAATCGCCCTTCTTTCCTTTCTCTATTTTTTTTGGCTCAAAACACTTCCCCTTCCAGTTCGACTACATTTAACATTTCTCTCCTTGATATGCCTGTCTACTTCATTCAGCTACCTGTGAGGCAAGAACCTGTTCAGGATTCCTCAAAGTACACTGCAGTTGATGTGCGGATTGTAAGTCATTTTTCTAGCTCCGAGAAGCATTGTTTGCTGTTAGTTCTCTTCATTTATAAGTTTATATATGTGCTTTTACCATATTTATCTTAAATGAGTAGTGATCTTACTTTACAAAATTATTCAGATGATTCCTTGAGAAAAAAAAAGCCACATGTAATCATTCTCTGAAAGCATGGTTCGGAGTCGCAGATGGTTCTTAGAATATACTGTGTGACTCGGAGAAGAACTTTTACGGTCTCTTGAGTCCGACGGTGGTATGACTAGTTTGATGGTTACAAGAGGTGGGTCAGGTGAGTTAATTGGGTAACTGTGGTAAGGAGAAACCTTTAGGACTGGGTTAATTCAGAGGGATGGTCGAAGTTCTTTACAAGCAAATCATCACACACTAGTCGTGGTTAATGGAAATCTGAATGGAAAGAGTGGACTCGTAGCCTAAGCCTGAATTAGGGGCCCTTTCTAGCTGTTTACAAGTCAATAAAGAGCTCTCTTCTTTTTGATACTTTCCGATGATAATGATGCAGTTTTCTAGCGTTTTATTGAAAAAATGAACTGTTAAGAATCTCTTAAGAGCCAAAGTTAAATAAAGAACTGGAGTGTTTTTAGCTGCTATTTGATGTACGAAAATGATGCCTCAAGTGGGCACATATGAATGAGTGAGCAGCAGAATCCGGGAAGGGTGTTGTTTGTTGCTGTTCTTGCATATATTTCTGCCGAGGAATCTCACTGGTGGTCTTGATATGAATTTACTATCCCTGACATGTTATTATAACTTTTGCAGACTGATCAGAAGCTCCGTGTATGCGATATTTGTGGAGCTTTCTTAAGTGTTTATGACAGGTAAATGCTCCTTTTTCCATTTCATCTTTTGGAACACTTTACAAGTAGCTGTGTAGGGAAAGCAAAAAGCTGCTTTGAAGTATTGTGTGGTTCAGTTTTTGACATGGCGATTGTACCTCTTGTCACCAGCAGGCTTTTTGGGCCCAGTTTTTCGAGGATAAACTTTTGCCGCTAAATAATGTGCGTCTTTTCTGTGTTAATTTTTCAATCATGTTATGTTTAGCCAGAAAGTTATGGGAGCAACTTCATTTTGCTGTTATCTATTCAAATTTTGTTTCTTAAAATCATTGGACATAGTACTTGAAAATCCGGCTATCCTCACTTCTCTTTTTCTTTCAGTGATCGTCGCTTAGCTGATCATTTTGGAGGAAAGCTTCATTTGGGATATATGCAAATCCGGGAGAAATTAGCTGAACTTCAGGTAAAGATAAGATATCTACTTGAAGATTTCTTCTATTGTGTTGCAGGTAGGTTCTGTTATTGGAAGTATATTACGAGAATTTTGCCATGTGGTATTTGTCAATACATGTGCCTGTTTCCTTATTATCTGGTTGCATACAATAATCTCTGATTGAGCACATTTGATTTATAGTTCCTAAAATTGATCATCTGAATTGTTTGATTCTGGTCCTGGTTTCATGTTTCAGTTTCTTCTGTGGGCACTTTCTACATTTATGCCCTTTATAGTTATCTATCTTTTACTGGTCTTACTATTGTCCATTGTGAAATGTGTATTCTCATATCGCACTTCATATTTTTATGGAACCGTATTAAGGTAGATTTTGAGATGGGGTAGAATGGTTGAATAAGTGACACATGTGTGACTTCTTAAGAGCTAAAGAGGGTTGGTAGTTATATGAAGGAGATCATCATCATAGAGGAGAGTATAATCAATTATTTAGTGCATGAATGAAAATATTGGTCTGCGACTTTAGGCTCTGCCGGTTCCTGCATCTTCCTTTATGAACAGAGAATACAGCGGAAATCTCTTATGGTTTGCTGCCTTGCGAGACAAGGGTGAAAATTTGTTTGGTGGTGATGGTTTGTTACTGCTACTATGTGTTAGCAATTCAATTTTTGCTATTATATAATGTGTGAAAACGTTTCTCAATTATTTGACAAGGATGAAACTTTGTTTTGTGATATGCTTTATCTGTGTTTTCTCAATGATGAATTGCCAGGAAGAAAGAAACAAGAAGCGCAAGGCAATAGAAGAAGATAGGAGGTTGGATCTCGTGTCCTTTACTTTACTGTATCTACTTTTGCTTTTACCATCTTATCTTCAAGTGTTCAATATTACTATGCAGATCTAAAGAAAGGAAAAGCAGGGAACGCGAGAGAGAATCAAGCAGGGATAGAGTTGATAACCGTGATCATGATCGCAGGAGTAAAGATCGCAGCTATGATCGTGAGCGTGACAGAAACAGAGACCGCTCTCGGAACTATGATTCAAGGAGTCACAGGAGATCACGTTCACGGTCAAGAGAAAGGTCAAGGGATTATGATCGCCACAGGTTCATATTTCTTTCACTTAGCATATGGCATTATATACACAATGTTGATCCTTGCAATGCCAAATCAATTGTATACACAGAGAAACGTAGTTTCAGTATAATTATATCCACTTGTTCAATATTCTCTTAACAGATTTTTTTTCCTCTTTCTCCAGGCGTCACGATCGCTACTAGGTGAAAGTTGCTGTGGCATGAGGAGTTGAAATCTTGTGTCTTAACTTGGTGGATGTTTGGTACTTGGTAGTATCTAGGAGCTGATGTCATATATATATACTGCTGTTTTTATTTGGTCGTTTTTGGATTATGAATTGGTTAGGGGGGTGAAGTTTGGTATTTGATTATCAAAATGACATTTTTTTATTGTACCAGCCTTTGAGATTTCTCCTCTTGTGGAGACAATAACCCATTTAAAAATTCTTAGGCTTGTTTTCGCCATC</genome_strand>
        <mrna_strand>CTCAC-T..................................................................................AAAATGGATATGGGGGCATGCCCTAAGGTGCATTCGTTGCCTCTAAGAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGAAGCAAAGGCAAAAGGTCAGGATAACTATGACAGGGACTTGGAGGATTTAATAGACAGGCTGATTGTTGAGTGTGACAGGAAAATAACTAGAGCCCTTAAAAGGCTTGATGAGGAGGATGCCAAAGCTGCTATTGCCATATCAGTATCTGAAGTTACCCTG...........................................................................................................................ACTCCGGAGATTGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGAAATCTTGTGTCTTAACTTGGTGGATGTTTGGTACTTGGTAGTATCTAGGAGCTGATGTCATATATATATACTGCTGTTTTTATTTGGTCGTTTTTGGATTATGAATTGGTTAGGGGGGTGAAGTTTGGTATTTGATTATCAAAATGACATTTTTTTATTGTACCAGCCTTTGAGATTTCTCCTCTTGTGGAGACAATAACCCATTTAAAAATTCTTAGGCTTGTTTTCGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336832" ref_strand="+" ref_description="SGN-E336832 [cTOE-5-F24]">
      <seq>ccatatcagtatctgaagttaccctgactccggagattgatgagttgtcaaagcaaattaaagagaagctgaaagaagctgacatacatgatcttgaaggtgagacagatatgaaaattcgagctttggaagaagttgaagaacttcgaactaagagagcagacaaacagtcaatgcttcttttggatgcattcaacaaggatcgagcatctttgccgcagccacttcagaatgctccacagttggcacccttgcctgcatctactccagatcctcgcatacaggaaatgattaatgagaaactgaagaaagcataagatcttggtgaacaaggaatggttgatgaagctcagaaagcattggaagaggcggaagctcttaagaagctacctgtgaggcaagaacctgtattggtgacaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="23855" stop="26879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24155" g_stop="24180" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24181" i_stop="24303" i_length="123">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24304" g_stop="24367" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="90" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24368" i_stop="25106" i_length="739">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25107" g_stop="25186" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="170" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25187" i_stop="25325" i_length="139">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25326" g_stop="25479" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="324" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25480" i_stop="26321" i_length="842">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26322" g_stop="26383" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="386" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26384" i_stop="26550" i_length="167">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.744" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26551" g_stop="26571" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="407" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E336832" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24155" e_stop="24180"/>
          <exon e_start="24304" e_stop="24367"/>
          <exon e_start="25107" e_stop="25186"/>
          <exon e_start="25326" e_stop="25479"/>
          <exon e_start="26322" e_stop="26383"/>
          <exon e_start="26551" e_stop="26571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATATCAGTATCTGAAGTTACCCTGGTAATTGTCAAGTTTGGGCTCTAAGCTCATTATTTTCTTTTGTTGGTCACTGGTACTTCCTCTTTGCCCTTCCTCCGTATACTTGTCATTGTTACAATTGTTTTCAACTTGTTTAAATTATAGACTCCGGAGATTGATGAGTTGTCAAAGCAAATTAAAGAGAAGCTGAAAGAAGCTGACATACATGGTAAGTTCTTTTAGATATTGCTGATTACCTGAATGCCACGTGAAAGTACCTTTTACAAGTCTTGCAAGCATGACTATGTAGTCTTGATTGGTTATTTCCCATTGTTAGGTTGCTCATATTTTACTTTTTTTGGTTGGTTGCATTTATACATAAATGACGAGTCAGCTTGTCAATTTATATCTCTCTTTGAGCATACAGAGGTTGAGGGAGTAAATTATACTTAATGATTGCTGGTGATATTATTCATCGATTTCTCAAAAAAAAATATTATGAGATTCATCATTACTTTGTCTCATAATTTTAAGCTGGAATGAGTTTTAGTTTCATTCTTGGATCTAGGTTGGCATCAACTAACATATGTGTCATAAGTAAATTTGATCATACTGTGATTTCAGAGTAACAAAATGTGAAGTGCTAATTGCACCCAAGGGTGTGGCCTAGCGGTCAATGTGAAGTGGTTGATAACCTGATGTCTCAGATTCATAACTCTACTGAAACAAAAAACACTAAGTGATTCTTCCCATCTTTCATAGACTATACCTGGTACTTGTTGTTGGTGGTAGGTGGCATGTTTGTGGAATAAGTCAAGGTGTGCGAAAGCTGGTTAGGACACCACTGTTATCAAAAATAAAAAGAAAATGTGAAGTGCTATTATTTTGTGGAATTTTCCTTCTGATGAAAAAACTCAATGTTTCTTTTTGAGTTGGCCAAGTTCTTGAATGATCTAACTTTTCTGCAGATCTTGAAGGTAAGACAGATATGAAAATTCGAGCTTTGGAAGAAGTTGAAGAACTTCGAACTAAGAGAGCAGACAAACAGGTATCAAAAGAACTTAGAGATGTTGAATTTTAGTTTGCCATTCAGTCAACTTGGCAAACATTAATGACATTGCTATACTTAACAGTTCACTCGGTAGTGTGTATTGTCAGAACTTATATTTTCTTATTTCGAATGGCAGTCAATGCTTCTTTTGGATGCATTCAACAAGGATCGAGCATCTTTGCCGCAGCCACTTCAGAATGCTCCACAGTTGGCACCCTTGCCTGCATCTACTCCAGATCCTCGCATACAGGAAATGATAAATGAGAAACTGAAGAAAGCAGAAGATCTTGGTATGTTGAAATCTAAATATTTATAAATTGGCATTGCTTACAACATCCTCCACTTCTTCTACAAGACTAGAAATCGCTTTTTGATATGCTCTATTCTGTCGACTCTCTCTTGGAGTAGTACAATCTCATTATTTTGGTATATGTCCATGCACTTGCGTACGGGCAGTTGAAAAGGAAAGTACCATCAGGAAACACTAGTGAGTAATTCTGGGTTTCAAAATGCTCCCTTGAGATTGTTATTGGTAAATACATGGGAAATGGCAGGGTATTATGTGACTGAAGTGGGAGATACTGTTTCGATTTTGATAATATGAAAAAAGATATCTTTTATTGCTGGACAATTGTTGTTCTACCTTGAGATCAGAACAGCCATATTCTGCTATAGAAGTTTGAAATAAATCTATGCTCATTTCAATTCATTTTGTTCATATTTATTTTATTCAATAAACCATCACCAAAGGTTGTAAGCCCTGGTGTGAAGTGTTGAGCTTGACCTCTAAAGATCATTATCAAATTTGTATGTGAGATTTTGTTACTCTGATCTCAATTTATGATGAAAATGCATTACTGGGAGGCTAAGGATAATTATCTGCACATATTCTCTGATCAGTAGTGAAAATTTTCCTAGAAGTGATTTAAGCAAGATGGAAGCATTTCTGTGTTTTAAACCTCAAATGAAGCTAAATGCCTGTTAATACACCTTGTACAGTTTCTTCTACTATCTTGTTGCACTTGCTTTTTGTGAATTGATCTAATATATAGAAAAGAGACTGTGTGGCAGGGTTGCTTTTGCTCAATGTTTTTTTTTAATCGTATACCTTTCCTTTTACCCTGGTATCTAGGTGAACAAGGAATGGTTGATGAAGCTCAGAAAGCATTGGAAGAGGCGGAAGCTCTTAAGAAGGTTGCCAAACAGTTTTGTTTGTACTTCAATTGTGCTTGATTATAACTTTTTAGTGTTCAAATCGCCCTTCTTTCCTTTCTCTATTTTTTTTGGCTCAAAACACTTCCCCTTCCAGTTCGACTACATTTAACATTTCTCTCCTTGATATGCCTGTCTACTTCATTCAGCTACCTGTGAGGCAAGAACCT</genome_strand>
        <mrna_strand>CCATATCAGTATCTGAAGTTACCCTG...........................................................................................................................ACTCCGGAGATTGATGAGTTGTCAAAGCAAATTAAAGAGAAGCTGAAAGAAGCTGACATACATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGAAGGTGAGACAGATATGAAAATTCGAGCTTTGGAAGAAGTTGAAGAACTTCGAACTAAGAGAGCAGACAAACAG...........................................................................................................................................TCAATGCTTCTTTTGGATGCATTCAACAAGGATCGAGCATCTTTGCCGCAGCCACTTCAGAATGCTCCACAGTTGGCACCCTTGCCTGCATCTACTCCAGATCCTCGCATACAGGAAATGATTAATGAGAAACTGAAGAAAGCATAAGATCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGGAATGGTTGATGAAGCTCAGAAAGCATTGGAAGAGGCGGAAGCTCTTAAGAAG.......................................................................................................................................................................CTACCTGTGAGGCAAGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324581" ref_strand="+" ref_description="SGN-E324581 [cTOC-9-P9]">
      <seq>ggagattgatgagttgtcaaagcaaattaaagagaagctgaaagaagctgacatacatgatcttgaaggtaagacagatatgaaaattcgagctttggaagaagttgaagaacttcgaactaagagagcagacaaacagtcaatgcttcttttggatgcattcaacaaggatcgagcatctttgccgcagccacttcagaatgctccacagttggcacccttgcctgcatctactccagatcctcgcatacaggaaatgataaatgagaaactgaagaaagcagaagatcttggtgaacaaggaatggttgatgaagctcagaaagcattggaagaggcggaagctcttaagaagctacctgtgaggcaagaacctgttcaagattcctcaaagtacactgcagttgatgtgcggattactgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="24009" stop="26913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24309" g_stop="24367" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24368" i_stop="25106" i_length="739">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25107" g_stop="25186" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="139" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25187" i_stop="25325" i_length="139">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25326" g_stop="25479" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="293" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25480" i_stop="26321" i_length="842">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26322" g_stop="26383" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="355" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26384" i_stop="26550" i_length="167">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.744" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26551" g_stop="26613" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="418" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E324581" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24309" e_stop="24367"/>
          <exon e_start="25107" e_stop="25186"/>
          <exon e_start="25326" e_stop="25479"/>
          <exon e_start="26322" e_stop="26383"/>
          <exon e_start="26551" e_stop="26613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTGATGAGTTGTCAAAGCAAATTAAAGAGAAGCTGAAAGAAGCTGACATACATGGTAAGTTCTTTTAGATATTGCTGATTACCTGAATGCCACGTGAAAGTACCTTTTACAAGTCTTGCAAGCATGACTATGTAGTCTTGATTGGTTATTTCCCATTGTTAGGTTGCTCATATTTTACTTTTTTTGGTTGGTTGCATTTATACATAAATGACGAGTCAGCTTGTCAATTTATATCTCTCTTTGAGCATACAGAGGTTGAGGGAGTAAATTATACTTAATGATTGCTGGTGATATTATTCATCGATTTCTCAAAAAAAAATATTATGAGATTCATCATTACTTTGTCTCATAATTTTAAGCTGGAATGAGTTTTAGTTTCATTCTTGGATCTAGGTTGGCATCAACTAACATATGTGTCATAAGTAAATTTGATCATACTGTGATTTCAGAGTAACAAAATGTGAAGTGCTAATTGCACCCAAGGGTGTGGCCTAGCGGTCAATGTGAAGTGGTTGATAACCTGATGTCTCAGATTCATAACTCTACTGAAACAAAAAACACTAAGTGATTCTTCCCATCTTTCATAGACTATACCTGGTACTTGTTGTTGGTGGTAGGTGGCATGTTTGTGGAATAAGTCAAGGTGTGCGAAAGCTGGTTAGGACACCACTGTTATCAAAAATAAAAAGAAAATGTGAAGTGCTATTATTTTGTGGAATTTTCCTTCTGATGAAAAAACTCAATGTTTCTTTTTGAGTTGGCCAAGTTCTTGAATGATCTAACTTTTCTGCAGATCTTGAAGGTAAGACAGATATGAAAATTCGAGCTTTGGAAGAAGTTGAAGAACTTCGAACTAAGAGAGCAGACAAACAGGTATCAAAAGAACTTAGAGATGTTGAATTTTAGTTTGCCATTCAGTCAACTTGGCAAACATTAATGACATTGCTATACTTAACAGTTCACTCGGTAGTGTGTATTGTCAGAACTTATATTTTCTTATTTCGAATGGCAGTCAATGCTTCTTTTGGATGCATTCAACAAGGATCGAGCATCTTTGCCGCAGCCACTTCAGAATGCTCCACAGTTGGCACCCTTGCCTGCATCTACTCCAGATCCTCGCATACAGGAAATGATAAATGAGAAACTGAAGAAAGCAGAAGATCTTGGTATGTTGAAATCTAAATATTTATAAATTGGCATTGCTTACAACATCCTCCACTTCTTCTACAAGACTAGAAATCGCTTTTTGATATGCTCTATTCTGTCGACTCTCTCTTGGAGTAGTACAATCTCATTATTTTGGTATATGTCCATGCACTTGCGTACGGGCAGTTGAAAAGGAAAGTACCATCAGGAAACACTAGTGAGTAATTCTGGGTTTCAAAATGCTCCCTTGAGATTGTTATTGGTAAATACATGGGAAATGGCAGGGTATTATGTGACTGAAGTGGGAGATACTGTTTCGATTTTGATAATATGAAAAAAGATATCTTTTATTGCTGGACAATTGTTGTTCTACCTTGAGATCAGAACAGCCATATTCTGCTATAGAAGTTTGAAATAAATCTATGCTCATTTCAATTCATTTTGTTCATATTTATTTTATTCAATAAACCATCACCAAAGGTTGTAAGCCCTGGTGTGAAGTGTTGAGCTTGACCTCTAAAGATCATTATCAAATTTGTATGTGAGATTTTGTTACTCTGATCTCAATTTATGATGAAAATGCATTACTGGGAGGCTAAGGATAATTATCTGCACATATTCTCTGATCAGTAGTGAAAATTTTCCTAGAAGTGATTTAAGCAAGATGGAAGCATTTCTGTGTTTTAAACCTCAAATGAAGCTAAATGCCTGTTAATACACCTTGTACAGTTTCTTCTACTATCTTGTTGCACTTGCTTTTTGTGAATTGATCTAATATATAGAAAAGAGACTGTGTGGCAGGGTTGCTTTTGCTCAATGTTTTTTTTTAATCGTATACCTTTCCTTTTACCCTGGTATCTAGGTGAACAAGGAATGGTTGATGAAGCTCAGAAAGCATTGGAAGAGGCGGAAGCTCTTAAGAAGGTTGCCAAACAGTTTTGTTTGTACTTCAATTGTGCTTGATTATAACTTTTTAGTGTTCAAATCGCCCTTCTTTCCTTTCTCTATTTTTTTTGGCTCAAAACACTTCCCCTTCCAGTTCGACTACATTTAACATTTCTCTCCTTGATATGCCTGTCTACTTCATTCAGCTACCTGTGAGGCAAGAACCTGTTCAGGATTCCTCAAAGTACACTGCAGTTGATGTGCGGATT</genome_strand>
        <mrna_strand>GGAGATTGATGAGTTGTCAAAGCAAATTAAAGAGAAGCTGAAAGAAGCTGACATACATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGAAGGTAAGACAGATATGAAAATTCGAGCTTTGGAAGAAGTTGAAGAACTTCGAACTAAGAGAGCAGACAAACAG...........................................................................................................................................TCAATGCTTCTTTTGGATGCATTCAACAAGGATCGAGCATCTTTGCCGCAGCCACTTCAGAATGCTCCACAGTTGGCACCCTTGCCTGCATCTACTCCAGATCCTCGCATACAGGAAATGATAAATGAGAAACTGAAGAAAGCAGAAGATCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGGAATGGTTGATGAAGCTCAGAAAGCATTGGAAGAGGCGGAAGCTCTTAAGAAG.......................................................................................................................................................................CTACCTGTGAGGCAAGAACCTGTTCAAGATTCCTCAAAGTACACTGCAGTTGATGTGCGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728822" ref_strand="+" ref_description="SGN-E728822 [LA19AC06]">
      <seq>attctcttctcctctctccttgtaccggcgagcaaaatgacgacgtcgttcggaactacggcgacaccggcagcatctgcttcaccggcggtatttccggccaaaaatgccccgaaatccttgactttgttacctttctgccatcatcgccattacaatcatttgcgttccaaattatctatcacgcccaaactccgattctcctgtaagggtctacaatctaattggaatcattcagtcgtaactagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggtatcagaggaagcaatatctaactttattagccaagtttcaagccttgtcaagctagttgattctagggatgttgtggagctgcagttaaaacaatttgattgtgaaattctaatccgtaagaaggaggcactaccacaaccacctgctcctgttcctgcacaagctccatttatacaatcatatcatgtaccatctatacaatctaatgcatctcctccacctgcacctgcaccttcacctgctccaattcaaacccctgcaccgtctccagctgcagcaaagtcagctgattcatctcttcctccgctcaaatccccaatggcagggacattctatagaagtccagcacccggtgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="29694" stop="33229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29994" g_stop="30203" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="264" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="410" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32621" g_stop="32929" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="719" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E728822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29994" e_stop="30203"/>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTTCTCCTCTCTCCTTGTACCGGCGAGCAAAATGACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAGGTAATACTATTCCTCTGCACTTTTGCTTTCTCAGTTTACTTTCCTTCAATTAATTTTGTGTTTACTGCCCTCTCTGTATGAAATATGCATATTATTTAGATTCAATGAGTTCGGAATGAATACGATTTGTTAAATGTGTACATTTTGGAAACAAATGCACTTATATATCTACCTAGCTCACTCTAGGTGCTACCGTGGTAGCATAAATCAAGCCATGTTTTTTGAGCTAAGTGTAATCCCACGAGTTTGGAGATGGTAGGATAGGAAAGGATGTATGCAGACTTTTAACTTCTACAGTTGCAGGGTGGAGAGGTTGTTTCTGATAGTCCCTCGGCTCAAAAGAAGTGTAAACAAATCATGATAGAATGGAAAATATTGACAAAAAAATTAGCATGATAAACAGATCAAATGAAGCAACATGTAATTGTGAGAATTGAAGAACGCATTACCAAACAGACTAAGAAAAGAAAAAATAAATAAATAAATTTGTGATTGATGTTATAAACTTATTTGTATATATTTTATTTATGCAAGTAGATAATGGTATGTCATGCATGATCTATTTTTATTTTGTTATATGGAGTAGGATTCACAATTTTTATCTGGGATGCAGATCACTACTGCAAATACTAGTGTATATGTACTGGAACAACATCTATAACGTCTTAATCATGAATTAGTTTGGACTCCGTTATATTTAGATATGATAAAACTACCGTTCAGTCTAAAACTAGTTAGGGTCGACATATTTTTAGAAATGATTTTCAGCTATACCATGTAGTTTGAATTGAGGTTACTGCGAAAGGATGTATTCGCCAATGGTTTTATTTCTATTCTTAGTATAATTTTATATCTTTTGGGTATTCTTTTTCTTGTGAAACTTGATATGAGAACACACGTAAAAGAAGTGAATATCTCCCAGATGAAATTGAAGCTGGAAATGGAAAAGACACCTTATATGTGATCTTAAATGCAACGAACGAAGTTGAGCTAATTAATTGGTGTAAAAGTTTCATCTTTGGTATTAATGGATGTTCAATTTTTAAAAAATGGTTTCATCCTTTTTATTTGTTCTGCTATTCTCTTTTCTGCTTTGCCATTAATATTGAGTAGAAAAGAGTATCCAGAGACCTTTGTTAATGATTTTTTCTGGGTCAGGGAAATTGACAAAGTAAACAACAACAAAAGTTATTTTAGTATTGTTTCATATTCTGAGAAAACCTAAAATATGTTGGAAACAATAAATTAACTGAAGACCTGCACTTGTATTAACATTGTCATTGTGTCCTACATACGCACAAGCATAATCTTTCTTACATATGTACTTGTGATTAAACCAAAACAATGTGTTCAGTTGAATCCATTGAACCCACTCTTGATCTGCCTCTGTGATGTAGTATCTTCTTTCCTCAACAGGTTTTCTGTTACTATGAAGACCCTATAGTTTCATTGGCAATCTTGTATCAATTGTAGTGATTTAATTCATTTGTTGAACTTTTTTTCAGATCAGCAAAAGGTATAATTTTGTTAATTAAACAACAATAAGACTTTGTTGAATAAGTACAACAAAAAGCAAATAATACATTCCCTTAATTCTGAATAAATATATTCATTTGTCAAACTTGAAAGAACCCTTCACAGAGCACTTTTAGTTTAAAGGAAAATGCCTCTTAAGAACATCAGGTAGAATTAAGATATTGTTTTGAGTGCATTTTCTTTTAGAAGTAGTTAGTAAAGGGTTGCTCTTATATCATTATACGAGAAGTTGATTCTGCAGCACTTATGCAACTATTCATGAGTTCTTCTCATCTCTTTTTTTCCTTCCATTGGAAAATGGTGATAGATTATATAATATGCTTAGAACTTGTCATATGAAAGAATTTTTTGGACCACCATCTCGAGTGGCCAAGTGATACCCTGTGTAACTCATTTAATGGAAGAACCAAAGTACAAACCCCATTTCCCAAATTTGTCAGAGATGTTTTTTCCATTTTTACTAGTACCAGAGGAAGAAAGGCTGATGTGACTATAATCTTTTTTTTTTGTAGGGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACC</genome_strand>
        <mrna_strand>ATTCTCTTCTCCTCTCTCCTTGTACCGGCGAGCAAAATGACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250967" ref_strand="+" ref_description="SGN-E250967 [cLEG-13-N3]">
      <seq>tctctccttgtaccggcgagcaaaatgacgacgtctgtcggaactacggcgacaccggcagcatctgcttcaccggcggtatttccggccaaaaatgccccgaaatccttgactttgttacctttctgccatcatcgccattacaatcatttgcgttccaaattatttattacgcccaaactccgattctcctgtaagggtctacaatctaattggaatcattcagtcgtaactagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggtatcagaggaagcaatatctaactttattagccaagtttcaagccttgtcaagctagttgattctagggatgttgtggagctgcagttaaaacaatttgattgtgaaattctaatccgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="29706" stop="32990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30006" g_stop="30203" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="252" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="398" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32621" g_stop="32690" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="468" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E250967" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30006" e_stop="30203"/>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCTTGTACCGGCGAGCAAAATGACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAGGTAATACTATTCCTCTGCACTTTTGCTTTCTCAGTTTACTTTCCTTCAATTAATTTTGTGTTTACTGCCCTCTCTGTATGAAATATGCATATTATTTAGATTCAATGAGTTCGGAATGAATACGATTTGTTAAATGTGTACATTTTGGAAACAAATGCACTTATATATCTACCTAGCTCACTCTAGGTGCTACCGTGGTAGCATAAATCAAGCCATGTTTTTTGAGCTAAGTGTAATCCCACGAGTTTGGAGATGGTAGGATAGGAAAGGATGTATGCAGACTTTTAACTTCTACAGTTGCAGGGTGGAGAGGTTGTTTCTGATAGTCCCTCGGCTCAAAAGAAGTGTAAACAAATCATGATAGAATGGAAAATATTGACAAAAAAATTAGCATGATAAACAGATCAAATGAAGCAACATGTAATTGTGAGAATTGAAGAACGCATTACCAAACAGACTAAGAAAAGAAAAAATAAATAAATAAATTTGTGATTGATGTTATAAACTTATTTGTATATATTTTATTTATGCAAGTAGATAATGGTATGTCATGCATGATCTATTTTTATTTTGTTATATGGAGTAGGATTCACAATTTTTATCTGGGATGCAGATCACTACTGCAAATACTAGTGTATATGTACTGGAACAACATCTATAACGTCTTAATCATGAATTAGTTTGGACTCCGTTATATTTAGATATGATAAAACTACCGTTCAGTCTAAAACTAGTTAGGGTCGACATATTTTTAGAAATGATTTTCAGCTATACCATGTAGTTTGAATTGAGGTTACTGCGAAAGGATGTATTCGCCAATGGTTTTATTTCTATTCTTAGTATAATTTTATATCTTTTGGGTATTCTTTTTCTTGTGAAACTTGATATGAGAACACACGTAAAAGAAGTGAATATCTCCCAGATGAAATTGAAGCTGGAAATGGAAAAGACACCTTATATGTGATCTTAAATGCAACGAACGAAGTTGAGCTAATTAATTGGTGTAAAAGTTTCATCTTTGGTATTAATGGATGTTCAATTTTTAAAAAATGGTTTCATCCTTTTTATTTGTTCTGCTATTCTCTTTTCTGCTTTGCCATTAATATTGAGTAGAAAAGAGTATCCAGAGACCTTTGTTAATGATTTTTTCTGGGTCAGGGAAATTGACAAAGTAAACAACAACAAAAGTTATTTTAGTATTGTTTCATATTCTGAGAAAACCTAAAATATGTTGGAAACAATAAATTAACTGAAGACCTGCACTTGTATTAACATTGTCATTGTGTCCTACATACGCACAAGCATAATCTTTCTTACATATGTACTTGTGATTAAACCAAAACAATGTGTTCAGTTGAATCCATTGAACCCACTCTTGATCTGCCTCTGTGATGTAGTATCTTCTTTCCTCAACAGGTTTTCTGTTACTATGAAGACCCTATAGTTTCATTGGCAATCTTGTATCAATTGTAGTGATTTAATTCATTTGTTGAACTTTTTTTCAGATCAGCAAAAGGTATAATTTTGTTAATTAAACAACAATAAGACTTTGTTGAATAAGTACAACAAAAAGCAAATAATACATTCCCTTAATTCTGAATAAATATATTCATTTGTCAAACTTGAAAGAACCCTTCACAGAGCACTTTTAGTTTAAAGGAAAATGCCTCTTAAGAACATCAGGTAGAATTAAGATATTGTTTTGAGTGCATTTTCTTTTAGAAGTAGTTAGTAAAGGGTTGCTCTTATATCATTATACGAGAAGTTGATTCTGCAGCACTTATGCAACTATTCATGAGTTCTTCTCATCTCTTTTTTTCCTTCCATTGGAAAATGGTGATAGATTATATAATATGCTTAGAACTTGTCATATGAAAGAATTTTTTGGACCACCATCTCGAGTGGCCAAGTGATACCCTGTGTAACTCATTTAATGGAAGAACCAAAGTACAAACCCCATTTCCCAAATTTGTCAGAGATGTTTTTTCCATTTTTACTAGTACCAGAGGAAGAAAGGCTGATGTGACTATAATCTTTTTTTTTTGTAGGGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAG</genome_strand>
        <mrna_strand>TCTCTCCTTGTACCGGCGAGCAAAATGACGACGTCTGTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATTTATTACGCCCAAACTCCGATTCTCCTGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747523" ref_strand="+" ref_description="SGN-E747523 [GI|29169308]">
      <seq>gaattcggcaccttgtaccggcgagcaaaatgacgacgtcgttcggaactacggcgacaccggcagcatctgcttcaccggcggtatttccggccaaaaatgccccgaaatccttgactttgttacctttctgccatcatcgccattacaatcatttgcgttccaaattatctatcacgcccaaactccgattctcctgtaagggtctacaatctaattggaatcattcagtcgtaactagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggtatcagaggaagcaatatctaactttattagccaagtttcaagccttgtcaagctagttgattctagggatgttgtggagctgcagttaaaacaatttgattgtgaaattctaatccgtaagaaggaggcactaccacaaccacctgctcctgttcctgcacaagctccatttatacaatcatatcatgtaccatctatacaatctaatgcatctcctccacctgcacctgcaccttcacctgctccaattcaaacccctgcaccgtctccagctgcagcaaagtcagctgattcatctcttcctccgctcaaatccccaatggcagggacattctatagaagtccagcacccggtgaaccagcatttgtgaaggtcggagacaaagtgcagaagggtcaagttctttgcattattgaagcgatgaagttgatgaacgaaatagaggctgatcgatcaggaaccatcgttgaggttgttgctgaagatggaaaacctgtcagtgttgatactcctctgtttgtgatcaagccatagaaccgttcgagtaagacccgggaaacaatatgcagaggaacttggcaagtgtttgtttaccttgggcttatgatattttgcagtatttcagtttcagtgagtatgtttgcaatgactggtagcgtgatggaaattggaatagacgattctggttaaaactcattaggagagtttagtgtttaatctgaggtattctttggcattttattgtgggattctagcttactcattttttcctttttcagtttgacatatttatgtgaggtttgtacctcgataacaatctcatcgcattatgataaggattgtatgcagttttgattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="29709" stop="36166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30011" g_stop="30203" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="203" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="257" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="403" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32621" g_stop="32942" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="725" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32943" i_stop="33068" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33069" g_stop="33140" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="797" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33141" i_stop="35369" i_length="2229">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35370" g_stop="35435" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="863" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="35519" g_stop="35870" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="1215" r_length="352" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E747523" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1205</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30011" e_stop="30203"/>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32942"/>
          <exon e_start="33069" e_stop="33140"/>
          <exon e_start="35370" e_stop="35435"/>
          <exon e_start="35519" e_stop="35870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGTACCGGCGAGCAAAATGACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAGGTAATACTATTCCTCTGCACTTTTGCTTTCTCAGTTTACTTTCCTTCAATTAATTTTGTGTTTACTGCCCTCTCTGTATGAAATATGCATATTATTTAGATTCAATGAGTTCGGAATGAATACGATTTGTTAAATGTGTACATTTTGGAAACAAATGCACTTATATATCTACCTAGCTCACTCTAGGTGCTACCGTGGTAGCATAAATCAAGCCATGTTTTTTGAGCTAAGTGTAATCCCACGAGTTTGGAGATGGTAGGATAGGAAAGGATGTATGCAGACTTTTAACTTCTACAGTTGCAGGGTGGAGAGGTTGTTTCTGATAGTCCCTCGGCTCAAAAGAAGTGTAAACAAATCATGATAGAATGGAAAATATTGACAAAAAAATTAGCATGATAAACAGATCAAATGAAGCAACATGTAATTGTGAGAATTGAAGAACGCATTACCAAACAGACTAAGAAAAGAAAAAATAAATAAATAAATTTGTGATTGATGTTATAAACTTATTTGTATATATTTTATTTATGCAAGTAGATAATGGTATGTCATGCATGATCTATTTTTATTTTGTTATATGGAGTAGGATTCACAATTTTTATCTGGGATGCAGATCACTACTGCAAATACTAGTGTATATGTACTGGAACAACATCTATAACGTCTTAATCATGAATTAGTTTGGACTCCGTTATATTTAGATATGATAAAACTACCGTTCAGTCTAAAACTAGTTAGGGTCGACATATTTTTAGAAATGATTTTCAGCTATACCATGTAGTTTGAATTGAGGTTACTGCGAAAGGATGTATTCGCCAATGGTTTTATTTCTATTCTTAGTATAATTTTATATCTTTTGGGTATTCTTTTTCTTGTGAAACTTGATATGAGAACACACGTAAAAGAAGTGAATATCTCCCAGATGAAATTGAAGCTGGAAATGGAAAAGACACCTTATATGTGATCTTAAATGCAACGAACGAAGTTGAGCTAATTAATTGGTGTAAAAGTTTCATCTTTGGTATTAATGGATGTTCAATTTTTAAAAAATGGTTTCATCCTTTTTATTTGTTCTGCTATTCTCTTTTCTGCTTTGCCATTAATATTGAGTAGAAAAGAGTATCCAGAGACCTTTGTTAATGATTTTTTCTGGGTCAGGGAAATTGACAAAGTAAACAACAACAAAAGTTATTTTAGTATTGTTTCATATTCTGAGAAAACCTAAAATATGTTGGAAACAATAAATTAACTGAAGACCTGCACTTGTATTAACATTGTCATTGTGTCCTACATACGCACAAGCATAATCTTTCTTACATATGTACTTGTGATTAAACCAAAACAATGTGTTCAGTTGAATCCATTGAACCCACTCTTGATCTGCCTCTGTGATGTAGTATCTTCTTTCCTCAACAGGTTTTCTGTTACTATGAAGACCCTATAGTTTCATTGGCAATCTTGTATCAATTGTAGTGATTTAATTCATTTGTTGAACTTTTTTTCAGATCAGCAAAAGGTATAATTTTGTTAATTAAACAACAATAAGACTTTGTTGAATAAGTACAACAAAAAGCAAATAATACATTCCCTTAATTCTGAATAAATATATTCATTTGTCAAACTTGAAAGAACCCTTCACAGAGCACTTTTAGTTTAAAGGAAAATGCCTCTTAAGAACATCAGGTAGAATTAAGATATTGTTTTGAGTGCATTTTCTTTTAGAAGTAGTTAGTAAAGGGTTGCTCTTATATCATTATACGAGAAGTTGATTCTGCAGCACTTATGCAACTATTCATGAGTTCTTCTCATCTCTTTTTTTCCTTCCATTGGAAAATGGTGATAGATTATATAATATGCTTAGAACTTGTCATATGAAAGAATTTTTTGGACCACCATCTCGAGTGGCCAAGTGATACCCTGTGTAACTCATTTAATGGAAGAACCAAAGTACAAACCCCATTTCCCAAATTTGTCAGAGATGTTTTTTCCATTTTTACTAGTACCAGAGGAAGAAAGGCTGATGTGACTATAATCTTTTTTTTTTGTAGGGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAGGTACTGCATGTCCATCTTTTATGTAATAAATTCTAATATGGAAACCTCAAAGATTAAAAAAGTTGAAGTTTATGGTTTAACGCGCTCTCTCAATGCATTTGGTTTCCATGATATGCATTACAACAGGTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAGGTAACCTTTTCCTTTGGTTATTGCCAATGCCTGCTATATTGTTTTCTTGTACTTATACGATACCTCTGTTTTTTAACTATTTTTAAATTTATATATCTGCTTTTAAATTGGTGCCAAAAGAATTGTCTTCTTACCTGCACAACTTTTAGAAAGGCATTGAAATAAATTGAAATCATGATTAGCAATTGTTTGCTCAAATATCAAAGAAATTATTTATTGCCTCTCTGCTGTTTTTTTCCCAGTGTGGAATAGAAGTAGCATCAATTCATCACAACTCTCAAAAAGATGCAGGAAAGAAAGATTGCATTTGACTTCTAATGTATAAACCTGCTTTCTACTTATACAACATGAGTTCTCCAAAAGGATGACCTAGTGGTTGAGGCATGAGAGATCCCAGGTTCTCATTCTAGCTACCACATTTGTTTGACCCATGCTCTAGCCTTGAGAAGAGGATTACCTTGGGAACTTATACCTGTGGGCTGTCCACGCTGTGTGATGTATTAGTGGGGTGCACAAGCTAGCTTGAGACAAAATGCTTTGGGTTGTCATTTTACCATCTAACGACTCCTTTCCAAAACTGATGTCCGTTGGTTTTGCTAGAGCTTGCAAATTTGTAAAAGAAAATGAACAGGAGAAATACTAAGTATCTCTAAATACAACGTTTCTACTCTACTAGTCCAGACCACATCCAATATATATATATTGGAAAAACTATATATTTCTAGTCTACCAAACAAATTAAGAATTTTTTTTCTTGGACTATTTAATTATATAATTAGAAGTAGTAAAGGAAGATACCCCAAGGATTCTGGGGGTTTCAATGGTGATGTACATGCTTAGATTTTATATACTTGTAGTGGCACTTCGGGGCTTGTGGATTGTTTGGGTATGCCGCATGCTTAAACTTTGATGATACTTAGTGGATCTAGTTTGGACATGTAAGGTTTGCTATGAAATGTACATAATGTTTGGGAATACCTTTTTCTACTTGAGATTCATCTGGTAATTGGTATAGTAACATTTTTACTGTCATTGTAGACTCAGCAACATCCTTTGGTGCTATTCTAAATTAGAACAACAACATACTCAGTGTGATCCCACAAGTGGGAAGAGGGGGAGGGTACTCTGTTTTTATTCATTATTTATTTTGTTACTGCATTATTCTCTTCATTTGTATGTAATAAATATATGCTTTTGTGTTAGCAATTCTATTTAGAATTGGCAATTGGCATAGAGTTGACAATGAATCAGTGAAGTCTTCTTTTCATGTAGATGAGTATAAGTATATGTCTTAGTGGTTAGGAAGTGATCAAAGAAGTTGAGGGGGCTTGTTGTTCCTTTGAATGGTTGAAGCCCGCGGATTTAGAAATAAGGGGGAAATCTAAATCTTGTTTGAGAATTGTAACTTCTTTATTTGTATTTTTTGAAAGAAAAAATAAAATTTGAAGAGTATATGTGGAGCAGGCATTCAGTGTTTATTATTTTATAACTATACTGGGAATCCATAAGTTTTATTTATTTTATATCCCCCTCATTCTTCGTTCTCTAACATGTTGGAAGTTTTATCTCTGCTGGAGTTGTCATGTAGATGAACTCATGCCAGTTTCAATAAAATGCTTGTAAGTAAGTGGCAGAAGTTTCATGTTTCCTTGCCCTCATGTTGCAGAGAAATCCTTTCTTGTCGACCTGATGAAATTTTGTGGAAACTAGTGGTAGTTATGACTGATGTTGCTATTTCACCTATGTCGTCCCACTATGAACTAATAGTTACATCAAAGCTTGTTCCACTGTATGTAATACTTGGAAGACATTAGAGAGTTGATGAGAGAATGATGATAGGAAACTTTGGCTAGTTCAGTTAAAGCATTCATTTGTTGTTTCACTCAAAGACAACATAATGTCCATTAAATCCCAAAAGCTAGCTTAAGAGGTGAACGTTGCACAACATCATATAAGGAGACAATAATCACATTTGTTCAATAGACATAGGAGGATCTAACAGCCTCACCCCACACGCTCTAGCTTGTCTAACTGGAGCGTGAATAACGTAAAGCTGGGTTCTGATATCCATGAAGTAGACCTTGCCTGTAGCTTAACCTCAAAAGTTAGGTCATGCAATGAGGATAAAGACCATACGAGGAGACAACCTATTTCTACCTGCCAATATGGGGCAATTTGAAAGTTATCCTTCCCAAAATTTGACTGCTATGCTCTGTCTGTTCCCTTCAGGCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACTGTGAGTTTCTTGACTAACCTAATCCAACTATTCAGTTTTGTGAACTCCATTTCCTTCCTAATATCGTATTTATCTCTCTGCAGCCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTA</genome_strand>
        <mrna_strand>CCTTGTACCGGCGAGCAAAATGACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAG..............................................................................................................................GTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACT...................................................................................CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336576" ref_strand="+" ref_description="SGN-E336576 [cTOE-4-C2]">
      <seq>caaaatgacgacgtttttttgaactacggcgacaccggcagcatctgcttcaccggcggtatttccggccaaaaatgccccgaaatccttgactttgttacctttctgccatcatcgccattacaannntttgcgttccaaattatctatcacgcccaaactccgattcttctgtaagggtctacaatctaattggaatcattcagtcgtaactagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggtatcagaggaagcaatttctaactttattagccaagtttcaagccttgtcaagctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="29726" stop="32847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30026" g_stop="30203" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="232" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="378" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32621" g_stop="32625" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="383" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E336576" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30026" e_stop="30203"/>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAGGTAATACTATTCCTCTGCACTTTTGCTTTCTCAGTTTACTTTCCTTCAATTAATTTTGTGTTTACTGCCCTCTCTGTATGAAATATGCATATTATTTAGATTCAATGAGTTCGGAATGAATACGATTTGTTAAATGTGTACATTTTGGAAACAAATGCACTTATATATCTACCTAGCTCACTCTAGGTGCTACCGTGGTAGCATAAATCAAGCCATGTTTTTTGAGCTAAGTGTAATCCCACGAGTTTGGAGATGGTAGGATAGGAAAGGATGTATGCAGACTTTTAACTTCTACAGTTGCAGGGTGGAGAGGTTGTTTCTGATAGTCCCTCGGCTCAAAAGAAGTGTAAACAAATCATGATAGAATGGAAAATATTGACAAAAAAATTAGCATGATAAACAGATCAAATGAAGCAACATGTAATTGTGAGAATTGAAGAACGCATTACCAAACAGACTAAGAAAAGAAAAAATAAATAAATAAATTTGTGATTGATGTTATAAACTTATTTGTATATATTTTATTTATGCAAGTAGATAATGGTATGTCATGCATGATCTATTTTTATTTTGTTATATGGAGTAGGATTCACAATTTTTATCTGGGATGCAGATCACTACTGCAAATACTAGTGTATATGTACTGGAACAACATCTATAACGTCTTAATCATGAATTAGTTTGGACTCCGTTATATTTAGATATGATAAAACTACCGTTCAGTCTAAAACTAGTTAGGGTCGACATATTTTTAGAAATGATTTTCAGCTATACCATGTAGTTTGAATTGAGGTTACTGCGAAAGGATGTATTCGCCAATGGTTTTATTTCTATTCTTAGTATAATTTTATATCTTTTGGGTATTCTTTTTCTTGTGAAACTTGATATGAGAACACACGTAAAAGAAGTGAATATCTCCCAGATGAAATTGAAGCTGGAAATGGAAAAGACACCTTATATGTGATCTTAAATGCAACGAACGAAGTTGAGCTAATTAATTGGTGTAAAAGTTTCATCTTTGGTATTAATGGATGTTCAATTTTTAAAAAATGGTTTCATCCTTTTTATTTGTTCTGCTATTCTCTTTTCTGCTTTGCCATTAATATTGAGTAGAAAAGAGTATCCAGAGACCTTTGTTAATGATTTTTTCTGGGTCAGGGAAATTGACAAAGTAAACAACAACAAAAGTTATTTTAGTATTGTTTCATATTCTGAGAAAACCTAAAATATGTTGGAAACAATAAATTAACTGAAGACCTGCACTTGTATTAACATTGTCATTGTGTCCTACATACGCACAAGCATAATCTTTCTTACATATGTACTTGTGATTAAACCAAAACAATGTGTTCAGTTGAATCCATTGAACCCACTCTTGATCTGCCTCTGTGATGTAGTATCTTCTTTCCTCAACAGGTTTTCTGTTACTATGAAGACCCTATAGTTTCATTGGCAATCTTGTATCAATTGTAGTGATTTAATTCATTTGTTGAACTTTTTTTCAGATCAGCAAAAGGTATAATTTTGTTAATTAAACAACAATAAGACTTTGTTGAATAAGTACAACAAAAAGCAAATAATACATTCCCTTAATTCTGAATAAATATATTCATTTGTCAAACTTGAAAGAACCCTTCACAGAGCACTTTTAGTTTAAAGGAAAATGCCTCTTAAGAACATCAGGTAGAATTAAGATATTGTTTTGAGTGCATTTTCTTTTAGAAGTAGTTAGTAAAGGGTTGCTCTTATATCATTATACGAGAAGTTGATTCTGCAGCACTTATGCAACTATTCATGAGTTCTTCTCATCTCTTTTTTTCCTTCCATTGGAAAATGGTGATAGATTATATAATATGCTTAGAACTTGTCATATGAAAGAATTTTTTGGACCACCATCTCGAGTGGCCAAGTGATACCCTGTGTAACTCATTTAATGGAAGAACCAAAGTACAAACCCCATTTCCCAAATTTGTCAGAGATGTTTTTTCCATTTTTACTAGTACCAGAGGAAGAAAGGCTGATGTGACTATAATCTTTTTTTTTTGTAGGGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAG</genome_strand>
        <mrna_strand>CAAAATGACGACGTTTTTTTGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAANNNTTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTTCTGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATTTCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347505" ref_strand="+" ref_description="SGN-E347505 [cTOF-33-N4]">
      <seq>gacgacgtcgttcggaactacggcgacaccggcagcatctgcttcaccggcggtatttccggccaaaaatgccccgaaatccttgactttgttacctttctgccatcatcgccattacaatcatttgcgttccaaattatctatcacgcccaaactccgattctcctgtaagggtctacaatctaattggaatcattcagtcgtaactagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggtatcagaggaagcaatatctaactntattagccaagtttcaagccttgtcaagctagttgattctagggatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="29732" stop="32942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30032" g_stop="30203" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="226" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="372" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32621" g_stop="32642" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="394" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E347505" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30032" e_stop="30203"/>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAGGTAATACTATTCCTCTGCACTTTTGCTTTCTCAGTTTACTTTCCTTCAATTAATTTTGTGTTTACTGCCCTCTCTGTATGAAATATGCATATTATTTAGATTCAATGAGTTCGGAATGAATACGATTTGTTAAATGTGTACATTTTGGAAACAAATGCACTTATATATCTACCTAGCTCACTCTAGGTGCTACCGTGGTAGCATAAATCAAGCCATGTTTTTTGAGCTAAGTGTAATCCCACGAGTTTGGAGATGGTAGGATAGGAAAGGATGTATGCAGACTTTTAACTTCTACAGTTGCAGGGTGGAGAGGTTGTTTCTGATAGTCCCTCGGCTCAAAAGAAGTGTAAACAAATCATGATAGAATGGAAAATATTGACAAAAAAATTAGCATGATAAACAGATCAAATGAAGCAACATGTAATTGTGAGAATTGAAGAACGCATTACCAAACAGACTAAGAAAAGAAAAAATAAATAAATAAATTTGTGATTGATGTTATAAACTTATTTGTATATATTTTATTTATGCAAGTAGATAATGGTATGTCATGCATGATCTATTTTTATTTTGTTATATGGAGTAGGATTCACAATTTTTATCTGGGATGCAGATCACTACTGCAAATACTAGTGTATATGTACTGGAACAACATCTATAACGTCTTAATCATGAATTAGTTTGGACTCCGTTATATTTAGATATGATAAAACTACCGTTCAGTCTAAAACTAGTTAGGGTCGACATATTTTTAGAAATGATTTTCAGCTATACCATGTAGTTTGAATTGAGGTTACTGCGAAAGGATGTATTCGCCAATGGTTTTATTTCTATTCTTAGTATAATTTTATATCTTTTGGGTATTCTTTTTCTTGTGAAACTTGATATGAGAACACACGTAAAAGAAGTGAATATCTCCCAGATGAAATTGAAGCTGGAAATGGAAAAGACACCTTATATGTGATCTTAAATGCAACGAACGAAGTTGAGCTAATTAATTGGTGTAAAAGTTTCATCTTTGGTATTAATGGATGTTCAATTTTTAAAAAATGGTTTCATCCTTTTTATTTGTTCTGCTATTCTCTTTTCTGCTTTGCCATTAATATTGAGTAGAAAAGAGTATCCAGAGACCTTTGTTAATGATTTTTTCTGGGTCAGGGAAATTGACAAAGTAAACAACAACAAAAGTTATTTTAGTATTGTTTCATATTCTGAGAAAACCTAAAATATGTTGGAAACAATAAATTAACTGAAGACCTGCACTTGTATTAACATTGTCATTGTGTCCTACATACGCACAAGCATAATCTTTCTTACATATGTACTTGTGATTAAACCAAAACAATGTGTTCAGTTGAATCCATTGAACCCACTCTTGATCTGCCTCTGTGATGTAGTATCTTCTTTCCTCAACAGGTTTTCTGTTACTATGAAGACCCTATAGTTTCATTGGCAATCTTGTATCAATTGTAGTGATTTAATTCATTTGTTGAACTTTTTTTCAGATCAGCAAAAGGTATAATTTTGTTAATTAAACAACAATAAGACTTTGTTGAATAAGTACAACAAAAAGCAAATAATACATTCCCTTAATTCTGAATAAATATATTCATTTGTCAAACTTGAAAGAACCCTTCACAGAGCACTTTTAGTTTAAAGGAAAATGCCTCTTAAGAACATCAGGTAGAATTAAGATATTGTTTTGAGTGCATTTTCTTTTAGAAGTAGTTAGTAAAGGGTTGCTCTTATATCATTATACGAGAAGTTGATTCTGCAGCACTTATGCAACTATTCATGAGTTCTTCTCATCTCTTTTTTTCCTTCCATTGGAAAATGGTGATAGATTATATAATATGCTTAGAACTTGTCATATGAAAGAATTTTTTGGACCACCATCTCGAGTGGCCAAGTGATACCCTGTGTAACTCATTTAATGGAAGAACCAAAGTACAAACCCCATTTCCCAAATTTGTCAGAGATGTTTTTTCCATTTTTACTAGTACCAGAGGAAGAAAGGCTGATGTGACTATAATCTTTTTTTTTTGTAGGGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTT</genome_strand>
        <mrna_strand>GACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTNTATTAGCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697495" ref_strand="+" ref_description="SGN-E697495 [FA03AF07]">
      <seq>ccccttaaagcgttcggaactacggcgacaccggcagcatctgccccaccggcggtatttccggccaaaaatgccccgaaatccttgactttgttacctttctgccatcatcgccattacaatcatttgcgttccaaattatctatcacgcccaaactccgattctcctgtaagggtctacaatctaattggaatcattcagtcgtaactagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggtatcagaggaagcaatatctaactttattagccaagtttcaagccttgtcaagctagttgattctagggatgttgtggagctgcagttaaaacaatttgattgtgaaattctaatccgtaagaaggaggcactaccacaaccacctgctcctgttcctgcacaagctccatttatacaatcatatcatgtaccatctatacaatctaatgcatctcctccacctgcacctgcaccttcacctgctccaattcaaaccccctgcaccgtctccagctgcagcaaagtcagctgattcatctcttcctccgctcaaatccccaatggcagggaaattctatagaagtccagcacccggtgaaccagcatttgtgaaagtcggagacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="29736" stop="33256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30040" g_stop="30203" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="174" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="228" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="374" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32621" g_stop="32942" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="697" r_length="323" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32943" i_stop="33068" i_length="126">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.879" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33069" g_stop="33081" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="710" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E697495" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30040" e_stop="30203"/>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32942"/>
          <exon e_start="33069" e_stop="33081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAGGTAATACTATTCCTCTGCACTTTTGCTTTCTCAGTTTACTTTCCTTCAATTAATTTTGTGTTTACTGCCCTCTCTGTATGAAATATGCATATTATTTAGATTCAATGAGTTCGGAATGAATACGATTTGTTAAATGTGTACATTTTGGAAACAAATGCACTTATATATCTACCTAGCTCACTCTAGGTGCTACCGTGGTAGCATAAATCAAGCCATGTTTTTTGAGCTAAGTGTAATCCCACGAGTTTGGAGATGGTAGGATAGGAAAGGATGTATGCAGACTTTTAACTTCTACAGTTGCAGGGTGGAGAGGTTGTTTCTGATAGTCCCTCGGCTCAAAAGAAGTGTAAACAAATCATGATAGAATGGAAAATATTGACAAAAAAATTAGCATGATAAACAGATCAAATGAAGCAACATGTAATTGTGAGAATTGAAGAACGCATTACCAAACAGACTAAGAAAAGAAAAAATAAATAAATAAATTTGTGATTGATGTTATAAACTTATTTGTATATATTTTATTTATGCAAGTAGATAATGGTATGTCATGCATGATCTATTTTTATTTTGTTATATGGAGTAGGATTCACAATTTTTATCTGGGATGCAGATCACTACTGCAAATACTAGTGTATATGTACTGGAACAACATCTATAACGTCTTAATCATGAATTAGTTTGGACTCCGTTATATTTAGATATGATAAAACTACCGTTCAGTCTAAAACTAGTTAGGGTCGACATATTTTTAGAAATGATTTTCAGCTATACCATGTAGTTTGAATTGAGGTTACTGCGAAAGGATGTATTCGCCAATGGTTTTATTTCTATTCTTAGTATAATTTTATATCTTTTGGGTATTCTTTTTCTTGTGAAACTTGATATGAGAACACACGTAAAAGAAGTGAATATCTCCCAGATGAAATTGAAGCTGGAAATGGAAAAGACACCTTATATGTGATCTTAAATGCAACGAACGAAGTTGAGCTAATTAATTGGTGTAAAAGTTTCATCTTTGGTATTAATGGATGTTCAATTTTTAAAAAATGGTTTCATCCTTTTTATTTGTTCTGCTATTCTCTTTTCTGCTTTGCCATTAATATTGAGTAGAAAAGAGTATCCAGAGACCTTTGTTAATGATTTTTTCTGGGTCAGGGAAATTGACAAAGTAAACAACAACAAAAGTTATTTTAGTATTGTTTCATATTCTGAGAAAACCTAAAATATGTTGGAAACAATAAATTAACTGAAGACCTGCACTTGTATTAACATTGTCATTGTGTCCTACATACGCACAAGCATAATCTTTCTTACATATGTACTTGTGATTAAACCAAAACAATGTGTTCAGTTGAATCCATTGAACCCACTCTTGATCTGCCTCTGTGATGTAGTATCTTCTTTCCTCAACAGGTTTTCTGTTACTATGAAGACCCTATAGTTTCATTGGCAATCTTGTATCAATTGTAGTGATTTAATTCATTTGTTGAACTTTTTTTCAGATCAGCAAAAGGTATAATTTTGTTAATTAAACAACAATAAGACTTTGTTGAATAAGTACAACAAAAAGCAAATAATACATTCCCTTAATTCTGAATAAATATATTCATTTGTCAAACTTGAAAGAACCCTTCACAGAGCACTTTTAGTTTAAAGGAAAATGCCTCTTAAGAACATCAGGTAGAATTAAGATATTGTTTTGAGTGCATTTTCTTTTAGAAGTAGTTAGTAAAGGGTTGCTCTTATATCATTATACGAGAAGTTGATTCTGCAGCACTTATGCAACTATTCATGAGTTCTTCTCATCTCTTTTTTTCCTTCCATTGGAAAATGGTGATAGATTATATAATATGCTTAGAACTTGTCATATGAAAGAATTTTTTGGACCACCATCTCGAGTGGCCAAGTGATACCCTGTGTAACTCATTTAATGGAAGAACCAAAGTACAAACCCCATTTCCCAAATTTGTCAGAGATGTTTTTTCCATTTTTACTAGTACCAGAGGAAGAAAGGCTGATGTGACTATAATCTTTTTTTTTTGTAGGGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAA-CCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAGGTACTGCATGTCCATCTTTTATGTAATAAATTCTAATATGGAAACCTCAAAGATTAAAAAAGTTGAAGTTTATGGTTTAACGCGCTCTCTCAATGCATTTGGTTTCCATGATATGCATTACAACAGGTCGGAGACAAAG</genome_strand>
        <mrna_strand>CGTTCGGAACTACGGCGACACCGGCAGCATCTGCCCCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGAAATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAA..............................................................................................................................GTCGGAGACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547901" ref_strand="+" ref_description="SGN-E547901 [TUS-56-C3]">
      <seq>tctgcttcaccggcggtatttccggccaaaaatgccccgaaatccttgactttgttacctttctgccatcatcgccattacaatcatttgcgttccaaattatctatcacgcccaaactccgattctcctgtaagggtctacaatctaattggaatcattcagtcgtaactagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggtatcagaggaagcaatatctaactttattagccaagtttcaagccttgtcaagctagttgattctagggatgttgtggagctgcagttaaaacaatttgattgtgaaattctaatccgtaagaaggaggcactaccacaaccacctgctcctgttcctgcacaagctccatttatacaatcatatcatgtaccatctatacaatctaatgcatctcctccacctgcacctgcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="29769" stop="33104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30069" g_stop="30203" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="189" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="335" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32621" g_stop="32804" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="519" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E547901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30069" e_stop="30203"/>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAGGTAATACTATTCCTCTGCACTTTTGCTTTCTCAGTTTACTTTCCTTCAATTAATTTTGTGTTTACTGCCCTCTCTGTATGAAATATGCATATTATTTAGATTCAATGAGTTCGGAATGAATACGATTTGTTAAATGTGTACATTTTGGAAACAAATGCACTTATATATCTACCTAGCTCACTCTAGGTGCTACCGTGGTAGCATAAATCAAGCCATGTTTTTTGAGCTAAGTGTAATCCCACGAGTTTGGAGATGGTAGGATAGGAAAGGATGTATGCAGACTTTTAACTTCTACAGTTGCAGGGTGGAGAGGTTGTTTCTGATAGTCCCTCGGCTCAAAAGAAGTGTAAACAAATCATGATAGAATGGAAAATATTGACAAAAAAATTAGCATGATAAACAGATCAAATGAAGCAACATGTAATTGTGAGAATTGAAGAACGCATTACCAAACAGACTAAGAAAAGAAAAAATAAATAAATAAATTTGTGATTGATGTTATAAACTTATTTGTATATATTTTATTTATGCAAGTAGATAATGGTATGTCATGCATGATCTATTTTTATTTTGTTATATGGAGTAGGATTCACAATTTTTATCTGGGATGCAGATCACTACTGCAAATACTAGTGTATATGTACTGGAACAACATCTATAACGTCTTAATCATGAATTAGTTTGGACTCCGTTATATTTAGATATGATAAAACTACCGTTCAGTCTAAAACTAGTTAGGGTCGACATATTTTTAGAAATGATTTTCAGCTATACCATGTAGTTTGAATTGAGGTTACTGCGAAAGGATGTATTCGCCAATGGTTTTATTTCTATTCTTAGTATAATTTTATATCTTTTGGGTATTCTTTTTCTTGTGAAACTTGATATGAGAACACACGTAAAAGAAGTGAATATCTCCCAGATGAAATTGAAGCTGGAAATGGAAAAGACACCTTATATGTGATCTTAAATGCAACGAACGAAGTTGAGCTAATTAATTGGTGTAAAAGTTTCATCTTTGGTATTAATGGATGTTCAATTTTTAAAAAATGGTTTCATCCTTTTTATTTGTTCTGCTATTCTCTTTTCTGCTTTGCCATTAATATTGAGTAGAAAAGAGTATCCAGAGACCTTTGTTAATGATTTTTTCTGGGTCAGGGAAATTGACAAAGTAAACAACAACAAAAGTTATTTTAGTATTGTTTCATATTCTGAGAAAACCTAAAATATGTTGGAAACAATAAATTAACTGAAGACCTGCACTTGTATTAACATTGTCATTGTGTCCTACATACGCACAAGCATAATCTTTCTTACATATGTACTTGTGATTAAACCAAAACAATGTGTTCAGTTGAATCCATTGAACCCACTCTTGATCTGCCTCTGTGATGTAGTATCTTCTTTCCTCAACAGGTTTTCTGTTACTATGAAGACCCTATAGTTTCATTGGCAATCTTGTATCAATTGTAGTGATTTAATTCATTTGTTGAACTTTTTTTCAGATCAGCAAAAGGTATAATTTTGTTAATTAAACAACAATAAGACTTTGTTGAATAAGTACAACAAAAAGCAAATAATACATTCCCTTAATTCTGAATAAATATATTCATTTGTCAAACTTGAAAGAACCCTTCACAGAGCACTTTTAGTTTAAAGGAAAATGCCTCTTAAGAACATCAGGTAGAATTAAGATATTGTTTTGAGTGCATTTTCTTTTAGAAGTAGTTAGTAAAGGGTTGCTCTTATATCATTATACGAGAAGTTGATTCTGCAGCACTTATGCAACTATTCATGAGTTCTTCTCATCTCTTTTTTTCCTTCCATTGGAAAATGGTGATAGATTATATAATATGCTTAGAACTTGTCATATGAAAGAATTTTTTGGACCACCATCTCGAGTGGCCAAGTGATACCCTGTGTAACTCATTTAATGGAAGAACCAAAGTACAAACCCCATTTCCCAAATTTGTCAGAGATGTTTTTTCCATTTTTACTAGTACCAGAGGAAGAAAGGCTGATGTGACTATAATCTTTTTTTTTTGTAGGGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCT</genome_strand>
        <mrna_strand>TCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266283" ref_strand="+" ref_description="SGN-E266283 [cLEI-3-N5]">
      <seq>ctgctttaccggcggtatttctcggccaaaaatgccccgaaatccttgactttgttacctttctgccatcatcgccattacaatcatttgcgttccaaattatctatcacgcccaaactccgattctcctgtaagggtctacaatctaattggaatcattcagtcgtaactagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggtatcagaggaagcaatatctaactttattagccaagtttcaagccttgtcaagctagttgattctagggatgttgtggagctgcagttaaaacaatttgattgtgaaattctaatccgtaagaaggaggcactaccacaaccacctgctcctgttcctgcacaagctccatttatacaatcatatcatgtaccatctatacaatctaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="29770" stop="33080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30070" g_stop="30203" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="189" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="335" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32621" g_stop="32780" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="495" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E266283" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30070" e_stop="30203"/>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTCACCGGCGGTATTTC-CGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAGGTAATACTATTCCTCTGCACTTTTGCTTTCTCAGTTTACTTTCCTTCAATTAATTTTGTGTTTACTGCCCTCTCTGTATGAAATATGCATATTATTTAGATTCAATGAGTTCGGAATGAATACGATTTGTTAAATGTGTACATTTTGGAAACAAATGCACTTATATATCTACCTAGCTCACTCTAGGTGCTACCGTGGTAGCATAAATCAAGCCATGTTTTTTGAGCTAAGTGTAATCCCACGAGTTTGGAGATGGTAGGATAGGAAAGGATGTATGCAGACTTTTAACTTCTACAGTTGCAGGGTGGAGAGGTTGTTTCTGATAGTCCCTCGGCTCAAAAGAAGTGTAAACAAATCATGATAGAATGGAAAATATTGACAAAAAAATTAGCATGATAAACAGATCAAATGAAGCAACATGTAATTGTGAGAATTGAAGAACGCATTACCAAACAGACTAAGAAAAGAAAAAATAAATAAATAAATTTGTGATTGATGTTATAAACTTATTTGTATATATTTTATTTATGCAAGTAGATAATGGTATGTCATGCATGATCTATTTTTATTTTGTTATATGGAGTAGGATTCACAATTTTTATCTGGGATGCAGATCACTACTGCAAATACTAGTGTATATGTACTGGAACAACATCTATAACGTCTTAATCATGAATTAGTTTGGACTCCGTTATATTTAGATATGATAAAACTACCGTTCAGTCTAAAACTAGTTAGGGTCGACATATTTTTAGAAATGATTTTCAGCTATACCATGTAGTTTGAATTGAGGTTACTGCGAAAGGATGTATTCGCCAATGGTTTTATTTCTATTCTTAGTATAATTTTATATCTTTTGGGTATTCTTTTTCTTGTGAAACTTGATATGAGAACACACGTAAAAGAAGTGAATATCTCCCAGATGAAATTGAAGCTGGAAATGGAAAAGACACCTTATATGTGATCTTAAATGCAACGAACGAAGTTGAGCTAATTAATTGGTGTAAAAGTTTCATCTTTGGTATTAATGGATGTTCAATTTTTAAAAAATGGTTTCATCCTTTTTATTTGTTCTGCTATTCTCTTTTCTGCTTTGCCATTAATATTGAGTAGAAAAGAGTATCCAGAGACCTTTGTTAATGATTTTTTCTGGGTCAGGGAAATTGACAAAGTAAACAACAACAAAAGTTATTTTAGTATTGTTTCATATTCTGAGAAAACCTAAAATATGTTGGAAACAATAAATTAACTGAAGACCTGCACTTGTATTAACATTGTCATTGTGTCCTACATACGCACAAGCATAATCTTTCTTACATATGTACTTGTGATTAAACCAAAACAATGTGTTCAGTTGAATCCATTGAACCCACTCTTGATCTGCCTCTGTGATGTAGTATCTTCTTTCCTCAACAGGTTTTCTGTTACTATGAAGACCCTATAGTTTCATTGGCAATCTTGTATCAATTGTAGTGATTTAATTCATTTGTTGAACTTTTTTTCAGATCAGCAAAAGGTATAATTTTGTTAATTAAACAACAATAAGACTTTGTTGAATAAGTACAACAAAAAGCAAATAATACATTCCCTTAATTCTGAATAAATATATTCATTTGTCAAACTTGAAAGAACCCTTCACAGAGCACTTTTAGTTTAAAGGAAAATGCCTCTTAAGAACATCAGGTAGAATTAAGATATTGTTTTGAGTGCATTTTCTTTTAGAAGTAGTTAGTAAAGGGTTGCTCTTATATCATTATACGAGAAGTTGATTCTGCAGCACTTATGCAACTATTCATGAGTTCTTCTCATCTCTTTTTTTCCTTCCATTGGAAAATGGTGATAGATTATATAATATGCTTAGAACTTGTCATATGAAAGAATTTTTTGGACCACCATCTCGAGTGGCCAAGTGATACCCTGTGTAACTCATTTAATGGAAGAACCAAAGTACAAACCCCATTTCCCAAATTTGTCAGAGATGTTTTTTCCATTTTTACTAGTACCAGAGGAAGAAAGGCTGATGTGACTATAATCTTTTTTTTTTGTAGGGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCA</genome_strand>
        <mrna_strand>CTGCTTTACCGGCGGTATTTCTCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248083" ref_strand="+" ref_description="SGN-E248083 [cLEF-47-N7]">
      <seq>ggtatttccggccaaaaatgccccgaaatccttgactttgttacctttctgccatcatcgccattacaatcatttgcgttccaaattatctatcacgcccaaactccgattctcctgtaagggtctacaatctaattggaatcattcagtcgtaactagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggtatcagaggaagcaatatctaactttattagccaagtttcaagccttgtcaagctagttgattctagggatgttgtggagctgcagttaaaacaatttgattgtgaaattctaatccgtaagaaggaggcactaccacaaccacctgctcctgttcctgcacaagctccatttatacaatcatatcatgtaccatctatacaatctaatgcatctcctccacctgcacctgcaccttcacctgctccaattcaaacccctgcaccgtctccagctgcagcaaagtcagctgattcatctcttcctccgctcaaatccccaatggcagggacattctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="29783" stop="33207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30083" g_stop="30203" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="175" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="321" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32621" g_stop="32907" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="608" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E248083" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30083" e_stop="30203"/>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAGGTAATACTATTCCTCTGCACTTTTGCTTTCTCAGTTTACTTTCCTTCAATTAATTTTGTGTTTACTGCCCTCTCTGTATGAAATATGCATATTATTTAGATTCAATGAGTTCGGAATGAATACGATTTGTTAAATGTGTACATTTTGGAAACAAATGCACTTATATATCTACCTAGCTCACTCTAGGTGCTACCGTGGTAGCATAAATCAAGCCATGTTTTTTGAGCTAAGTGTAATCCCACGAGTTTGGAGATGGTAGGATAGGAAAGGATGTATGCAGACTTTTAACTTCTACAGTTGCAGGGTGGAGAGGTTGTTTCTGATAGTCCCTCGGCTCAAAAGAAGTGTAAACAAATCATGATAGAATGGAAAATATTGACAAAAAAATTAGCATGATAAACAGATCAAATGAAGCAACATGTAATTGTGAGAATTGAAGAACGCATTACCAAACAGACTAAGAAAAGAAAAAATAAATAAATAAATTTGTGATTGATGTTATAAACTTATTTGTATATATTTTATTTATGCAAGTAGATAATGGTATGTCATGCATGATCTATTTTTATTTTGTTATATGGAGTAGGATTCACAATTTTTATCTGGGATGCAGATCACTACTGCAAATACTAGTGTATATGTACTGGAACAACATCTATAACGTCTTAATCATGAATTAGTTTGGACTCCGTTATATTTAGATATGATAAAACTACCGTTCAGTCTAAAACTAGTTAGGGTCGACATATTTTTAGAAATGATTTTCAGCTATACCATGTAGTTTGAATTGAGGTTACTGCGAAAGGATGTATTCGCCAATGGTTTTATTTCTATTCTTAGTATAATTTTATATCTTTTGGGTATTCTTTTTCTTGTGAAACTTGATATGAGAACACACGTAAAAGAAGTGAATATCTCCCAGATGAAATTGAAGCTGGAAATGGAAAAGACACCTTATATGTGATCTTAAATGCAACGAACGAAGTTGAGCTAATTAATTGGTGTAAAAGTTTCATCTTTGGTATTAATGGATGTTCAATTTTTAAAAAATGGTTTCATCCTTTTTATTTGTTCTGCTATTCTCTTTTCTGCTTTGCCATTAATATTGAGTAGAAAAGAGTATCCAGAGACCTTTGTTAATGATTTTTTCTGGGTCAGGGAAATTGACAAAGTAAACAACAACAAAAGTTATTTTAGTATTGTTTCATATTCTGAGAAAACCTAAAATATGTTGGAAACAATAAATTAACTGAAGACCTGCACTTGTATTAACATTGTCATTGTGTCCTACATACGCACAAGCATAATCTTTCTTACATATGTACTTGTGATTAAACCAAAACAATGTGTTCAGTTGAATCCATTGAACCCACTCTTGATCTGCCTCTGTGATGTAGTATCTTCTTTCCTCAACAGGTTTTCTGTTACTATGAAGACCCTATAGTTTCATTGGCAATCTTGTATCAATTGTAGTGATTTAATTCATTTGTTGAACTTTTTTTCAGATCAGCAAAAGGTATAATTTTGTTAATTAAACAACAATAAGACTTTGTTGAATAAGTACAACAAAAAGCAAATAATACATTCCCTTAATTCTGAATAAATATATTCATTTGTCAAACTTGAAAGAACCCTTCACAGAGCACTTTTAGTTTAAAGGAAAATGCCTCTTAAGAACATCAGGTAGAATTAAGATATTGTTTTGAGTGCATTTTCTTTTAGAAGTAGTTAGTAAAGGGTTGCTCTTATATCATTATACGAGAAGTTGATTCTGCAGCACTTATGCAACTATTCATGAGTTCTTCTCATCTCTTTTTTTCCTTCCATTGGAAAATGGTGATAGATTATATAATATGCTTAGAACTTGTCATATGAAAGAATTTTTTGGACCACCATCTCGAGTGGCCAAGTGATACCCTGTGTAACTCATTTAATGGAAGAACCAAAGTACAAACCCCATTTCCCAAATTTGTCAGAGATGTTTTTTCCATTTTTACTAGTACCAGAGGAAGAAAGGCTGATGTGACTATAATCTTTTTTTTTTGTAGGGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATA</genome_strand>
        <mrna_strand>GGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538203" ref_strand="+" ref_description="SGN-E538203 [TUS-57-D17]">
      <seq>ctcctgtaagggtctacaatctaattggaatcattcagtcgtaactagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggtatcagaggaagcaatatctaactttattagccaagtttcaagccttgtcaagctagttgattctagggatgttgtggagctgcagttaaaacaatttgattgtgaaattctaatccgtaagaaggaggcactaccacaaccacctgctcctgttcctgcacaagctccatttatacaatcatatcatgtaccatctatacaatctaatgcatctcctccacctgcacctgcaccttcacctgctccaattcaaacccctgcaccgtctccagctgcagcaaagtcagctgattcatctcttcctccgctcaaatccccaatggcagggacattctatagaagtccagcacccggtgaaccagcatttgtgaaggtcggagacaaagtgcagaagggtcaagttctttgcattattgaagcgatgaagttgatgaacgaaatagaggctgatcgatcaggaaccatcgttgaggttgttgctgaagatggaaaacctgtcagtgttgatactcctctgtttgtgatcaagccatagaaccgttcgagtaagacccgggaaacaatatgcagaggaacttggcaagtgtttgtttaccttgggcttatgatattttgcagtatttcagtttcagtgagtatgtttgcaatgactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="31947" stop="35962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="64" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="210" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32621" g_stop="32942" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="532" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32943" i_stop="33068" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33069" g_stop="33140" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="604" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33141" i_stop="35369" i_length="2229">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35370" g_stop="35435" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="670" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35519" g_stop="35662" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="814" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E538203" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32942"/>
          <exon e_start="33069" e_stop="33140"/>
          <exon e_start="35370" e_stop="35435"/>
          <exon e_start="35519" e_stop="35662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAGGTACTGCATGTCCATCTTTTATGTAATAAATTCTAATATGGAAACCTCAAAGATTAAAAAAGTTGAAGTTTATGGTTTAACGCGCTCTCTCAATGCATTTGGTTTCCATGATATGCATTACAACAGGTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAGGTAACCTTTTCCTTTGGTTATTGCCAATGCCTGCTATATTGTTTTCTTGTACTTATACGATACCTCTGTTTTTTAACTATTTTTAAATTTATATATCTGCTTTTAAATTGGTGCCAAAAGAATTGTCTTCTTACCTGCACAACTTTTAGAAAGGCATTGAAATAAATTGAAATCATGATTAGCAATTGTTTGCTCAAATATCAAAGAAATTATTTATTGCCTCTCTGCTGTTTTTTTCCCAGTGTGGAATAGAAGTAGCATCAATTCATCACAACTCTCAAAAAGATGCAGGAAAGAAAGATTGCATTTGACTTCTAATGTATAAACCTGCTTTCTACTTATACAACATGAGTTCTCCAAAAGGATGACCTAGTGGTTGAGGCATGAGAGATCCCAGGTTCTCATTCTAGCTACCACATTTGTTTGACCCATGCTCTAGCCTTGAGAAGAGGATTACCTTGGGAACTTATACCTGTGGGCTGTCCACGCTGTGTGATGTATTAGTGGGGTGCACAAGCTAGCTTGAGACAAAATGCTTTGGGTTGTCATTTTACCATCTAACGACTCCTTTCCAAAACTGATGTCCGTTGGTTTTGCTAGAGCTTGCAAATTTGTAAAAGAAAATGAACAGGAGAAATACTAAGTATCTCTAAATACAACGTTTCTACTCTACTAGTCCAGACCACATCCAATATATATATATTGGAAAAACTATATATTTCTAGTCTACCAAACAAATTAAGAATTTTTTTTCTTGGACTATTTAATTATATAATTAGAAGTAGTAAAGGAAGATACCCCAAGGATTCTGGGGGTTTCAATGGTGATGTACATGCTTAGATTTTATATACTTGTAGTGGCACTTCGGGGCTTGTGGATTGTTTGGGTATGCCGCATGCTTAAACTTTGATGATACTTAGTGGATCTAGTTTGGACATGTAAGGTTTGCTATGAAATGTACATAATGTTTGGGAATACCTTTTTCTACTTGAGATTCATCTGGTAATTGGTATAGTAACATTTTTACTGTCATTGTAGACTCAGCAACATCCTTTGGTGCTATTCTAAATTAGAACAACAACATACTCAGTGTGATCCCACAAGTGGGAAGAGGGGGAGGGTACTCTGTTTTTATTCATTATTTATTTTGTTACTGCATTATTCTCTTCATTTGTATGTAATAAATATATGCTTTTGTGTTAGCAATTCTATTTAGAATTGGCAATTGGCATAGAGTTGACAATGAATCAGTGAAGTCTTCTTTTCATGTAGATGAGTATAAGTATATGTCTTAGTGGTTAGGAAGTGATCAAAGAAGTTGAGGGGGCTTGTTGTTCCTTTGAATGGTTGAAGCCCGCGGATTTAGAAATAAGGGGGAAATCTAAATCTTGTTTGAGAATTGTAACTTCTTTATTTGTATTTTTTGAAAGAAAAAATAAAATTTGAAGAGTATATGTGGAGCAGGCATTCAGTGTTTATTATTTTATAACTATACTGGGAATCCATAAGTTTTATTTATTTTATATCCCCCTCATTCTTCGTTCTCTAACATGTTGGAAGTTTTATCTCTGCTGGAGTTGTCATGTAGATGAACTCATGCCAGTTTCAATAAAATGCTTGTAAGTAAGTGGCAGAAGTTTCATGTTTCCTTGCCCTCATGTTGCAGAGAAATCCTTTCTTGTCGACCTGATGAAATTTTGTGGAAACTAGTGGTAGTTATGACTGATGTTGCTATTTCACCTATGTCGTCCCACTATGAACTAATAGTTACATCAAAGCTTGTTCCACTGTATGTAATACTTGGAAGACATTAGAGAGTTGATGAGAGAATGATGATAGGAAACTTTGGCTAGTTCAGTTAAAGCATTCATTTGTTGTTTCACTCAAAGACAACATAATGTCCATTAAATCCCAAAAGCTAGCTTAAGAGGTGAACGTTGCACAACATCATATAAGGAGACAATAATCACATTTGTTCAATAGACATAGGAGGATCTAACAGCCTCACCCCACACGCTCTAGCTTGTCTAACTGGAGCGTGAATAACGTAAAGCTGGGTTCTGATATCCATGAAGTAGACCTTGCCTGTAGCTTAACCTCAAAAGTTAGGTCATGCAATGAGGATAAAGACCATACGAGGAGACAACCTATTTCTACCTGCCAATATGGGGCAATTTGAAAGTTATCCTTCCCAAAATTTGACTGCTATGCTCTGTCTGTTCCCTTCAGGCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACTGTGAGTTTCTTGACTAACCTAATCCAACTATTCAGTTTTGTGAACTCCATTTCCTTCCTAATATCGTATTTATCTCTCTGCAGCCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGT</genome_strand>
        <mrna_strand>GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAG..............................................................................................................................GTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACT...................................................................................CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538198" ref_strand="+" ref_description="SGN-E538198 [TUS-57-D14]">
      <seq>ctcctgtaagggtctacaatctaattggaatcattcagtcgtaactagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggtatcagaggaagcaatatctaactttattagccaagtttcaagccttgtcaagctagttgattctagggatgttgtggagctgcagttaaaacaatttgattgtgaaattctaatccgtaagaaggaggcactaccacaaccacctgctcctgttcctgcacaagctccatttatacaatcatatcatgtaccatctatacaatctaatgcatctcctccacctgcacctgcaccttcacctgctccaattcaaacccctgcaccgtctccagctgcagcaaagtcagctgattcatctcttcctccgctcaaatccccaatggcagggacattctatagaagtccagcacccggtgaaccagcatttgtgaaggtcggagacaaagtgcagaagggtcaagttctttgcattattgaagcgatgaagctgatgaacgaaatagatgctgatcgatcaggaaccatcgttgaggttgttgctgaagatggaaaacctgtcagtgttgatactcctctgaatgtgatcaagccatagaaccgttcgagtaagacccgggaaacaatatgcagaggaacttggcaagcgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="31947" stop="35897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="64" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="210" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32621" g_stop="32942" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="532" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32943" i_stop="33068" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33069" g_stop="33140" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="604" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33141" i_stop="35369" i_length="2229">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35370" g_stop="35435" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="670" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35519" g_stop="35597" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="749" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E538198" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32942"/>
          <exon e_start="33069" e_stop="33140"/>
          <exon e_start="35370" e_stop="35435"/>
          <exon e_start="35519" e_stop="35597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAGGTACTGCATGTCCATCTTTTATGTAATAAATTCTAATATGGAAACCTCAAAGATTAAAAAAGTTGAAGTTTATGGTTTAACGCGCTCTCTCAATGCATTTGGTTTCCATGATATGCATTACAACAGGTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAGGTAACCTTTTCCTTTGGTTATTGCCAATGCCTGCTATATTGTTTTCTTGTACTTATACGATACCTCTGTTTTTTAACTATTTTTAAATTTATATATCTGCTTTTAAATTGGTGCCAAAAGAATTGTCTTCTTACCTGCACAACTTTTAGAAAGGCATTGAAATAAATTGAAATCATGATTAGCAATTGTTTGCTCAAATATCAAAGAAATTATTTATTGCCTCTCTGCTGTTTTTTTCCCAGTGTGGAATAGAAGTAGCATCAATTCATCACAACTCTCAAAAAGATGCAGGAAAGAAAGATTGCATTTGACTTCTAATGTATAAACCTGCTTTCTACTTATACAACATGAGTTCTCCAAAAGGATGACCTAGTGGTTGAGGCATGAGAGATCCCAGGTTCTCATTCTAGCTACCACATTTGTTTGACCCATGCTCTAGCCTTGAGAAGAGGATTACCTTGGGAACTTATACCTGTGGGCTGTCCACGCTGTGTGATGTATTAGTGGGGTGCACAAGCTAGCTTGAGACAAAATGCTTTGGGTTGTCATTTTACCATCTAACGACTCCTTTCCAAAACTGATGTCCGTTGGTTTTGCTAGAGCTTGCAAATTTGTAAAAGAAAATGAACAGGAGAAATACTAAGTATCTCTAAATACAACGTTTCTACTCTACTAGTCCAGACCACATCCAATATATATATATTGGAAAAACTATATATTTCTAGTCTACCAAACAAATTAAGAATTTTTTTTCTTGGACTATTTAATTATATAATTAGAAGTAGTAAAGGAAGATACCCCAAGGATTCTGGGGGTTTCAATGGTGATGTACATGCTTAGATTTTATATACTTGTAGTGGCACTTCGGGGCTTGTGGATTGTTTGGGTATGCCGCATGCTTAAACTTTGATGATACTTAGTGGATCTAGTTTGGACATGTAAGGTTTGCTATGAAATGTACATAATGTTTGGGAATACCTTTTTCTACTTGAGATTCATCTGGTAATTGGTATAGTAACATTTTTACTGTCATTGTAGACTCAGCAACATCCTTTGGTGCTATTCTAAATTAGAACAACAACATACTCAGTGTGATCCCACAAGTGGGAAGAGGGGGAGGGTACTCTGTTTTTATTCATTATTTATTTTGTTACTGCATTATTCTCTTCATTTGTATGTAATAAATATATGCTTTTGTGTTAGCAATTCTATTTAGAATTGGCAATTGGCATAGAGTTGACAATGAATCAGTGAAGTCTTCTTTTCATGTAGATGAGTATAAGTATATGTCTTAGTGGTTAGGAAGTGATCAAAGAAGTTGAGGGGGCTTGTTGTTCCTTTGAATGGTTGAAGCCCGCGGATTTAGAAATAAGGGGGAAATCTAAATCTTGTTTGAGAATTGTAACTTCTTTATTTGTATTTTTTGAAAGAAAAAATAAAATTTGAAGAGTATATGTGGAGCAGGCATTCAGTGTTTATTATTTTATAACTATACTGGGAATCCATAAGTTTTATTTATTTTATATCCCCCTCATTCTTCGTTCTCTAACATGTTGGAAGTTTTATCTCTGCTGGAGTTGTCATGTAGATGAACTCATGCCAGTTTCAATAAAATGCTTGTAAGTAAGTGGCAGAAGTTTCATGTTTCCTTGCCCTCATGTTGCAGAGAAATCCTTTCTTGTCGACCTGATGAAATTTTGTGGAAACTAGTGGTAGTTATGACTGATGTTGCTATTTCACCTATGTCGTCCCACTATGAACTAATAGTTACATCAAAGCTTGTTCCACTGTATGTAATACTTGGAAGACATTAGAGAGTTGATGAGAGAATGATGATAGGAAACTTTGGCTAGTTCAGTTAAAGCATTCATTTGTTGTTTCACTCAAAGACAACATAATGTCCATTAAATCCCAAAAGCTAGCTTAAGAGGTGAACGTTGCACAACATCATATAAGGAGACAATAATCACATTTGTTCAATAGACATAGGAGGATCTAACAGCCTCACCCCACACGCTCTAGCTTGTCTAACTGGAGCGTGAATAACGTAAAGCTGGGTTCTGATATCCATGAAGTAGACCTTGCCTGTAGCTTAACCTCAAAAGTTAGGTCATGCAATGAGGATAAAGACCATACGAGGAGACAACCTATTTCTACCTGCCAATATGGGGCAATTTGAAAGTTATCCTTCCCAAAATTTGACTGCTATGCTCTGTCTGTTCCCTTCAGGCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACTGTGAGTTTCTTGACTAACCTAATCCAACTATTCAGTTTTGTGAACTCCATTTCCTTCCTAATATCGTATTTATCTCTCTGCAGCCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTG</genome_strand>
        <mrna_strand>GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAG..............................................................................................................................GTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGCTGATGAACGAAATAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACT...................................................................................CCTCTGAATGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGCGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267993" ref_strand="+" ref_description="SGN-E267993 [cLEI-15-O23]">
      <seq>tcctgtaagggtctacaatctaattggaatcattcaggcgtatctagagcccaatcgaatgaggttgctcttggtggatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggaatccaaggaagcaatatctaactttattatccaagtttcaagccttgtcaagctagttgattctagggatgtagtggagctgcagttaccacaactggattgtgaaattctgatccgaaagaccgaggcactaccacaagcacctgctcctgttcctgcacaagctccatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="31947" stop="33043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32252" g_stop="32305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="63" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.105" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32399" g_stop="32544" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="209" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32621" g_stop="32743" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="332" r_length="123" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E267993" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32252" e_stop="32305"/>
          <exon e_start="32399" e_stop="32544"/>
          <exon e_start="32621" e_stop="32743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTAAGATTCTTTCAAATGGTTTTCATTGGAGGAATTCTATCAAATATTGTAACCTTTGTGAAAACCTTTTTGGGACCATCTGTTGCCTTCAAGGTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTAT</genome_strand>
        <mrna_strand>GGTCTACAATCTAATTGGAATCATTCAGGCGTATCTAGAGCCCAATCGAATGAG.............................................................................................GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGAATCCAAGGAAGCAATATCTAACTTTATTATCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTAGTGGAGCTGCAGTTACCACAACTGGATTGTGAAATTCTGATCCGAAAGACCGAGGCACTACCACAAGCACCTGCTCCTGTTCCTGCACAAGCTCCATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335782" ref_strand="+" ref_description="SGN-E335782 [cTOE-6-E7]">
      <seq>gatcttcaaataatgcagctactcctatcactcagtcagaagaggtgaaatcaccaagtgagacttcatctgcaacttcggtatcagaggaagcaatatctaactttattagccaagtttcaagccttgtcaagctagttgattctagggatgttgtggagctgcagttaaaacaatttgattgtgaaattctaatccgtaagaaggaggcactaccacaaccacctgctcctgttcctgcacaagctccatttatacaatcatatcatgtaccatctatacaatctaatgcatctcctccacctgcacctgcaccttcacctgctccaattcaaacccctgcaccgtctccagctgcagcaaagtcagctgattcatctcttcctccgctcaaatccccaatggcagggacattctatagaagtccagcacccggtgaaccagcatttgtgaaggtcggagacaaagtgcagaagggtcaagttctttgcattattgaagcgatgaagttgatgaacgaaatagaggctgatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="32112" stop="33446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32412" g_stop="32544" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32621" g_stop="32942" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="455" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32943" i_stop="33068" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33069" g_stop="33140" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="527" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E335782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32412" e_stop="32544"/>
          <exon e_start="32621" e_stop="32942"/>
          <exon e_start="33069" e_stop="33140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGTATGCATTCCCATTTTTTTTCACATCTCTGAAGAGACTTTTCATGAATAATCATGACAGACTGTCCTTTGTGCAGGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAGGTACTGCATGTCCATCTTTTATGTAATAAATTCTAATATGGAAACCTCAAAGATTAAAAAAGTTGAAGTTTATGGTTTAACGCGCTCTCTCAATGCATTTGGTTTCCATGATATGCATTACAACAGGTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAG</genome_strand>
        <mrna_strand>GATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA............................................................................GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAG..............................................................................................................................GTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695743" ref_strand="+" ref_description="SGN-E695743 [LH_Ea07F05](-)">
      <seq>cacatcctccacttgcacctgcacctgctccaattcaaacccctgcaccttctccagctgcagcaaagtcagctgattcatctcttcctccgctcaaatccccaatggcagggacattttatagaagtccagcacccggtgaaccagcatttgtgaaggtcggagacaaagtgcagaagggtcaagttctttgcattattgaagcgatgaagttgatgaacgaaatagaggctgatcgatcaggaaccatcgttgaggttgttgctgaagatggaaaacctgtcagtgttgatactcctctgtttgtcatcaagccatagaaccgttcgagtaagacccgggaaacaatatgcagaggaacttggcagtgtttgtttaccttgggcttatgatattttgcagtatttcagtttcagtgagtatgtttgcattgactggtagtgtgatggaaattggaatagacgattctggctaaaactcattaggagagtttactgtttaatttgaggtattctttggcattttattgtggattttagcttactcatttttcctttttcagtttgacgtatttatgtgaggtttgtacctcgataacaatttcatcgcattatgattaggattttatgcagttttgattatttagcccctggccaatacgataaaggtaattgctatttcatgtgaaatagtttcaatttactagacgcaacataacttggtactaacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="32488" stop="85316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32785" g_stop="32942" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32943" i_stop="33068" i_length="126">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33069" g_stop="33140" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="230" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33141" i_stop="35369" i_length="2229">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35370" g_stop="35435" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="296" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35519" g_stop="35951" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="726" r_length="430" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35952" i_stop="36198" i_length="247">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.705" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36199" g_stop="36221" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="749" r_length="23" r_score="0.696"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E695743" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32785" e_stop="32942"/>
          <exon e_start="33069" e_stop="33140"/>
          <exon e_start="35370" e_stop="35435"/>
          <exon e_start="35519" e_stop="35951"/>
          <exon e_start="36199" e_stop="36221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAGGTACTGCATGTCCATCTTTTATGTAATAAATTCTAATATGGAAACCTCAAAGATTAAAAAAGTTGAAGTTTATGGTTTAACGCGCTCTCTCAATGCATTTGGTTTCCATGATATGCATTACAACAGGTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAGGTAACCTTTTCCTTTGGTTATTGCCAATGCCTGCTATATTGTTTTCTTGTACTTATACGATACCTCTGTTTTTTAACTATTTTTAAATTTATATATCTGCTTTTAAATTGGTGCCAAAAGAATTGTCTTCTTACCTGCACAACTTTTAGAAAGGCATTGAAATAAATTGAAATCATGATTAGCAATTGTTTGCTCAAATATCAAAGAAATTATTTATTGCCTCTCTGCTGTTTTTTTCCCAGTGTGGAATAGAAGTAGCATCAATTCATCACAACTCTCAAAAAGATGCAGGAAAGAAAGATTGCATTTGACTTCTAATGTATAAACCTGCTTTCTACTTATACAACATGAGTTCTCCAAAAGGATGACCTAGTGGTTGAGGCATGAGAGATCCCAGGTTCTCATTCTAGCTACCACATTTGTTTGACCCATGCTCTAGCCTTGAGAAGAGGATTACCTTGGGAACTTATACCTGTGGGCTGTCCACGCTGTGTGATGTATTAGTGGGGTGCACAAGCTAGCTTGAGACAAAATGCTTTGGGTTGTCATTTTACCATCTAACGACTCCTTTCCAAAACTGATGTCCGTTGGTTTTGCTAGAGCTTGCAAATTTGTAAAAGAAAATGAACAGGAGAAATACTAAGTATCTCTAAATACAACGTTTCTACTCTACTAGTCCAGACCACATCCAATATATATATATTGGAAAAACTATATATTTCTAGTCTACCAAACAAATTAAGAATTTTTTTTCTTGGACTATTTAATTATATAATTAGAAGTAGTAAAGGAAGATACCCCAAGGATTCTGGGGGTTTCAATGGTGATGTACATGCTTAGATTTTATATACTTGTAGTGGCACTTCGGGGCTTGTGGATTGTTTGGGTATGCCGCATGCTTAAACTTTGATGATACTTAGTGGATCTAGTTTGGACATGTAAGGTTTGCTATGAAATGTACATAATGTTTGGGAATACCTTTTTCTACTTGAGATTCATCTGGTAATTGGTATAGTAACATTTTTACTGTCATTGTAGACTCAGCAACATCCTTTGGTGCTATTCTAAATTAGAACAACAACATACTCAGTGTGATCCCACAAGTGGGAAGAGGGGGAGGGTACTCTGTTTTTATTCATTATTTATTTTGTTACTGCATTATTCTCTTCATTTGTATGTAATAAATATATGCTTTTGTGTTAGCAATTCTATTTAGAATTGGCAATTGGCATAGAGTTGACAATGAATCAGTGAAGTCTTCTTTTCATGTAGATGAGTATAAGTATATGTCTTAGTGGTTAGGAAGTGATCAAAGAAGTTGAGGGGGCTTGTTGTTCCTTTGAATGGTTGAAGCCCGCGGATTTAGAAATAAGGGGGAAATCTAAATCTTGTTTGAGAATTGTAACTTCTTTATTTGTATTTTTTGAAAGAAAAAATAAAATTTGAAGAGTATATGTGGAGCAGGCATTCAGTGTTTATTATTTTATAACTATACTGGGAATCCATAAGTTTTATTTATTTTATATCCCCCTCATTCTTCGTTCTCTAACATGTTGGAAGTTTTATCTCTGCTGGAGTTGTCATGTAGATGAACTCATGCCAGTTTCAATAAAATGCTTGTAAGTAAGTGGCAGAAGTTTCATGTTTCCTTGCCCTCATGTTGCAGAGAAATCCTTTCTTGTCGACCTGATGAAATTTTGTGGAAACTAGTGGTAGTTATGACTGATGTTGCTATTTCACCTATGTCGTCCCACTATGAACTAATAGTTACATCAAAGCTTGTTCCACTGTATGTAATACTTGGAAGACATTAGAGAGTTGATGAGAGAATGATGATAGGAAACTTTGGCTAGTTCAGTTAAAGCATTCATTTGTTGTTTCACTCAAAGACAACATAATGTCCATTAAATCCCAAAAGCTAGCTTAAGAGGTGAACGTTGCACAACATCATATAAGGAGACAATAATCACATTTGTTCAATAGACATAGGAGGATCTAACAGCCTCACCCCACACGCTCTAGCTTGTCTAACTGGAGCGTGAATAACGTAAAGCTGGGTTCTGATATCCATGAAGTAGACCTTGCCTGTAGCTTAACCTCAAAAGTTAGGTCATGCAATGAGGATAAAGACCATACGAGGAGACAACCTATTTCTACCTGCCAATATGGGGCAATTTGAAAGTTATCCTTCCCAAAATTTGACTGCTATGCTCTGTCTGTTCCCTTCAGGCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACTGTGAGTTTCTTGACTAACCTAATCCAACTATTCAGTTTTGTGAACTCCATTTCCTTCCTAATATCGTATTTATCTCTCTGCAGCCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTTACTTGACTCAACATAACTTGGAACTACTAGAGTTCTCATTTTCCACACATATGTTATGTTAGAATCGATGTATATCGATTATAAGATGTGAAATAAGAATATGAGAATTTAGCTTTCTTGATTACTCTCCATAGTAAAATAAAAACATTGGCAAGACAAGTACATCACATCCATTTTCTCTAATGAGACTTCATTATCCACGGCTATACACTGAATTTAGTTAGAACTAATTTACGACATTCATAGACATTATCTGCTTCATATTTAAACAGAAGAAGTCATAGAAAAAAAAAAG</genome_strand>
        <mrna_strand>CACATCCTCCACTTGCACCTGCACCTGCTCCAATTCAAACCCCTGCACCTTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTTTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAG..............................................................................................................................GTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACT...................................................................................CCTCTGTTTGTCATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGC-AGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCATTGACTGGTAGTGTGATGGAAATTGGAATAGACGATTCTGGCTAAAACTCATTAGGAGAGTTTACTGTTTAATTTGAGGTATTCTTTGGCATTTTATTGT-GGATTTTAGCTTACTCA-TTTTTCCTTTTTCAGTTTGACGTATTTATGTGAGGTTTGTACCTCGATAACAATTTCATCGCATTATGATTAGGATTTTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATAAAGGTAATTGCTATTTCATGTGAAATAGTTTCAATTTACTAGACGCAACATAACTTGGTACT.......................................................................................................................................................................................................................................................AACAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538195" ref_strand="+" ref_description="SGN-E538195 [TUS-57-D14](-)">
      <seq>aattcaaacccctgcaccgtctccagctgcagcaaagtcagctgattcatctcttcctccgctcaaatccccaatggcagggacattctatagaagtccagcacccggtgaaccagcatttgtgaaggtcggagacaaagtgcagaagggtcaagttctttgcattattgaagcgatgaagttgatgaacgaaatagaggctgatcgatcaggaaccatcgttgaggttgttgctgaagatggaaaacctgtcagtgttgatactcctctgtttgtgatcaagccatagaaccgtttgagtaagacccgggaaacaatatgcagaggaacttggcaagtgtttgtttaccttgggcttatgatattttgcagtatttcagtttcagtgagtatgtttgcaatgactggtagcgtgatggaaattggaatagacgattctggttaaaactcattaggagagtttagtgtttaatctgaggtattctttggcattttattgtgggattctagcttactcattttttcctttttcagtttgacatatttatgtgaggtttgtacctcgataacaatctcatcgcattatgataaggattgtatgcagttttgattatttagcccctggccaatacgatacttataattgctattttatgtgaaatagtttcaatttaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="32516" stop="36227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32816" g_stop="32942" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32943" i_stop="33068" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33069" g_stop="33140" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="199" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33141" i_stop="35369" i_length="2229">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35370" g_stop="35435" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="265" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35519" g_stop="35926" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="673" r_length="408" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35927" i_stop="36210" i_length="284">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36211" g_stop="36227" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="689" r_length="16" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E538195" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32816" e_stop="32942"/>
          <exon e_start="33069" e_stop="33140"/>
          <exon e_start="35370" e_stop="35435"/>
          <exon e_start="35519" e_stop="35926"/>
          <exon e_start="36211" e_stop="36227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAGGTACTGCATGTCCATCTTTTATGTAATAAATTCTAATATGGAAACCTCAAAGATTAAAAAAGTTGAAGTTTATGGTTTAACGCGCTCTCTCAATGCATTTGGTTTCCATGATATGCATTACAACAGGTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAGGTAACCTTTTCCTTTGGTTATTGCCAATGCCTGCTATATTGTTTTCTTGTACTTATACGATACCTCTGTTTTTTAACTATTTTTAAATTTATATATCTGCTTTTAAATTGGTGCCAAAAGAATTGTCTTCTTACCTGCACAACTTTTAGAAAGGCATTGAAATAAATTGAAATCATGATTAGCAATTGTTTGCTCAAATATCAAAGAAATTATTTATTGCCTCTCTGCTGTTTTTTTCCCAGTGTGGAATAGAAGTAGCATCAATTCATCACAACTCTCAAAAAGATGCAGGAAAGAAAGATTGCATTTGACTTCTAATGTATAAACCTGCTTTCTACTTATACAACATGAGTTCTCCAAAAGGATGACCTAGTGGTTGAGGCATGAGAGATCCCAGGTTCTCATTCTAGCTACCACATTTGTTTGACCCATGCTCTAGCCTTGAGAAGAGGATTACCTTGGGAACTTATACCTGTGGGCTGTCCACGCTGTGTGATGTATTAGTGGGGTGCACAAGCTAGCTTGAGACAAAATGCTTTGGGTTGTCATTTTACCATCTAACGACTCCTTTCCAAAACTGATGTCCGTTGGTTTTGCTAGAGCTTGCAAATTTGTAAAAGAAAATGAACAGGAGAAATACTAAGTATCTCTAAATACAACGTTTCTACTCTACTAGTCCAGACCACATCCAATATATATATATTGGAAAAACTATATATTTCTAGTCTACCAAACAAATTAAGAATTTTTTTTCTTGGACTATTTAATTATATAATTAGAAGTAGTAAAGGAAGATACCCCAAGGATTCTGGGGGTTTCAATGGTGATGTACATGCTTAGATTTTATATACTTGTAGTGGCACTTCGGGGCTTGTGGATTGTTTGGGTATGCCGCATGCTTAAACTTTGATGATACTTAGTGGATCTAGTTTGGACATGTAAGGTTTGCTATGAAATGTACATAATGTTTGGGAATACCTTTTTCTACTTGAGATTCATCTGGTAATTGGTATAGTAACATTTTTACTGTCATTGTAGACTCAGCAACATCCTTTGGTGCTATTCTAAATTAGAACAACAACATACTCAGTGTGATCCCACAAGTGGGAAGAGGGGGAGGGTACTCTGTTTTTATTCATTATTTATTTTGTTACTGCATTATTCTCTTCATTTGTATGTAATAAATATATGCTTTTGTGTTAGCAATTCTATTTAGAATTGGCAATTGGCATAGAGTTGACAATGAATCAGTGAAGTCTTCTTTTCATGTAGATGAGTATAAGTATATGTCTTAGTGGTTAGGAAGTGATCAAAGAAGTTGAGGGGGCTTGTTGTTCCTTTGAATGGTTGAAGCCCGCGGATTTAGAAATAAGGGGGAAATCTAAATCTTGTTTGAGAATTGTAACTTCTTTATTTGTATTTTTTGAAAGAAAAAATAAAATTTGAAGAGTATATGTGGAGCAGGCATTCAGTGTTTATTATTTTATAACTATACTGGGAATCCATAAGTTTTATTTATTTTATATCCCCCTCATTCTTCGTTCTCTAACATGTTGGAAGTTTTATCTCTGCTGGAGTTGTCATGTAGATGAACTCATGCCAGTTTCAATAAAATGCTTGTAAGTAAGTGGCAGAAGTTTCATGTTTCCTTGCCCTCATGTTGCAGAGAAATCCTTTCTTGTCGACCTGATGAAATTTTGTGGAAACTAGTGGTAGTTATGACTGATGTTGCTATTTCACCTATGTCGTCCCACTATGAACTAATAGTTACATCAAAGCTTGTTCCACTGTATGTAATACTTGGAAGACATTAGAGAGTTGATGAGAGAATGATGATAGGAAACTTTGGCTAGTTCAGTTAAAGCATTCATTTGTTGTTTCACTCAAAGACAACATAATGTCCATTAAATCCCAAAAGCTAGCTTAAGAGGTGAACGTTGCACAACATCATATAAGGAGACAATAATCACATTTGTTCAATAGACATAGGAGGATCTAACAGCCTCACCCCACACGCTCTAGCTTGTCTAACTGGAGCGTGAATAACGTAAAGCTGGGTTCTGATATCCATGAAGTAGACCTTGCCTGTAGCTTAACCTCAAAAGTTAGGTCATGCAATGAGGATAAAGACCATACGAGGAGACAACCTATTTCTACCTGCCAATATGGGGCAATTTGAAAGTTATCCTTCCCAAAATTTGACTGCTATGCTCTGTCTGTTCCCTTCAGGCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACTGTGAGTTTCTTGACTAACCTAATCCAACTATTCAGTTTTGTGAACTCCATTTCCTTCCTAATATCGTATTTATCTCTCTGCAGCCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTTACTTGACTCAACATAACTTGGAACTACTAGAGTTCTCATTTTCCACACATATGTTATGTTAGAATCGATGTATATCGATTATAAGATGTGAAATAAGAATATGAGAATTTAGCTTTCTTGATTACTCTCCATAGTAAAATAAAAACATTGGCAAGACAAGTACATCACATCCATTTTCTCTAATGAGACTTCATTATCCACGGCTATACACTGAATTTAGTTAGAACTAATTTACGACATTCATAGACATTATCTGCTTCATATTTAAACAGAAGAAGTCATAGAAAAAAAAAAGAAGAAA</genome_strand>
        <mrna_strand>AATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAG..............................................................................................................................GTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACT...................................................................................CCTCTGTTTGTGATCAAGCCATAGAACCGTTTGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTT............................................................................................................................................................................................................................................................................................AAAAAAAAAA-AAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537497" ref_strand="+" ref_description="SGN-E537497 [TUS-56-C3](-)">
      <seq>agcaaagtcagctgattcatctcttcctccgctcaaatccccaatggcagggacattctatagaagtccagcacccggtgaaccagcatttgtgaaggtcggagacaaagtgcagaagggtcaagttctttgcattattgaagcgatgaagttgatgaacgaaatagaggctgatcgatcaggaaccatcgttgaggttgttgctgaagatggaaaacctgtcagtgttgatactcctctgtttgtgatcaagccatagaaccgttcgagtaagacccgggaaacaatatgcagaggaacttggcaagtgtttgtttaccttgggcttatgatattttgcagtatttcagtttcagtgagtatgtttgcaatgactggtagcgtgatggaaattggaatagacgattctggttaaaactcattaggagagtttagtgtttaatctgaggtattctttggcattttattgtgggattctagcttactcattttttcctttttcangtttgacatatttatgtgaggtttgtacctcgataacaatcttcatcgccattatgataaggattgntatgcagttttgataagaaaaaaaaaaaaaaaaacgggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="32546" stop="36166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32846" g_stop="32942" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32943" i_stop="33068" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33069" g_stop="33140" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="169" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33141" i_stop="35369" i_length="2229">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35370" g_stop="35435" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="235" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35519" g_stop="35862" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="583" r_length="348" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="589" polyA_stop="606"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E537497" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32846" e_stop="32942"/>
          <exon e_start="33069" e_stop="33140"/>
          <exon e_start="35370" e_stop="35435"/>
          <exon e_start="35519" e_stop="35862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAGGTACTGCATGTCCATCTTTTATGTAATAAATTCTAATATGGAAACCTCAAAGATTAAAAAAGTTGAAGTTTATGGTTTAACGCGCTCTCTCAATGCATTTGGTTTCCATGATATGCATTACAACAGGTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAGGTAACCTTTTCCTTTGGTTATTGCCAATGCCTGCTATATTGTTTTCTTGTACTTATACGATACCTCTGTTTTTTAACTATTTTTAAATTTATATATCTGCTTTTAAATTGGTGCCAAAAGAATTGTCTTCTTACCTGCACAACTTTTAGAAAGGCATTGAAATAAATTGAAATCATGATTAGCAATTGTTTGCTCAAATATCAAAGAAATTATTTATTGCCTCTCTGCTGTTTTTTTCCCAGTGTGGAATAGAAGTAGCATCAATTCATCACAACTCTCAAAAAGATGCAGGAAAGAAAGATTGCATTTGACTTCTAATGTATAAACCTGCTTTCTACTTATACAACATGAGTTCTCCAAAAGGATGACCTAGTGGTTGAGGCATGAGAGATCCCAGGTTCTCATTCTAGCTACCACATTTGTTTGACCCATGCTCTAGCCTTGAGAAGAGGATTACCTTGGGAACTTATACCTGTGGGCTGTCCACGCTGTGTGATGTATTAGTGGGGTGCACAAGCTAGCTTGAGACAAAATGCTTTGGGTTGTCATTTTACCATCTAACGACTCCTTTCCAAAACTGATGTCCGTTGGTTTTGCTAGAGCTTGCAAATTTGTAAAAGAAAATGAACAGGAGAAATACTAAGTATCTCTAAATACAACGTTTCTACTCTACTAGTCCAGACCACATCCAATATATATATATTGGAAAAACTATATATTTCTAGTCTACCAAACAAATTAAGAATTTTTTTTCTTGGACTATTTAATTATATAATTAGAAGTAGTAAAGGAAGATACCCCAAGGATTCTGGGGGTTTCAATGGTGATGTACATGCTTAGATTTTATATACTTGTAGTGGCACTTCGGGGCTTGTGGATTGTTTGGGTATGCCGCATGCTTAAACTTTGATGATACTTAGTGGATCTAGTTTGGACATGTAAGGTTTGCTATGAAATGTACATAATGTTTGGGAATACCTTTTTCTACTTGAGATTCATCTGGTAATTGGTATAGTAACATTTTTACTGTCATTGTAGACTCAGCAACATCCTTTGGTGCTATTCTAAATTAGAACAACAACATACTCAGTGTGATCCCACAAGTGGGAAGAGGGGGAGGGTACTCTGTTTTTATTCATTATTTATTTTGTTACTGCATTATTCTCTTCATTTGTATGTAATAAATATATGCTTTTGTGTTAGCAATTCTATTTAGAATTGGCAATTGGCATAGAGTTGACAATGAATCAGTGAAGTCTTCTTTTCATGTAGATGAGTATAAGTATATGTCTTAGTGGTTAGGAAGTGATCAAAGAAGTTGAGGGGGCTTGTTGTTCCTTTGAATGGTTGAAGCCCGCGGATTTAGAAATAAGGGGGAAATCTAAATCTTGTTTGAGAATTGTAACTTCTTTATTTGTATTTTTTGAAAGAAAAAATAAAATTTGAAGAGTATATGTGGAGCAGGCATTCAGTGTTTATTATTTTATAACTATACTGGGAATCCATAAGTTTTATTTATTTTATATCCCCCTCATTCTTCGTTCTCTAACATGTTGGAAGTTTTATCTCTGCTGGAGTTGTCATGTAGATGAACTCATGCCAGTTTCAATAAAATGCTTGTAAGTAAGTGGCAGAAGTTTCATGTTTCCTTGCCCTCATGTTGCAGAGAAATCCTTTCTTGTCGACCTGATGAAATTTTGTGGAAACTAGTGGTAGTTATGACTGATGTTGCTATTTCACCTATGTCGTCCCACTATGAACTAATAGTTACATCAAAGCTTGTTCCACTGTATGTAATACTTGGAAGACATTAGAGAGTTGATGAGAGAATGATGATAGGAAACTTTGGCTAGTTCAGTTAAAGCATTCATTTGTTGTTTCACTCAAAGACAACATAATGTCCATTAAATCCCAAAAGCTAGCTTAAGAGGTGAACGTTGCACAACATCATATAAGGAGACAATAATCACATTTGTTCAATAGACATAGGAGGATCTAACAGCCTCACCCCACACGCTCTAGCTTGTCTAACTGGAGCGTGAATAACGTAAAGCTGGGTTCTGATATCCATGAAGTAGACCTTGCCTGTAGCTTAACCTCAAAAGTTAGGTCATGCAATGAGGATAAAGACCATACGAGGAGACAACCTATTTCTACCTGCCAATATGGGGCAATTTGAAAGTTATCCTTCCCAAAATTTGACTGCTATGCTCTGTCTGTTCCCTTCAGGCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACTGTGAGTTTCTTGACTAACCTAATCCAACTATTCAGTTTTGTGAACTCCATTTCCTTCCTAATATCGTATTTATCTCTCTGCAGCCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCA-GTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATC-TCATCG-CATTATGATAAGGATTG-TATGCAGTTTTG</genome_strand>
        <mrna_strand>AGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAG..............................................................................................................................GTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACT...................................................................................CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCANGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTTCATCGCCATTATGATAAGGATTGNTATGCAGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548017" ref_strand="+" ref_description="SGN-E548017 [TUS-57-D17](-)">
      <seq>aagtgcagaagggtcaagttctttgcattattgaagcgatgaagttgatgaacgaaatagaggctgatcgatcaggaaccatcgttgaggttgttgctgaagatggaaaacctgtcagtgttgatactcctctgtttgtgatcaagccatagaaccgttcgagtaagacccgggaaacaatatgcagaggaacttggcaagtgtttgtttaccttgggcttatgatattttgcagtatttcagtttcagtgagtatgtttgcaatgactggtagcgtgatggaaattggaatagacgattctggttaaaactcattaggagagtttagtgtttaatctgaggtattctttggcattttattgtgggattctagcttactcattttttcctttttcagtttgacatatttatgtgaggtttgtacctcgataacaatctcatcgcattatgataaggattgtatgcagttttgattatttagcccctggccaatacgatacttataattgctattttatgtgaaatagtttcaatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="32779" stop="36227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33079" g_stop="33140" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33141" i_stop="35369" i_length="2229">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35370" g_stop="35435" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="128" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35519" g_stop="35943" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="553" r_length="425" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E548017" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33079" e_stop="33140"/>
          <exon e_start="35370" e_stop="35435"/>
          <exon e_start="35519" e_stop="35943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAGGTAACCTTTTCCTTTGGTTATTGCCAATGCCTGCTATATTGTTTTCTTGTACTTATACGATACCTCTGTTTTTTAACTATTTTTAAATTTATATATCTGCTTTTAAATTGGTGCCAAAAGAATTGTCTTCTTACCTGCACAACTTTTAGAAAGGCATTGAAATAAATTGAAATCATGATTAGCAATTGTTTGCTCAAATATCAAAGAAATTATTTATTGCCTCTCTGCTGTTTTTTTCCCAGTGTGGAATAGAAGTAGCATCAATTCATCACAACTCTCAAAAAGATGCAGGAAAGAAAGATTGCATTTGACTTCTAATGTATAAACCTGCTTTCTACTTATACAACATGAGTTCTCCAAAAGGATGACCTAGTGGTTGAGGCATGAGAGATCCCAGGTTCTCATTCTAGCTACCACATTTGTTTGACCCATGCTCTAGCCTTGAGAAGAGGATTACCTTGGGAACTTATACCTGTGGGCTGTCCACGCTGTGTGATGTATTAGTGGGGTGCACAAGCTAGCTTGAGACAAAATGCTTTGGGTTGTCATTTTACCATCTAACGACTCCTTTCCAAAACTGATGTCCGTTGGTTTTGCTAGAGCTTGCAAATTTGTAAAAGAAAATGAACAGGAGAAATACTAAGTATCTCTAAATACAACGTTTCTACTCTACTAGTCCAGACCACATCCAATATATATATATTGGAAAAACTATATATTTCTAGTCTACCAAACAAATTAAGAATTTTTTTTCTTGGACTATTTAATTATATAATTAGAAGTAGTAAAGGAAGATACCCCAAGGATTCTGGGGGTTTCAATGGTGATGTACATGCTTAGATTTTATATACTTGTAGTGGCACTTCGGGGCTTGTGGATTGTTTGGGTATGCCGCATGCTTAAACTTTGATGATACTTAGTGGATCTAGTTTGGACATGTAAGGTTTGCTATGAAATGTACATAATGTTTGGGAATACCTTTTTCTACTTGAGATTCATCTGGTAATTGGTATAGTAACATTTTTACTGTCATTGTAGACTCAGCAACATCCTTTGGTGCTATTCTAAATTAGAACAACAACATACTCAGTGTGATCCCACAAGTGGGAAGAGGGGGAGGGTACTCTGTTTTTATTCATTATTTATTTTGTTACTGCATTATTCTCTTCATTTGTATGTAATAAATATATGCTTTTGTGTTAGCAATTCTATTTAGAATTGGCAATTGGCATAGAGTTGACAATGAATCAGTGAAGTCTTCTTTTCATGTAGATGAGTATAAGTATATGTCTTAGTGGTTAGGAAGTGATCAAAGAAGTTGAGGGGGCTTGTTGTTCCTTTGAATGGTTGAAGCCCGCGGATTTAGAAATAAGGGGGAAATCTAAATCTTGTTTGAGAATTGTAACTTCTTTATTTGTATTTTTTGAAAGAAAAAATAAAATTTGAAGAGTATATGTGGAGCAGGCATTCAGTGTTTATTATTTTATAACTATACTGGGAATCCATAAGTTTTATTTATTTTATATCCCCCTCATTCTTCGTTCTCTAACATGTTGGAAGTTTTATCTCTGCTGGAGTTGTCATGTAGATGAACTCATGCCAGTTTCAATAAAATGCTTGTAAGTAAGTGGCAGAAGTTTCATGTTTCCTTGCCCTCATGTTGCAGAGAAATCCTTTCTTGTCGACCTGATGAAATTTTGTGGAAACTAGTGGTAGTTATGACTGATGTTGCTATTTCACCTATGTCGTCCCACTATGAACTAATAGTTACATCAAAGCTTGTTCCACTGTATGTAATACTTGGAAGACATTAGAGAGTTGATGAGAGAATGATGATAGGAAACTTTGGCTAGTTCAGTTAAAGCATTCATTTGTTGTTTCACTCAAAGACAACATAATGTCCATTAAATCCCAAAAGCTAGCTTAAGAGGTGAACGTTGCACAACATCATATAAGGAGACAATAATCACATTTGTTCAATAGACATAGGAGGATCTAACAGCCTCACCCCACACGCTCTAGCTTGTCTAACTGGAGCGTGAATAACGTAAAGCTGGGTTCTGATATCCATGAAGTAGACCTTGCCTGTAGCTTAACCTCAAAAGTTAGGTCATGCAATGAGGATAAAGACCATACGAGGAGACAACCTATTTCTACCTGCCAATATGGGGCAATTTGAAAGTTATCCTTCCCAAAATTTGACTGCTATGCTCTGTCTGTTCCCTTCAGGCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACTGTGAGTTTCTTGACTAACCTAATCCAACTATTCAGTTTTGTGAACTCCATTTCCTTCCTAATATCGTATTTATCTCTCTGCAGCCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTTACTTGACTCAACATAAC</genome_strand>
        <mrna_strand>AAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACT...................................................................................CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539151" ref_strand="+" ref_description="SGN-E539151 [TUS-58-M5]">
      <seq>tgaagatggaaaacctgtcagtgttgatactcctctgtttgtgatcaagccatagaaccgttcgagtaagacccgggaaacaatatgcagaggaacttggcaagtgtttgtttaccttgggcttatgatattttgcagtatttcagtttcagtgagtatgtttgcaatgactggtagcgtgatggaaattggaatagacgattctggttaaaactcattaggagagtttagtgtttaatctgaggtattctttggcattttattgtgggattctagcttactcattttttcctttttcagtttgacatatttatgtgaggtttgtacctcgataacaatctcatcgcattatgataaggattgtatgcagttttgattatttagcccctggccaatacgatacttataattgctattttatgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="35105" stop="36216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35405" g_stop="35435" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35519" g_stop="35916" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="429" r_length="398" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35917" i_stop="36198" i_length="282">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.705" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36199" g_stop="36203" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="434" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E539151" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35405" e_stop="35435"/>
          <exon e_start="35519" e_stop="35916"/>
          <exon e_start="36199" e_stop="36203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGGAAAACCTGTCAGTGTTGATACTGTGAGTTTCTTGACTAACCTAATCCAACTATTCAGTTTTGTGAACTCCATTTCCTTCCTAATATCGTATTTATCTCTCTGCAGCCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTTACTTGACTCAACATAACTTGGAACTACTAGAGTTCTCATTTTCCACACATATGTTATGTTAGAATCGATGTATATCGATTATAAGATGTGAAATAAGAATATGAGAATTTAGCTTTCTTGATTACTCTCCATAGTAAAATAAAAACATTGGCAAGACAAGTACATCACATCCATTTTCTCTAATGAGACTTCATTATCCACGGCTATACACTGAATTTAGTTAGAACTAATTTACGACATTCATAGACATTATCTGCTTCATATTTAAACAGAAGAA</genome_strand>
        <mrna_strand>TGAAGATGGAAAACCTGTCAGTGTTGATACT...................................................................................CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAAAA..........................................................................................................................................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539158" ref_strand="+" ref_description="SGN-E539158 [TUS-58-M9]">
      <seq>tgaagatggaaaacctgtcagtgttgatactcctctgtttgtgatcaagccatagaaccgttcgagtaagacccgggaaacaatatgcagaggaacttggcaagtgtttgtttaccttgggcttatgatattttgcagtatttcagtttcagtgagtatgtttgcaatgactggtagcgtgatggaaattggaatagacgattctggttaaaactcattaggagagtttagtgtttaatctgaggtattctttggcattttattgtgggattctagcttactcattttttcctttttcagtttgacatatttatgtgaggtttgtacctcgataacaatctcatcgcattatgataaggattgtatgcagttttgattatttagcccctggccaatacgatacttataattgctattttatgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="35105" stop="36216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35405" g_stop="35435" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35519" g_stop="35916" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="429" r_length="398" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35917" i_stop="36198" i_length="282">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.705" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36199" g_stop="36203" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="434" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E539158" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35405" e_stop="35435"/>
          <exon e_start="35519" e_stop="35916"/>
          <exon e_start="36199" e_stop="36203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGGAAAACCTGTCAGTGTTGATACTGTGAGTTTCTTGACTAACCTAATCCAACTATTCAGTTTTGTGAACTCCATTTCCTTCCTAATATCGTATTTATCTCTCTGCAGCCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTTACTTGACTCAACATAACTTGGAACTACTAGAGTTCTCATTTTCCACACATATGTTATGTTAGAATCGATGTATATCGATTATAAGATGTGAAATAAGAATATGAGAATTTAGCTTTCTTGATTACTCTCCATAGTAAAATAAAAACATTGGCAAGACAAGTACATCACATCCATTTTCTCTAATGAGACTTCATTATCCACGGCTATACACTGAATTTAGTTAGAACTAATTTACGACATTCATAGACATTATCTGCTTCATATTTAAACAGAAGAA</genome_strand>
        <mrna_strand>TGAAGATGGAAAACCTGTCAGTGTTGATACT...................................................................................CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAAAA..........................................................................................................................................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539155" ref_strand="+" ref_description="SGN-E539155 [TUS-58-M9](-)">
      <seq>tgaagatggaaaacctgtcagtgttgatactcctctgtttgtgatcaagccatagaaccgttcgagtaagacccgggaaacaatatgcagaggaacttggcaagtgtttgtttaccttgggcttatgatattttgcagtatttcagtttcagtgagtatgtttgcaatgactggtagcgtgatggaaattggaatagacgattctggttaaaactcattaggagagtttagtgtttaatctgaggtattctttggcattttattgtgggattctagcttactcattttttcctttttcagtttgacatatttatgtgaggtttgtacctcgataacaatctcatcgcattatgataaggattgtatgcagttttgattatttagcccctggccaatacgatacttataattgctattttatcgaaaaaagaaaaaaaaaaactcgaggggggcccggtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="35105" stop="36217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35405" g_stop="35435" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35519" g_stop="35908" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="421" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="441"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E539155" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35405" e_stop="35435"/>
          <exon e_start="35519" e_stop="35908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGGAAAACCTGTCAGTGTTGATACTGTGAGTTTCTTGACTAACCTAATCCAACTATTCAGTTTTGTGAACTCCATTTCCTTCCTAATATCGTATTTATCTCTCTGCAGCCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTAT</genome_strand>
        <mrna_strand>TGAAGATGGAAAACCTGTCAGTGTTGATACT...................................................................................CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279891" ref_strand="+" ref_description="SGN-E279891 [cLER-8-K23]">
      <seq>gaagatggaaaacctgtcagtgttgatactcctctgtttgtgatcaagccatagaaccgttcgagtaagacccgggaaacaatatgcagaggaacttggcaagtgtttgtttaccttgggcttatgatattttgcagtatttcagtttcagtgagtatgtttgcaatgactggtagcgtgatggaaattggaatagacgattctggttaaaactcattaggagagtttagtgtttaatctgaggtattctttggcattttattgtgggattctagcttactcattttttcctttttcagtttgacatatttatgtgaggtttgtacctcgataacaatctcatcgcattatgataaggattgtatgcagttttgattatttagcccctggccaatacgatacttataattgctattttatgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="35106" stop="36216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35406" g_stop="35435" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35519" g_stop="35916" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="428" r_length="398" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35917" i_stop="36198" i_length="282">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.705" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36199" g_stop="36203" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="433" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E279891" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35406" e_stop="35435"/>
          <exon e_start="35519" e_stop="35916"/>
          <exon e_start="36199" e_stop="36203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGGAAAACCTGTCAGTGTTGATACTGTGAGTTTCTTGACTAACCTAATCCAACTATTCAGTTTTGTGAACTCCATTTCCTTCCTAATATCGTATTTATCTCTCTGCAGCCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTTACTTGACTCAACATAACTTGGAACTACTAGAGTTCTCATTTTCCACACATATGTTATGTTAGAATCGATGTATATCGATTATAAGATGTGAAATAAGAATATGAGAATTTAGCTTTCTTGATTACTCTCCATAGTAAAATAAAAACATTGGCAAGACAAGTACATCACATCCATTTTCTCTAATGAGACTTCATTATCCACGGCTATACACTGAATTTAGTTAGAACTAATTTACGACATTCATAGACATTATCTGCTTCATATTTAAACAGAAGAA</genome_strand>
        <mrna_strand>GAAGATGGAAAACCTGTCAGTGTTGATACT...................................................................................CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAAAA..........................................................................................................................................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548173" ref_strand="+" ref_description="SGN-E548173 [TUS-58-M5](-)">
      <seq>atagacgattctggttaaaactcattaggagagtttagtgtttaatctgaggtattctttggcattttattgtgggattctagcttactcattttttcctttttcagtttgacatatttatgtgaggtttgtacctcgataacaatctcatcgcattatgataaggattgtatgcagttttgattatttagcccctggccaatacgatacttataattgctattttatgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="35381" stop="36216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35681" g_stop="35916" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35917" i_stop="36198" i_length="282">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.705" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36199" g_stop="36203" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="241" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E548173" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35681" e_stop="35916"/>
          <exon e_start="36199" e_stop="36203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTTACTTGACTCAACATAACTTGGAACTACTAGAGTTCTCATTTTCCACACATATGTTATGTTAGAATCGATGTATATCGATTATAAGATGTGAAATAAGAATATGAGAATTTAGCTTTCTTGATTACTCTCCATAGTAAAATAAAAACATTGGCAAGACAAGTACATCACATCCATTTTCTCTAATGAGACTTCATTATCCACGGCTATACACTGAATTTAGTTAGAACTAATTTACGACATTCATAGACATTATCTGCTTCATATTTAAACAGAAGAA</genome_strand>
        <mrna_strand>ATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAAAA..........................................................................................................................................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729506" ref_strand="+" ref_description="SGN-E729506 [LA21BB03]">
      <seq>tacaagttcaagtaaatcaggtaccattgaagtcatcaatggcgccggtgccggcgcagtcagcatcttcttcgtggaggttcaacaaacagtcagtggtatgcgttgcaggagattatggcttctcgtctagggttttgaggaacagaggattgagcttgagggtgaagtgtagtagctcagatgctactgttactactacgactgtgacggtgggacaggtgacggaagtttgtaaggataccttttggccgattgttgaagccgccggtgaaaaaaccgttgtagttgacatgtatacacagtggtgtggtccttgtaaagtgattgctccaaagtttcaagagctatcaaagaaatataacgatgtggtctttctgaagctggactgtaaccaggacaacaggccactagcaaaggaactaggcataaaggtggttccaacattcaagattctgaagaacaataagatcgttaaagaagtcaccggagcaaaacttgatgatttagtagcagcaattgagggtgtgcgatcaagttaaatatttcttcttttttttttctatgacttcttctgtttaaatatgaagcagataatgtctatgaatgtcgtaaattagttctaactaaattcagtgtatagccgtggataatgaagtctcattagagaaaatggatgtgatgtacttgtcttgccaatgtttttattttactatggagagtaatcaagaaagctaaattctcataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="38806" stop="35726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38506" g_stop="38200" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38199" i_stop="36544" i_length="1656">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36543" g_stop="36444" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="407" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36365" g_stop="36029" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="744" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="745" polyA_stop="755"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E729506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38506" e_stop="38200"/>
          <exon e_start="36543" e_stop="36444"/>
          <exon e_start="36365" e_stop="36029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGTTCAAGTAAATCAGGTACCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAGTCAGCATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTGGTAAAATTACATATACTTTCTATTTCCTTTTAGATTTGATGAATTTAGTGCTTAATTATGACTATTACTAGTATAAATCACTGCTAATTTTGTTTTATCCTTTCTCTCAAGTCCTTTTTAGCGTAATCCTGATAAAAGATGAGGAGGATTGGCGTAATTTGATAGTTAAGGTAATTATAATCATGATTATGACAATTAACATATAAAGGTGAGTCTTACTGGTCAATGAAGCTCGAAATGAACTATCTTGGTTGAACAAGGTTCGAAGTATAAGATATTTGAGGTCCGAGTAAACTGAGCTGCACACTACTTCTGTATAATAAAGAGGAAAAGAAACTAAGATGAATTCTGTGAATACTGCAACAGAGTTCTATTCGTTTTCCTGAACAGAATATAATAGATGATGAGTCCATAGACTGGAACAGAATGGATTAAGAGGATTCATATAGCTGACTCTAATTCATTTGTGATTGATGTGTGCTAGATGATTGGCAGAATCCTTATCTTATTAGGAGGAAGGAGGTTTCCGAGTGAACAACCAGATACTTACGAGAGATCATTTGAACTAAAAAGATCTGGTTTTCATGTCATTCCATAATGGAAAACTAATTGGATGTGTAAGAGGAAATTATTTGAACTTAAATGGTGTGGTTCTCATGTCATTCCACGATTGGCGAGAAGTTTGCTTTACTAACATAATTAGGGAGGTTGTAGAGTAGGAGAATGAAGTTTAAACTTTAAATATGTTTGATGAAAATGAATTTTTGTTTTTATAAGGAAATCCCACTAAACTAGACTTGTACGCATTGATATGAAAAGTAGAGGCAAATGGAGTCAAAGGTGAATCCCCAATCAGCAAAGGGAGATGAACTCTTATTTGGAGAACTTGGAGCAGAAAGTTATCTTCAACATTTAATGCTTAGCTTTGATTAGCCTCTCATCGTTTGCGTTCTCTTAAATTGAAGTGATTATTGAGATCAATCATTGATAGATAGTTGAGACCATTTATCATTGCGGGTTACTTGGCTTAAGCTATTTTAAATTGACTCTGCTTTGTCTTGACCTTACAGGGTGGGGTTTATGTAGTAAAATCTTATTTAGATGTTGCAGAAAGAATGTTAACTGGTAGTTGATAGTTCTATAAGTTTCTGTTGTCGCCAAACTGTTTTGAAGATGGGGTAGATTCTACCTAGGTGGGTAGTGGGTATATGATTGAGAAGCAAAATTGCTCTCGTCCATAGGCTCTACAGCTTGCAAATGAAAGCCTCACATGTGCCAAGATATTACAGAGTGAAAAAGTAAGTACAAGAGAGAGGAACACCAACGAATTTCACTATTGATCTTCATGTATTCATCTTAAAGAAAACGGATAATAAAATGGACTGGGCAACTATTGGAGACTAATGAATTGTCAATTGTTTTGGAAGACATGTTTTTTCTGCTTTTGAAAGTGTAGGATTTTGAAGAGTGTCTGATATATCGTTACTTGATTGAATGCTTCTTTGAATTTTGAGCTAGATGTTTTCTGGACCTTACTTTTATCTATCATCAGTAATAATTGGTTAGTTGTGCCTCTGGGAAACAGTTTTTCGACAGTGTCTTCTCCCACTGTCTTGGTTTTCCGTATTGTGATTTCTGATTTCAATCCACCTGCAGGTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAATCAAGAAAGCTAAATTCTC</genome_strand>
        <mrna_strand>TACAAGTTCAAGTAAATCAGGTACCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAGTCAGCATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG..............................................................................CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAATCAAGAAAGCTAAATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732282" ref_strand="+" ref_description="SGN-E732282 [LB01DA07]">
      <seq>cgttcaagtaaatcaggtaccattgaagtcatcaatggcgccggtgccggcgcagtcagcatcttcttcgtggaggttcaacaaacagtcagtggtatgcgttgcaggagattatggcttctcgtctagggttttgaggaacagaggattgagcttgagggtgaagtgtagtagctcagatgctactgttactactacgactgtgacggtgggacaggtgacggaagtttgtaaggataccttttggccgattgttgaagccgccggtgaaaaaaccgttgtagttgacatgtatacacagtggtgtggtccttgtaaagtgattgctccaaagtttcaagagctatcaaagaaatataacgatgtggtctttctgaagctggactgtaaccaggacaacaggccactagcaaaggaactaggcataaaggtggttccaacattcaagattctgaagaacaataagatcgttaaagaagtcaccggagcaaaacttgatgatttagtagcagcaattgagggtgtgcgatcaagttaaatatttcttcttttttttttctatgacttcttctgtttaaatatgaagcagataatgtctatgaatgtcgtaaattagttctaactaaattcagtgtatagccgtggataatgaagtctcattagagaaaatggatgtgatgtacttgtcttgccaatgtttttattttactatggagagtaatcaagaaagctaaattctcatattcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="38801" stop="35720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38502" g_stop="38200" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38199" i_stop="36544" i_length="1656">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36543" g_stop="36444" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="403" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36365" g_stop="36029" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="740" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="749" polyA_stop="766"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E732282" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38502" e_stop="38200"/>
          <exon e_start="36543" e_stop="36444"/>
          <exon e_start="36365" e_stop="36029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCAAGTAAATCAGGTACCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAGTCAGCATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTGGTAAAATTACATATACTTTCTATTTCCTTTTAGATTTGATGAATTTAGTGCTTAATTATGACTATTACTAGTATAAATCACTGCTAATTTTGTTTTATCCTTTCTCTCAAGTCCTTTTTAGCGTAATCCTGATAAAAGATGAGGAGGATTGGCGTAATTTGATAGTTAAGGTAATTATAATCATGATTATGACAATTAACATATAAAGGTGAGTCTTACTGGTCAATGAAGCTCGAAATGAACTATCTTGGTTGAACAAGGTTCGAAGTATAAGATATTTGAGGTCCGAGTAAACTGAGCTGCACACTACTTCTGTATAATAAAGAGGAAAAGAAACTAAGATGAATTCTGTGAATACTGCAACAGAGTTCTATTCGTTTTCCTGAACAGAATATAATAGATGATGAGTCCATAGACTGGAACAGAATGGATTAAGAGGATTCATATAGCTGACTCTAATTCATTTGTGATTGATGTGTGCTAGATGATTGGCAGAATCCTTATCTTATTAGGAGGAAGGAGGTTTCCGAGTGAACAACCAGATACTTACGAGAGATCATTTGAACTAAAAAGATCTGGTTTTCATGTCATTCCATAATGGAAAACTAATTGGATGTGTAAGAGGAAATTATTTGAACTTAAATGGTGTGGTTCTCATGTCATTCCACGATTGGCGAGAAGTTTGCTTTACTAACATAATTAGGGAGGTTGTAGAGTAGGAGAATGAAGTTTAAACTTTAAATATGTTTGATGAAAATGAATTTTTGTTTTTATAAGGAAATCCCACTAAACTAGACTTGTACGCATTGATATGAAAAGTAGAGGCAAATGGAGTCAAAGGTGAATCCCCAATCAGCAAAGGGAGATGAACTCTTATTTGGAGAACTTGGAGCAGAAAGTTATCTTCAACATTTAATGCTTAGCTTTGATTAGCCTCTCATCGTTTGCGTTCTCTTAAATTGAAGTGATTATTGAGATCAATCATTGATAGATAGTTGAGACCATTTATCATTGCGGGTTACTTGGCTTAAGCTATTTTAAATTGACTCTGCTTTGTCTTGACCTTACAGGGTGGGGTTTATGTAGTAAAATCTTATTTAGATGTTGCAGAAAGAATGTTAACTGGTAGTTGATAGTTCTATAAGTTTCTGTTGTCGCCAAACTGTTTTGAAGATGGGGTAGATTCTACCTAGGTGGGTAGTGGGTATATGATTGAGAAGCAAAATTGCTCTCGTCCATAGGCTCTACAGCTTGCAAATGAAAGCCTCACATGTGCCAAGATATTACAGAGTGAAAAAGTAAGTACAAGAGAGAGGAACACCAACGAATTTCACTATTGATCTTCATGTATTCATCTTAAAGAAAACGGATAATAAAATGGACTGGGCAACTATTGGAGACTAATGAATTGTCAATTGTTTTGGAAGACATGTTTTTTCTGCTTTTGAAAGTGTAGGATTTTGAAGAGTGTCTGATATATCGTTACTTGATTGAATGCTTCTTTGAATTTTGAGCTAGATGTTTTCTGGACCTTACTTTTATCTATCATCAGTAATAATTGGTTAGTTGTGCCTCTGGGAAACAGTTTTTCGACAGTGTCTTCTCCCACTGTCTTGGTTTTCCGTATTGTGATTTCTGATTTCAATCCACCTGCAGGTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAATCAAGAAAGCTAAATTCTC</genome_strand>
        <mrna_strand>CGTTCAAGTAAATCAGGTACCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAGTCAGCATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG..............................................................................CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAATCAAGAAAGCTAAATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349214" ref_strand="+" ref_description="SGN-E349214 [cTOS-2-O2]">
      <seq>atcttcttcgtggaggttcaacaaacagtcagtggtatgcgttgcaggagattatggcttctcgtctagggttttgaggaacagaggattgagcttgagggtgaagtgtagtagctcagatgctactgttactactacgactgtgacggtgggacaggtgacggaagtttgtaaggataccttttggccgattgttgaagccgccggtgaaaaaaccgttgtagttgacatgtatacacagtggtgtggtccttgtaaagtgattgctccaaagtttcaagagctatcaaagaaatataacgatgtggtctttctgaagctggactgtaaccaggacaacaggccactagcaaaggaactaggcataaaggtggttccaacattcaagattctgaagaacaataagatcgttaaagaagtcaccggagcaaaacttgatgatttagtagcagcaattgagggtgtgcgatcaagttaaatatttcttcttttttttttctatgacttcttctgtttaaatatgaagcagataatgtctatgaatgtcgtaaattagttctaactaaattcagtgtatagccgtggataatgaagtctcattagagaaaatggatgtgatgtacttgtcttgccaatgtttttattttactatggagagntatcaagaaannaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="38742" stop="35740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38442" g_stop="38200" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38199" i_stop="36544" i_length="1656">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36543" g_stop="36444" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="343" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36365" g_stop="36030" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="679" r_length="336" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E349214" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38442" e_stop="38200"/>
          <exon e_start="36543" e_stop="36444"/>
          <exon e_start="36365" e_stop="36030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTGGTAAAATTACATATACTTTCTATTTCCTTTTAGATTTGATGAATTTAGTGCTTAATTATGACTATTACTAGTATAAATCACTGCTAATTTTGTTTTATCCTTTCTCTCAAGTCCTTTTTAGCGTAATCCTGATAAAAGATGAGGAGGATTGGCGTAATTTGATAGTTAAGGTAATTATAATCATGATTATGACAATTAACATATAAAGGTGAGTCTTACTGGTCAATGAAGCTCGAAATGAACTATCTTGGTTGAACAAGGTTCGAAGTATAAGATATTTGAGGTCCGAGTAAACTGAGCTGCACACTACTTCTGTATAATAAAGAGGAAAAGAAACTAAGATGAATTCTGTGAATACTGCAACAGAGTTCTATTCGTTTTCCTGAACAGAATATAATAGATGATGAGTCCATAGACTGGAACAGAATGGATTAAGAGGATTCATATAGCTGACTCTAATTCATTTGTGATTGATGTGTGCTAGATGATTGGCAGAATCCTTATCTTATTAGGAGGAAGGAGGTTTCCGAGTGAACAACCAGATACTTACGAGAGATCATTTGAACTAAAAAGATCTGGTTTTCATGTCATTCCATAATGGAAAACTAATTGGATGTGTAAGAGGAAATTATTTGAACTTAAATGGTGTGGTTCTCATGTCATTCCACGATTGGCGAGAAGTTTGCTTTACTAACATAATTAGGGAGGTTGTAGAGTAGGAGAATGAAGTTTAAACTTTAAATATGTTTGATGAAAATGAATTTTTGTTTTTATAAGGAAATCCCACTAAACTAGACTTGTACGCATTGATATGAAAAGTAGAGGCAAATGGAGTCAAAGGTGAATCCCCAATCAGCAAAGGGAGATGAACTCTTATTTGGAGAACTTGGAGCAGAAAGTTATCTTCAACATTTAATGCTTAGCTTTGATTAGCCTCTCATCGTTTGCGTTCTCTTAAATTGAAGTGATTATTGAGATCAATCATTGATAGATAGTTGAGACCATTTATCATTGCGGGTTACTTGGCTTAAGCTATTTTAAATTGACTCTGCTTTGTCTTGACCTTACAGGGTGGGGTTTATGTAGTAAAATCTTATTTAGATGTTGCAGAAAGAATGTTAACTGGTAGTTGATAGTTCTATAAGTTTCTGTTGTCGCCAAACTGTTTTGAAGATGGGGTAGATTCTACCTAGGTGGGTAGTGGGTATATGATTGAGAAGCAAAATTGCTCTCGTCCATAGGCTCTACAGCTTGCAAATGAAAGCCTCACATGTGCCAAGATATTACAGAGTGAAAAAGTAAGTACAAGAGAGAGGAACACCAACGAATTTCACTATTGATCTTCATGTATTCATCTTAAAGAAAACGGATAATAAAATGGACTGGGCAACTATTGGAGACTAATGAATTGTCAATTGTTTTGGAAGACATGTTTTTTCTGCTTTTGAAAGTGTAGGATTTTGAAGAGTGTCTGATATATCGTTACTTGATTGAATGCTTCTTTGAATTTTGAGCTAGATGTTTTCTGGACCTTACTTTTATCTATCATCAGTAATAATTGGTTAGTTGTGCCTCTGGGAAACAGTTTTTCGACAGTGTCTTCTCCCACTGTCTTGGTTTTCCGTATTGTGATTTCTGATTTCAATCCACCTGCAGGTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAATCAAGAAAGCTAAATTCT</genome_strand>
        <mrna_strand>ATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG..............................................................................CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGNTATCAAGAAANNAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357480" ref_strand="+" ref_description="SGN-E357480 [cTOS-23-A14]">
      <seq>atcttcttcgtggaggttcaacaaacagtcagtggtatgcgttgcaggagattatggcttctcgtctagggttttgaggaacagaggattgagcttgagggtgaagtgtagtagctcagatgctactgttactactacgactgtgacggtgggacaggtgacggaagtttgtaaggataccttttggccgattgttgaagccgccggtgaaaaaaccgttgtagttgacatgtatacacagtggtgtggtccttgtaaagtgattgctccaaagtttcaagagctatcaaagaaatataacgatgtggtctttctgaagctggactgtaaccaggacaacaggccactagcaaaggaactaggcataaaggtggttccaacattcaagattctgaagaacaataagatcgttaaagaagtcaccggagcaaaacttgatgatttagtagcagcaattgagggtgtgcgatcaagttaaatatttcttcttttttttttctatgacttcttctgtttaaatatgaagcagataatgtctatgaatgtcgtaaattagttctaactaaattcagtgtatagccgtggataatgaagtctcattagagaaaatggatgtgatgtacttgtcttgcccatgtttttattttactatggagagntatcaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="38742" stop="35740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38442" g_stop="38200" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38199" i_stop="36544" i_length="1656">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36543" g_stop="36444" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="343" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36365" g_stop="36031" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="678" r_length="335" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E357480" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38442" e_stop="38200"/>
          <exon e_start="36543" e_stop="36444"/>
          <exon e_start="36365" e_stop="36031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTGGTAAAATTACATATACTTTCTATTTCCTTTTAGATTTGATGAATTTAGTGCTTAATTATGACTATTACTAGTATAAATCACTGCTAATTTTGTTTTATCCTTTCTCTCAAGTCCTTTTTAGCGTAATCCTGATAAAAGATGAGGAGGATTGGCGTAATTTGATAGTTAAGGTAATTATAATCATGATTATGACAATTAACATATAAAGGTGAGTCTTACTGGTCAATGAAGCTCGAAATGAACTATCTTGGTTGAACAAGGTTCGAAGTATAAGATATTTGAGGTCCGAGTAAACTGAGCTGCACACTACTTCTGTATAATAAAGAGGAAAAGAAACTAAGATGAATTCTGTGAATACTGCAACAGAGTTCTATTCGTTTTCCTGAACAGAATATAATAGATGATGAGTCCATAGACTGGAACAGAATGGATTAAGAGGATTCATATAGCTGACTCTAATTCATTTGTGATTGATGTGTGCTAGATGATTGGCAGAATCCTTATCTTATTAGGAGGAAGGAGGTTTCCGAGTGAACAACCAGATACTTACGAGAGATCATTTGAACTAAAAAGATCTGGTTTTCATGTCATTCCATAATGGAAAACTAATTGGATGTGTAAGAGGAAATTATTTGAACTTAAATGGTGTGGTTCTCATGTCATTCCACGATTGGCGAGAAGTTTGCTTTACTAACATAATTAGGGAGGTTGTAGAGTAGGAGAATGAAGTTTAAACTTTAAATATGTTTGATGAAAATGAATTTTTGTTTTTATAAGGAAATCCCACTAAACTAGACTTGTACGCATTGATATGAAAAGTAGAGGCAAATGGAGTCAAAGGTGAATCCCCAATCAGCAAAGGGAGATGAACTCTTATTTGGAGAACTTGGAGCAGAAAGTTATCTTCAACATTTAATGCTTAGCTTTGATTAGCCTCTCATCGTTTGCGTTCTCTTAAATTGAAGTGATTATTGAGATCAATCATTGATAGATAGTTGAGACCATTTATCATTGCGGGTTACTTGGCTTAAGCTATTTTAAATTGACTCTGCTTTGTCTTGACCTTACAGGGTGGGGTTTATGTAGTAAAATCTTATTTAGATGTTGCAGAAAGAATGTTAACTGGTAGTTGATAGTTCTATAAGTTTCTGTTGTCGCCAAACTGTTTTGAAGATGGGGTAGATTCTACCTAGGTGGGTAGTGGGTATATGATTGAGAAGCAAAATTGCTCTCGTCCATAGGCTCTACAGCTTGCAAATGAAAGCCTCACATGTGCCAAGATATTACAGAGTGAAAAAGTAAGTACAAGAGAGAGGAACACCAACGAATTTCACTATTGATCTTCATGTATTCATCTTAAAGAAAACGGATAATAAAATGGACTGGGCAACTATTGGAGACTAATGAATTGTCAATTGTTTTGGAAGACATGTTTTTTCTGCTTTTGAAAGTGTAGGATTTTGAAGAGTGTCTGATATATCGTTACTTGATTGAATGCTTCTTTGAATTTTGAGCTAGATGTTTTCTGGACCTTACTTTTATCTATCATCAGTAATAATTGGTTAGTTGTGCCTCTGGGAAACAGTTTTTCGACAGTGTCTTCTCCCACTGTCTTGGTTTTCCGTATTGTGATTTCTGATTTCAATCCACCTGCAGGTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAATCAAGAAAGCTAAATTC</genome_strand>
        <mrna_strand>ATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG..............................................................................CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCCATGTTTTTATTTTACTATGGAGAGNTATCAAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352127" ref_strand="+" ref_description="SGN-E352127 [cTOS-13-A17]">
      <seq>atcttcttcgtggaggttcaacaaacagtcagtggtatgcgttgcaggagattatggcttctcgtctagggttttgaggaacagaggattgagcttgagggtgaagtgtagtagctcagatgctactgttactactacgactgtgacggtgggacaggtgacggaagtttgtaaggataccttttggccgattgttgaagccgccggtgaaaaaaccgttgtagttgacatgtatacacagtggtgtggtccttgtaaagtgattgctccaaagtttcaagagctatcaaagaaatataacgatgtggtctttctgaagctggactgtaaccaggacaacaggccactagcaaaggaactaggcataaaggtggttccaacattcaagattctgaagaacaataagatcgttaaagaagtcaccggagcaaaacttgatgatttagtagcagcaattgagggtgtgcgatcaagttaaatatttcttcttttttttttctatgacttcttctgtttaaatatgaagcagataatgtctatgaatgtcgtaaattagttctaactaaattcagtgtatagccgtggataatgaagtctcattagagaaaatggatgtgatgtacttgtcttgccaatgtttttattttactatggagagtaatcaagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="38742" stop="35740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38442" g_stop="38200" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38199" i_stop="36544" i_length="1656">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36543" g_stop="36444" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="343" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36365" g_stop="36040" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="669" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="680"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E352127" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38442" e_stop="38200"/>
          <exon e_start="36543" e_stop="36444"/>
          <exon e_start="36365" e_stop="36040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTGGTAAAATTACATATACTTTCTATTTCCTTTTAGATTTGATGAATTTAGTGCTTAATTATGACTATTACTAGTATAAATCACTGCTAATTTTGTTTTATCCTTTCTCTCAAGTCCTTTTTAGCGTAATCCTGATAAAAGATGAGGAGGATTGGCGTAATTTGATAGTTAAGGTAATTATAATCATGATTATGACAATTAACATATAAAGGTGAGTCTTACTGGTCAATGAAGCTCGAAATGAACTATCTTGGTTGAACAAGGTTCGAAGTATAAGATATTTGAGGTCCGAGTAAACTGAGCTGCACACTACTTCTGTATAATAAAGAGGAAAAGAAACTAAGATGAATTCTGTGAATACTGCAACAGAGTTCTATTCGTTTTCCTGAACAGAATATAATAGATGATGAGTCCATAGACTGGAACAGAATGGATTAAGAGGATTCATATAGCTGACTCTAATTCATTTGTGATTGATGTGTGCTAGATGATTGGCAGAATCCTTATCTTATTAGGAGGAAGGAGGTTTCCGAGTGAACAACCAGATACTTACGAGAGATCATTTGAACTAAAAAGATCTGGTTTTCATGTCATTCCATAATGGAAAACTAATTGGATGTGTAAGAGGAAATTATTTGAACTTAAATGGTGTGGTTCTCATGTCATTCCACGATTGGCGAGAAGTTTGCTTTACTAACATAATTAGGGAGGTTGTAGAGTAGGAGAATGAAGTTTAAACTTTAAATATGTTTGATGAAAATGAATTTTTGTTTTTATAAGGAAATCCCACTAAACTAGACTTGTACGCATTGATATGAAAAGTAGAGGCAAATGGAGTCAAAGGTGAATCCCCAATCAGCAAAGGGAGATGAACTCTTATTTGGAGAACTTGGAGCAGAAAGTTATCTTCAACATTTAATGCTTAGCTTTGATTAGCCTCTCATCGTTTGCGTTCTCTTAAATTGAAGTGATTATTGAGATCAATCATTGATAGATAGTTGAGACCATTTATCATTGCGGGTTACTTGGCTTAAGCTATTTTAAATTGACTCTGCTTTGTCTTGACCTTACAGGGTGGGGTTTATGTAGTAAAATCTTATTTAGATGTTGCAGAAAGAATGTTAACTGGTAGTTGATAGTTCTATAAGTTTCTGTTGTCGCCAAACTGTTTTGAAGATGGGGTAGATTCTACCTAGGTGGGTAGTGGGTATATGATTGAGAAGCAAAATTGCTCTCGTCCATAGGCTCTACAGCTTGCAAATGAAAGCCTCACATGTGCCAAGATATTACAGAGTGAAAAAGTAAGTACAAGAGAGAGGAACACCAACGAATTTCACTATTGATCTTCATGTATTCATCTTAAAGAAAACGGATAATAAAATGGACTGGGCAACTATTGGAGACTAATGAATTGTCAATTGTTTTGGAAGACATGTTTTTTCTGCTTTTGAAAGTGTAGGATTTTGAAGAGTGTCTGATATATCGTTACTTGATTGAATGCTTCTTTGAATTTTGAGCTAGATGTTTTCTGGACCTTACTTTTATCTATCATCAGTAATAATTGGTTAGTTGTGCCTCTGGGAAACAGTTTTTCGACAGTGTCTTCTCCCACTGTCTTGGTTTTCCGTATTGTGATTTCTGATTTCAATCCACCTGCAGGTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAATCAAGAAA</genome_strand>
        <mrna_strand>ATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG..............................................................................CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAATCAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244002" ref_strand="-" ref_description="SGN-E244002 [cLEE-1-O11]">
      <seq>agtttgtaaggataccttttggccgattgttgaagccgccggtgaaaaaaccgttgtagttgacatgtatacacagtggtgtggtccttgtaaagtgattgctccaaagtttcaagagctatcaaagaaatataacgatgtggtctttctgaagctggactgtaaccaggacaacaggccactagcaaaggaactaggcataaaggtggttccaacattcaagattctgaagaacaataagatcgttaaagaagtccccggagcaaaacttgatgatttagtagcagcaattgagggtgtgcgatcaagttaaaaatttcttctttttttttttctatgacttcttctgtttaaatatgaagcagataatgtctatgaatgtcgtaaattagttctaactaaattcagtgtacagccgtggataatgaagtctcattagagaaaatggatgtgatgtacttgtcttgccaatgcttttattttactatggagagtaatccaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="38577" stop="35740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38277" g_stop="38200" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38199" i_stop="36544" i_length="1656">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36543" g_stop="36444" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="178" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36365" g_stop="36040" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="505" r_length="327" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="533"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E244002" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244002" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38277" e_stop="38200"/>
          <exon e_start="36543" e_stop="36444"/>
          <exon e_start="36365" e_stop="36040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTGGTAAAATTACATATACTTTCTATTTCCTTTTAGATTTGATGAATTTAGTGCTTAATTATGACTATTACTAGTATAAATCACTGCTAATTTTGTTTTATCCTTTCTCTCAAGTCCTTTTTAGCGTAATCCTGATAAAAGATGAGGAGGATTGGCGTAATTTGATAGTTAAGGTAATTATAATCATGATTATGACAATTAACATATAAAGGTGAGTCTTACTGGTCAATGAAGCTCGAAATGAACTATCTTGGTTGAACAAGGTTCGAAGTATAAGATATTTGAGGTCCGAGTAAACTGAGCTGCACACTACTTCTGTATAATAAAGAGGAAAAGAAACTAAGATGAATTCTGTGAATACTGCAACAGAGTTCTATTCGTTTTCCTGAACAGAATATAATAGATGATGAGTCCATAGACTGGAACAGAATGGATTAAGAGGATTCATATAGCTGACTCTAATTCATTTGTGATTGATGTGTGCTAGATGATTGGCAGAATCCTTATCTTATTAGGAGGAAGGAGGTTTCCGAGTGAACAACCAGATACTTACGAGAGATCATTTGAACTAAAAAGATCTGGTTTTCATGTCATTCCATAATGGAAAACTAATTGGATGTGTAAGAGGAAATTATTTGAACTTAAATGGTGTGGTTCTCATGTCATTCCACGATTGGCGAGAAGTTTGCTTTACTAACATAATTAGGGAGGTTGTAGAGTAGGAGAATGAAGTTTAAACTTTAAATATGTTTGATGAAAATGAATTTTTGTTTTTATAAGGAAATCCCACTAAACTAGACTTGTACGCATTGATATGAAAAGTAGAGGCAAATGGAGTCAAAGGTGAATCCCCAATCAGCAAAGGGAGATGAACTCTTATTTGGAGAACTTGGAGCAGAAAGTTATCTTCAACATTTAATGCTTAGCTTTGATTAGCCTCTCATCGTTTGCGTTCTCTTAAATTGAAGTGATTATTGAGATCAATCATTGATAGATAGTTGAGACCATTTATCATTGCGGGTTACTTGGCTTAAGCTATTTTAAATTGACTCTGCTTTGTCTTGACCTTACAGGGTGGGGTTTATGTAGTAAAATCTTATTTAGATGTTGCAGAAAGAATGTTAACTGGTAGTTGATAGTTCTATAAGTTTCTGTTGTCGCCAAACTGTTTTGAAGATGGGGTAGATTCTACCTAGGTGGGTAGTGGGTATATGATTGAGAAGCAAAATTGCTCTCGTCCATAGGCTCTACAGCTTGCAAATGAAAGCCTCACATGTGCCAAGATATTACAGAGTGAAAAAGTAAGTACAAGAGAGAGGAACACCAACGAATTTCACTATTGATCTTCATGTATTCATCTTAAAGAAAACGGATAATAAAATGGACTGGGCAACTATTGGAGACTAATGAATTGTCAATTGTTTTGGAAGACATGTTTTTTCTGCTTTTGAAAGTGTAGGATTTTGAAGAGTGTCTGATATATCGTTACTTGATTGAATGCTTCTTTGAATTTTGAGCTAGATGTTTTCTGGACCTTACTTTTATCTATCATCAGTAATAATTGGTTAGTTGTGCCTCTGGGAAACAGTTTTTCGACAGTGTCTTCTCCCACTGTCTTGGTTTTCCGTATTGTGATTTCTGATTTCAATCCACCTGCAGGTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTT-TTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAATCAAGAAA</genome_strand>
        <mrna_strand>AGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG..............................................................................CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCCCCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAAAATTTCTTCTTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTACAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGCTTTTATTTTACTATGGAGAGTAATCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244003" ref_strand="-" ref_description="SGN-E244003 [cLEE-1-O11](-)">
      <seq>tggcttctagtctagggttttgaggaacagaggattgagcttgagggtgaagtgtagtagctcagatgctactgttactactacgactgtgacggtgggacaggtgacggaagtttgtaaggataccttttggccgattgttgaagccgccggtgaaaaaaccgttgtagttgacatgtatacacagtggtgtggtccttgtaaagtgattgctccaaagtttcaagagctatcaaagaaatataacgatgtggtctttctgaagctggactgtaaccaggacaacaggccactagcaaaggaactaggcataaaggtggttccaacattcaagattctgaagaacaataagatcgttaaagaagtcaccggagcaaaacttgatgatttagtagcagcaattgagggtgtgcgatcaagttaaatatttcttctttttttttttctatgacttcttctgtttaaatatgaagcagataatgtctatgaatgtcgtaaattagttctaactaaattcagtgtatagccgtggataatgaagtctcattagagaaaatggatgtgatgtacttgtcttgccaatgtttttattttactatggagagtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="38688" stop="35747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38388" g_stop="38200" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38199" i_stop="36544" i_length="1656">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36543" g_stop="36444" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="289" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36365" g_stop="36047" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="609" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E244003" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244003" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38388" e_stop="38200"/>
          <exon e_start="36543" e_stop="36444"/>
          <exon e_start="36365" e_stop="36047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTGGTAAAATTACATATACTTTCTATTTCCTTTTAGATTTGATGAATTTAGTGCTTAATTATGACTATTACTAGTATAAATCACTGCTAATTTTGTTTTATCCTTTCTCTCAAGTCCTTTTTAGCGTAATCCTGATAAAAGATGAGGAGGATTGGCGTAATTTGATAGTTAAGGTAATTATAATCATGATTATGACAATTAACATATAAAGGTGAGTCTTACTGGTCAATGAAGCTCGAAATGAACTATCTTGGTTGAACAAGGTTCGAAGTATAAGATATTTGAGGTCCGAGTAAACTGAGCTGCACACTACTTCTGTATAATAAAGAGGAAAAGAAACTAAGATGAATTCTGTGAATACTGCAACAGAGTTCTATTCGTTTTCCTGAACAGAATATAATAGATGATGAGTCCATAGACTGGAACAGAATGGATTAAGAGGATTCATATAGCTGACTCTAATTCATTTGTGATTGATGTGTGCTAGATGATTGGCAGAATCCTTATCTTATTAGGAGGAAGGAGGTTTCCGAGTGAACAACCAGATACTTACGAGAGATCATTTGAACTAAAAAGATCTGGTTTTCATGTCATTCCATAATGGAAAACTAATTGGATGTGTAAGAGGAAATTATTTGAACTTAAATGGTGTGGTTCTCATGTCATTCCACGATTGGCGAGAAGTTTGCTTTACTAACATAATTAGGGAGGTTGTAGAGTAGGAGAATGAAGTTTAAACTTTAAATATGTTTGATGAAAATGAATTTTTGTTTTTATAAGGAAATCCCACTAAACTAGACTTGTACGCATTGATATGAAAAGTAGAGGCAAATGGAGTCAAAGGTGAATCCCCAATCAGCAAAGGGAGATGAACTCTTATTTGGAGAACTTGGAGCAGAAAGTTATCTTCAACATTTAATGCTTAGCTTTGATTAGCCTCTCATCGTTTGCGTTCTCTTAAATTGAAGTGATTATTGAGATCAATCATTGATAGATAGTTGAGACCATTTATCATTGCGGGTTACTTGGCTTAAGCTATTTTAAATTGACTCTGCTTTGTCTTGACCTTACAGGGTGGGGTTTATGTAGTAAAATCTTATTTAGATGTTGCAGAAAGAATGTTAACTGGTAGTTGATAGTTCTATAAGTTTCTGTTGTCGCCAAACTGTTTTGAAGATGGGGTAGATTCTACCTAGGTGGGTAGTGGGTATATGATTGAGAAGCAAAATTGCTCTCGTCCATAGGCTCTACAGCTTGCAAATGAAAGCCTCACATGTGCCAAGATATTACAGAGTGAAAAAGTAAGTACAAGAGAGAGGAACACCAACGAATTTCACTATTGATCTTCATGTATTCATCTTAAAGAAAACGGATAATAAAATGGACTGGGCAACTATTGGAGACTAATGAATTGTCAATTGTTTTGGAAGACATGTTTTTTCTGCTTTTGAAAGTGTAGGATTTTGAAGAGTGTCTGATATATCGTTACTTGATTGAATGCTTCTTTGAATTTTGAGCTAGATGTTTTCTGGACCTTACTTTTATCTATCATCAGTAATAATTGGTTAGTTGTGCCTCTGGGAAACAGTTTTTCGACAGTGTCTTCTCCCACTGTCTTGGTTTTCCGTATTGTGATTTCTGATTTCAATCCACCTGCAGGTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTC-TTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAAT</genome_strand>
        <mrna_strand>TGGCTTCTAGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG..............................................................................CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291088" ref_strand="+" ref_description="SGN-E291088 [cLET-8-C14]">
      <seq>tgctgcaagcttgtaaagtgattgagagacacaattacgagctagcaatgaaatataacgatgtggtctttctgaagctggactgtaaccaggacaacaggccactagcaaaggaactaggcataaaggtggttccaacattcaagattctgaagaacaataagatcgttaaagaagtcaccggagcaaaacttgatgatttagtagcagcaattgagggtgtgcgatcaagttaaatatttcttcttttttttttctatgacttcttctgtttaaatatgaagcagataatgtctatgaatgtcgtaaattagttctaactaaattcagtgtatagccgtggataatgaagtctcattagagaaaatggatgtgatgtacttggcttgccaatgtttttatttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="36811" stop="35761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36724" g_stop="36724" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36723" i_stop="36544" i_length="180">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36543" g_stop="36444" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="101" r_length="100" r_score="0.810"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36365" g_stop="36057" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="410" r_length="309" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E291088" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36724" e_stop="36724"/>
          <exon e_start="36543" e_stop="36444"/>
          <exon e_start="36365" e_stop="36057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATCGTTACTTGATTGAATGCTTCTTTGAATTTTGAGCTAGATGTTTTCTGGACCTTACTTTTATCTATCATCAGTAATAATTGGTTAGTTGTGCCTCTGGGAAACAGTTTTTCGACAGTGTCTTCTCCCACTGTCTTGGTTTTCCGTATTGTGATTTCTGATTTCAATCCACCTGCAGGTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTAT</genome_strand>
        <mrna_strand>T....................................................................................................................................................................................GCTGCAAGCTTGTAAAGTGATTGAGAGACACAATTACGAGCTAGCAATGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG..............................................................................CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGGCTTGCCAATGTTTTTATTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735244" ref_strand="+" ref_description="SGN-E735244 [LB14DC08]">
      <seq>ctctctctacctatacatacagagctatacgtatagattgataatagcaaaaatggcgttacaagttcaagtaaatcaggtaccattgaagtcatcaatggcgccggtgccggcgcagtcagcatcttcttcgtggaggttcaacaaacagtcagtggtatgcgttgcaggagattatggcttctcgtctagggttttgaggaacagaggattgagcttgagggtgaagtgtagtagctcagatgctactgttactactacgactgtgacggtgggacaggtgacggaagtttgtaaggataccttttggccgattgttgaagccgccggtgaaaaaaccgttgtagttgacatgtatacacagtggtgtggtccttgtaaagtgattgctccaaagtttcaagagctatcaaagaaatataacgatgtggtctttctgaagctggactgtaaccaggacaacaggccactagcaaaggaactaggcataaaggtggttccaacattcaagattctgaagaacaataagatcgttaaagaagtcaccggagcaaaacttgatgatttagtagcagcaattgagggtgtgcgatcaagttaaatatttcttctttttttttctatgacttcttctgtttaaatatgaagcagataatgtctatgaatgtcgtaaattagttctaactaaattcagtgtatagccgtggataatgaagtctcattagagaaaatggatgtgatgtacttgtcttgccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="38865" stop="35774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38565" g_stop="38200" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38199" i_stop="36544" i_length="1656">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36543" g_stop="36444" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="466" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36365" g_stop="36075" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="756" r_length="290" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="757" polyA_stop="769"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E735244" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38565" e_stop="38200"/>
          <exon e_start="36543" e_stop="36444"/>
          <exon e_start="36365" e_stop="36075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTACCTATACATACAGAGCTATACGTATAGATTGATAATAGCAAAAATGGCGTTACAAGTTCAAGTAAATCAGGTACCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAGTCAGCATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTGGTAAAATTACATATACTTTCTATTTCCTTTTAGATTTGATGAATTTAGTGCTTAATTATGACTATTACTAGTATAAATCACTGCTAATTTTGTTTTATCCTTTCTCTCAAGTCCTTTTTAGCGTAATCCTGATAAAAGATGAGGAGGATTGGCGTAATTTGATAGTTAAGGTAATTATAATCATGATTATGACAATTAACATATAAAGGTGAGTCTTACTGGTCAATGAAGCTCGAAATGAACTATCTTGGTTGAACAAGGTTCGAAGTATAAGATATTTGAGGTCCGAGTAAACTGAGCTGCACACTACTTCTGTATAATAAAGAGGAAAAGAAACTAAGATGAATTCTGTGAATACTGCAACAGAGTTCTATTCGTTTTCCTGAACAGAATATAATAGATGATGAGTCCATAGACTGGAACAGAATGGATTAAGAGGATTCATATAGCTGACTCTAATTCATTTGTGATTGATGTGTGCTAGATGATTGGCAGAATCCTTATCTTATTAGGAGGAAGGAGGTTTCCGAGTGAACAACCAGATACTTACGAGAGATCATTTGAACTAAAAAGATCTGGTTTTCATGTCATTCCATAATGGAAAACTAATTGGATGTGTAAGAGGAAATTATTTGAACTTAAATGGTGTGGTTCTCATGTCATTCCACGATTGGCGAGAAGTTTGCTTTACTAACATAATTAGGGAGGTTGTAGAGTAGGAGAATGAAGTTTAAACTTTAAATATGTTTGATGAAAATGAATTTTTGTTTTTATAAGGAAATCCCACTAAACTAGACTTGTACGCATTGATATGAAAAGTAGAGGCAAATGGAGTCAAAGGTGAATCCCCAATCAGCAAAGGGAGATGAACTCTTATTTGGAGAACTTGGAGCAGAAAGTTATCTTCAACATTTAATGCTTAGCTTTGATTAGCCTCTCATCGTTTGCGTTCTCTTAAATTGAAGTGATTATTGAGATCAATCATTGATAGATAGTTGAGACCATTTATCATTGCGGGTTACTTGGCTTAAGCTATTTTAAATTGACTCTGCTTTGTCTTGACCTTACAGGGTGGGGTTTATGTAGTAAAATCTTATTTAGATGTTGCAGAAAGAATGTTAACTGGTAGTTGATAGTTCTATAAGTTTCTGTTGTCGCCAAACTGTTTTGAAGATGGGGTAGATTCTACCTAGGTGGGTAGTGGGTATATGATTGAGAAGCAAAATTGCTCTCGTCCATAGGCTCTACAGCTTGCAAATGAAAGCCTCACATGTGCCAAGATATTACAGAGTGAAAAAGTAAGTACAAGAGAGAGGAACACCAACGAATTTCACTATTGATCTTCATGTATTCATCTTAAAGAAAACGGATAATAAAATGGACTGGGCAACTATTGGAGACTAATGAATTGTCAATTGTTTTGGAAGACATGTTTTTTCTGCTTTTGAAAGTGTAGGATTTTGAAGAGTGTCTGATATATCGTTACTTGATTGAATGCTTCTTTGAATTTTGAGCTAGATGTTTTCTGGACCTTACTTTTATCTATCATCAGTAATAATTGGTTAGTTGTGCCTCTGGGAAACAGTTTTTCGACAGTGTCTTCTCCCACTGTCTTGGTTTTCCGTATTGTGATTTCTGATTTCAATCCACCTGCAGGTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCA</genome_strand>
        <mrna_strand>CTCTCTCTACCTATACATACAGAGCTATACGTATAGATTGATAATAGCAAAAATGGCGTTACAAGTTCAAGTAAATCAGGTACCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAGTCAGCATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG..............................................................................CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTC-TTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734396" ref_strand="+" ref_description="SGN-E734396 [LB12CC04]">
      <seq>cctcgtgccgagtaaatcaggtaccattgaagtcatcaatggcgccggtgccggcgcagtcagcatcttcttcgtggaggttcaacaaacagtcagtggtatgcgttgcaggagattatggcttctcgtctagggttttgaggaacagaggattgagcttgagggtgaagtgtagtagctcagatgctactgttactactacgactgtgacggtgggacaggtgacggaagtttgtaaggataccttttggccgattgttgaagccgccggtgaaaaaaccgttgtagttgacatgtatacacagtggtgtggtccttgtaaagtgattgctccaaagtttcaagagctatcaaagaaatataacgatgtggtctttctgaagctggactgtaaccaggacaacaggccactagcaaaggaactaggcataaaggtggttccaacattcaagattctgaagaacaataagatcgttaaagaagtcaccggagcaaaacttgatgatttagtagcagcaattgagggtgtgcgatcaagttaaatatttcttcttttttttttctatgacttcttctgtttaaatatgaagcagataatgtctatgaatgtcgtaaattagttctaactaaattcagtgtatagccgtggataatgaagtctcattagagaaaatggatgtgatgtacttgtcttgccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="38798" stop="35774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38494" g_stop="38200" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="307" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38199" i_stop="36544" i_length="1656">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36543" g_stop="36444" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="407" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36365" g_stop="36075" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="698" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="716"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E734396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38494" e_stop="38200"/>
          <exon e_start="36543" e_stop="36444"/>
          <exon e_start="36365" e_stop="36075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCAGGTACCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAGTCAGCATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTGGTAAAATTACATATACTTTCTATTTCCTTTTAGATTTGATGAATTTAGTGCTTAATTATGACTATTACTAGTATAAATCACTGCTAATTTTGTTTTATCCTTTCTCTCAAGTCCTTTTTAGCGTAATCCTGATAAAAGATGAGGAGGATTGGCGTAATTTGATAGTTAAGGTAATTATAATCATGATTATGACAATTAACATATAAAGGTGAGTCTTACTGGTCAATGAAGCTCGAAATGAACTATCTTGGTTGAACAAGGTTCGAAGTATAAGATATTTGAGGTCCGAGTAAACTGAGCTGCACACTACTTCTGTATAATAAAGAGGAAAAGAAACTAAGATGAATTCTGTGAATACTGCAACAGAGTTCTATTCGTTTTCCTGAACAGAATATAATAGATGATGAGTCCATAGACTGGAACAGAATGGATTAAGAGGATTCATATAGCTGACTCTAATTCATTTGTGATTGATGTGTGCTAGATGATTGGCAGAATCCTTATCTTATTAGGAGGAAGGAGGTTTCCGAGTGAACAACCAGATACTTACGAGAGATCATTTGAACTAAAAAGATCTGGTTTTCATGTCATTCCATAATGGAAAACTAATTGGATGTGTAAGAGGAAATTATTTGAACTTAAATGGTGTGGTTCTCATGTCATTCCACGATTGGCGAGAAGTTTGCTTTACTAACATAATTAGGGAGGTTGTAGAGTAGGAGAATGAAGTTTAAACTTTAAATATGTTTGATGAAAATGAATTTTTGTTTTTATAAGGAAATCCCACTAAACTAGACTTGTACGCATTGATATGAAAAGTAGAGGCAAATGGAGTCAAAGGTGAATCCCCAATCAGCAAAGGGAGATGAACTCTTATTTGGAGAACTTGGAGCAGAAAGTTATCTTCAACATTTAATGCTTAGCTTTGATTAGCCTCTCATCGTTTGCGTTCTCTTAAATTGAAGTGATTATTGAGATCAATCATTGATAGATAGTTGAGACCATTTATCATTGCGGGTTACTTGGCTTAAGCTATTTTAAATTGACTCTGCTTTGTCTTGACCTTACAGGGTGGGGTTTATGTAGTAAAATCTTATTTAGATGTTGCAGAAAGAATGTTAACTGGTAGTTGATAGTTCTATAAGTTTCTGTTGTCGCCAAACTGTTTTGAAGATGGGGTAGATTCTACCTAGGTGGGTAGTGGGTATATGATTGAGAAGCAAAATTGCTCTCGTCCATAGGCTCTACAGCTTGCAAATGAAAGCCTCACATGTGCCAAGATATTACAGAGTGAAAAAGTAAGTACAAGAGAGAGGAACACCAACGAATTTCACTATTGATCTTCATGTATTCATCTTAAAGAAAACGGATAATAAAATGGACTGGGCAACTATTGGAGACTAATGAATTGTCAATTGTTTTGGAAGACATGTTTTTTCTGCTTTTGAAAGTGTAGGATTTTGAAGAGTGTCTGATATATCGTTACTTGATTGAATGCTTCTTTGAATTTTGAGCTAGATGTTTTCTGGACCTTACTTTTATCTATCATCAGTAATAATTGGTTAGTTGTGCCTCTGGGAAACAGTTTTTCGACAGTGTCTTCTCCCACTGTCTTGGTTTTCCGTATTGTGATTTCTGATTTCAATCCACCTGCAGGTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCA</genome_strand>
        <mrna_strand>TAAATCAGGTACCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAGTCAGCATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG..............................................................................CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272532" ref_strand="+" ref_description="SGN-E272532 [cLEM-21-A22]">
      <seq>ccattgaagtcatcaatggcgccggtgccggcgcaatcaacatcttcttcgtggaggttcaacaaacagtcagtggtatgcgttgcaggagattatggcttctcgtctagggttttgaggaacagaggattgagcttgagggtgaagtgtagtagctcagatgctactgttactactacgactgtgacggtgggacaggtgacggaagtttgtaaggataccttttggccgattgttgaagccgccggtgaaaaaaccgttgtagttgacatgtatacacagtggtgtggtccttgtaaagtgattgctccaaagtttcaagagctatcaaagaaatataacgatgtggtctttctgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="38783" stop="36166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38483" g_stop="38200" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38199" i_stop="36544" i_length="1656">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36543" g_stop="36466" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="362" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E272532" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38483" e_stop="38200"/>
          <exon e_start="36543" e_stop="36466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAGTCAGCATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTGGTAAAATTACATATACTTTCTATTTCCTTTTAGATTTGATGAATTTAGTGCTTAATTATGACTATTACTAGTATAAATCACTGCTAATTTTGTTTTATCCTTTCTCTCAAGTCCTTTTTAGCGTAATCCTGATAAAAGATGAGGAGGATTGGCGTAATTTGATAGTTAAGGTAATTATAATCATGATTATGACAATTAACATATAAAGGTGAGTCTTACTGGTCAATGAAGCTCGAAATGAACTATCTTGGTTGAACAAGGTTCGAAGTATAAGATATTTGAGGTCCGAGTAAACTGAGCTGCACACTACTTCTGTATAATAAAGAGGAAAAGAAACTAAGATGAATTCTGTGAATACTGCAACAGAGTTCTATTCGTTTTCCTGAACAGAATATAATAGATGATGAGTCCATAGACTGGAACAGAATGGATTAAGAGGATTCATATAGCTGACTCTAATTCATTTGTGATTGATGTGTGCTAGATGATTGGCAGAATCCTTATCTTATTAGGAGGAAGGAGGTTTCCGAGTGAACAACCAGATACTTACGAGAGATCATTTGAACTAAAAAGATCTGGTTTTCATGTCATTCCATAATGGAAAACTAATTGGATGTGTAAGAGGAAATTATTTGAACTTAAATGGTGTGGTTCTCATGTCATTCCACGATTGGCGAGAAGTTTGCTTTACTAACATAATTAGGGAGGTTGTAGAGTAGGAGAATGAAGTTTAAACTTTAAATATGTTTGATGAAAATGAATTTTTGTTTTTATAAGGAAATCCCACTAAACTAGACTTGTACGCATTGATATGAAAAGTAGAGGCAAATGGAGTCAAAGGTGAATCCCCAATCAGCAAAGGGAGATGAACTCTTATTTGGAGAACTTGGAGCAGAAAGTTATCTTCAACATTTAATGCTTAGCTTTGATTAGCCTCTCATCGTTTGCGTTCTCTTAAATTGAAGTGATTATTGAGATCAATCATTGATAGATAGTTGAGACCATTTATCATTGCGGGTTACTTGGCTTAAGCTATTTTAAATTGACTCTGCTTTGTCTTGACCTTACAGGGTGGGGTTTATGTAGTAAAATCTTATTTAGATGTTGCAGAAAGAATGTTAACTGGTAGTTGATAGTTCTATAAGTTTCTGTTGTCGCCAAACTGTTTTGAAGATGGGGTAGATTCTACCTAGGTGGGTAGTGGGTATATGATTGAGAAGCAAAATTGCTCTCGTCCATAGGCTCTACAGCTTGCAAATGAAAGCCTCACATGTGCCAAGATATTACAGAGTGAAAAAGTAAGTACAAGAGAGAGGAACACCAACGAATTTCACTATTGATCTTCATGTATTCATCTTAAAGAAAACGGATAATAAAATGGACTGGGCAACTATTGGAGACTAATGAATTGTCAATTGTTTTGGAAGACATGTTTTTTCTGCTTTTGAAAGTGTAGGATTTTGAAGAGTGTCTGATATATCGTTACTTGATTGAATGCTTCTTTGAATTTTGAGCTAGATGTTTTCTGGACCTTACTTTTATCTATCATCAGTAATAATTGGTTAGTTGTGCCTCTGGGAAACAGTTTTTCGACAGTGTCTTCTCCCACTGTCTTGGTTTTCCGTATTGTGATTTCTGATTTCAATCCACCTGCAGGTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCT</genome_strand>
        <mrna_strand>CCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAATCAACATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320671" ref_strand="+" ref_description="SGN-E320671 [cTOB-27-A16]">
      <seq>tgaagtgttctctctgccctaacccacccccctcttgcgaaccccacaatctacgaagaatctgatgttggtactggtgccggtctgtttgaagtgaaaaaaattggggatgagttctttacttttattgttgattgcaaggatccgaaagcatgtactatacttttaaggggtgcgagcaaagatctactgaatgaagtagaaagaaatctacaggatgccatgtctgtcgctagaaacatcatcaagtgtcctaagctagttcccggtggtggtgcaacagagttaactgtatctgccatgttaaagcagaaaagttcatccgttgaaggcatagaaaagtggccgtatgaagctgctgcaattgcttttgaagctataccacgaactttggctcagaactgtggtgttaatgtgattcgtactatgaccgctctttcaagaaagcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="39964" stop="47142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40264" g_stop="40321" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40322" i_stop="46234" i_length="5913">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46235" g_stop="46392" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="216" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46393" i_stop="46471" i_length="79">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46472" g_stop="46597" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="342" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46738" g_stop="46842" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="447" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46926" g_stop="46930" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="452" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E320671" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40264" e_stop="40321"/>
          <exon e_start="46235" e_stop="46392"/>
          <exon e_start="46472" e_stop="46597"/>
          <exon e_start="46738" e_stop="46842"/>
          <exon e_start="46926" e_stop="46930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTGTTCTCTCTGCCCTAACCCACCCCCCTCTTGCGAACCCCACAATCTACGAAGAACAGAAATCTCAACATTTCCATTCTAGGTCACCATTCAAATTAGCAAGATGCATGCTCCAGTTCTTGTTATGCGTAAGTTTTTTGTTTTTTTTCCCCCCTTTATTGGTCGTTTTCTCCACTTTTCCTTGTGTTTTTCGGATACCCATTTGCTTGTTTTACGTGAAAATGTGTCGAGTGGAGTAGAACGGATCTGGATGATTCATGTAGGGTGACCGGAACTAGTTTGGGATTGAGGTTTTAACTAGTTGATGGAGGGGAATTGAGAGATAGCGTTTATGTTAAGCCCAATCTTAACTTGTTGGGGTTTGAACTAATTGATTGATTGTCTCATTTTTGAAATGCTCGATCTGTTTGTGCAAGATGTAGTTTTCAGACATGGGTTGAGTAAGATGGGTTAAAGGGTGTTTGAGGATGTAGTAATTACTATGGTTTTGAGCTTTTCTGTTAGGGGTCGTTTGGTAGGGTGTACAAGAACAATGGTGAACAGAGTGTATAGCTAATGCTTGTATTAGTTATGCTAAGTTATTGCATATGTAGATATAGTTAGGGGTAGTTTGTTTGTCTTAGTTATGCTAAGTTATTTCATATGCTCAGCTTGGCTTGGTGTATTAAAAATAAGATGTGTTGCATGATTTCTAAAATAAATTATCTGTTTATATAAATACCCTCTACAAATATGGTAGACATGGAAAAGGTTTTGAGGGGAAATTTATCATGATAGTGCACACATTAAAGCCCTTGCATTGCTAATTCTGGATTTGTATGTACTAGTTATAGACAGGCTTAAAGAAATCTATCAAACATGGTATAAATGAATACAAAGCTAATGCATGTATTATTCTATCTGATGCATCCTTCCAAACGACCCCCTAGTCTTTTAGTTTCTAGGACCTATTTTATCAGTTGTTTTCATACAATGGTTGTATTGAGCAGAGGATTCTATGAAACGTGAGCAAGGTGGCAAGGTACGACGGGTAAATATCCAACTTAGTTATGTTAAGTTATTGAATATGCAGATTTTGATTAGGGGTAGTTTGGTAGGGTGTACAAGAACAGTGTTGAATATAGTGTATTAGTAATGTTTGTATTAGTTAGGCTAAGTTATTTCATATGCACAGTTTGGTTTGGTGTATTAAAAATGAGATGCTTTGCGTAATTTCTTAAAATAATTATTTGTTTATATAAATACCGTGCACAAATATGGTAGATGTGGAAAAGGTTTTGAGGGGAAATTTACCATGATAGTGCAAAGCATAAAACCCTTGCATAGTTCTATGATTTGTATGTACTAGTTATATATAAGCTTAAAGAATTGTACCAAACAAGGTATAAATAATAAACAAAGCTAATGCATGTACTATTCTATATGATGTGTCCTGCCAAACGACCCCTTAGTGTTTTAGTTTCTAGGACCCATTTTTTTAGTTGTTTTCTTACAATGGTTGTATTGAGCAGAGGATTCTATGAAACGCGAGCAAGGTGGCAAGGTTCAGCGGGCGAATATTCAGGCGGCAAAGGTACTTATTTGTCCCTTTTTTGGGTCTATTCTTAGAATAATAAGAGAACTCATAAATAGTTTGTATTTTTTTAAATATGTTTACTGGTATACTTGTTTTTTACTAGCTGTTAAATGGCATGTTTATTGTGAACTTCTAATTTATTCGTCGGACATCTAGATGAAGGATGATATTGTTGATCCTCTTGGAATTGCTACATTTTTGTGCCCACTAGTTTGAGTTCCTGCTGTTTCCTGCTATGCATTTATGGATCATTCACTTGCGTATTCAACCATGCTAAATTGGACTTGACTTAGCTGGTTGCTTTGTTGATATTATTCTTTGTCGTGGCTTTTGTCAGTAAAACTGCATAATGTGGTTATACACAGGTTGCACTAAAATGCACGTTGACTGGTGTTCCTGAAAATGATTACTGAGTTGAATATGTTCTTATATTGGGTCCTATTCTCATTATGTTGTCTAAGCAATCCTGCAAGCATTGCTATTGATAATTTTCCTTGGGGAGTATTAACATTATGCAAGAATGAATGCGATCCTTATAAAACACCAAGAACGATTGAGAATTTGTAGAAATCTTAGCCGTATTTTGGATGCTCTAGCAGTTTGAGGAGGCAAGTCTATTTGCTAGTTCAAGTGTCTTCAAGGCATTTCTTTGATTTGTTGCTCTCAACCTAAAACAAAAAACTGCATGGAAAGTTAAGCTAGAAACAGAATACATTGGACGAATAAGGGATTTGAATCCCTCTTATTGGGGTTCAGATCTGAGCAGAGGCAAAAAACTAGGTGACTTTTTTTCCATTTGTCCAAGGGAAGAGTCACCCAATACTTGTGCGGGTGGGAAGTAGGGTAGGGTATATTTGAGGCGAGGGCAAGCTTGTCTGGATACCACCCTCATAACAAAATAAAGTGGGAATGAGGAATCATATATTTCTCTGTATTTTCTCAGAATTTATAATTGTTTGTTACAGCTCATGTTAGTACGTATGTTAGTTCTCTTATGTTCTGTTTTGTTTCCAGGCTGTTGCTGACATTATCCGTACCACTTTGGGACCACGATCCATGTTAAAAATGCTCCTTGATGCTGCTGGAGGTAAACTATTCTGTACACATGTGAAACATGTCATGAGCGTATCCTCTTTCTTGGTAATTTTGGTGAAATTCATGAATGTTAATGAATAATTTCAGGAATTGTAGTAACCAATGATGGAAATGCAATTCTCCGTGAGCTAGATCTTGCTCATCCTGCAGCCAAGGTATATGCTTTCTCTCTCTCTCTCTCTCTCTCTCTGCTGACCCCTAGACATCTATGTTTGTGTGTGTTCCCTTGTTTGTTCATGGATTTTGTTTTGGTTGTGTTAATGTTTGATTACATGCCATGTTCTAATGAATATGTTTGTGCTCACATTGTTGTGTGCTTGCTTTCTTGTTTAAGCTTTCATATTGGTTATATCTTTCTGCTGCTGCAGTCAATGATTGAACTAAGCCGCACCCAAGATGAAGAGGTAGGAGACGGAACAACATCAGTAATTGTCCTTGGTATGGCTCTATTTAATTTTTTTGCATTAGGTGGATGGATTTTATCAGTTAAATTGTTGTCATGGAACTCATTAACTCACTCGCTCTTTATCTTAGGTATCTAACTGTTAATTGTGTAATCAATTGATACATATTGTCTAGCTGTTAATTGTTTGTGGGGTGTTCAGTAGTCTTAAGTTTCAGTTTTGCCTAAATTCTCTAGAAGGGCAGCCACTAGATTCCATGAAATGAACAGGCAAACACTTTAATAGAGCTCGGTCTGTAAGTATTTGGGATTTCATTTCAGTTTCACTATAGCAAAGTCCTTCCCCTAATTTAAATTTATTTGAAAAAGCATTTTACTTGATTCAAAACTCAAAACAGAGGATACAAATAAGAACATCAATGAGAAATGTAGGAGGAGCAGAAGGAGGAAGTCTGAGGCACACTGGAAGACAACCAAAAACCACGCCTATGTTTGATTGATGTGGACCGAGGCAGTTAGAGAGGAAGGTTATGGGCTAGAAATCTACCCTCATCACTTGCAAATAAAAACAAGGGGGTGGGGGTTAGAGAGGAAGTACGAGAAGAGGGACAGAGGCTCTTGTCTATTTTTTGAAGTTAAGCTGAACCAAATTTGTTTCAATGCCTCTAAAGTGAGACAAGGGGTGAATTGTTTTCAAGTTAATAAAAAATGTGTGCTATTCTGGCACGATAGTATGATGAGAAGTGTATAAAAGATCTCTAAGCTGGCTGCTTAGTTCTTCAATATTAATTATGTTACCAATATTTTTGAAGCTGGTGAGATGCTCCATGTTGCGGAAGCTTTTATTGACAAGAAGTATCATCCTACAGTAATATGTAGAGGTAACAGACGAGCCTTAGAATTTTATATCCTTCCGCCGAAGTTCTCTGAATTTAATATATGTACTTCTGTGACCAGCTTATGCCAAAGCTCTTGAAGATGCTGTTGCCGTGCTTGACAAAATTGCAATGACAGTTGATGTTGAAGATCGTAAGTTCCCTCTGCTTCTTACATTTCTGTCTTCTCATAACTCCACTATGAGTACTTCTATATTTTAGTAGTTCCATGCCTGGAGGTATTAGATAAATATAAAACACCTAGAGTTTTGGATGTCTTCTGTAGAACTTTTGGAGGTGCTTTTGGATAACTAGTTGAGTTTGCTATATGTTTTTAGTGTGGAAGAGAACATAATTTTGTGTGGTTGCTGGAATTGCAATTGCTAGGTCTTGATATGGGGTTGTAAGCAGAGAAACAGCATCATTATTTAAATAAATTCTTGAAATAACTTTTTGTTATGAACATCGAATTGAGTATATGGGAGTTACACATTTAACTAATTTTTGTGCTTTTCGTTTAACTTGATCCTTCTATCTTGGGTTTTGATTTTCTCATCGCTCCTTGCTCTTTTTCAAGTTTTAATTTTTTCGTGCTTATTTTTTACAGGAATAGATTTTATGCTATTATTGTAGCGTATATACGTTTTCTGAATGATTTTAACATGCATTATTACTCAAAATAATTGCTAACTGTGGCAGGTGAAACAATGTTGGGTTTGGTTAAGAGTTGCATCGGCACAAAATTTACTAGTCAATTTGGGGATTTAATTTCAGTAAGTACAATTTATTTCTATTACGCCCCACCCCCACCCCTACCCTCAAAGTGACATGAAATAAATTAAGAAACTTACATCTGGAGGTATTTGGAGCGAAAAAATAAATTGTTTCTTAATTTCGGATAGATGGCCTCTTCTTGAAGGTATGTACTATGTCTAACCTACAAGTGGGAATAACAGAAAGCAATCAAAGCATAATCTATATTTGTGCCTTGATATCTCATGAGTTCTATTACCTCACATCAAATGTTTTGAACATCAAGAAAGAAGACATGGATACATGACTCTTTTTTCCTCGAAAAGGGTAAATAATTAATTGTAAAGAAGCACATGCATACAGACTAGTTAACTACTAATGTTTCTTATGATTTTCTTCTAGTCATATAGATACTTGGTTCTTGTATTTCTTTCCATAGTGTGTTATTTATAATGACTTAAGAAGTTACTTCCCACAACTTGATTGATACTTTTGGGATTGAGATATAGTTCTCGGGATTTGTGTGTGTGTGTGTGTGTATTTTATGGAGCAACGTAAGGTGATGGAAATTCCATCTCTGATCTCTTGGTTCCAGCACCTCGACTTTGGTTTGGTAACCATGAGATCAGGTCTATACCAGGCAACTGGTTGATTGATATATGGATTTCAAATTAAAGAAGTCTTCCTTCAAGAAGTCCTTTACTGCAATAGGATTGAATAGTTCATGTTTTCAGTGTTCATTGTCTGACTTTATCATCAGGATTTAGCAATTGATGCCACAAGAATGGTTGGTGTGGAACTTGGCCAAGGGTTACGCGAGGTGGACATCAAGAAGTACATCAAGATTGAGAAGGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAGGTATCTCCTCAATTCCATAGGTTTAGCAGATGATAGCTATAAATCACACTATTTTGAGCTGCTCCTTGTGCTTTTTCAGGATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAGGTAAGTAAAGTTCGTCAAGTTATTACTCTTTATTTGCAGATTGAAACAAGTCACGAATATATGATCTTCTGAGACTCTTTGTGGAAATTGAAAAAAAGCCAACGGATGCTAATACTTTCATCCTTCTATCATATATGCAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGC</genome_strand>
        <mrna_strand>TGAAGTGTTCTCTCTGCCCTAACCCACCCCCCTCTTGCGAACCCCACAATCTACGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAG...............................................................................GATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAG............................................................................................................................................TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTTAATGTGATTCGTACTATGACCGCTCTTTCAAGAAAG...................................................................................CATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697228" ref_strand="+" ref_description="SGN-E697228 [FA01AG07]">
      <seq>catcctacagtaatatgtagagcttatgccaaagctcttgaagatgctgttgccgtgcttgacaaaattgcaatgacagttgatgttgaagatcgtgaaacaatgttgggtttggttaagagttgcatcggcacaaaatttactagtcaatttggggatttaatttcagatttagcaattgatgccacaagaatggttggtgtggaacttggccaagggttacgcgaggtggacatcaagaagtacatcaagattgagaaggtgcctggtgggcagttggaagactctgtggtgcttaaaggagtaatgatgaacaaagatgtagttgcccctggcaaaatgaagagaaagattgtaaaccctcgcatcattctacttgattgtcccctagagtacaagaaaggtgagaaccaaacaaatgcagagctccttagagaggaggattggactgtcctcttgaaaatggaagaagagtacattgagaacatgtgcgcacagatacttaaattcaagcgggatgtggttattactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="43901" stop="46394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44201" g_stop="44222" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44223" i_stop="44298" i_length="76">
            <donor d_prob="0.281" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44299" g_stop="44370" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="94" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44371" i_stop="44915" i_length="545">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44916" g_stop="44989" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="168" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44990" i_stop="45729" i_length="740">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45730" g_stop="46094" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="533" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E697228" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44201" e_stop="44222"/>
          <exon e_start="44299" e_stop="44370"/>
          <exon e_start="44916" e_stop="44989"/>
          <exon e_start="45730" e_stop="46094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTACAGTAATATGTAGAGGTAACAGACGAGCCTTAGAATTTTATATCCTTCCGCCGAAGTTCTCTGAATTTAATATATGTACTTCTGTGACCAGCTTATGCCAAAGCTCTTGAAGATGCTGTTGCCGTGCTTGACAAAATTGCAATGACAGTTGATGTTGAAGATCGTAAGTTCCCTCTGCTTCTTACATTTCTGTCTTCTCATAACTCCACTATGAGTACTTCTATATTTTAGTAGTTCCATGCCTGGAGGTATTAGATAAATATAAAACACCTAGAGTTTTGGATGTCTTCTGTAGAACTTTTGGAGGTGCTTTTGGATAACTAGTTGAGTTTGCTATATGTTTTTAGTGTGGAAGAGAACATAATTTTGTGTGGTTGCTGGAATTGCAATTGCTAGGTCTTGATATGGGGTTGTAAGCAGAGAAACAGCATCATTATTTAAATAAATTCTTGAAATAACTTTTTGTTATGAACATCGAATTGAGTATATGGGAGTTACACATTTAACTAATTTTTGTGCTTTTCGTTTAACTTGATCCTTCTATCTTGGGTTTTGATTTTCTCATCGCTCCTTGCTCTTTTTCAAGTTTTAATTTTTTCGTGCTTATTTTTTACAGGAATAGATTTTATGCTATTATTGTAGCGTATATACGTTTTCTGAATGATTTTAACATGCATTATTACTCAAAATAATTGCTAACTGTGGCAGGTGAAACAATGTTGGGTTTGGTTAAGAGTTGCATCGGCACAAAATTTACTAGTCAATTTGGGGATTTAATTTCAGTAAGTACAATTTATTTCTATTACGCCCCACCCCCACCCCTACCCTCAAAGTGACATGAAATAAATTAAGAAACTTACATCTGGAGGTATTTGGAGCGAAAAAATAAATTGTTTCTTAATTTCGGATAGATGGCCTCTTCTTGAAGGTATGTACTATGTCTAACCTACAAGTGGGAATAACAGAAAGCAATCAAAGCATAATCTATATTTGTGCCTTGATATCTCATGAGTTCTATTACCTCACATCAAATGTTTTGAACATCAAGAAAGAAGACATGGATACATGACTCTTTTTTCCTCGAAAAGGGTAAATAATTAATTGTAAAGAAGCACATGCATACAGACTAGTTAACTACTAATGTTTCTTATGATTTTCTTCTAGTCATATAGATACTTGGTTCTTGTATTTCTTTCCATAGTGTGTTATTTATAATGACTTAAGAAGTTACTTCCCACAACTTGATTGATACTTTTGGGATTGAGATATAGTTCTCGGGATTTGTGTGTGTGTGTGTGTGTATTTTATGGAGCAACGTAAGGTGATGGAAATTCCATCTCTGATCTCTTGGTTCCAGCACCTCGACTTTGGTTTGGTAACCATGAGATCAGGTCTATACCAGGCAACTGGTTGATTGATATATGGATTTCAAATTAAAGAAGTCTTCCTTCAAGAAGTCCTTTACTGCAATAGGATTGAATAGTTCATGTTTTCAGTGTTCATTGTCTGACTTTATCATCAGGATTTAGCAATTGATGCCACAAGAATGGTTGGTGTGGAACTTGGCCAAGGGTTACGCGAGGTGGACATCAAGAAGTACATCAAGATTGAGAAGGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGA</genome_strand>
        <mrna_strand>CATCCTACAGTAATATGTAGAG............................................................................CTTATGCCAAAGCTCTTGAAGATGCTGTTGCCGTGCTTGACAAAATTGCAATGACAGTTGATGTTGAAGATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACAATGTTGGGTTTGGTTAAGAGTTGCATCGGCACAAAATTTACTAGTCAATTTGGGGATTTAATTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGCAATTGATGCCACAAGAATGGTTGGTGTGGAACTTGGCCAAGGGTTACGCGAGGTGGACATCAAGAAGTACATCAAGATTGAGAAGGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCGGGATGTGGTTATTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703695" ref_strand="+" ref_description="SGN-E703695 [FA22AH03]">
      <seq>agatgctgttgccgtgcttgacaaaattgcaatgacagttgatgttgaagatcgtgaaacaatgttgggtttggttaagagttgcatcggcacaaaatttactagtcaatttggggatttaatttcagatttagcaattgatgccacaagaatggttggtgtggaacttggccaagggttacgcgaggtggacatcaagaagtacatcaagattgagaaggtgcctggtgggcagttggaagactctgtggtgcttaaaggagtaatgatgaacaaagatgtagttgcccctggcaaaatgaagagaaagattgtaaaccctcgcatcattctacttgattgtcccctagagtacaagaaaggtgagaaccaaacaaatgcagagctccttagagaggaggattggactgtcctcttgaaaatggaagaagagtacattgagaacatgtgcgcacagatacttaaattcaagccggatgtggttattactgaaaagggactcagtgatctggcatgccattatctgtgcaaggctggtgtcagtgcaatcagaaggctaaggaagacagacaataacagaattgctaaggcatgtggggcagttattgttaatagacctgatgagttgcaagaatctgatgttggtactggtgccggtctgtttgaagtgaaaaaattggggatgagttctttacttttattgttgattgcaaggatccgaaagcatgtactatacttttaaggggtgcgagcaaagatctactgaatgaagtagaaagaaatctacaggatgccatgtctgtcgctagaaacatcatcaagtgtcctaagctagttcccggtggtggtgcaacagagttaactgtatctgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="44018" stop="46857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44318" g_stop="44370" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44371" i_stop="44915" i_length="545">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44916" g_stop="44989" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="127" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44990" i_stop="45729" i_length="740">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45730" g_stop="46392" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="789" r_length="662" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46393" i_stop="46471" i_length="79">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46472" g_stop="46557" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="875" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E703695" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44318" e_stop="44370"/>
          <exon e_start="44916" e_stop="44989"/>
          <exon e_start="45730" e_stop="46392"/>
          <exon e_start="46472" e_stop="46557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCTGTTGCCGTGCTTGACAAAATTGCAATGACAGTTGATGTTGAAGATCGTAAGTTCCCTCTGCTTCTTACATTTCTGTCTTCTCATAACTCCACTATGAGTACTTCTATATTTTAGTAGTTCCATGCCTGGAGGTATTAGATAAATATAAAACACCTAGAGTTTTGGATGTCTTCTGTAGAACTTTTGGAGGTGCTTTTGGATAACTAGTTGAGTTTGCTATATGTTTTTAGTGTGGAAGAGAACATAATTTTGTGTGGTTGCTGGAATTGCAATTGCTAGGTCTTGATATGGGGTTGTAAGCAGAGAAACAGCATCATTATTTAAATAAATTCTTGAAATAACTTTTTGTTATGAACATCGAATTGAGTATATGGGAGTTACACATTTAACTAATTTTTGTGCTTTTCGTTTAACTTGATCCTTCTATCTTGGGTTTTGATTTTCTCATCGCTCCTTGCTCTTTTTCAAGTTTTAATTTTTTCGTGCTTATTTTTTACAGGAATAGATTTTATGCTATTATTGTAGCGTATATACGTTTTCTGAATGATTTTAACATGCATTATTACTCAAAATAATTGCTAACTGTGGCAGGTGAAACAATGTTGGGTTTGGTTAAGAGTTGCATCGGCACAAAATTTACTAGTCAATTTGGGGATTTAATTTCAGTAAGTACAATTTATTTCTATTACGCCCCACCCCCACCCCTACCCTCAAAGTGACATGAAATAAATTAAGAAACTTACATCTGGAGGTATTTGGAGCGAAAAAATAAATTGTTTCTTAATTTCGGATAGATGGCCTCTTCTTGAAGGTATGTACTATGTCTAACCTACAAGTGGGAATAACAGAAAGCAATCAAAGCATAATCTATATTTGTGCCTTGATATCTCATGAGTTCTATTACCTCACATCAAATGTTTTGAACATCAAGAAAGAAGACATGGATACATGACTCTTTTTTCCTCGAAAAGGGTAAATAATTAATTGTAAAGAAGCACATGCATACAGACTAGTTAACTACTAATGTTTCTTATGATTTTCTTCTAGTCATATAGATACTTGGTTCTTGTATTTCTTTCCATAGTGTGTTATTTATAATGACTTAAGAAGTTACTTCCCACAACTTGATTGATACTTTTGGGATTGAGATATAGTTCTCGGGATTTGTGTGTGTGTGTGTGTGTATTTTATGGAGCAACGTAAGGTGATGGAAATTCCATCTCTGATCTCTTGGTTCCAGCACCTCGACTTTGGTTTGGTAACCATGAGATCAGGTCTATACCAGGCAACTGGTTGATTGATATATGGATTTCAAATTAAAGAAGTCTTCCTTCAAGAAGTCCTTTACTGCAATAGGATTGAATAGTTCATGTTTTCAGTGTTCATTGTCTGACTTTATCATCAGGATTTAGCAATTGATGCCACAAGAATGGTTGGTGTGGAACTTGGCCAAGGGTTACGCGAGGTGGACATCAAGAAGTACATCAAGATTGAGAAGGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAGGTATCTCCTCAATTCCATAGGTTTAGCAGATGATAGCTATAAATCACACTATTTTGAGCTGCTCCTTGTGCTTTTTCAGGATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCAT</genome_strand>
        <mrna_strand>AGATGCTGTTGCCGTGCTTGACAAAATTGCAATGACAGTTGATGTTGAAGATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACAATGTTGGGTTTGGTTAAGAGTTGCATCGGCACAAAATTTACTAGTCAATTTGGGGATTTAATTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGCAATTGATGCCACAAGAATGGTTGGTGTGGAACTTGGCCAAGGGTTACGCGAGGTGGACATCAAGAAGTACATCAAGATTGAGAAGGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTG-AAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAG...............................................................................GATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708504" ref_strand="+" ref_description="SGN-E708504 [FA35DG09]">
      <seq>ccattaaatttactagtcaatttggggatttaatttcagatttagcaattgatgccacaagaatggttggtgtggaacttggccaagggttacgcgaggtggacatcaagaagtacatcaagattgagaaggtgcctggtgggcagttggaagactctgtggtgcttaaaggagtaatgatgaacaaagatgtagttgcccctggcaaaatgaagagaaagattgtaaaccctcgcatcattctacttgattgtcccctagagtacaagaaaggtgagaaccaaacaaatgcagagctccttagagaggaggattggactgtcctcttgaaaatggaagaagagtacattgagaacatgtgcgcacagatacttaaattcaagccggatgtggttattactgaaaagggactcagtgatctggcatgccattatctgtgcaaggctggtgtcagtgcaatcagaaggctaaggaagacagacaataacagaattgctaaggcatgtggggcagttattgttaatagacctgatgagttgcaagaatctgatgttggtactggtgccggtctgtttgaagtgaaaaaaattggggatgagttctttacttttattgttgattgcaaggatccgaaagcatgtactatacttttaaggggtgcgagcaaagatctactgaatgaagtagaaagaaatctacaggatgccatgtctgtcgctagaaacatcatcaagtgtcctaagctagttcccggtggtggtgcaacagagttaactgtatctgccatgttaaagcagaaaagttcatccgttgaaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="44653" stop="46889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44952" g_stop="44989" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44990" i_stop="45729" i_length="740">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45730" g_stop="46392" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="701" r_length="663" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46393" i_stop="46471" i_length="79">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46472" g_stop="46589" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="819" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E708504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44952" e_stop="44989"/>
          <exon e_start="45730" e_stop="46392"/>
          <exon e_start="46472" e_stop="46589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAAATTTACTAGTCAATTTGGGGATTTAATTTCAGTAAGTACAATTTATTTCTATTACGCCCCACCCCCACCCCTACCCTCAAAGTGACATGAAATAAATTAAGAAACTTACATCTGGAGGTATTTGGAGCGAAAAAATAAATTGTTTCTTAATTTCGGATAGATGGCCTCTTCTTGAAGGTATGTACTATGTCTAACCTACAAGTGGGAATAACAGAAAGCAATCAAAGCATAATCTATATTTGTGCCTTGATATCTCATGAGTTCTATTACCTCACATCAAATGTTTTGAACATCAAGAAAGAAGACATGGATACATGACTCTTTTTTCCTCGAAAAGGGTAAATAATTAATTGTAAAGAAGCACATGCATACAGACTAGTTAACTACTAATGTTTCTTATGATTTTCTTCTAGTCATATAGATACTTGGTTCTTGTATTTCTTTCCATAGTGTGTTATTTATAATGACTTAAGAAGTTACTTCCCACAACTTGATTGATACTTTTGGGATTGAGATATAGTTCTCGGGATTTGTGTGTGTGTGTGTGTGTATTTTATGGAGCAACGTAAGGTGATGGAAATTCCATCTCTGATCTCTTGGTTCCAGCACCTCGACTTTGGTTTGGTAACCATGAGATCAGGTCTATACCAGGCAACTGGTTGATTGATATATGGATTTCAAATTAAAGAAGTCTTCCTTCAAGAAGTCCTTTACTGCAATAGGATTGAATAGTTCATGTTTTCAGTGTTCATTGTCTGACTTTATCATCAGGATTTAGCAATTGATGCCACAAGAATGGTTGGTGTGGAACTTGGCCAAGGGTTACGCGAGGTGGACATCAAGAAGTACATCAAGATTGAGAAGGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAGGTATCTCCTCAATTCCATAGGTTTAGCAGATGATAGCTATAAATCACACTATTTTGAGCTGCTCCTTGTGCTTTTTCAGGATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCA</genome_strand>
        <mrna_strand>CCATTAAATTTACTAGTCAATTTGGGGATTTAATTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGCAATTGATGCCACAAGAATGGTTGGTGTGGAACTTGGCCAAGGGTTACGCGAGGTGGACATCAAGAAGTACATCAAGATTGAGAAGGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAG...............................................................................GATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706948" ref_strand="+" ref_description="SGN-E706948 [FA31CE08]">
      <seq>cgccttagagaggaggattggactgtcctcttgaaaatggaagaagagtacattgagaacatgtgcgcacagatacttaaattcaagccggatgtggttattactgaaaagggactcagtgatctggcatgccattatctgtgcaaggctggtgtcagtgcaatcagaaggctaaggaagacagacaataacagaattgctaaggcatgtggggcagttattgttaatagacctgatgagttgcaagaatctgatgttggtactggtgccggtctgtttgaagtgaaaaaaattggggatgagttctttacttttattgttgattgcaaggatccgaaagcatgtactatacttttaaggggtgcgagcaaagatctactgaatgaagtagaaagaaatctacaggatgccatgtctgtcgctagaaacatcatcaagtgtcctaagctagttcccggtggtggtgcaacagagttaactgtatctgccatgttaaagcagaaaagttcatccgttgaaggcatagaaaagtggccgtatgaagctgctgcaattgcttttgaagctataccacgaactttggctcagaactgtggtgtaaatgtgattcgtactatgaccgctcttcaaggaaagcatgcaaatggcgagaatgcatggataggcattgatggaaacactggtgagattaccgacatgaaagagcggaagatatgggattcctatgcctgtaaaagcccaggctttttaaaacctgccattgaagcctgcctgcccctacttctgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="45688" stop="47515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45988" g_stop="46392" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46393" i_stop="46471" i_length="79">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46472" g_stop="46597" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="531" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46738" g_stop="46842" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="636" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46926" g_stop="47000" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="711" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47155" g_stop="47228" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="791" r_length="80" r_score="0.797"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E706948" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45988" e_stop="46392"/>
          <exon e_start="46472" e_stop="46597"/>
          <exon e_start="46738" e_stop="46842"/>
          <exon e_start="46926" e_stop="47000"/>
          <exon e_start="47155" e_stop="47228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAGGTATCTCCTCAATTCCATAGGTTTAGCAGATGATAGCTATAAATCACACTATTTTGAGCTGCTCCTTGTGCTTTTTCAGGATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAGGTAAGTAAAGTTCGTCAAGTTATTACTCTTTATTTGCAGATTGAAACAAGTCACGAATATATGATCTTCTGAGACTCTTTGTGGAAATTGAAAAAAAGCCAACGGATGCTAATACTTTCATCCTTCTATCATATATGCAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAGGTATGATATTATATTCTTCCTTCCTACACTCCATGACCCCATCAGAACTAGGATAGGGGATGATTCATGACACACGTGTATGTGTAAGAGTCTGTAAAATGAAGAATGAAAATAGATATTTTTATTTGATTAAACAATCTTTATATATGTGCAGATATGGGATTCCTATG-CTGTAAAAGCACAGGC-TTTTAAAA-CTGCCATTGAAG-CTGCTTG--CCTACTTCTGAGAAT</genome_strand>
        <mrna_strand>CGCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAG...............................................................................GATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAG............................................................................................................................................TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG...................................................................................CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG..........................................................................................................................................................ATATGGGATTCCTATGCCTGTAAAAGCCCAGGCTTTTTAAAACCTGCCATTGAAGCCTGCCTGCCCCTACTTCTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356922" ref_strand="+" ref_description="SGN-E356922 [cTOS-22-J17]">
      <seq>ccatgttaaagcataaaagttcgtccgttgaaggcatagaaaagtggccgtatgaagctgctgcaattgcttttgaagctataccacgaactttggctcagaactgtggagtaaatgtgattcgtactatgaccgctcttcaaggaaagcatgcaaatggcgagaatgcatggataggcattgatggaaacactggtgagattaccgacatgaaagagcggaagatatgggattcctatgctgtaaaagcacaggcttttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaagaatcaagcccctggagcaggacaatgtccatcatgaccaaaaatagacgaagaaggtgatgcagacaatgaccagctaattccggaatgaacatgatatactatgctgcaatggaaatgcttatgcatttgataaccacttggaagttttcatctacttcagtatagtctgcccttgactgattgcttgaactttttgtgcttgacatgtaacttctgctgattttgactgctggcagttgttggttgtatttagaatacattttgtttcagtttttgggtttaattaaatttgatgttgcgagtaaatgactaatcaatgtangggtatcatgatttttcaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="46254" stop="47904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46554" g_stop="46597" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46738" g_stop="46842" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="149" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46926" g_stop="47000" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="224" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47155" g_stop="47604" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="672" r_length="448" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E356922" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46554" e_stop="46597"/>
          <exon e_start="46738" e_stop="46842"/>
          <exon e_start="46926" e_stop="47000"/>
          <exon e_start="47155" e_stop="47604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAGGTAAGTAAAGTTCGTCAAGTTATTACTCTTTATTTGCAGATTGAAACAAGTCACGAATATATGATCTTCTGAGACTCTTTGTGGAAATTGAAAAAAAGCCAACGGATGCTAATACTTTCATCCTTCTATCATATATGCAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAGGTATGATATTATATTCTTCCTTCCTACACTCCATGACCCCATCAGAACTAGGATAGGGGATGATTCATGACACACGTGTATGTGTAAGAGTCTGTAAAATGAAGAATGAAAATAGATATTTTTATTTGATTAAACAATCTTTATATATGTGCAGATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGAT</genome_strand>
        <mrna_strand>CCATGTTAAAGCATAAAAGTTCGTCCGTTGAAGGCATAGAAAAG............................................................................................................................................TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGAGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG...................................................................................CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG..........................................................................................................................................................ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAATCAAGCCCCTGGAGCAGGACAATGTCCATCATGACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGATTTTGACTGCTGGCAGTTGTTGGTTGTATTTAGAATACATTTTGTTTCAGTTTTTGGGTTT-AATTAAATTTGATGTTGCGAGTA-AATGACTAATCAATGTANGGGTATCATGATTTTTCAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352432" ref_strand="+" ref_description="SGN-E352432 [cTOS-9-J10]">
      <seq>ccatgttaaagcagaaaagttcatccgttgaaggcatagaaaagtggccgtatgaagctgctgcaattgcttttgaagctataccacgaactttggctcagaactgtggtgtaaatgtgattcgtactatgaccgctcttcaaggaaagcatgcaaatggcgagaatgcatggataggcattgatggaaacactggtgagattaccgacatgaaagagcggaagatatgggattcctatgctgtaaaagcacaggcttttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaagaagcaagcccctggagcaggacaaggtccatcaaaaccaaaaatagacgaagaaggtgatgcagacaatgaccagctaattccggaatgaacatgatatactatgctgcaatggaaatgcttatgcatttgataaccacttggaagttttcatctacttcagtatagtctgcccttgactgattgcttgaactttttgtgcttgacatgtaacttctgctgtttttgactgctggcagatgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="46254" stop="47801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46554" g_stop="46597" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46738" g_stop="46842" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="149" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46926" g_stop="47000" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="224" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47155" g_stop="47501" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="571" r_length="347" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E352432" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46554" e_stop="46597"/>
          <exon e_start="46738" e_stop="46842"/>
          <exon e_start="46926" e_stop="47000"/>
          <exon e_start="47155" e_stop="47501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAGGTAAGTAAAGTTCGTCAAGTTATTACTCTTTATTTGCAGATTGAAACAAGTCACGAATATATGATCTTCTGAGACTCTTTGTGGAAATTGAAAAAAAGCCAACGGATGCTAATACTTTCATCCTTCTATCATATATGCAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAGGTATGATATTATATTCTTCCTTCCTACACTCCATGACCCCATCAGAACTAGGATAGGGGATGATTCATGACACACGTGTATGTGTAAGAGTCTGTAAAATGAAGAATGAAAATAGATATTTTTATTTGATTAAACAATCTTTATATATGTGCAGATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGG</genome_strand>
        <mrna_strand>CCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAG............................................................................................................................................TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG...................................................................................CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG..........................................................................................................................................................ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGATGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356895" ref_strand="+" ref_description="SGN-E356895 [cTOS-22-M18]">
      <seq>acagaaaaatacatccatagagagcgtaaaaaagaggccgaatgaagctgctgcaattgcttttgaaactataccacaaactttggctcagaactgtggtgtaaatgtgattcgtactatgaccgctcttcaaggaaagcatgcaaatggcgagaatgcatggataggcattgatggaaacactggtgagattaccgacatgaaagagcggaacatatgggattcctatgctgtaaaagcacaggcttttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaagaagcaagcccctggagcaggacaaggtccatcaaaaccaaaaatagacgaagaaggtgatgcagacaatgaccagctaattccggaatgaacatgatatactatgctgcaatggaaatgcttatgcatttgataaccacttggaagttttcatctacttcactatantctgcccttgactgattgcttggactttttgtgcttgacatgtaacttctgctgtttttgactgctggcagatgctgggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="46436" stop="47805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46564" g_stop="46597" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.735"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.821" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46738" g_stop="46842" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="139" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46926" g_stop="47000" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="214" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47155" g_stop="47505" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="565" r_length="351" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E356895" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46564" e_stop="46597"/>
          <exon e_start="46738" e_stop="46842"/>
          <exon e_start="46926" e_stop="47000"/>
          <exon e_start="47155" e_stop="47505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAGGTAAGTAAAGTTCGTCAAGTTATTACTCTTTATTTGCAGATTGAAACAAGTCACGAATATATGATCTTCTGAGACTCTTTGTGGAAATTGAAAAAAAGCCAACGGATGCTAATACTTTCATCCTTCTATCATATATGCAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAGGTATGATATTATATTCTTCCTTCCTACACTCCATGACCCCATCAGAACTAGGATAGGGGATGATTCATGACACACGTGTATGTGTAAGAGTCTGTAAAATGAAGAATGAAAATAGATATTTTTATTTGATTAAACAATCTTTATATATGTGCAGATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGT</genome_strand>
        <mrna_strand>ACAGAAAAATACATCCATAGAGAGCGTAAAAAAG............................................................................................................................................AGGCCGAATGAAGCTGCTGCAATTGCTTTTGAAACTATACCACAAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG...................................................................................CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAC..........................................................................................................................................................ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCACTATANTCTGCCCTTGACTGATTGCTTGGACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGATGCTGGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352220" ref_strand="+" ref_description="SGN-E352220 [cTOS-13-J7]">
      <seq>agaaaagttcatccgttgaaggcatagaaaagtggccgtatgaagctgctgcaattgcttttgaagctataccacgaactttggctcagaactgtggtgtaaatgtgattcgtactatgaccgctcttcaaggaaagcatgcaaatggcgagaatgcatggataggcattgatggaaacactggtgagattaccgacatgaaagagcggaagatatgggattcctatgctgtaaaagcacaggcttttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaaagagcaagcccctggagcaggacaaggtcccatcaaacccaaaatagacgaagaaagtgatgcagacaatgaccagctaatccggaatgaacatgatatactatgctgcaatgggaatgcttatgcatttgataacacttggaaagtttcatctacttcagtatagtctgcccttgactgattgctttgacttttttgtgcttgacatgtaacttctgctgtttttgactgctgggcagttgtggttgtatttgaaatagattttgtttcagttttgggttttaaattaaattgatggtgcaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="46266" stop="47866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46566" g_stop="46597" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46738" g_stop="46842" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="137" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46926" g_stop="47000" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="212" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47155" g_stop="47572" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="628" r_length="416" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E352220" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46566" e_stop="46597"/>
          <exon e_start="46738" e_stop="46842"/>
          <exon e_start="46926" e_stop="47000"/>
          <exon e_start="47155" e_stop="47572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGTTCATCCGTTGAAGGCATAGAAAAGGTAAGTAAAGTTCGTCAAGTTATTACTCTTTATTTGCAGATTGAAACAAGTCACGAATATATGATCTTCTGAGACTCTTTGTGGAAATTGAAAAAAAGCCAACGGATGCTAATACTTTCATCCTTCTATCATATATGCAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAGGTATGATATTATATTCTTCCTTCCTACACTCCATGACCCCATCAGAACTAGGATAGGGGATGATTCATGACACACGTGTATGTGTAAGAGTCTGTAAAATGAAGAATGAAAATAGATATTTTTATTTGATTAAACAATCTTTATATATGTGCAGATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGT-CCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGC-TTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGG-CAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTA</genome_strand>
        <mrna_strand>AGAAAAGTTCATCCGTTGAAGGCATAGAAAAG............................................................................................................................................TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG...................................................................................CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG..........................................................................................................................................................ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAAGAGCAAGCCCCTGGAGCAGGACAAGGTCCCATC-AAACCCAAAATAGACGAAGAAAGTGATGCAGACAATGACCAGCTAA-TCCGGAATGAACATGATATACTATGCTGCAATGGGAATGCTTATGCATTTGATAA-CACTTGGAAAGTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTTGACTTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGGCAGTTG-TGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTGGGTTTTAAATTAAA-TTGATGGTGCAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355287" ref_strand="+" ref_description="SGN-E355287 [cTOS-18-A1]">
      <seq>agaaaagttcatccgttgaaggcatagaaaagtggccgtatgaagctgctgcaattgcttttgaagctataccacgaactttggctcagaactgtggtgtaaatgtgattcgtactatgaccgctcttcaaggaaagcatgcaaatggcgagaatgcatggataggcattgatggaaacactggtgagattaccgacatgaaagagcggaagatatgggattcctatgctgtaaaagcacaggcttttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaagaagcaagcccctggagcaggacaaggtccatcaaaaccaaaaatagacgaagaaggtgatgcagacaatgaccagctaattccggaatgaacatgatatactatgctgcaatggaaatgcttatgcatttgataaccacttggaagttttcatctacttcagtatagtctgcccttgactgattgcttgaactttttgtgcttgacatgtaacttctgctgtttttgactgctggcagttgttggttgtatttgaaatagatttgtttcagtttttggttttaaatttaatttgatgttgcagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="46266" stop="47866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46566" g_stop="46597" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46738" g_stop="46842" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="137" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46926" g_stop="47000" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="212" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47155" g_stop="47572" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="628" r_length="416" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E355287" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46566" e_stop="46597"/>
          <exon e_start="46738" e_stop="46842"/>
          <exon e_start="46926" e_stop="47000"/>
          <exon e_start="47155" e_stop="47572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGTTCATCCGTTGAAGGCATAGAAAAGGTAAGTAAAGTTCGTCAAGTTATTACTCTTTATTTGCAGATTGAAACAAGTCACGAATATATGATCTTCTGAGACTCTTTGTGGAAATTGAAAAAAAGCCAACGGATGCTAATACTTTCATCCTTCTATCATATATGCAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAGGTATGATATTATATTCTTCCTTCCTACACTCCATGACCCCATCAGAACTAGGATAGGGGATGATTCATGACACACGTGTATGTGTAAGAGTCTGTAAAATGAAGAATGAAAATAGATATTTTTATTTGATTAAACAATCTTTATATATGTGCAGATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTA</genome_strand>
        <mrna_strand>AGAAAAGTTCATCCGTTGAAGGCATAGAAAAG............................................................................................................................................TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG...................................................................................CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG..........................................................................................................................................................ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGA-TTTGTTTCAGTTTTTGGTTTTAAATTTAATTTGATGTTGC-AGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356284" ref_strand="+" ref_description="SGN-E356284 [cTOS-20-A19]">
      <seq>agaaaagttcatccgttgaaggcatagaaaagtggccgtatgaagctgctgcaattgcttttgaagctataccacgaactttggctcagaactgtggtgtaaatgtgattcgtactatgaccgctcttcaaggaaagcatgcaaatggcgagaatgcatggataggcattgatggaaacactggtgagattaccgacatgaaagagcggaagatatgggattcctatgctgtaaaagcacaggcttttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaagaagcaagcccctggagcaggacaaggtccatcaaaaccaaaaatagacgaagaaggtgatgcagacaatgaccagctaattccggaatgaacatgatatactatgctgcaatggaaatgcttatgcatttgataaccacttggaagttttcatctacttcagtatagtctgcccttgactgattgcttgaactttttgtgcttgacatgtaacttctgctgtttttgactgctggcagttgttggttgtatttgaaatagattttgtttcagtttttggttttaaattaaatttgatgttgcaagtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="46266" stop="47866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46566" g_stop="46597" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46738" g_stop="46842" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="137" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46926" g_stop="47000" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="212" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47155" g_stop="47566" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="624" r_length="412" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E356284" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46566" e_stop="46597"/>
          <exon e_start="46738" e_stop="46842"/>
          <exon e_start="46926" e_stop="47000"/>
          <exon e_start="47155" e_stop="47566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGTTCATCCGTTGAAGGCATAGAAAAGGTAAGTAAAGTTCGTCAAGTTATTACTCTTTATTTGCAGATTGAAACAAGTCACGAATATATGATCTTCTGAGACTCTTTGTGGAAATTGAAAAAAAGCCAACGGATGCTAATACTTTCATCCTTCTATCATATATGCAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAGGTATGATATTATATTCTTCCTTCCTACACTCCATGACCCCATCAGAACTAGGATAGGGGATGATTCATGACACACGTGTATGTGTAAGAGTCTGTAAAATGAAGAATGAAAATAGATATTTTTATTTGATTAAACAATCTTTATATATGTGCAGATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAA</genome_strand>
        <mrna_strand>AGAAAAGTTCATCCGTTGAAGGCATAGAAAAG............................................................................................................................................TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG...................................................................................CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG..........................................................................................................................................................ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307666" ref_strand="+" ref_description="SGN-E307666 [cLEY-16-B18]">
      <seq>atccgtcgaaggcataaaaaagtggccgtgggaagcttctggaattgcttttgaagctataccacgaactttggctcagaactggggtgtaaatgtgattcgtactatgaccgctcttcaaggaaagcatgcaaatggcgagaatgcatggataggcattgatggaaacactggtgagattaccgacatgaaagagcggaagatatgggattcctatgctgtaaaagcacaggcttttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaagaagcaagcccctggagcaggacaaggtccatcaaaaccaaaaatagacgaagaaggtgatgcacacaatgaccagctaattccggaatgaacatgatatactatgctgcaatggaaatgcttatgcatttgataaccacttggaagttatcatctacttcagaataatctgcccttgactgattgcttgaactttttgtgcttgacatgtaacttctgctgtttttgactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="46436" stop="47789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46576" g_stop="46597" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.821" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46738" g_stop="46842" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="127" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46926" g_stop="47000" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="202" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47155" g_stop="47489" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="537" r_length="335" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E307666" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46576" e_stop="46597"/>
          <exon e_start="46738" e_stop="46842"/>
          <exon e_start="46926" e_stop="47000"/>
          <exon e_start="47155" e_stop="47489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGTTGAAGGCATAGAAAAGGTAAGTAAAGTTCGTCAAGTTATTACTCTTTATTTGCAGATTGAAACAAGTCACGAATATATGATCTTCTGAGACTCTTTGTGGAAATTGAAAAAAAGCCAACGGATGCTAATACTTTCATCCTTCTATCATATATGCAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAGGTATGATATTATATTCTTCCTTCCTACACTCCATGACCCCATCAGAACTAGGATAGGGGATGATTCATGACACACGTGTATGTGTAAGAGTCTGTAAAATGAAGAATGAAAATAGATATTTTTATTTGATTAAACAATCTTTATATATGTGCAGATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCT</genome_strand>
        <mrna_strand>ATCCGTCGAAGGCATAAAAAAG............................................................................................................................................TGGCCGTGGGAAGCTTCTGGAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGGGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG...................................................................................CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG..........................................................................................................................................................ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCACACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTATCATCTACTTCAGAATAATCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372501" ref_strand="+" ref_description="SGN-E372501 [TUS-32-I14]">
      <seq>taaatgtgattcgtactatgaccgctcttcaaggaaagcatgcaaatggcgagaatgcatggataggcattgatggaaacactggtgagattaccgacatgaaagagcggaagatatgggattcctatgctgtaaaagcacaggcttttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaagaagcaagcccctggagcaggacaaggtccatcaaaaccaaaaatagacgaagaaggtgatgcagacaatgaccagctaattccggaatgaacatgatatactatgctgcaatggaaatgcttatgcatttgataaccacttggaagttttcatctacttcagtatagtctgcccttgactgattgcttgaactttttgtgcttgacatgtaacttctgctgtttttgactgctggcagttgttggttgtatttgaaatagattttgtttcagtttttggttttaaattaaatttgatgttgcaagtacaatgactaatcaatgtaggggtatcatgtttttcaaggatccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="46505" stop="85316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46805" g_stop="46842" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46926" g_stop="47000" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="113" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47155" g_stop="47618" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="577" r_length="464" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47619" i_stop="47742" i_length="124">
            <donor d_prob="0.961" d_score="0.90"/>
            <acceptor a_prob="0.720" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47743" g_stop="47751" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="586" r_length="9" r_score="0.444"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E372501" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46805" e_stop="46842"/>
          <exon e_start="46926" e_stop="47000"/>
          <exon e_start="47155" e_stop="47618"/>
          <exon e_start="47743" e_stop="47751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAGGTATGATATTATATTCTTCCTTCCTACACTCCATGACCCCATCAGAACTAGGATAGGGGATGATTCATGACACACGTGTATGTGTAAGAGTCTGTAAAATGAAGAATGAAAATAGATATTTTTATTTGATTAAACAATCTTTATATATGTGCAGATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGATCCAACAAATTGAAGGCCATACAAATCAAATTCAGGAAACTTATGTTGAGTCATGAACTCAATTCTAGCAAACAATAATGCATTATTAAGTGCAGAATGTCAAAATAAACCTTAATATTCACTAAGGGTTTATTTGTAGGAGGCACAA</genome_strand>
        <mrna_strand>TAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG...................................................................................CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG..........................................................................................................................................................ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGATCCAAAAAAAAAAAA............................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292692" ref_strand="+" ref_description="SGN-E292692 [cLET-11-O2]">
      <seq>taaatgtgattcgtactatgaccgctcttcaaggaaagcatgcaaatggcgagaatgcatggataggcattgatggaaacactggtgagattaccgacatgaaagagcggaagatatgggattcctatgctgtaaaagcacaggcttttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaagaagcaagcccctggagcaggacaaggtccatcaaaaccaaaaatagacgaagaaggtgatgcagacaatgaccagctaattccggaatgaacatgatatactatgctgcaatggaaatgcttatgcatttgataaccacttggaagttttcatctacttcagtatagtctgcccttgactgattgcttgaactttttgtgcttgacatgtaacttctgctgtttttgactgctggcagttgttggttgtatttgaaatagattttgtttcagtttttggttttaaattaaatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="46505" stop="47853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46805" g_stop="46842" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46926" g_stop="47000" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="113" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47155" g_stop="47553" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="512" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E292692" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46805" e_stop="46842"/>
          <exon e_start="46926" e_stop="47000"/>
          <exon e_start="47155" e_stop="47553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAGGTATGATATTATATTCTTCCTTCCTACACTCCATGACCCCATCAGAACTAGGATAGGGGATGATTCATGACACACGTGTATGTGTAAGAGTCTGTAAAATGAAGAATGAAAATAGATATTTTTATTTGATTAAACAATCTTTATATATGTGCAGATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGAT</genome_strand>
        <mrna_strand>TAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG...................................................................................CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG..........................................................................................................................................................ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352905" ref_strand="+" ref_description="SGN-E352905 [cTOS-11-P1]">
      <seq>aaaagcacaggcttttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaagaagcaagcccctggagcaggacaaggtccatcaaaaccaaaaatagacgaagaaggtgatgcagacaatgaccagctaattccggaatgaacatgatatactatgctgcaatggaaatgcttatgcatttgataaccacttggaagttttcatctacttcagtatagtctgcccttgactgattgcttgaactttttgtgcttgacatgtaacttctgctgtttttgactgctggcagttgttggttgtatttgaaatagattttgtttcagtttttggttttaaattaaatttgatgttgcaagtacaatgactaatcaatgtaggggtatcatgttttttcaggatccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="46875" stop="47912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47175" g_stop="47616" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E352905" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47175" e_stop="47616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGATCCAACAAATTGA</genome_strand>
        <mrna_strand>AAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTTCAGGATCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357111" ref_strand="+" ref_description="SGN-E357111 [cTOS-22-B10]">
      <seq>aaaagcacaggcttttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaagaagcaagcccctggagcaggacaaggtccatcaaaaccaaaaatagacgaagaaggtgatgcagacaatgaccagctaattccggaatgaacatgatatactatgctgcaatggaaatgcttatgcatttgataaccacttggaagttttcatctacttcagtatagtctgcccttgactgattgcttgaactttttgtgcttgacatgtaacttctgctgtttttgactgctggcagttgttggttgtatttgaaatagattttgtttcagtttttggttttaaattaaatttgatgttgcaagtacaatgactaatcaatgtaggggtatcatgtttttcaaggatccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="46875" stop="47912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47175" g_stop="47616" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E357111" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47175" e_stop="47616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGATCCAACAAATTGA</genome_strand>
        <mrna_strand>AAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGATCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392858" ref_strand="+" ref_description="SGN-E392858 [TUS-36-B20](-)">
      <seq>tgcatggttttcatgcaaaagaggcagttcaagccttacaagaacatttgcaaaagattgaatttcagggggcacagaataagggcagctttggaggtgctgttttttttgatgtggggaatgagagcaaagggtcccacctattgaataagcaggggccagcttttttaggggtcataacaggtaaaggtatttatagccggggacaaggtgcacttccaaagggtttaagaaggttttttggggggaagggatattgttttggggggacaaggcccggggggatcacagttagacccaagttccgaccccgataaatacgtttatatgtatattttgggtcccaatttagggcatttgtttttgttggtttcaactttgacctagggattttgggttttgaaatggttttataaaaaagaccagaaacctgttggggttatatactgttgaatatttttgtaattgcataccatcaaacattgtatgtattttggtgatttttccccaggtccaaaataacacttgaaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="50430" stop="48644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50130" g_stop="49948" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49947" i_stop="49398" i_length="550">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49397" g_stop="49328" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="253" r_length="70" r_score="0.857"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49327" i_stop="49227" i_length="101">
            <donor d_prob="0.993" d_score="0.82"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49226" g_stop="48938" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="542" r_length="289" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="582"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E392858" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50130" e_stop="49948"/>
          <exon e_start="49397" e_stop="49328"/>
          <exon e_start="49226" e_stop="48938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAGGTATTTTTCTCTTGAAAAGTGTTGCTCAAGGATATGATACATCTTACAAGTCTAGATGTATTCACCAGCAACATGTTCTTCATTATGGTTGTAGTAATAAGTTGGAGTGTGTTTGGACCTGTTATTACTTTATGAATCTTCATCATTCACTCTATTTCCTTAGCTCTAGGCATTCTGTTACTATCTTCTGGAAGTGTCGAAGTGTTGTGAGAATTATGTGTTTTTCTAAAATATTTTGTTTTTAGTTGCTTTACTAGGAAGATTGAGTATCCTGGTTGAATTGTTATGCTTGATATTTGGTCAATCACAATCATGGAGCTCAATCTCATACATGTTACCGAATCATAACATCATGTATCTAAATGAGTTATTAGCCCTTCCCTTTAATAGAACATGTAATGGTGGTCATACTTCCCGGTGTCAAAACTTATCATGGATTGTCGCTTATTTTTTAATTTATTCAGTTGGAGCCTCTTTTGTTACTAGTACCTTAACTTACTTACAAGATAAAGTTGTCTGACTAGTGTCAAGTGTTGTTGCGTTTTCACAGGTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGGGTATATTTCTTTTCCAGGAACTTTTGTATGCTTTTGGCAAATGTTTTTTTTTATTTCCCCGATCAATAAACTAAGTGGAATGTGAATCTCATGTTCTGTAGATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTAGACCCAAGTTCCGACCACGATAAATACGTTCATATGTATATTTTGGGTCCCAATTTAGTGCATTTGTTTCTGTTGCTATCAACTTTGACCTAGAGATTTTGAGTCTTGAACTGGTCTTATAAAAACGACCAGAAACCTGTTGTGGTTATATACTGTTGAATATTTCTGTAATTGCATACCATCAAACATTGTATGTACTTTGCTGATTTCTCCACAGGTCCAAACTAACACTTGAAAGTATATTGGAG</genome_strand>
        <mrna_strand>TGCATGGTTTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATTTCAGGGGGCACAGAATAAGGGCAGCTTTGGAGGTGCTGTTTTTTTTGATGTGGGGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGGGGCCAGCTTTTTTAGGGGTCATAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGTATTTATAGCCGGGGACAAGGTGCACTTCCAAAGGGTTTAAGAAGGTTTTTTGGGGGGAAGGG.....................................................................................................ATATTGTTTTGGGGGGACAAGGCCCGGGGGGATCACAGTTAGACCCAAGTTCCGACCCCGATAAATACGTTTATATGTATATTTTGGGTCCCAATTTAGGGCATTTGTTTTTGTTGGTTTCAACTTTGACCTAGGGATTTTGGGTTTTGAAATGGTTTTATAAAAAAGACCAGAAACCTGTTGGGGTTATATACTGTTGAATATTTTTGTAATTGCATACCATCAAACATTGTATGTATTTTGGTGATTTTTCCCCAGGTCCAAAATAACACTTGAAAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392754" ref_strand="+" ref_description="SGN-E392754 [TUS-36-B20]">
      <seq>ctgagtgggaagaggatgatatttactcgatccatcggaaggatgcagtgaagatgacgaggtcggcagcccgacattctaaggctgccagtgaggcctatctcagaggagaccacttatctgcccaacatttttctctaaaagcccaagaagagtgggatgctgctaataggctaaatgcccaggctgcaaaagaaattttgactgcctgcaacggtaagaatgatcaatggacactggacttgcatggtcttcatgcaaaagaggcagttcaagccttacaagaacatttgcaaaagattgaatctcaggtggcacagaataagcgcagctttggagctgctgtctcttttgatgtggagaatgagagcaaagggtcccacctattgaataagcagcggccagctttcttagaggtcataacaggtaaaggtattcatagccggggacaagctgcacttccaatggctataagaagctttctcgtggagaagggatatcgttatgaggagacaaggcccggggtgatcacagttagacccaagttccgaccacgataaatacgttcatatgtatattttgggtcccaatttagtgcatttgtttctgttgctatcaactttgacctagagattttgagtcttngactggtcttataaaaacgaccagaaacctgttgtggttatatactgttgaatatttctgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="51657" stop="48715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51357" g_stop="51297" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51296" i_stop="50313" i_length="984">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50312" g_stop="49948" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="426" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49947" i_stop="49398" i_length="550">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49397" g_stop="49328" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="496" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49327" i_stop="49227" i_length="101">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49226" g_stop="49015" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="708" r_length="212" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E392754" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51357" e_stop="51297"/>
          <exon e_start="50312" e_stop="49948"/>
          <exon e_start="49397" e_stop="49328"/>
          <exon e_start="49226" e_stop="49015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTGGGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAGGTAGATTTACTTGCACTTGTCTATACGCGTTTACCTTTTCAGTGAAAACATGATTGATTTACATTTTCCCTGCTTCCCTGTCTTCTTTTAATTTCATTTAAGATTGCAAGGATAGTTTATACTGACGATAAGGACAACTTTATCAGTGAGGGTCAAGCATTGGCTGGGTTTCATTCAGGCCAGTAATTTCACCAAATTATTAAAACTCTGATTCTTTTATTGAAAATTTGAGCCATTTACCAATTTGAGGGAATCGAAAAGAAATATGATTACATTCATGAGAGGAAAAGGAACTCCAACAACTTTCCCATCTTCCCTCCTTTCATTTACCATGGTCAGTAGTAACACCTTTTTAAGTAAATAGAGAATAATGTGGAAAGTTGGGATGCAGACAGTTTGCAGCTAAAGTTCAATGACAACCCACAGTTTACATAGCCCACTATTTGAATATCTAAAGTTTCCTTAATCTAATTGCTGCAGGTACCTAGTGGGTAATATATTTAAAATTCTGCCAGGGTAAATCAGGACAGTAAAGACTGGTAGACTGAGTCTGTTTTCCATGAAAGGGTATTTTAGTATCTTTTATATTATGCATAAATGGAAGACAGTGGTAGTTGGTGAACGTTTCTTTTGTTATTGATTTTTCTATATTTGAAGTGATACTCTCTAAGATCCCATGAACAGAAGATGTCTCTCAAAGCTCTGCCAGGTTTGGTTATCAAATAAAGATAATTAATTATCTTTGGCATATTTTAGTATGAAACATTGGGAGAAAATTATAGGGGCCAAACAACTTCAATAGCAGATATCGCTTTTTCAACAAACTAAGTTAGGCAACATATTATGATGAAACAAACCATCTTCATTCTTTGTTGTTAACATTACAACCGTAATTGTTATAAGTTTCATGGTTTTGAACGTGTTGATATCTTATCCAAGTTATAATTAAATCAATTCTGAAATCCTCTCTCATTCTATGAACAGGTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAGGTATTTTTCTCTTGAAAAGTGTTGCTCAAGGATATGATACATCTTACAAGTCTAGATGTATTCACCAGCAACATGTTCTTCATTATGGTTGTAGTAATAAGTTGGAGTGTGTTTGGACCTGTTATTACTTTATGAATCTTCATCATTCACTCTATTTCCTTAGCTCTAGGCATTCTGTTACTATCTTCTGGAAGTGTCGAAGTGTTGTGAGAATTATGTGTTTTTCTAAAATATTTTGTTTTTAGTTGCTTTACTAGGAAGATTGAGTATCCTGGTTGAATTGTTATGCTTGATATTTGGTCAATCACAATCATGGAGCTCAATCTCATACATGTTACCGAATCATAACATCATGTATCTAAATGAGTTATTAGCCCTTCCCTTTAATAGAACATGTAATGGTGGTCATACTTCCCGGTGTCAAAACTTATCATGGATTGTCGCTTATTTTTTAATTTATTCAGTTGGAGCCTCTTTTGTTACTAGTACCTTAACTTACTTACAAGATAAAGTTGTCTGACTAGTGTCAAGTGTTGTTGCGTTTTCACAGGTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGGGTATATTTCTTTTCCAGGAACTTTTGTATGCTTTTGGCAAATGTTTTTTTTTATTTCCCCGATCAATAAACTAAGTGGAATGTGAATCTCATGTTCTGTAGATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTAGACCCAAGTTCCGACCACGATAAATACGTTCATATGTATATTTTGGGTCCCAATTTAGTGCATTTGTTTCTGTTGCTATCAACTTTGACCTAGAGATTTTGAGTCTTGAACTGGTCTTATAAAAACGACCAGAAACCTGTTGTGGTTATATACTGTTGAATATTTCTGTAA</genome_strand>
        <mrna_strand>CTGAGTGGGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGG.....................................................................................................ATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTAGACCCAAGTTCCGACCACGATAAATACGTTCATATGTATATTTTGGGTCCCAATTTAGTGCATTTGTTTCTGTTGCTATCAACTTTGACCTAGAGATTTTGAGTCTTNGACTGGTCTTATAAAAACGACCAGAAACCTGTTGTGGTTATATACTGTTGAATATTTCTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235376" ref_strand="+" ref_description="SGN-E235376 [cLED-11-N7]">
      <seq>tgagtgggaagaggatgatatttactcgatccatcggaaggatgcagtgaagatgacgaggtcggcagcccgacattctaaggctgccagtgaggcctatctcagaggagaccacttatctgcccaacatttttctctaaaagcccaagaagagtgggatgctgctaataggctaaatgcccaggctgcaaaagaaattttgactgcctgcaacggtaagaatgatcaatggacactggacttgcatggtcttcatgcaaaagaggcagttcaagccttacaagaacatttgcaaaagattgaatctcaggtggcacagaataagcgcagctttggagctgctgtctcttttgatgtggagaatgagagcaaagggtcccacctattgaataagcagcggccagctttcttagaggtcataacaggtaaaggtattcatagccggggacaagctgcacttccaatggctataagaagctttctcgtggagaagggatatcgttatgaggagacaaggcccggggtgatcacagttagacccaagttccgaccacgataaatacgttcatatgtatattttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="51656" stop="48838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51356" g_stop="51297" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51296" i_stop="50313" i_length="984">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50312" g_stop="49948" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="425" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49947" i_stop="49398" i_length="550">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49397" g_stop="49328" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="495" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49327" i_stop="49227" i_length="101">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49226" g_stop="49138" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="584" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E235376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51356" e_stop="51297"/>
          <exon e_start="50312" e_stop="49948"/>
          <exon e_start="49397" e_stop="49328"/>
          <exon e_start="49226" e_stop="49138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGGGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAGGTAGATTTACTTGCACTTGTCTATACGCGTTTACCTTTTCAGTGAAAACATGATTGATTTACATTTTCCCTGCTTCCCTGTCTTCTTTTAATTTCATTTAAGATTGCAAGGATAGTTTATACTGACGATAAGGACAACTTTATCAGTGAGGGTCAAGCATTGGCTGGGTTTCATTCAGGCCAGTAATTTCACCAAATTATTAAAACTCTGATTCTTTTATTGAAAATTTGAGCCATTTACCAATTTGAGGGAATCGAAAAGAAATATGATTACATTCATGAGAGGAAAAGGAACTCCAACAACTTTCCCATCTTCCCTCCTTTCATTTACCATGGTCAGTAGTAACACCTTTTTAAGTAAATAGAGAATAATGTGGAAAGTTGGGATGCAGACAGTTTGCAGCTAAAGTTCAATGACAACCCACAGTTTACATAGCCCACTATTTGAATATCTAAAGTTTCCTTAATCTAATTGCTGCAGGTACCTAGTGGGTAATATATTTAAAATTCTGCCAGGGTAAATCAGGACAGTAAAGACTGGTAGACTGAGTCTGTTTTCCATGAAAGGGTATTTTAGTATCTTTTATATTATGCATAAATGGAAGACAGTGGTAGTTGGTGAACGTTTCTTTTGTTATTGATTTTTCTATATTTGAAGTGATACTCTCTAAGATCCCATGAACAGAAGATGTCTCTCAAAGCTCTGCCAGGTTTGGTTATCAAATAAAGATAATTAATTATCTTTGGCATATTTTAGTATGAAACATTGGGAGAAAATTATAGGGGCCAAACAACTTCAATAGCAGATATCGCTTTTTCAACAAACTAAGTTAGGCAACATATTATGATGAAACAAACCATCTTCATTCTTTGTTGTTAACATTACAACCGTAATTGTTATAAGTTTCATGGTTTTGAACGTGTTGATATCTTATCCAAGTTATAATTAAATCAATTCTGAAATCCTCTCTCATTCTATGAACAGGTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAGGTATTTTTCTCTTGAAAAGTGTTGCTCAAGGATATGATACATCTTACAAGTCTAGATGTATTCACCAGCAACATGTTCTTCATTATGGTTGTAGTAATAAGTTGGAGTGTGTTTGGACCTGTTATTACTTTATGAATCTTCATCATTCACTCTATTTCCTTAGCTCTAGGCATTCTGTTACTATCTTCTGGAAGTGTCGAAGTGTTGTGAGAATTATGTGTTTTTCTAAAATATTTTGTTTTTAGTTGCTTTACTAGGAAGATTGAGTATCCTGGTTGAATTGTTATGCTTGATATTTGGTCAATCACAATCATGGAGCTCAATCTCATACATGTTACCGAATCATAACATCATGTATCTAAATGAGTTATTAGCCCTTCCCTTTAATAGAACATGTAATGGTGGTCATACTTCCCGGTGTCAAAACTTATCATGGATTGTCGCTTATTTTTTAATTTATTCAGTTGGAGCCTCTTTTGTTACTAGTACCTTAACTTACTTACAAGATAAAGTTGTCTGACTAGTGTCAAGTGTTGTTGCGTTTTCACAGGTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGGGTATATTTCTTTTCCAGGAACTTTTGTATGCTTTTGGCAAATGTTTTTTTTTATTTCCCCGATCAATAAACTAAGTGGAATGTGAATCTCATGTTCTGTAGATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTAGACCCAAGTTCCGACCACGATAAATACGTTCATATGTATATTTTGGGT</genome_strand>
        <mrna_strand>TGAGTGGGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGG.....................................................................................................ATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTAGACCCAAGTTCCGACCACGATAAATACGTTCATATGTATATTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301844" ref_strand="-" ref_description="SGN-E301844 [cLEW-25-C3]">
      <seq>agagcaacagtcaggaactaataaataactgtgtttctcacgagaacaaacttcattttgatggagcagtggggagtatgagctttgtaccggttgagcctgagtgggaagaggatgatatttactcgatccatcggaaggatgcagtgaagatgacgaggtcggcagcccgacattctaaggctgccagtgaggcctatctcagaggagaccacttatctgcccaacatttttctctaaaagcccaagaagagtgggatgctgctaataggctaaatgcccaggctgcaaaagaaattttgactgcctgcaacggtaagaatgatcaatggacactggacttgcatggtcttcatgcaaaagaggcagttcaagccttacaagaacatttgcaaaagattgaatctcaggtggcacagaataagcgcagctttggagctgctgtctcttttgatgtggagaatgagagcaaagggtcccacctattgaataagcagcggccagctttcttagaggtcataacaggtaaaggtattcatagccggggacaagctgcacttccaatggctataagaagctttctcgtggagaagggatatcgttatgaggagacaaggcccggggtgatcacagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="51756" stop="48886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51456" g_stop="51297" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51296" i_stop="50313" i_length="984">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50312" g_stop="49948" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="525" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49947" i_stop="49398" i_length="550">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49397" g_stop="49328" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="595" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49327" i_stop="49227" i_length="101">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49226" g_stop="49186" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="636" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E301844" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301844" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51456" e_stop="51297"/>
          <exon e_start="50312" e_stop="49948"/>
          <exon e_start="49397" e_stop="49328"/>
          <exon e_start="49226" e_stop="49186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCAACAGTCAGGAACTAATAAATAACTGTGTTTCTCACGAGAACAAACTTCATTTTGATGGAGCAGTGGGGAGTATGAGCTTTGTACCGGTTGAGCCTGAGTGGGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAGGTAGATTTACTTGCACTTGTCTATACGCGTTTACCTTTTCAGTGAAAACATGATTGATTTACATTTTCCCTGCTTCCCTGTCTTCTTTTAATTTCATTTAAGATTGCAAGGATAGTTTATACTGACGATAAGGACAACTTTATCAGTGAGGGTCAAGCATTGGCTGGGTTTCATTCAGGCCAGTAATTTCACCAAATTATTAAAACTCTGATTCTTTTATTGAAAATTTGAGCCATTTACCAATTTGAGGGAATCGAAAAGAAATATGATTACATTCATGAGAGGAAAAGGAACTCCAACAACTTTCCCATCTTCCCTCCTTTCATTTACCATGGTCAGTAGTAACACCTTTTTAAGTAAATAGAGAATAATGTGGAAAGTTGGGATGCAGACAGTTTGCAGCTAAAGTTCAATGACAACCCACAGTTTACATAGCCCACTATTTGAATATCTAAAGTTTCCTTAATCTAATTGCTGCAGGTACCTAGTGGGTAATATATTTAAAATTCTGCCAGGGTAAATCAGGACAGTAAAGACTGGTAGACTGAGTCTGTTTTCCATGAAAGGGTATTTTAGTATCTTTTATATTATGCATAAATGGAAGACAGTGGTAGTTGGTGAACGTTTCTTTTGTTATTGATTTTTCTATATTTGAAGTGATACTCTCTAAGATCCCATGAACAGAAGATGTCTCTCAAAGCTCTGCCAGGTTTGGTTATCAAATAAAGATAATTAATTATCTTTGGCATATTTTAGTATGAAACATTGGGAGAAAATTATAGGGGCCAAACAACTTCAATAGCAGATATCGCTTTTTCAACAAACTAAGTTAGGCAACATATTATGATGAAACAAACCATCTTCATTCTTTGTTGTTAACATTACAACCGTAATTGTTATAAGTTTCATGGTTTTGAACGTGTTGATATCTTATCCAAGTTATAATTAAATCAATTCTGAAATCCTCTCTCATTCTATGAACAGGTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAGGTATTTTTCTCTTGAAAAGTGTTGCTCAAGGATATGATACATCTTACAAGTCTAGATGTATTCACCAGCAACATGTTCTTCATTATGGTTGTAGTAATAAGTTGGAGTGTGTTTGGACCTGTTATTACTTTATGAATCTTCATCATTCACTCTATTTCCTTAGCTCTAGGCATTCTGTTACTATCTTCTGGAAGTGTCGAAGTGTTGTGAGAATTATGTGTTTTTCTAAAATATTTTGTTTTTAGTTGCTTTACTAGGAAGATTGAGTATCCTGGTTGAATTGTTATGCTTGATATTTGGTCAATCACAATCATGGAGCTCAATCTCATACATGTTACCGAATCATAACATCATGTATCTAAATGAGTTATTAGCCCTTCCCTTTAATAGAACATGTAATGGTGGTCATACTTCCCGGTGTCAAAACTTATCATGGATTGTCGCTTATTTTTTAATTTATTCAGTTGGAGCCTCTTTTGTTACTAGTACCTTAACTTACTTACAAGATAAAGTTGTCTGACTAGTGTCAAGTGTTGTTGCGTTTTCACAGGTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGGGTATATTTCTTTTCCAGGAACTTTTGTATGCTTTTGGCAAATGTTTTTTTTTATTTCCCCGATCAATAAACTAAGTGGAATGTGAATCTCATGTTCTGTAGATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTA</genome_strand>
        <mrna_strand>AGAGCAACAGTCAGGAACTAATAAATAACTGTGTTTCTCACGAGAACAAACTTCATTTTGATGGAGCAGTGGGGAGTATGAGCTTTGTACCGGTTGAGCCTGAGTGGGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGG.....................................................................................................ATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730035" ref_strand="+" ref_description="SGN-E730035 [LA22DD10]">
      <seq>gaacaactccagaagaagcagatactccctacatacaaaaccttaaagacgtagacacagatactaaaggggtcaagtctagtagtaagaattctctcatgaatattaacaagtttgctgctaataaaggtgtgtcattgacagacaatgtggatatggatgaattgagccatgcacttgccaagtgtcttcagagcaacagtcaggaactaataaataactgtgtttctcacgagaacaaacttcattttgatggagcagtggggagtatgagctttgtaccggttgagcctgagtgggaagaggatgatatttactcgatccatcggaaggatgcagtgaagatgacgaggtcggcagcccgacattctaaggctgccagtgaggcctatctcagaggagaccacttatctgcccaacatttttctctaaaagcccaagaagagtgggatgctgctaataggctaaatgcccaggctgcaaaagaaattttgactgcctgcaacggtaagaatgatcaatggacactggacttgcatggtcttcatgcaaaagaggcagttcaagccttacaagaacatttgcaaaagattgaatctcaggtggcacagaataagcgcagctttggagctgctgtctcttttgatgtggagaatgagagcaaagggtcccacctattgaataagcagcggccagctttcttagaggtcataacaggtaaaggtattcatagccggggacaagctgcacttccaatggctataagaagctttctcgtggagaagggatatcgttatgaggagacaaggcccggggtgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="51948" stop="48892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51648" g_stop="51297" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51296" i_stop="50313" i_length="984">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50312" g_stop="49948" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="717" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49947" i_stop="49398" i_length="550">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49397" g_stop="49328" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="787" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49327" i_stop="49227" i_length="101">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49226" g_stop="49192" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="822" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E730035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51648" e_stop="51297"/>
          <exon e_start="50312" e_stop="49948"/>
          <exon e_start="49397" e_stop="49328"/>
          <exon e_start="49226" e_stop="49192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAACTCCAGAAGAAGCAGATACTCCCTACATACAAAACCTTAAAGACGTAGACACAGATACTAAAGGGGTCAAGTCTAGTAGTAAGAATTCTCTCATGAATATTAACAAGTTTGCTGCTAATAAAGGTGTGTCATTGACAGACAATGTGGATATGGATGAATTGAGCCATGCACTTGCCAAGTGTCTTCAGAGCAACAGTCAGGAACTAATAAATAACTGTGTTTCTCACGAGAACAAACTTCATTTTGATGGAGCAGTGGGGAGTATGAGCTTTGTACCGGTTGAGCCTGAGTGGGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAGGTAGATTTACTTGCACTTGTCTATACGCGTTTACCTTTTCAGTGAAAACATGATTGATTTACATTTTCCCTGCTTCCCTGTCTTCTTTTAATTTCATTTAAGATTGCAAGGATAGTTTATACTGACGATAAGGACAACTTTATCAGTGAGGGTCAAGCATTGGCTGGGTTTCATTCAGGCCAGTAATTTCACCAAATTATTAAAACTCTGATTCTTTTATTGAAAATTTGAGCCATTTACCAATTTGAGGGAATCGAAAAGAAATATGATTACATTCATGAGAGGAAAAGGAACTCCAACAACTTTCCCATCTTCCCTCCTTTCATTTACCATGGTCAGTAGTAACACCTTTTTAAGTAAATAGAGAATAATGTGGAAAGTTGGGATGCAGACAGTTTGCAGCTAAAGTTCAATGACAACCCACAGTTTACATAGCCCACTATTTGAATATCTAAAGTTTCCTTAATCTAATTGCTGCAGGTACCTAGTGGGTAATATATTTAAAATTCTGCCAGGGTAAATCAGGACAGTAAAGACTGGTAGACTGAGTCTGTTTTCCATGAAAGGGTATTTTAGTATCTTTTATATTATGCATAAATGGAAGACAGTGGTAGTTGGTGAACGTTTCTTTTGTTATTGATTTTTCTATATTTGAAGTGATACTCTCTAAGATCCCATGAACAGAAGATGTCTCTCAAAGCTCTGCCAGGTTTGGTTATCAAATAAAGATAATTAATTATCTTTGGCATATTTTAGTATGAAACATTGGGAGAAAATTATAGGGGCCAAACAACTTCAATAGCAGATATCGCTTTTTCAACAAACTAAGTTAGGCAACATATTATGATGAAACAAACCATCTTCATTCTTTGTTGTTAACATTACAACCGTAATTGTTATAAGTTTCATGGTTTTGAACGTGTTGATATCTTATCCAAGTTATAATTAAATCAATTCTGAAATCCTCTCTCATTCTATGAACAGGTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAGGTATTTTTCTCTTGAAAAGTGTTGCTCAAGGATATGATACATCTTACAAGTCTAGATGTATTCACCAGCAACATGTTCTTCATTATGGTTGTAGTAATAAGTTGGAGTGTGTTTGGACCTGTTATTACTTTATGAATCTTCATCATTCACTCTATTTCCTTAGCTCTAGGCATTCTGTTACTATCTTCTGGAAGTGTCGAAGTGTTGTGAGAATTATGTGTTTTTCTAAAATATTTTGTTTTTAGTTGCTTTACTAGGAAGATTGAGTATCCTGGTTGAATTGTTATGCTTGATATTTGGTCAATCACAATCATGGAGCTCAATCTCATACATGTTACCGAATCATAACATCATGTATCTAAATGAGTTATTAGCCCTTCCCTTTAATAGAACATGTAATGGTGGTCATACTTCCCGGTGTCAAAACTTATCATGGATTGTCGCTTATTTTTTAATTTATTCAGTTGGAGCCTCTTTTGTTACTAGTACCTTAACTTACTTACAAGATAAAGTTGTCTGACTAGTGTCAAGTGTTGTTGCGTTTTCACAGGTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGGGTATATTTCTTTTCCAGGAACTTTTGTATGCTTTTGGCAAATGTTTTTTTTTATTTCCCCGATCAATAAACTAAGTGGAATGTGAATCTCATGTTCTGTAGATATCGTTATGAGGAGACAAGGCCCGGGGTGATCA</genome_strand>
        <mrna_strand>GAACAACTCCAGAAGAAGCAGATACTCCCTACATACAAAACCTTAAAGACGTAGACACAGATACTAAAGGGGTCAAGTCTAGTAGTAAGAATTCTCTCATGAATATTAACAAGTTTGCTGCTAATAAAGGTGTGTCATTGACAGACAATGTGGATATGGATGAATTGAGCCATGCACTTGCCAAGTGTCTTCAGAGCAACAGTCAGGAACTAATAAATAACTGTGTTTCTCACGAGAACAAACTTCATTTTGATGGAGCAGTGGGGAGTATGAGCTTTGTACCGGTTGAGCCTGAGTGGGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGG.....................................................................................................ATATCGTTATGAGGAGACAAGGCCCGGGGTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306770" ref_strand="+" ref_description="SGN-E306770 [cLEY-11-C5]">
      <seq>agcctgagagagaaaccttccccagcttatccgttccgcccacttacttaaggggtccatctcaaagcatcgcaaagaacagtggagcaactctagagaagcctttttcatccttgctgctaccgtctgtaagttttccatcgttaatggctactaaagagtctgatgcaaatcatagtcaagttggcgattcttgtttcaaccagactgatggttttatccgagaaagaggttttctagaggtgtgtcgaaagctgaaagagctccagccatgggctgatgacaccttgatcgcagatgtcttggctggtgtaaatgatttcaataaggccttgacattgttggatgcaatggtatctcctgatcatacatatgttgcacatgacaacagaacaactccagaagaagcagatactccctacatacaaaaccttaaagacgtagacacagatactaaaggggtcaagtctagtagtaagaattctctcatgaatattaacaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="52338" stop="51233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52038" g_stop="51533" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E306770" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52038" e_stop="51533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTGAGAGAGAAACCTTCCCCAACTTATCCGTTCCGCCCACTTCCTTAAGGGGTCCATCTCAAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTGCTGCTACCGTCTGTAAGTTTTCCATCGTTAATGGCTACTAAAGAGTCTGATGCAAATCATAGTCAAGTTGGCGATTCTTGTTTCAACCAGACTGATGGTTTTATCCGAGAAAGAGGTTTTCTAGAGGTGTGTCGAAAGCTGAAAGAGCTCCAGCCATGGGCTGATGACACCTTGATCGCAGATGTCTTGGCTGGTGTAAATGATTTCAATAAGGCCTTGACATTGTTGGATGCAATGGTATCTCCTGATCATACATATGTTGCACATGACAACAGAACAACTCCAGAAGAAGCAGATACTCCCTACATACAAAACCTTAAAGACGTAGACACAGATACTAAAGGGGTCAAGTCTAGTAGTAAGAATTCTCTCATGAATATTAACAAGTTT</genome_strand>
        <mrna_strand>AGCCTGAGAGAGAAACCTTCCCCAGCTTATCCGTTCCGCCCACTTACTTAAGGGGTCCATCTCAAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTGCTGCTACCGTCTGTAAGTTTTCCATCGTTAATGGCTACTAAAGAGTCTGATGCAAATCATAGTCAAGTTGGCGATTCTTGTTTCAACCAGACTGATGGTTTTATCCGAGAAAGAGGTTTTCTAGAGGTGTGTCGAAAGCTGAAAGAGCTCCAGCCATGGGCTGATGACACCTTGATCGCAGATGTCTTGGCTGGTGTAAATGATTTCAATAAGGCCTTGACATTGTTGGATGCAATGGTATCTCCTGATCATACATATGTTGCACATGACAACAGAACAACTCCAGAAGAAGCAGATACTCCCTACATACAAAACCTTAAAGACGTAGACACAGATACTAAAGGGGTCAAGTCTAGTAGTAAGAATTCTCTCATGAATATTAACAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359269" ref_strand="+" ref_description="SGN-E359269 [cLHT-31-K11]">
      <seq>aattttttatatgcgaagagaactcccaaagtttactctttcagtaaagctgtcatttttttaataatccggagccaaaacttaaacttgaattaaggagacactaattaaattatagccaagaagaggtggtggtgtggcttgaaatgatttaagtgctttcaatgtcaacttaagatggctgcttctacgagtgtgacaagtcctctacataagaagatgtctgagaggagggctaagacttctggttgggctgcatttgaccttaatgagagactgaagcaacaaaatcttgagccagagcctgagagagaaaccttccccaacttatccgttccgcccacttccttaaggggtccatctcgaagcatcgcaaagaacagtggagcaactctagagaagcctttttcatccttgctgctaccgtctgtaagttttccatcgttaatggctactaaagagtctgatgcaaatcatagtcaagttggcgattcttgtttcaaccagactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="54509" stop="51528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54208" g_stop="54178" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54177" i_stop="52309" i_length="1869">
            <donor d_prob="0.865" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52308" g_stop="51828" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="512" r_length="481" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E359269" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54208" e_stop="54178"/>
          <exon e_start="52308" e_stop="51828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTATATGCGAAGAGAACTCCCAAAGGTATATTGACGATTTTGCCCTTGATTCCTGCTAACATGTGTTTACGAAGAATTGTTTTTCTTAAACTGAAGGTTGGATTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATCAATTAAGATGGGCATTATGGTAAAGTATTCATATTAATCATTGTTTCTTAAGAGACGTGTAAAGTCTTAAAAGTGGATAACTAAAAGTGAATGAAGGGAATACTTGATATTTTCCTAAAGTTAAGCTAAAGTTTGGATTCTTACTGCTAAAAAAAAGGTTGGATGTTTACTGTTTCTGAATGATTGCTAAGGAACTGAAGTCCTTAGAGATTTGAAATCTTACTGTAGGTGGTTATTGAAGGACATGAAAGTTTTGAACAGGAATACAAAATTGATTGTAGTTCTCCTAAAAGTGAGCTAAAGGTTGGATTTTTACTACTTTCAAAAAAAAAAAGTAGAAAGGTAGAGATGGTTGGATTTTCAGCTTCTAAGTGATGCAAACATTTTGTGTCGTTAAAAATTTTAATTTTACTGAAGGTGATTGTAGGAGGACATGAAGATTTCGAACAGGAATATTGTTAATGTAGTTTTCGTAAATTTGTAGCTAAAGGTTGGATTTTACAGCTTCTTAGTGATACAAAGGTTTTGAGATGGTTAGAAAATTAAACTTTACTGAAGGTGATTATTGTACGGCATCAAGATTTTGAACAGAAATACATGTTAATTATGGTTTTCCTAAATTTTTAGCTTAACGTTGGATTTTCTGCTTCTGAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGATATTAAAAAGGAAAAAAAAAAGTAGACTGATCTAAAGTGGAGAGCTTATGATAGTTGGTGGTTTGGAATGAACCTTCATAGTTAAACATCATTTTTCAACCAGCCTTATTGCTTGTATTATCTTTCATTTGAAATTTGATGGTGGGATTTTTGTGCAGTTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCTTGAGCCAGAGCCTGAGAGAGAAACCTTCCCCAACTTATCCGTTCCGCCCACTTCCTTAAGGGGTCCATCTCAAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTGCTGCTACCGTCTGTAAGTTTTCCATCGTTAATGGCTACTAAAGAGTCTGATGCAAATCATAGTCAAGTTGGCGATTCTTGTTTCAACCAGACTGA</genome_strand>
        <mrna_strand>AATTTTTTATATGCGAAGAGAACTCCCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTCTTTCAGTAAAGCTGTCATTTTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGAGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTTAATGAGAGACTGAAGCAACAAAATCTTGAGCCAGAGCCTGAGAGAGAAACCTTCCCCAACTTATCCGTTCCGCCCACTTCCTTAAGGGGTCCATCTCGAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTGCTGCTACCGTCTGTAAGTTTTCCATCGTTAATGGCTACTAAAGAGTCTGATGCAAATCATAGTCAAGTTGGCGATTCTTGTTTCAACCAGACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286872" ref_strand="+" ref_description="SGN-E286872 [cLES-14-D24]">
      <seq>tctcagctctctaatccttcatatactcctttcaccccgtggatacgatacctccggttcagtttttcctgatttatcttacaatttttttatatgcgaagagaactcccaaagtttactctttcagtaaagctgtcattgttttaataatccggagccaaaacttaaacttgaattaaggagacactaattaaattatagccaagaagaggtggtggtgtggcttgaaatgatttaagtgctttcaatgtcaacttaagatggctgcttctacgagtgtgacaagtcctctacataagaagatgtctgggaggagggctaagacttctggttgggctgcatttgacctcaatgagagactgaagcaacaaaatcttgagccagagcctgagagagaaaccttccccaacttatccgttccgcccacttccttaaggggtccatctcaaagcatcgcaaagaacagtggagcaactctagagaagcctttttcatccttgctgctaccgtctgtaagttttccatcgttaatggctactaaagagtctgatgcaaatcatagtcaagttggcgattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="54591" stop="51544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54291" g_stop="54178" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54177" i_stop="52309" i_length="1869">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52308" g_stop="51844" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="579" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E286872" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54291" e_stop="54178"/>
          <exon e_start="52308" e_stop="51844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAGGTATATTGACGATTTTGCCCTTGATTCCTGCTAACATGTGTTTACGAAGAATTGTTTTTCTTAAACTGAAGGTTGGATTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATCAATTAAGATGGGCATTATGGTAAAGTATTCATATTAATCATTGTTTCTTAAGAGACGTGTAAAGTCTTAAAAGTGGATAACTAAAAGTGAATGAAGGGAATACTTGATATTTTCCTAAAGTTAAGCTAAAGTTTGGATTCTTACTGCTAAAAAAAAGGTTGGATGTTTACTGTTTCTGAATGATTGCTAAGGAACTGAAGTCCTTAGAGATTTGAAATCTTACTGTAGGTGGTTATTGAAGGACATGAAAGTTTTGAACAGGAATACAAAATTGATTGTAGTTCTCCTAAAAGTGAGCTAAAGGTTGGATTTTTACTACTTTCAAAAAAAAAAAGTAGAAAGGTAGAGATGGTTGGATTTTCAGCTTCTAAGTGATGCAAACATTTTGTGTCGTTAAAAATTTTAATTTTACTGAAGGTGATTGTAGGAGGACATGAAGATTTCGAACAGGAATATTGTTAATGTAGTTTTCGTAAATTTGTAGCTAAAGGTTGGATTTTACAGCTTCTTAGTGATACAAAGGTTTTGAGATGGTTAGAAAATTAAACTTTACTGAAGGTGATTATTGTACGGCATCAAGATTTTGAACAGAAATACATGTTAATTATGGTTTTCCTAAATTTTTAGCTTAACGTTGGATTTTCTGCTTCTGAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGATATTAAAAAGGAAAAAAAAAAGTAGACTGATCTAAAGTGGAGAGCTTATGATAGTTGGTGGTTTGGAATGAACCTTCATAGTTAAACATCATTTTTCAACCAGCCTTATTGCTTGTATTATCTTTCATTTGAAATTTGATGGTGGGATTTTTGTGCAGTTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCTTGAGCCAGAGCCTGAGAGAGAAACCTTCCCCAACTTATCCGTTCCGCCCACTTCCTTAAGGGGTCCATCTCAAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTGCTGCTACCGTCTGTAAGTTTTCCATCGTTAATGGCTACTAAAGAGTCTGATGCAAATCATAGTCAAGTTGGCGATTCTT</genome_strand>
        <mrna_strand>TCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCTTGAGCCAGAGCCTGAGAGAGAAACCTTCCCCAACTTATCCGTTCCGCCCACTTCCTTAAGGGGTCCATCTCAAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTGCTGCTACCGTCTGTAAGTTTTCCATCGTTAATGGCTACTAAAGAGTCTGATGCAAATCATAGTCAAGTTGGCGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248932" ref_strand="+" ref_description="SGN-E248932 [cLEF-49-P15]">
      <seq>gagcttatgatagttggtggtttggaatgaaccttcatagttaaacatcatttttcaaccagccttattgcttgtattatctttcatttgaaatttgatggtgggatttttgtgcagtttactctttcagtaaagctgtcattgttttaataatccggagccaaaacttaaacttgaattaaggagacactaattaaattatagccaagaagaggtggtggtgtggcttgaaatgatttaagtgctttcaatgtcaacttaagatggctgcttctacgagtgtgacaagtcctctacataagaagatgtctgggaggagggctaagacttctggttgggctgcatttgacctcaatgagagactgaagcaacaaaatcttgagccagagcctgagagagaaaccttccccaacttatccgttccgcccacttccttaaggggtccatctcaaagcatcgcaaagaacagtggagcaactctagagaagcctttttcatccttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="52725" stop="51620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52425" g_stop="51920" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E248932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52425" e_stop="51920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTATGATAGTTGGTGGTTTGGAATGAACCTTCATAGTTAAACATCATTTTTCAACCAGCCTTATTGCTTGTATTATCTTTCATTTGAAATTTGATGGTGGGATTTTTGTGCAGTTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCTTGAGCCAGAGCCTGAGAGAGAAACCTTCCCCAACTTATCCGTTCCGCCCACTTCCTTAAGGGGTCCATCTCAAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTGCTG</genome_strand>
        <mrna_strand>GAGCTTATGATAGTTGGTGGTTTGGAATGAACCTTCATAGTTAAACATCATTTTTCAACCAGCCTTATTGCTTGTATTATCTTTCATTTGAAATTTGATGGTGGGATTTTTGTGCAGTTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCTTGAGCCAGAGCCTGAGAGAGAAACCTTCCCCAACTTATCCGTTCCGCCCACTTCCTTAAGGGGTCCATCTCAAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266376" ref_strand="+" ref_description="SGN-E266376 [cLEI-3-C12]">
      <seq>ttatcctctccattttcttcctttttttcaatttctcatttcttctggacgatcgccggagactcaatcggaaaattcaccaactgtttatggattgcagaagcagatccctatcagcatcgccgtccgccgtctccgccgccgtcaacaacaaatatccgattcttcagttttcatctcagctctctaatccttcatatactcctttcaccccgtggatacgatacctccggttcagtttttcctgatttatcttacaatttttttatatgcgaagagaactcccaaagtttactctttcagtaaagctgtcattgttttaataatccggagccaaaacttaaacttgaattaaggagacactaattaaattatagccaagaagaggtggtggtgtggcttgaaatgatttaagtgctttcaatgtcaacttaagatggctgcttctacgagtgtgacaagtcctctacataagaagatgtctgggaggagggctaagacttctggttgggctgcatttgacctcaatgagagactgaagcaacaaaatcttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="54767" stop="51743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54467" g_stop="54178" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54177" i_stop="52309" i_length="1869">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52308" g_stop="52043" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="556" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E266376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54467" e_stop="54178"/>
          <exon e_start="52308" e_stop="52043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCTCTCCATTTTCTTCCTTTTTTTCAATTTCTCATTTCTTCTGGACGATCGCCGGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAGGTATATTGACGATTTTGCCCTTGATTCCTGCTAACATGTGTTTACGAAGAATTGTTTTTCTTAAACTGAAGGTTGGATTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATCAATTAAGATGGGCATTATGGTAAAGTATTCATATTAATCATTGTTTCTTAAGAGACGTGTAAAGTCTTAAAAGTGGATAACTAAAAGTGAATGAAGGGAATACTTGATATTTTCCTAAAGTTAAGCTAAAGTTTGGATTCTTACTGCTAAAAAAAAGGTTGGATGTTTACTGTTTCTGAATGATTGCTAAGGAACTGAAGTCCTTAGAGATTTGAAATCTTACTGTAGGTGGTTATTGAAGGACATGAAAGTTTTGAACAGGAATACAAAATTGATTGTAGTTCTCCTAAAAGTGAGCTAAAGGTTGGATTTTTACTACTTTCAAAAAAAAAAAGTAGAAAGGTAGAGATGGTTGGATTTTCAGCTTCTAAGTGATGCAAACATTTTGTGTCGTTAAAAATTTTAATTTTACTGAAGGTGATTGTAGGAGGACATGAAGATTTCGAACAGGAATATTGTTAATGTAGTTTTCGTAAATTTGTAGCTAAAGGTTGGATTTTACAGCTTCTTAGTGATACAAAGGTTTTGAGATGGTTAGAAAATTAAACTTTACTGAAGGTGATTATTGTACGGCATCAAGATTTTGAACAGAAATACATGTTAATTATGGTTTTCCTAAATTTTTAGCTTAACGTTGGATTTTCTGCTTCTGAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGATATTAAAAAGGAAAAAAAAAAGTAGACTGATCTAAAGTGGAGAGCTTATGATAGTTGGTGGTTTGGAATGAACCTTCATAGTTAAACATCATTTTTCAACCAGCCTTATTGCTTGTATTATCTTTCATTTGAAATTTGATGGTGGGATTTTTGTGCAGTTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCTTGAG</genome_strand>
        <mrna_strand>TTATCCTCTCCATTTTCTTCCTTTTTTTCAATTTCTCATTTCTTCTGGACGATCGCCGGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212052" ref_strand="+" ref_description="SGN-E212052 [cLEC-66-P14]">
      <seq>tgaattcttcttcttctttatcctctccattttcttcctttttttcaatttctcatttcttctggacgatcgccggagactcaatcggaaaattcaccaactgtttatggattgcagaagcagatccctatcagcatcgccgtccgccgtctccgccgccgtcaacaacaaatatccgattcttcagttttcatctcagctctctaatccttcatatactcctttcaccccgtggatacgatacctccggttcagtttttcctgatttatcttacaatttttttatatgcgaagagaactcccaaagtttactctttcagtaaagctgtcattgttttaataatccggagccaaaacttaaacttgaattaaggagacactaattaaattatagccaagaagaggtggtggtgtggcttgaaatgatttaagtgctttcaatgtcaacttaagatggctgcttctacgagtgtgacaagtcctctacataagaagatgtctgggaggagggctaagacttctggttgggctgcatttgacctcaatgagagactgaagcaacaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="54784" stop="51747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54484" g_stop="54178" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54177" i_stop="52309" i_length="1869">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52308" g_stop="52047" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="569" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E212052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54484" e_stop="54178"/>
          <exon e_start="52308" e_stop="52047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCTTCTTCTTCTTTATCCTCTCCATTTTCTTCCTTTTTTTCAATTTCTCATTTCTTCTGGACGATCGCCGGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAGGTATATTGACGATTTTGCCCTTGATTCCTGCTAACATGTGTTTACGAAGAATTGTTTTTCTTAAACTGAAGGTTGGATTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATCAATTAAGATGGGCATTATGGTAAAGTATTCATATTAATCATTGTTTCTTAAGAGACGTGTAAAGTCTTAAAAGTGGATAACTAAAAGTGAATGAAGGGAATACTTGATATTTTCCTAAAGTTAAGCTAAAGTTTGGATTCTTACTGCTAAAAAAAAGGTTGGATGTTTACTGTTTCTGAATGATTGCTAAGGAACTGAAGTCCTTAGAGATTTGAAATCTTACTGTAGGTGGTTATTGAAGGACATGAAAGTTTTGAACAGGAATACAAAATTGATTGTAGTTCTCCTAAAAGTGAGCTAAAGGTTGGATTTTTACTACTTTCAAAAAAAAAAAGTAGAAAGGTAGAGATGGTTGGATTTTCAGCTTCTAAGTGATGCAAACATTTTGTGTCGTTAAAAATTTTAATTTTACTGAAGGTGATTGTAGGAGGACATGAAGATTTCGAACAGGAATATTGTTAATGTAGTTTTCGTAAATTTGTAGCTAAAGGTTGGATTTTACAGCTTCTTAGTGATACAAAGGTTTTGAGATGGTTAGAAAATTAAACTTTACTGAAGGTGATTATTGTACGGCATCAAGATTTTGAACAGAAATACATGTTAATTATGGTTTTCCTAAATTTTTAGCTTAACGTTGGATTTTCTGCTTCTGAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGATATTAAAAAGGAAAAAAAAAAGTAGACTGATCTAAAGTGGAGAGCTTATGATAGTTGGTGGTTTGGAATGAACCTTCATAGTTAAACATCATTTTTCAACCAGCCTTATTGCTTGTATTATCTTTCATTTGAAATTTGATGGTGGGATTTTTGTGCAGTTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCT</genome_strand>
        <mrna_strand>TGAATTCTTCTTCTTCTTTATCCTCTCCATTTTCTTCCTTTTTTTCAATTTCTCATTTCTTCTGGACGATCGCCGGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369584" ref_strand="+" ref_description="SGN-E369584 [TUS-25-L14]">
      <seq>gagcttatgatagttggtggtttggaatgaaccttcatagttaaacatcatttttcaaccagccttattgcttgtattatctttcatttgaaatttgatggtgggatttttgtgcagtttactctttcagtaaagctgtcattgttttaataatccggagccaaaacttaaacttgaattaaggagacactaattaaattatagccaagaataggtggtggtgtggcttgaaatgatttaagtgctttcaatgttaacttaagatgtctgcttctaccagtgtgacaagtcctctacattagaagatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="52725" stop="51816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52425" g_stop="52116" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E369584" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52425" e_stop="52116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTATGATAGTTGGTGGTTTGGAATGAACCTTCATAGTTAAACATCATTTTTCAACCAGCCTTATTGCTTGTATTATCTTTCATTTGAAATTTGATGGTGGGATTTTTGTGCAGTTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTC</genome_strand>
        <mrna_strand>GAGCTTATGATAGTTGGTGGTTTGGAATGAACCTTCATAGTTAAACATCATTTTTCAACCAGCCTTATTGCTTGTATTATCTTTCATTTGAAATTTGATGGTGGGATTTTTGTGCAGTTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAATAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTTAACTTAAGATGTCTGCTTCTACCAGTGTGACAAGTCCTCTACATTAGAAGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364262" ref_strand="+" ref_description="SGN-E364262 [cLPP-20-K7]">
      <seq>ggagattcaatcggaaaattcaccaactgtttatggattgcagaagcagatccctatcagcatcgccgtccgccttctccgccgccgtcaacaaccaatatccgattcttcagttttcatctcagctctctaatccttcatatactcctttcaccccgtggatacgatacctccggttcagtttttcctgatttatctttcaattttttttatgcgaagagaactcccaaagttttgaactctttcagtaaagctgtcatttttttaataatccggagccaaaacttaaacttgaattaaggagacactaattaaattatagccaagaagaggtggtggtgtggcacttgaaatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="54710" stop="51899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54410" g_stop="54178" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54177" i_stop="53082" i_length="1096">
            <donor d_prob="0.865" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53081" g_stop="53076" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="235" r_length="4" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53075" i_stop="52309" i_length="767">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52308" g_stop="52187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="359" r_length="124" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E364262" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54410" e_stop="54178"/>
          <exon e_start="53081" e_stop="53076"/>
          <exon e_start="52308" e_stop="52187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAGGTATATTGACGATTTTGCCCTTGATTCCTGCTAACATGTGTTTACGAAGAATTGTTTTTCTTAAACTGAAGGTTGGATTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATCAATTAAGATGGGCATTATGGTAAAGTATTCATATTAATCATTGTTTCTTAAGAGACGTGTAAAGTCTTAAAAGTGGATAACTAAAAGTGAATGAAGGGAATACTTGATATTTTCCTAAAGTTAAGCTAAAGTTTGGATTCTTACTGCTAAAAAAAAGGTTGGATGTTTACTGTTTCTGAATGATTGCTAAGGAACTGAAGTCCTTAGAGATTTGAAATCTTACTGTAGGTGGTTATTGAAGGACATGAAAGTTTTGAACAGGAATACAAAATTGATTGTAGTTCTCCTAAAAGTGAGCTAAAGGTTGGATTTTTACTACTTTCAAAAAAAAAAAGTAGAAAGGTAGAGATGGTTGGATTTTCAGCTTCTAAGTGATGCAAACATTTTGTGTCGTTAAAAATTTTAATTTTACTGAAGGTGATTGTAGGAGGACATGAAGATTTCGAACAGGAATATTGTTAATGTAGTTTTCGTAAATTTGTAGCTAAAGGTTGGATTTTACAGCTTCTTAGTGATACAAAGGTTTTGAGATGGTTAGAAAATTAAACTTTACTGAAGGTGATTATTGTACGGCATCAAGATTTTGAACAGAAATACATGTTAATTATGGTTTTCCTAAATTTTTAGCTTAACGTTGGATTTTCTGCTTCTGAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGATATTAAAAAGGAAAAAAAAAAGTAGACTGATCTAAAGTGGAGAGCTTATGATAGTTGGTGGTTTGGAATGAACCTTCATAGTTAAACATCATTTTTCAACCAGCCTTATTGCTTGTATTATCTTTCATTTGAAATTTGATGGTGGGATTTTTGTGCAGTTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGG--CTTGAAATGATTT</genome_strand>
        <mrna_strand>GGAGATTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCTTCTCCGCCGCCGTCAACAACCAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTTCAATTTTTTT-TATGCGAAGAGAACTCCCAAA-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--TT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCTTTCAGTAAAGCTGTCATTTTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCACTTGAAATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224537" ref_strand="+" ref_description="SGN-E224537 [cLEL-27-I13](-)">
      <seq>aaaattaaactttactgaaggtgattattgtacggcatcaagattttgaacagaaatacatgttaattatggttttcctaaatttttagcttaacgttggattttctgcttctgaatgctgcaataagtttgaaaatgtagaaagttcatgtttttactaaaattattgtaggagataagctttgtaaaaattgttttttacttttatgtacaagtggagaggtagataccatacaatgttttaattggatcggattactcaaattaatttgcatcgtggtaactgatcaaaaggtcacaagtggaagtcctagtggttgaggtggggactaactacctagagatttcaagttttaatcctagcttgaacacttgatgagttcacctgatctaaccttggtgagcatgatcacatcaaaaacctatgcttgtcggttggacaggctgtttgttgaattaatcatgtgggcacaagctagccgcgacaccatagatattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="53260" stop="52146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52960" g_stop="52445" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E224537" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52960" e_stop="52445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAACTTTACTGAAGGTGATTATTGTACGGCATCAAGATTTTGAACAGAAATACATGTTAATTATGGTTTTCCTAAATTTTTAGCTTAACGTTGGATTTTCTGCTTCTGAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGATATTAAAAAGGAAAAAAAAAAG</genome_strand>
        <mrna_strand>AAAATTAAACTTTACTGAAGGTGATTATTGTACGGCATCAAGATTTTGAACAGAAATACATGTTAATTATGGTTTTCCTAAATTTTTAGCTTAACGTTGGATTTTCTGCTTCTGAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGATATTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224757" ref_strand="+" ref_description="SGN-E224757 [cLEL-27-I13](-)">
      <seq>gaatgctgcaataagtttgaaaatgtagaaagttcatgtttttactaaaattattgtaggagataagctttgtaaaaattgttttttacttttatgtacaagtggagaggtagataccatacaatgttttaattggatcggattactcaaattaatttgcatcgtggtaactgatcaaaaggtcacaagtggaagtcctagtggttgaggtggggactaactacctagagatttcaagttttaatcctagcttgaacacttgatgagttcacctgatctaaccttggtgagcatgatcacatcaaaaacctatgcttgtcggttggacaggctgtttgttgaattaatcatgtgggcacaagctagccgcgacaccatagaccttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="53147" stop="52146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52847" g_stop="52445" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E224757" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52847" e_stop="52445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGATATTAAAAAGGAAAAAAAAAAG</genome_strand>
        <mrna_strand>GAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGACCTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273533" ref_strand="+" ref_description="SGN-E273533 [cLEN-6-M13]">
      <seq>ggctttgattaggaacatatattactctctctgtttacttttacttgtgtgctttcaaataattgtttttcactttaatttggcacttttaacctatattgcttggactctccaaaaattgcagccgcacccgtgttggatcctctaaaaagaggatctgacatgcacccagtaaaatgtttgaagaggccgagcaacatagcttttaacatattaagaaaagacattcccttggtgttaatcacttattccccaaattatttttcaagaccttatactaaacatcaattaagatgggcattatggtaaagtattcatattaatcattgtttcttaagagacgtgtaaagtcttaaaagtggataactaaaagtgaatgaagggaatacttgatattttcctaaagttaagctaaagtttggattcttactgctaaaaaaaaggttggatgtttactgtttctgaatgattgctaaggaactgaagtccttagagatttgaaatcttactgtaggtggttattgaaggacatgaaagttttgaacaggaatacaaaattgattgtagttctcctaaaagtgagctaaaggttggatttttactactttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="54084" stop="52866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53784" g_stop="53166" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E273533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53784" e_stop="53166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATCAATTAAGATGGGCATTATGGTAAAGTATTCATATTAATCATTGTTTCTTAAGAGACGTGTAAAGTCTTAAAAGTGGATAACTAAAAGTGAATGAAGGGAATACTTGATATTTTCCTAAAGTTAAGCTAAAGTTTGGATTCTTACTGCTAAAAAAAAGGTTGGATGTTTACTGTTTCTGAATGATTGCTAAGGAACTGAAGTCCTTAGAGATTTGAAATCTTACTGTAGGTGGTTATTGAAGGACATGAAAGTTTTGAACAGGAATACAAAATTGATTGTAGTTCTCCTAAAAGTGAGCTAAAGGTTGGATTTTTACTACTTTCAAAAAAAAAA</genome_strand>
        <mrna_strand>GGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATCAATTAAGATGGGCATTATGGTAAAGTATTCATATTAATCATTGTTTCTTAAGAGACGTGTAAAGTCTTAAAAGTGGATAACTAAAAGTGAATGAAGGGAATACTTGATATTTTCCTAAAGTTAAGCTAAAGTTTGGATTCTTACTGCTAAAAAAAAGGTTGGATGTTTACTGTTTCTGAATGATTGCTAAGGAACTGAAGTCCTTAGAGATTTGAAATCTTACTGTAGGTGGTTATTGAAGGACATGAAAGTTTTGAACAGGAATACAAAATTGATTGTAGTTCTCCTAAAAGTGAGCTAAAGGTTGGATTTTTACTACTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274530" ref_strand="+" ref_description="SGN-E274530 [cLEN-11-P5]">
      <seq>tttttactgctttatcaacaaaaaaacaaaggaaaaattggagtttagttgtttctgaatggtataaaggttttgtatgttgtaggaattcgtttattttataactgtgttgtttgggccatcctgtgcacacctagactacggatacctccatcgacaacatacaccataagtaacctagaacaaatagaaagaaatcaccttgtgtttagtttctgaaaccttgtcgatctcaatggagtcctctaagtcacacccttaggttaagctttaagaaattataagtttagtgaagctgataactattggacattaaggctttgattaggaacatatattactctctctgtttacttttacttgtgcgctttcaaataattggttttcactttaatttggcacttttaacctatattgcttggactctccaaaaattgcagccgcacccgtgttggatcctctaaaaagaggatctgacatgcacccagtaaaatgtttgaagaggccgcgcaacatagctcttaacatattaagaaaagacattcccttggtgttaatcacttattccccaaattatttttcaagaccttatactaaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="54400" stop="53199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54100" g_stop="53499" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E274530" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54100" e_stop="53499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATC</genome_strand>
        <mrna_strand>TTTTTACTGCTTTATCAACAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGCGCTTTCAAATAATTGGTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGCGCAACATAGCTCTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298077" ref_strand="+" ref_description="SGN-E298077 [cLEW-12-G9]">
      <seq>aaacaaaggaaaaattggagtttagttgtttctgaatggtataaaggttttgtatgttgtaggaattcgtttattttataactgtgttgtttgggccatcctgtgcaccaccctagactacggatatctccatcgacaacatacaccataagtaacctagaacaaatagaaagaaatcaccttgtgtttagtttctgaaaccttgtcgatctcaatggagtcctctaagtcacacccttaggttaagctttaagaaattataagtttagtgaagctgataactattggacattaaggctttgattaggaacatatattactctctctgtttacttttacttgtgtgctttcaaataattgtttttcactttaatttggcacttttaacctatattgcttggactctccaaaaattgcagccgcacccgtgttggatcctctaaaaagaggatctgacatgcacccagtaaaatgtttgaagaggccgagcaacatagcttttaacatattaagaaaagacattcccttggtgttaatcacttattccccaaattatttttcaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="54377" stop="53214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54077" g_stop="53514" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E298077" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54077" e_stop="53514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCA-CA-CCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGAC</genome_strand>
        <mrna_strand>AAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACCACCCTAGACTACGGATATCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274531" ref_strand="+" ref_description="SGN-E274531 [cLEN-11-P7]">
      <seq>tttttactgctttatcaaaaaaaaaacaaaggaaaaattggagtttagttgtttctgaatggtataaaggttttgtatgttgtaggaattcgtttattttataactgtgttgtttgggccatcctgtgcacacctagactacggatacctccatcgacaacatacaccataagtaacctagaacaaatagaaagaaatcaccttgtgtttagtttctgaaaccttgtcgatctcaatggagtcctctaagtcacacccttaggttaagctttaagaaattataagtttagtgaagctgataactattggacattaaggctttgattaggaacatatattactctctctgtttacttttacttgtgtgctttcaaataattgtttttcactttaatttggcacttttaacctatattgcttggactctccaaaaattgcagccgcacccgtgttggatcctctaaaaagaggatctgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="54400" stop="53320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54100" g_stop="53620" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E274531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54100" e_stop="53620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATG</genome_strand>
        <mrna_strand>TTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274860" ref_strand="+" ref_description="SGN-E274860 [cLEN-13-L8]">
      <seq>ggagactcaatcggaaaattcaccaactgtttatggattgcagaagcagatccctatcagcatcgccgtccgccgtctccgccgccgtcaacaacaaatatccgattcttcagttttcatctcagctctctaatccttcatatactcctttcaccccgtggatacgatacctccggttcagtttttcctgatttatcttacaatttttttatatgcgaagagaactcccaaaggtatattgacgattttgcccttgattcctgctaacatgtgtttacgaagaattgtttttcttaaactgaaggttggatttttactgctttatcaaaaaaaaaacaaaggaaaaattggagtttagttgtttctgaatggtataaaggttttgtatgttgtaggaattcgtttattttataactgtgttgtttgggccatcctgtgcacacctagactacggataccttcatcgacaacatacaccataagtaacctagaacaaatagaaagaaatcaccttgtgtttagtttctgaaaccttgtcgatctcaatggagtcctctaagtcacaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="54710" stop="53543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54410" g_stop="53843" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E274860" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54410" e_stop="53843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAGGTATATTGACGATTTTGCCCTTGATTCCTGCTAACATGTGTTTACGAAGAATTGTTTTTCTTAAACTGAAGGTTGGATTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCC</genome_strand>
        <mrna_strand>GGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAGGTATATTGACGATTTTGCCCTTGATTCCTGCTAACATGTGTTTACGAAGAATTGTTTTTCTTAAACTGAAGGTTGGATTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTTCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249510" ref_strand="+" ref_description="SGN-E249510 [cLEF-56-F13]">
      <seq>tttcttcctttttttcaatttctcatttcttctggacgatcgccggagactcaatcggaaaattcaccaactgtttatggattgcagaagcagatccctatcagcatcgccgtccgccgtctccgccgccgtcaacaacaaatatccgattcttcagttttcatctcagctctctaatccttcatatactcctttcaccccgtggataccgatacctccggttcagtttttcctgatttatcttacaatttttttatatgcgaagagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="54754" stop="53886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54454" g_stop="54186" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E249510" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54454" e_stop="54186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCTTTTTTTCAATTTCTCATTTCTTCTGGACGATCGCCGGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATA-CGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAAC</genome_strand>
        <mrna_strand>TTTCTTCCTTTTTTTCAATTTCTCATTTCTTCTGGACGATCGCCGGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACCGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368947" ref_strand="+" ref_description="SGN-E368947 [TUS-25-H3](-)">
      <seq>cacattcctcaaccttggagcctactcttgctccggtggcggtagagcgcactatgaccactcgagctgcagcttcgaatgcactacgacaacagaggtttgtacgtgaagtgacaattcagttcaacttatgcaatgagccttggctcaaatacagtatcagtgttgttgctgacaagggtctaaaaaaggccctttttacatcttcacgcctgaagaagggagaagttctttacttggaaactcattctaagaggtatgagctctgttttagtggtgaaaagatggttaaggctacaacttctctgatgcatgaaatggatgttgacaaacctcaaagtcacaatttacacatggcaaacggagaaaaaaatggagtgaatggtgagaatacgatggtagatatgttccgactgtctcgttgtaagaagcccctgcctcagaaactaatgcaatcagttggaattcctttgccccttgaacatgttgaggttttggaggagaatctggagtgggaaaacattcaatggtcacaaactggtgtttggattgctggaaaagaatatcctcttactagagcgcattttctttccccaaattaggcaatgctttgtaatagatacagtttattctataagacaaagatgtattgggatttatactgattagaatgataaattgtggaactcatgaacaatgttgttttgtgaacattgtgcatatgttgatttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="70757" stop="67070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70457" g_stop="70381" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70380" i_stop="69403" i_length="978">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69402" g_stop="69335" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="145" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69334" i_stop="68392" i_length="943">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68391" g_stop="68281" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="256" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68280" i_stop="68039" i_length="242">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68038" g_stop="67804" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="491" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67803" i_stop="67613" i_length="191">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67612" g_stop="67360" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="744" r_length="253" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E368947" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70457" e_stop="70381"/>
          <exon e_start="69402" e_stop="69335"/>
          <exon e_start="68391" e_stop="68281"/>
          <exon e_start="68038" e_stop="67804"/>
          <exon e_start="67612" e_stop="67360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTCCTCAACCTTGGAGCCTACTCTTGCTCCGGTGGCGGTAGAGCGCACTATGACCACTCGAGCTGCAGCTTCGGTATTGTTTCACTTAAGTAGAAGTTCATTCTGCTTTCTAAATTTGTTAGTGTTATGTGACAAAAATCAGCTGCTCACTTTCCTTCTCTGGTAGCCTAAAATTGTTTATCATTCTGCTGTTCTCTCTATAAATAGCATAATCAGCTGAAAACCATCTAGGCGGGGACTATTGCTGGCTTTTTTCTCTTTTCGATTTCTGTAGGCTACTGCTAAACCCTTCTGCACTCTAAAGCTGTCAAACTAACATCTAATGGATGTAATCCTATGGATTTAAACAGTTCGACAGAAAAGGATAAACAAAGATAAAGAGGATTCTGGTTTATTCATGGGAACATGATTTTGCCTCAACTGTATTATCAAAAAAATGAGTTTGCCTCAACTATCTTTAAATTTTAAAATAATAACATAAATTAAAATTCTGAAACTTGGAACTTCCTGCATCTATACCTTTTTGGAGTGATCGAATTCCTTCTATATGATTCATCGTATAAACAGCCCAAGTACATCACAGTTGAGTTCGAGATAATACTCGGTCTTTATACATCATGTTATCATCTTATCTTCATTTTCTGTGAGATGTATTATGCTGCGACTATTTAGGATTAAGGGAATGAACTCTCACAGTTCTGCATGTCTAAGATTAGGCTTCTCACTAGCCTGCATGGAGCTAGGGACTTGTCATGGAAAACTCAATATGACACAATGTAAAAAGTTACTTCCTCCGGATTTTGAGCTTTCCGCTTGATCCAGTGGTAATGAAAACTGCAAATAACTAACTCAAAATAGTTCTGACACTCCATTTTAGGTTAATCAATGTGATCTGATGATCCTCTTTTTGTTATGCATCTTTGCTTAAGGTACTGAAAGAAGGATATCTAAACTATGTCTTCTCTTTTAATCTTTGTTGTAGTGTATTGTCGTTTATTATTTTTACTTTAACTCAGCCCCTCAACTTTTCTGTTGGTTACTCTCTTTGTAGAATGCACTACGACAACAGAGGTTTGTACGTGAAGTGACAATTCAGTTCAACTTATGCAATGAGCCTTGGTATGTACTGATTTTCTGGGTCAGCTTGCTCTTCAAATAGATGTTTTTTTCCACTCTTTAGATACAGAACTTTCCAGTTATGCATAGACTCTTGATATGTTGTTATTGTTGTTGTTGTTATGCATAGACCCTTGATGTGGTATAATACTCGGTCTTCTTTTCTTCTCATTCTGATTTTGCTGTTGGGTTCTGTTCATAACAAAAGAAGTAATTTTAATACTTTTAGTAAATAATTTACGGGGAGCAACCAGTTTTGTTTTCGCACTTTCTAGTGATTTATCTGAATATATTTTTCAAACTTATTGGAAAGGAGAACCAGGTAAATTTCTGTCAAATCATCTTTTCGCTTAAATAATCTGTATTGCTCAATAGTTACAATTTGTTGCTATCCTATGCAAGGGTTGAGGGCAGATGCTAGTGTCTATAAAGATAAATCTCTAATAAATCCTCAAGACTTATCTGCATGGATCTGTGAAGGCTTATCTGCATTACTTATCCTTTTGTTCTAATTTCGATACTTGTTAAAAATACTGCGCGTATGACTAGAAGTATAACTTCGAAGCAGTAAGAGTGATTCTTTGGAGGACTCTTTAGTTTTCTTAATCTTGATCATAGGGTGCTTGGGACTTTAAGGACATTTCCCTGGTTGATATGGTCTTTGTAATCTTGTGTGGAGATTTTCCCTATATGTTAATAAGCACTTGAGGTATGAGTTGGTATATCAAGGATGATCAATGCTATGTTTTACTTGTCATGTTCTATCCTCTGACTTTTGGTTTTGAGTCGGTAACAGAACTGGTGGTTTGATTGATATCCTTGAAAACAAAGCCCACTTTACTGGCTCATTTACCTTGAAAGGTTCTTTTTGATATTTTATGATGAGCTGTAGCCTATGGTTTATCCAGGCTTGTATTTACTTACTGTTTCTCGTTTCTTTCCCCAGGCTCAAATACAGTATCAGTGTTGTTGCTGACAAGGGTCTAAAAAAGGCCCTTTTTACATCTTCACGCCTGAAGAAGGGAGAAGTTCTTTACTTGGAAACTCATTCTAAGAGGTAACCACTGGCTTCACTCCTTTTAGTTTTTACCACCCTTCCATGGGTAAAAATGGGTAAAAATGTAACTCCATGCAGCTCTCTTAGTCTCTTATATTCCTTGCATGTTTCCTCTGGATCAGAGCGTAAAGGAAAGAACAATCATTGAAAAAGTGATTGATGGTGTGATCTTTGATACTTTTATACCTTCTACTGTGATCCTCATTTTCCTTCACTTCCTGATACTTGTTAATTACTTGAAGGTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAGGTACTCATCCTTGTTTCTTCCCCATTATATTGCTCTGACTCTTCTTCAAATGCCGATAGATGCATGTCAAATCTTCTAAAAAGCAGTGCATTTTTGAAAAAGTAACATGTGCTGTGAACCAAGGTTACTCCCCTTGTCAGGGTGTACTTTTACCTTGATTGTCTAACAATGTTGTTATTAACTTTTGGAAGGTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGCTTTGTAATAGATACAGTTTATTCTATAAGACAAAGATGTATTGGGATTTATACTGATTAGAATGATAAATTGTGGAACTCATGAACAATGTTGTTTTGTGAACATTGTGCATATGTTGATTTCTTCTTCCAGCTT</genome_strand>
        <mrna_strand>CACATTCCTCAACCTTGGAGCCTACTCTTGCTCCGGTGGCGGTAGAGCGCACTATGACCACTCGAGCTGCAGCTTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCACTACGACAACAGAGGTTTGTACGTGAAGTGACAATTCAGTTCAACTTATGCAATGAGCCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAATACAGTATCAGTGTTGTTGCTGACAAGGGTCTAAAAAAGGCCCTTTTTACATCTTCACGCCTGAAGAAGGGAGAAGTTCTTTACTTGGAAACTCATTCTAAGAG..................................................................................................................................................................................................................................................GTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAG...............................................................................................................................................................................................GTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGCTTTGTAATAGATACAGTTTATTCTATAAGACAAAGATGTATTGGGATTTATACTGATTAGAATGATAAATTGTGGAACTCATGAACAATGTTGTTTTGTGAACATTGTGCATATGTTGATTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549962" ref_strand="+" ref_description="SGN-E549962 [TUS-5-L22]">
      <seq>agaggtatgagctctgttttagtggtgaaaagatggttaaggctacaacttctctgatgcatgaaatggatgttgacaaacctcaaagtcacaatttacacatggcaaacggagaaaaaaatggagtgaatggtgagaatacgatggtagatatgttccgactgtctcgttgtaagaagcccctgcctcagaaactaatgcaatcagttggaattcctttgccccttgaacatgttgaggttttggaggagaatctggagtgggaaaacattcaatggtcacaaactggtgtttggattgctggaaaagaatatcctcttactagagcgcattttctttccccaaattaggcaatgctttgtaatagatacagtttattctataagacaaagatgtattgggatttatactgattagaatgataaattgtggaactcatgaacaatgttgttttgtgaacattgtgcatatgttgatttcttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="68340" stop="67066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68284" g_stop="68281" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68280" i_stop="68039" i_length="242">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68038" g_stop="67804" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="239" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67803" i_stop="67613" i_length="191">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67612" g_stop="67366" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="486" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E549962" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68284" e_stop="68281"/>
          <exon e_start="68038" e_stop="67804"/>
          <exon e_start="67612" e_stop="67366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTAACCACTGGCTTCACTCCTTTTAGTTTTTACCACCCTTCCATGGGTAAAAATGGGTAAAAATGTAACTCCATGCAGCTCTCTTAGTCTCTTATATTCCTTGCATGTTTCCTCTGGATCAGAGCGTAAAGGAAAGAACAATCATTGAAAAAGTGATTGATGGTGTGATCTTTGATACTTTTATACCTTCTACTGTGATCCTCATTTTCCTTCACTTCCTGATACTTGTTAATTACTTGAAGGTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAGGTACTCATCCTTGTTTCTTCCCCATTATATTGCTCTGACTCTTCTTCAAATGCCGATAGATGCATGTCAAATCTTCTAAAAAGCAGTGCATTTTTGAAAAAGTAACATGTGCTGTGAACCAAGGTTACTCCCCTTGTCAGGGTGTACTTTTACCTTGATTGTCTAACAATGTTGTTATTAACTTTTGGAAGGTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGCTTTGTAATAGATACAGTTTATTCTATAAGACAAAGATGTATTGGGATTTATACTGATTAGAATGATAAATTGTGGAACTCATGAACAATGTTGTTTTGTGAACATTGTGCATATGTTGATTTCTTCTTC</genome_strand>
        <mrna_strand>AGAG..................................................................................................................................................................................................................................................GTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAG...............................................................................................................................................................................................GTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGCTTTGTAATAGATACAGTTTATTCTATAAGACAAAGATGTATTGGGATTTATACTGATTAGAATGATAAATTGTGGAACTCATGAACAATGTTGTTTTGTGAACATTGTGCATATGTTGATTTCTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233614" ref_strand="+" ref_description="SGN-E233614 [cLED-14-I3]">
      <seq>gaggtatgagctctgttttagtggtgaaaagatggttaaggctacaacttctctgatgcatgaaatggatgttgacaaacctcaaagtcacaatttacacatggcaaacggagaaaaaaatggagtgaatggtgagaatacgatggtagatatgttccgactgtctcgttgtaagaagcccctgcctcagaaactaatgcaatcagttggaattcctttgccccttgaacatgttgaggttttggaggagaatctggagtgggaaaacattcaatggtcacaaactggtgtttggattgctggaaaagaatatcctcttactagagcgcattttctttccccaaattaggcaatgctttgtaatagatacagtttattctataagacaaagatgtattgggatttatactgattagaatgataaattgtggaactcatgaacaatgttgttttgtgaacattgtgcatatgttgatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="68340" stop="67071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68283" g_stop="68281" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68280" i_stop="68039" i_length="242">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68038" g_stop="67804" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="238" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67803" i_stop="67613" i_length="191">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67612" g_stop="67371" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="480" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E233614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68283" e_stop="68281"/>
          <exon e_start="68038" e_stop="67804"/>
          <exon e_start="67612" e_stop="67371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTAACCACTGGCTTCACTCCTTTTAGTTTTTACCACCCTTCCATGGGTAAAAATGGGTAAAAATGTAACTCCATGCAGCTCTCTTAGTCTCTTATATTCCTTGCATGTTTCCTCTGGATCAGAGCGTAAAGGAAAGAACAATCATTGAAAAAGTGATTGATGGTGTGATCTTTGATACTTTTATACCTTCTACTGTGATCCTCATTTTCCTTCACTTCCTGATACTTGTTAATTACTTGAAGGTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAGGTACTCATCCTTGTTTCTTCCCCATTATATTGCTCTGACTCTTCTTCAAATGCCGATAGATGCATGTCAAATCTTCTAAAAAGCAGTGCATTTTTGAAAAAGTAACATGTGCTGTGAACCAAGGTTACTCCCCTTGTCAGGGTGTACTTTTACCTTGATTGTCTAACAATGTTGTTATTAACTTTTGGAAGGTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGCTTTGTAATAGATACAGTTTATTCTATAAGACAAAGATGTATTGGGATTTATACTGATTAGAATGATAAATTGTGGAACTCATGAACAATGTTGTTTTGTGAACATTGTGCATATGTTGATTTCT</genome_strand>
        <mrna_strand>GAG..................................................................................................................................................................................................................................................GTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAG...............................................................................................................................................................................................GTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGCTTTGTAATAGATACAGTTTATTCTATAAGACAAAGATGTATTGGGATTTATACTGATTAGAATGATAAATTGTGGAACTCATGAACAATGTTGTTTTGTGAACATTGTGCATATGTTGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550262" ref_strand="+" ref_description="SGN-E550262 [TUS-5-L22](-)">
      <seq>agaggtatgagctctgttttagtggtgaaaagatggttaaggctacaacttctctgatgcatgaaatggatgttgacaaacctcaaagtcacaatttacacatggcaaacggagaaaaaaatggagtgaatggtgagaatacgatggtagatatgttccgactgtctcgttgtaagaagcccctgcctcagaaactaatgcaatcagttggaattcctttgccccttgaacatgttgaggttttggaggagaatctggagtgggaaaacattcaatggtcacaaactggtgtttggattgctggaaaagaatatcctcttactagagcgcattttctttccccaaattaggcaatggtttgaaatagatacagtttattctataagacaaagatgtattgggatttatactgatgagaatgataaattgttttctcatgaacgatgttgttttggaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="68340" stop="67122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68284" g_stop="68281" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68280" i_stop="68039" i_length="242">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68038" g_stop="67804" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="239" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67803" i_stop="67613" i_length="191">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67612" g_stop="67390" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="460" r_length="221" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E550262" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68284" e_stop="68281"/>
          <exon e_start="68038" e_stop="67804"/>
          <exon e_start="67612" e_stop="67390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTAACCACTGGCTTCACTCCTTTTAGTTTTTACCACCCTTCCATGGGTAAAAATGGGTAAAAATGTAACTCCATGCAGCTCTCTTAGTCTCTTATATTCCTTGCATGTTTCCTCTGGATCAGAGCGTAAAGGAAAGAACAATCATTGAAAAAGTGATTGATGGTGTGATCTTTGATACTTTTATACCTTCTACTGTGATCCTCATTTTCCTTCACTTCCTGATACTTGTTAATTACTTGAAGGTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAGGTACTCATCCTTGTTTCTTCCCCATTATATTGCTCTGACTCTTCTTCAAATGCCGATAGATGCATGTCAAATCTTCTAAAAAGCAGTGCATTTTTGAAAAAGTAACATGTGCTGTGAACCAAGGTTACTCCCCTTGTCAGGGTGTACTTTTACCTTGATTGTCTAACAATGTTGTTATTAACTTTTGGAAGGTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGCTTTGTAATAGATACAGTTTATTCTATAAGACAAAGATGTATTGGGATTTATACTGATTAGAATGATAAATTGTGGAACTCATGAACAATGTTGTTTTGTGAACAT</genome_strand>
        <mrna_strand>AGAG..................................................................................................................................................................................................................................................GTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAG...............................................................................................................................................................................................GTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGGTTTGAAATAGATACAGTTTATTCTATAAGACAAAGATGTATTGGGATTTATACTGATGAGAATGATAAATTGT-TTTCTCATGAACGATGTTGTTTTG-GAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707662" ref_strand="+" ref_description="SGN-E707662 [FA33CE09]">
      <seq>catcaatgactcggatcttgtcgcagttcttatgcacacaggttactgtcgtacaactgcgtctcctcttttgcctactattacggagttacgtgctactatcagggtactacctccacaaaattgctacatatctactctgaggaacaatgtgcgatcacgtgcgtggggagctgcagttggctgcagctatcgtattgagcggtgctctgttgtgaagaaaggaggtggaacaatcgatcttgaaccttgtctaacacattcctcaaccttggagcctactcttgctccggtggcggtagagcgcactatgaccactcgagctgcagcttcgaatgcactacgacaacagaggtttgtacgtgaagtgacaattcagttcaacttatgcaatgagccttggctcaaatacagtatcagtgttgttgctgacaagggtctaaaaaaggccctttttacatcttcacgcctgaagaagggagaagttctttacttggaaactcattctaagaggtatgagctctgttttagtggtgaaaagatggttaaggctacaacttctctgatgcatgaaatggatgttgacaaacctcaaagtcacaatttacacatggcaaacggagaaaaaaatggagtgaatggtgagaatacgatggtagatatgttccgactgtctcgttgtaagaagcccctgcctcagaaactaatgcaatcagttggaattcctttgccccttgaacatgttgaggttttggaggagaatctggagtgggaaaacattcaatggtcacaaactggtgtttggattgctggaaaagaatatcctcttactagagcgcattttctttccccaaattaggcaatgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="73787" stop="67191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73487" g_stop="73462" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73461" i_stop="72242" i_length="1220">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72241" g_stop="72143" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="125" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72142" i_stop="71302" i_length="841">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71301" g_stop="71207" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="220" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71206" i_stop="70495" i_length="712">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70494" g_stop="70381" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="334" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70380" i_stop="69403" i_length="978">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69402" g_stop="69335" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="402" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69334" i_stop="68392" i_length="943">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68391" g_stop="68281" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="513" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68280" i_stop="68039" i_length="242">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68038" g_stop="67804" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="748" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67803" i_stop="67613" i_length="191">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67612" g_stop="67491" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="870" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E707662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73487" e_stop="73462"/>
          <exon e_start="72241" e_stop="72143"/>
          <exon e_start="71301" e_stop="71207"/>
          <exon e_start="70494" e_stop="70381"/>
          <exon e_start="69402" e_stop="69335"/>
          <exon e_start="68391" e_stop="68281"/>
          <exon e_start="68038" e_stop="67804"/>
          <exon e_start="67612" e_stop="67491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAATGACTCGGATCTTGTCGCAGGTTTGTCCTTGTCTCAATAATATTAAGGCTCCATTGTGCACTCATGTATGTATGTATGTATGTAGGTAGTTTATGCACTTAGTGAAAGTAAAGGGTAAATTATGAAAAACAACTTAGTTTAGCCCACGGCAGTTTCCAATTACAACTTTCTTGTTTCTCCTTGTGTATTGTGGGAGCGGCTTGTTGTTCTTCCAAAAGGAAAATATTTTTGTTGATTAATTTTTGAGGTATGTTTTGGAAAAAGCTAGAGAATCTATGAAAATCAGATGTAAGGAAATGCATATACCTCTAGACATGCTTTCCAGTTTCCACAATTACATTAAATTTGTGAAATCAGGAGCCTCTAGCTATGCCTCATTCTGGATTTACGGTAGTGCTGGTTTATTCAGGGTTTGTTGTGAAAGAAATGGGCAGTGTGGACTTGGAATAATGAATGGCTGCGCAAGTGTATAGTTATAGCATTTTTTAGTAGTGATAATGGTCTGGTCTGTAGGTGTTTTCTGACAGTGGTGGCAGCTATGCAATATGGTTTGAGACTTAACCTGGAATTGATCATAAAATGAAACTTCCTTGATGTGGGAACATGACAGAGAGAAAAGAGTTGAATATGTGGTAAGAGACAAGCACACAGGTCTATGGATGAGGAGGTGTTTCTTTGGATGGAAGAGAAGAGTATGTAGGAAGTCCTTGTACATGATGAAAAGATGGATTAGATTGGAAGGTGATGAGTTCATCTTGACTTCACTCACCAAATAATTTGCACTAGATAACAAATTCATTGTATGGTAGTTTGATGCATTATGCCACGAACTTCTCCAAACCAACAGTGTTTTAGGGTTTCTAGTTTAAAGGGTACCTTCATGTGGTGGATTCTTTCACTAGTCAAGCTTCCATTGTTCCTCGAATTTTTTAGAAATATGATCTAGTCAATTGGCCTTGTAGATAATTATTCTAAAGGGACAATGTAATTGTCCTGAACTTCCCTTGTTGTTGGTTGTGGTACTGGTTTCTGTTTGTCTTCCATTGAAGAGGCACATATATATGCTCAAATCATATCAATTACTATCAACTTATCTGCTTGTCCATTCAAGCAAACTTGGGAAAACTGTTAAGCCTTGTGCCTCAGAATTGCTTGAGAACTTCCCCATGTACTTTTCCTAGTGATCAGGGACAATACAGATCATGATATCTATTAACTACTGTTTGTCTTGTTTCTCCAGTTCTTATGCACACAGGTTACTGTCGTACAACTGCGTCTCCTCTTTTGCCTACTATTACGGAGTTACGTGCTACTATCAGGGTACTACCTCCACAAAATTGTAAGTCTCCTGCAGAAAATCTTGCTTTAAAAATGCTATTGTTAGGAAACAAAGCCTGTTCTACATATGGTATAATGTTTTAAAGTTTTCTCTTGGTAAGTTGTTTTGAGCTGCACTACAACCTAGTGGTCAATGAAGTGGGTTGAGACATGAGGTTTTAGGTTCACAACCATAGCCTCTTTTAGTTTTTCTTTCCATTCTCTCTTTCTCTGGCTTGCTCTTTCCTTTTTGGTACTTACCTAATAGTTGATTATGAATCTCTCTGAAGATTTGTGGTGAGGACCTGGATGCATGCATATTTTTTTCACAATGTTAACTAGTTTGTTCCTTGTAGAGATATTCCCCCACAGTGTTTTATACAATATTGGCCCTAAACTTCCACTTTTTAATTTTCCTGGGCCTTATTTTGATTAGTTAAACCGATATTAAATCCAAGCTTCTGCAAGTTAACAAGTTGCTGATCCCTCGAAATGTGCATCTTATATCAACAGTACTAATTGATTATGGTAAAACTGGAGAAACTATGGAGGTGCAAGTGGACAAATTGCTTATCCCCTTGAAATATGCAGATTGTTCAACTATACCAATTGATCCCTTGTGTCTTTGTTTGTTCTTCTTTTGTGGACATCTTGGCCTTCAAATTTTAGTAGGCGCTGTACTGTCGTTGTGACATTTCTTTACTAATGGGTAAAAAGATAGATACTGACTAGTTGTTCAGAAACTTAGAATCTTTTGCATGATTTCTGTGAGTAAAATCATAAATCTGTTCAAATTAGTTGTTGCATCCCAATTCACTGCATTTCTGATGTTAAACTCTGAATTTGTTGTTGAATTTATGAAGGCTACATATCTACTCTGAGGAACAATGTGCGATCACGTGCGTGGGGAGCTGCAGTTGGCTGCAGCTATCGTATTGAGCGGTGCTCTGTTGTGAAGGTGTGGATTACCATTCTTCATTCCTTCCCTTCTGTTCTTTCTGGTATAGCACAAAAAAGTTTCATTTTTTTTTGTAAGGTAAATAATTTTATCAATAATTGGAACTGCACTTCTTTTGAAAATAACCTCTCTGCCTGACAAGGTAGGGTAAGGTCTACCTACCCTCTATCCTCCTAGACCCCACTTAGGGAAAATACTGGATATGTTGTTATTGTAATGGGGAAATATCCTGTTTACAAGTGATATGCCAAAACGTAGAGAATCTTTATCAAAATATGATTCTGACGAGCAGCTCCTAATTTTCTATACAAATTGTAACATCATGGGTGCACCAAAAATAAACTACGAATCAGACGCTATTCGTCAAATGTAGATATTCGTTCATCCCCTCGATCCTACTGAACCCGCAGGAGTTCTAGTGGGGCAATATCCAGGCTCTTCTTCAAATTTACTTTCTTAATTTCTAGTGGAGAGTCTCTTTCTCTGTATGTACTTTGTTTTGCCAAACTTTTAGTTTTCATTAGATGATTGTACATACTTTGTGGATGGACTTGCATTTACCAGCTATTTTTGCCTAGATACACATTTATTTACTTTTGATTTATATATGCGAGTAAATTCTTTGTATAACTATTGAATGTGCAGTTATCTCTATGTGGAACTTTGTACCACTTCCTATATAACCTTTTTGATTATTTGTCCTGTCCTTCAGAAAGGAGGTGGAACAATCGATCTTGAACCTTGTCTAACACATTCCTCAACCTTGGAGCCTACTCTTGCTCCGGTGGCGGTAGAGCGCACTATGACCACTCGAGCTGCAGCTTCGGTATTGTTTCACTTAAGTAGAAGTTCATTCTGCTTTCTAAATTTGTTAGTGTTATGTGACAAAAATCAGCTGCTCACTTTCCTTCTCTGGTAGCCTAAAATTGTTTATCATTCTGCTGTTCTCTCTATAAATAGCATAATCAGCTGAAAACCATCTAGGCGGGGACTATTGCTGGCTTTTTTCTCTTTTCGATTTCTGTAGGCTACTGCTAAACCCTTCTGCACTCTAAAGCTGTCAAACTAACATCTAATGGATGTAATCCTATGGATTTAAACAGTTCGACAGAAAAGGATAAACAAAGATAAAGAGGATTCTGGTTTATTCATGGGAACATGATTTTGCCTCAACTGTATTATCAAAAAAATGAGTTTGCCTCAACTATCTTTAAATTTTAAAATAATAACATAAATTAAAATTCTGAAACTTGGAACTTCCTGCATCTATACCTTTTTGGAGTGATCGAATTCCTTCTATATGATTCATCGTATAAACAGCCCAAGTACATCACAGTTGAGTTCGAGATAATACTCGGTCTTTATACATCATGTTATCATCTTATCTTCATTTTCTGTGAGATGTATTATGCTGCGACTATTTAGGATTAAGGGAATGAACTCTCACAGTTCTGCATGTCTAAGATTAGGCTTCTCACTAGCCTGCATGGAGCTAGGGACTTGTCATGGAAAACTCAATATGACACAATGTAAAAAGTTACTTCCTCCGGATTTTGAGCTTTCCGCTTGATCCAGTGGTAATGAAAACTGCAAATAACTAACTCAAAATAGTTCTGACACTCCATTTTAGGTTAATCAATGTGATCTGATGATCCTCTTTTTGTTATGCATCTTTGCTTAAGGTACTGAAAGAAGGATATCTAAACTATGTCTTCTCTTTTAATCTTTGTTGTAGTGTATTGTCGTTTATTATTTTTACTTTAACTCAGCCCCTCAACTTTTCTGTTGGTTACTCTCTTTGTAGAATGCACTACGACAACAGAGGTTTGTACGTGAAGTGACAATTCAGTTCAACTTATGCAATGAGCCTTGGTATGTACTGATTTTCTGGGTCAGCTTGCTCTTCAAATAGATGTTTTTTTCCACTCTTTAGATACAGAACTTTCCAGTTATGCATAGACTCTTGATATGTTGTTATTGTTGTTGTTGTTATGCATAGACCCTTGATGTGGTATAATACTCGGTCTTCTTTTCTTCTCATTCTGATTTTGCTGTTGGGTTCTGTTCATAACAAAAGAAGTAATTTTAATACTTTTAGTAAATAATTTACGGGGAGCAACCAGTTTTGTTTTCGCACTTTCTAGTGATTTATCTGAATATATTTTTCAAACTTATTGGAAAGGAGAACCAGGTAAATTTCTGTCAAATCATCTTTTCGCTTAAATAATCTGTATTGCTCAATAGTTACAATTTGTTGCTATCCTATGCAAGGGTTGAGGGCAGATGCTAGTGTCTATAAAGATAAATCTCTAATAAATCCTCAAGACTTATCTGCATGGATCTGTGAAGGCTTATCTGCATTACTTATCCTTTTGTTCTAATTTCGATACTTGTTAAAAATACTGCGCGTATGACTAGAAGTATAACTTCGAAGCAGTAAGAGTGATTCTTTGGAGGACTCTTTAGTTTTCTTAATCTTGATCATAGGGTGCTTGGGACTTTAAGGACATTTCCCTGGTTGATATGGTCTTTGTAATCTTGTGTGGAGATTTTCCCTATATGTTAATAAGCACTTGAGGTATGAGTTGGTATATCAAGGATGATCAATGCTATGTTTTACTTGTCATGTTCTATCCTCTGACTTTTGGTTTTGAGTCGGTAACAGAACTGGTGGTTTGATTGATATCCTTGAAAACAAAGCCCACTTTACTGGCTCATTTACCTTGAAAGGTTCTTTTTGATATTTTATGATGAGCTGTAGCCTATGGTTTATCCAGGCTTGTATTTACTTACTGTTTCTCGTTTCTTTCCCCAGGCTCAAATACAGTATCAGTGTTGTTGCTGACAAGGGTCTAAAAAAGGCCCTTTTTACATCTTCACGCCTGAAGAAGGGAGAAGTTCTTTACTTGGAAACTCATTCTAAGAGGTAACCACTGGCTTCACTCCTTTTAGTTTTTACCACCCTTCCATGGGTAAAAATGGGTAAAAATGTAACTCCATGCAGCTCTCTTAGTCTCTTATATTCCTTGCATGTTTCCTCTGGATCAGAGCGTAAAGGAAAGAACAATCATTGAAAAAGTGATTGATGGTGTGATCTTTGATACTTTTATACCTTCTACTGTGATCCTCATTTTCCTTCACTTCCTGATACTTGTTAATTACTTGAAGGTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAGGTACTCATCCTTGTTTCTTCCCCATTATATTGCTCTGACTCTTCTTCAAATGCCGATAGATGCATGTCAAATCTTCTAAAAAGCAGTGCATTTTTGAAAAAGTAACATGTGCTGTGAACCAAGGTTACTCCCCTTGTCAGGGTGTACTTTTACCTTGATTGTCTAACAATGTTGTTATTAACTTTTGGAAGGTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGCTTTG</genome_strand>
        <mrna_strand>CATCAATGACTCGGATCTTGTCGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTATGCACACAGGTTACTGTCGTACAACTGCGTCTCCTCTTTTGCCTACTATTACGGAGTTACGTGCTACTATCAGGGTACTACCTCCACAAAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACATATCTACTCTGAGGAACAATGTGCGATCACGTGCGTGGGGAGCTGCAGTTGGCTGCAGCTATCGTATTGAGCGGTGCTCTGTTGTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGGTGGAACAATCGATCTTGAACCTTGTCTAACACATTCCTCAACCTTGGAGCCTACTCTTGCTCCGGTGGCGGTAGAGCGCACTATGACCACTCGAGCTGCAGCTTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCACTACGACAACAGAGGTTTGTACGTGAAGTGACAATTCAGTTCAACTTATGCAATGAGCCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAATACAGTATCAGTGTTGTTGCTGACAAGGGTCTAAAAAAGGCCCTTTTTACATCTTCACGCCTGAAGAAGGGAGAAGTTCTTTACTTGGAAACTCATTCTAAGAG..................................................................................................................................................................................................................................................GTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAG...............................................................................................................................................................................................GTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206190" ref_strand="+" ref_description="SGN-E206190 [cLEC-29-K1]">
      <seq>agggaaagagaagcttttaattatggagttcagcagcgcaagagaatgtcgcggccaagagggagccccatggccaatcgcgatcctcgttttaggtcgcacactcatgaaaatgaaggatctcaagtgaagcatgatgtatctgctgtcaattacagagttggtgagtgtatgccagaactgattaaattatggaaggaatatgaatcatccaaagcagatgaagcatctgatagctctccaagtgatcctactctagaaattaggattccagctgaacacgtatcagctacaaatcggcaggtgagaggtggccaactatggggaacagatatatacaccaatgactcggatcttgtcgcagttcttatgcacacaggttactgtcgtacaactgcgtctcctcttttgcctactattacggagttacgtgctactatcagggtactacctccacaaaattgctacatatctactctgaggaacaatgtgcgatcacgtgcgtggggagctgcagttggctgcagctatcgtattgagcggtgctctgttgtgaagaaaggaggtggaacaatcgatcttgaaccttgtctaacacattcctcaaccttggagcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="80131" stop="70133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79831" g_stop="79713" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79712" i_stop="78276" i_length="1437">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78275" g_stop="78268" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="127" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78267" i_stop="75452" i_length="2816">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75451" g_stop="75276" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="303" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75275" i_stop="73523" i_length="1753">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73522" g_stop="73462" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="364" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73461" i_stop="72242" i_length="1220">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72241" g_stop="72143" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="463" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72142" i_stop="71302" i_length="841">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71301" g_stop="71207" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="558" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71206" i_stop="70495" i_length="712">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70494" g_stop="70433" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="620" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E206190" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79831" e_stop="79713"/>
          <exon e_start="78275" e_stop="78268"/>
          <exon e_start="75451" e_stop="75276"/>
          <exon e_start="73522" e_stop="73462"/>
          <exon e_start="72241" e_stop="72143"/>
          <exon e_start="71301" e_stop="71207"/>
          <exon e_start="70494" e_stop="70433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAAAGAGAAGCTTTTAATTATGGAGTTCAGCAGCGCAAGAGAATGTCGCGGCCAAGAGGGAGCCCCATGGCCAATCGCGATCCTCGTTTTAGGTCGCACACTCATGAAAATGAAGGGTATGCCTTTTCATTTGATGATTGACTTGACACTATTTATGCTTTACTCATTAATAATGATCGATAGATAATCCATCGCCTACAACCAGCAGACATAATGGTTCATTAAAACTCTAGATAGACATCATAGACTCTATCTGCTACAATCCTAGAGTTTGATGATGTGAGAACTATCATATGTTAGAGAAATACGTGTCTACATTCATACCCATCTCAATTCAATTAATTTGTTGAGGGGAAATATTATAGAACTAATAAAAAAGAATAAGGAAAAATAATAGAACTTTCCATAGGATACCTTATGAGATCCTGTATTCAATTACAGAATATTTTTTTACCTTATATGCATAGAGAATGCTTACCTGTCTTGTGCAGAATCTTATATGGGTTCCTCTTGTACATTGTTAATCAACTAAATCAATAAAATGTTAAATTTAATTTTCACAAGGTAGTTGAGCCTTTTCGGTCTTGGTAGACATTCATACAGCTTCCACCTATAAGAGACGACCTCATGCCGCCTGCAGGTTATTGTTTTTCTTTTTTCCTTTTTGTTTCCTAGCTATCAACACTCTCATCCACGAGTGGTGTCGACTGCTCTGACCTCGTTTTTCGGCTATTAGCGCTGCTCCTCTCTTTTTCTAGCATGCCGGTCCTCTTTTTCCTGTGACCAATGTCACTACTATCTTCCTGAGGCAACTGCCACTACTCATTTCTGTGGTGATTATTCTGGATGCTTCTCTCTTCAACTACCAATACCACCGGTGTTGCTCTTCTCTACAGCAGACGACCTCCTCCTCTAGACCTTGAATTTTGGTCATTCTTCTGCCAATTCAAGTTTCCGATGATGTCTTGGAGATCTGCGACACCATACCTCTATTCGATTATTGGAAATAGATCATTTTCTGGTTCCAGGTCTTTGGTTCAACGGCAAAGGTAGTACAACGTTGTGTGTGTGGTAGGTGCACGCCACAACTTCGAATCCTATTGGGGAACTAGGTCTTGTGTTTAAATGGAGAAGGATAGGGGTGACCTATTTTCCACAGACTTTGAAGCCTAAACAATAGACTTATCGGTTATAAAAAATAAATAAAAGAAGAGTACATTATTTCTCTGTTTCTGAATTCAATTATATTTTGGAATTCTTCCATTTCCCTGTCCTGAAAATTCCTCCCGTCAAGCAATTCAACTAGGTTATCATAGACTTACTTGTCAAAGAATAATATATGGGATGTGTTAAGTTCATTTTCTTGTCTAGCAACTACAAAATACTCATTTTCTTGTCTTGCAACTACAAATTGTTAATCTGTGTTGAAAAAACTTTCTATAAGTTATTAAGCATGGATTTTATTTCCTTTTAATACCACTTAGATGATATCTGGACATAGATGTTTCTTTGATTGTTATGTAGTGTAACTCTTCTTCTGTCTTTCTGTGCAGATCTCAAGGTAAGCTGTTAAAGTACTTATCTTGGAGTTGTCTCAAATTGGTATCATCCAGGAGGGAGTTGTCCTTGGCATTCATGCTTGCAGATTTGTTTGATTCTGAGAAAATTGCTAATTTAACTAGTTAGACAACATTGATCCCATCTTTTATTGGTTGAGATAGTTTCCATGTTAGGAATTGGTGTTCTTTTGGCCAGCTGTTTCTGCCTTAGGTCGTAGATATTCCTATATGCAAAATCATAGGCTCACATGTTCCTGCTTTTTTCTCCACTTTTCATCATAACTGCTTTTTGTTTCTGTTTATAGGTTCATGAATCTCCTTCTGTAGAAGTGTTATACTCGAACTGTTTTGAATGTCTCGTTGGTCATTCCTTTTCCAGCATGATGAGAAAGGAACTCTGTAGATGTCCTGATTCATTTTCTGCATCTCATGTGCGCATATATTTTTTTTCTTTCTGGATTTACTCCATTGATTGCTTGAACTTGTTTGCACGGTATATCCGGATACTCTATAAGTTTTAGCTATCCTAAATTTTGTATTATTTTGGACCGTGAACTGCAAATTTTGTGCCATTTGTTTGAATTTGTATAACCCTTGTAAATGCCTCCACAGTTATAAAGTTCTGTTGTGCATTAAGATAGTGATGCAGTGACCAATTTCTATGTTTAGTGGCCAAAAAAATCAGTAGTTCGTGACCAAATTAGCATGATGAATAGTTGAAAGCTGTTCCCACCAGAATTAGAGGACTGTCTTACTTGAAATGCTTCAAGTCATATTAGATGACAATGCATATATCTTTTTGCATCGGAGTCTTCTTGTAAAAAACACTTTCTGGCTACATGTTACATGTTAAGTTCACTTCTTACAACCATCTCAAAGGTCGTTTGACTCGTGCGCTTGAATCAGGGGACTGTTTGCTGGATTTTATAAAGCCAATCAACATCGTCAAGCTTGTGCTCTTTCTTTCTTTAGATAACCACCTTTTTTTTTCCAAAAAAATCTCTTTATACCTTTTTTATTCATCAGATTGAGCAGTACTTCGTAACATACTAAGCTTTTCAAAAATAGTCTATCTGTGCAATCTACAATTAATTTAGGAACTAAAAGATCCTTTTACACGAAATCATACCCAAAAATTAACCAGAAAAAAGTACACCAAAACGGAGATTAGGTGAGGTGATTAGGCGAGAAATCTAAGTCATAGTATGATTATCTTTTTCTTTGAGAATATGACTTTTCCTTGTATTTTTGCCTTTTAATAAAGCTGTGAGTTGCATTGATCTCCTTCCTAGTCTGCCAAAATTACAGTGTCCTTCTGATTCTGATGCGTTAATATTTCATTACAAATTTACAAATTCTTCCCTATCCCCGTTTCAAATCAAATCTAAATTGAGGAATGAACATTGGCCAAATTCCTAAATAATCCAAAAAGGTCCACAAAAATTAACAAATTAAGAAGGCTAAGTCAGTCATTATCAGGAGAAAACATGCTATTATATCTGTTTAGCATATATCCGTTCCCATTTTCTTCCTTTGTGTCTTTAGGGAGAATTAGGGAAAGTGACTACTAATTCTTAAGTGTCTGTTTAAGAAAAAATTTAAATTGAAAATGTTAGCTTAACCAAAGTAAAAATAGGTCAGAATTGTTACTTGAGCTCAATCCGTAATCTACGTCGGTGTTTTTTTGTTATATTATTGCACATTGGTTGAGGGAATGAATTGTTGTGTGCTTACATGTCCTTGGGCCTCCTCATGAGCTAGCCTTTGTGATTGAGTAAGGCTTGAGGTTCATTTTATTTACATGGTAGCATAGCTAGAGCCATCCCTATTGTTCCACGCTCCAAGTGTTCCATGAGAGGCTTGGGGGGTAAGTATTAGAATGTCTCACAGTGGCTGAGAGATTGTTGTCTCCGCATATTGTTTCGAACAGTCCTAATATCATGTGCTAACTTTGGAGTTGAGTTAGGCCCAAGGTCCAATTTTTTAAAAAAAATGTCTGCTTATTTTAAACATGAAAACTTTCTATTTTGAATTAGAAAAGTAACAGCCAGACATTACTGGGGATTTTATTTTGTAGTTTCCAGGATTTAATTTTTTTACGTTGTCGACAAAATATAGTGGTAATTGTTACATTTCATATCAACTAAATCAAAGACTCAGATTATCAGCCGCACTTCGTGCGAAACCCAGCTTATAGCATACAGCTGTCATCTCATATTTGTGGAGCTGTCAGATATCACATGTAATCTATTCTAGTAAAGAATGCTATTTGCTTGTTGTGACCCATCACGGTACATCGTATGCTTGAAGTTGCGGATTTGGTACTTGTAACATATGCAAGTGATTCCGATCCATTAAATTCAGACCGGCATACCTACAGATCATATTACTTATATAGTGGAAGGGATTTATGAAATTCCTCTTTTGAGTCTAATCAAAAGAGCAAGTGGATCGAACTGTTTCTTGTCTCTGCTTTGCTTCAGAGTCTATGCGTCTAATGAGTTCTGTGATGATAAGTTCTGTAATTTCTTTTTTCTGTATGAAGTAGCTTGTAATAATAACTTTGATCTCAGATTTTTTGGGAAATATTTGTTGCTTTCACCTGCCATTGAAAAATTAGTCGTCAGTAGGTTAGGATGTTTTTCTAACTGTTTCATCCCAGTATGCTTGCTGCTGTTTTGAAACTGGCCAATTATAGTACAACGACAGAACAGAGGCTGTTTATTGATTAACTGACTAAGATGGGATGCAAAAATTGTTGTTGACTACTTAGTACTCATGCACCATATATAAACAAATGTTTCCTTTGTCTTTGCAGTGAAGCATGATGTATCTGCTGTCAATTACAGAGTTGGTGAGTGTATGCCAGAACTGATTAAATTATGGAAGGAATATGAATCATCCAAAGCAGATGAAGCATCTGATAGCTCTCCAAGTGATCCTACTCTAGAAATTAGGATTCCAGCTGAACACGTATCAGCTACAAATCGGCAGGTAAGATTGGAGTGGTAGCAGAGGATTCATATAACACCTTTTTATGTTTTATTTCATTTTCTTCTATGTGTTCTTCAAAGATAATGATCGTCCTAATTTTAAATAAAATCTCTTTCGATACTCCACTTGGGGGTTTTCCTTTCCGATCATTGAACAAGAAAAAGGGGTTGCACCGGACCCGAGGGTCCTTCGCACACAACCTCTCTATGTCCGTGAGTTAGGGTTAAGGTCTGCATACCACCCTCCCCAAACCCTACTTATGGGATTTCACTCGGTGTGTTCTTGTTGTTGACCAACCAGAATTTTCCGGTGACTCCAAAGTCTAACCAATACGTTGTTCTTTCTTCTTCAAATTTTTTCTTCCTTTTGTTTCTTTTTCTTTCTTCTTCTTCAGGCTTCGCAGTCACTTCTACCTTCTTTTTTTTTCACTGTTTTGATTTTTGTTCTGTTTATTTCTCATTCAACTTTTAAGTATGTACTATCTATTTTTAGTTTTTGAATTAAAATATTTGCTAATATGTTATTGCTATTGAGATTTTTATTATTTTTATATGCAATTAAATATTTTACTTTTTTGTTAATAATTGTGCCGCACTTCAAAAAGGCGGCGCACCTTGCTGCTCGCCTCACCTTTTGGTGAGGCAGACCCTTGTCGCCTTTTGCCATCCAAAACACATTTATTCCAAAAAAAGGAGGGGCTCTATACAGGAGTCTAGCCTAATAAGATAAGTAATTAGCCTATAATTAAATCTAGATATCCTAAGCTATCCTATTGTAGTATTATGTAAGATTGTTCTTAATTACTTCAATAAATCTAGGCATGTGTGAATGTATGCACATATGATATTATTTATAGCCTGTTTGAAGTAAGCCGAGTAACAATAGTTGATAAGCATCAATTGCTGAAAAGCACTTTTAAGTGTTGGAACTGATTTTACATATTAACAGTTACATGTCTGGACATATGTGCTGACATTAATAACAAATAATTGGTATCTTTGGTAAAAATCTCGTTATTTCTGTTTAAAATGACTGAAATACCCTTAAAACTATTTTCAGAAATTATTAAATTTACAAGTGCACATGGAAAAGAGCTAATAGCGCAGTTACCTTTATCTCAAAAAAAAAGAAGAAGAAGAGCTAATTACGGATATCGAAACTAGAAAGGAGGAGATATGGATTTAGTTTTAGGAATGGTACATCAACTGCAACAATCTTTTTTGAGGATAAAAGAGTTAAGAGTCTAGTCAAAGCAAAAGTGCTTAGAAGCTGAAAAGTCATAAGTGACCAACTTATAGCTTTTGCCTGATTTTGACTTACAAGCACTTGGCTTATAAGCTATTTCGGTGTTTCTCAAACACTGAGATAAGCCCAAAAGTGCTTAATAGTTGGTTTGATCAGTTATAAGCTTACTGAACACACCCTCTTAATCTCGTAACAATAAAAAAATTGTGTGCAACATTAGACTGGTCAATTGATGGACCAAATTTGACTCGAGATGCAATAGAAGAGAGCTTCTGAAATCTAATATAAGTGTACCAAGCGTCATCACTCTCTCTCTCTCTCTTATTATGTTGGGTGGATAATACTTGTTCAGCAATTTTATCCGTTGTATGCATATTCCTGCTACTAATTCTGATACACATCTCATATCCCCATGCCTACATCTTTCTCTCAGTCTTATCTCTTGGCTTTGTAGTTTGGATTTGTCTAATTATGTTATATTGTCCTTTGAGTACTACACCATTTGCAGGTGAGAGGTGGCCAACTATGGGGAACAGATATATACACCAATGACTCGGATCTTGTCGCAGGTTTGTCCTTGTCTCAATAATATTAAGGCTCCATTGTGCACTCATGTATGTATGTATGTATGTAGGTAGTTTATGCACTTAGTGAAAGTAAAGGGTAAATTATGAAAAACAACTTAGTTTAGCCCACGGCAGTTTCCAATTACAACTTTCTTGTTTCTCCTTGTGTATTGTGGGAGCGGCTTGTTGTTCTTCCAAAAGGAAAATATTTTTGTTGATTAATTTTTGAGGTATGTTTTGGAAAAAGCTAGAGAATCTATGAAAATCAGATGTAAGGAAATGCATATACCTCTAGACATGCTTTCCAGTTTCCACAATTACATTAAATTTGTGAAATCAGGAGCCTCTAGCTATGCCTCATTCTGGATTTACGGTAGTGCTGGTTTATTCAGGGTTTGTTGTGAAAGAAATGGGCAGTGTGGACTTGGAATAATGAATGGCTGCGCAAGTGTATAGTTATAGCATTTTTTAGTAGTGATAATGGTCTGGTCTGTAGGTGTTTTCTGACAGTGGTGGCAGCTATGCAATATGGTTTGAGACTTAACCTGGAATTGATCATAAAATGAAACTTCCTTGATGTGGGAACATGACAGAGAGAAAAGAGTTGAATATGTGGTAAGAGACAAGCACACAGGTCTATGGATGAGGAGGTGTTTCTTTGGATGGAAGAGAAGAGTATGTAGGAAGTCCTTGTACATGATGAAAAGATGGATTAGATTGGAAGGTGATGAGTTCATCTTGACTTCACTCACCAAATAATTTGCACTAGATAACAAATTCATTGTATGGTAGTTTGATGCATTATGCCACGAACTTCTCCAAACCAACAGTGTTTTAGGGTTTCTAGTTTAAAGGGTACCTTCATGTGGTGGATTCTTTCACTAGTCAAGCTTCCATTGTTCCTCGAATTTTTTAGAAATATGATCTAGTCAATTGGCCTTGTAGATAATTATTCTAAAGGGACAATGTAATTGTCCTGAACTTCCCTTGTTGTTGGTTGTGGTACTGGTTTCTGTTTGTCTTCCATTGAAGAGGCACATATATATGCTCAAATCATATCAATTACTATCAACTTATCTGCTTGTCCATTCAAGCAAACTTGGGAAAACTGTTAAGCCTTGTGCCTCAGAATTGCTTGAGAACTTCCCCATGTACTTTTCCTAGTGATCAGGGACAATACAGATCATGATATCTATTAACTACTGTTTGTCTTGTTTCTCCAGTTCTTATGCACACAGGTTACTGTCGTACAACTGCGTCTCCTCTTTTGCCTACTATTACGGAGTTACGTGCTACTATCAGGGTACTACCTCCACAAAATTGTAAGTCTCCTGCAGAAAATCTTGCTTTAAAAATGCTATTGTTAGGAAACAAAGCCTGTTCTACATATGGTATAATGTTTTAAAGTTTTCTCTTGGTAAGTTGTTTTGAGCTGCACTACAACCTAGTGGTCAATGAAGTGGGTTGAGACATGAGGTTTTAGGTTCACAACCATAGCCTCTTTTAGTTTTTCTTTCCATTCTCTCTTTCTCTGGCTTGCTCTTTCCTTTTTGGTACTTACCTAATAGTTGATTATGAATCTCTCTGAAGATTTGTGGTGAGGACCTGGATGCATGCATATTTTTTTCACAATGTTAACTAGTTTGTTCCTTGTAGAGATATTCCCCCACAGTGTTTTATACAATATTGGCCCTAAACTTCCACTTTTTAATTTTCCTGGGCCTTATTTTGATTAGTTAAACCGATATTAAATCCAAGCTTCTGCAAGTTAACAAGTTGCTGATCCCTCGAAATGTGCATCTTATATCAACAGTACTAATTGATTATGGTAAAACTGGAGAAACTATGGAGGTGCAAGTGGACAAATTGCTTATCCCCTTGAAATATGCAGATTGTTCAACTATACCAATTGATCCCTTGTGTCTTTGTTTGTTCTTCTTTTGTGGACATCTTGGCCTTCAAATTTTAGTAGGCGCTGTACTGTCGTTGTGACATTTCTTTACTAATGGGTAAAAAGATAGATACTGACTAGTTGTTCAGAAACTTAGAATCTTTTGCATGATTTCTGTGAGTAAAATCATAAATCTGTTCAAATTAGTTGTTGCATCCCAATTCACTGCATTTCTGATGTTAAACTCTGAATTTGTTGTTGAATTTATGAAGGCTACATATCTACTCTGAGGAACAATGTGCGATCACGTGCGTGGGGAGCTGCAGTTGGCTGCAGCTATCGTATTGAGCGGTGCTCTGTTGTGAAGGTGTGGATTACCATTCTTCATTCCTTCCCTTCTGTTCTTTCTGGTATAGCACAAAAAAGTTTCATTTTTTTTTGTAAGGTAAATAATTTTATCAATAATTGGAACTGCACTTCTTTTGAAAATAACCTCTCTGCCTGACAAGGTAGGGTAAGGTCTACCTACCCTCTATCCTCCTAGACCCCACTTAGGGAAAATACTGGATATGTTGTTATTGTAATGGGGAAATATCCTGTTTACAAGTGATATGCCAAAACGTAGAGAATCTTTATCAAAATATGATTCTGACGAGCAGCTCCTAATTTTCTATACAAATTGTAACATCATGGGTGCACCAAAAATAAACTACGAATCAGACGCTATTCGTCAAATGTAGATATTCGTTCATCCCCTCGATCCTACTGAACCCGCAGGAGTTCTAGTGGGGCAATATCCAGGCTCTTCTTCAAATTTACTTTCTTAATTTCTAGTGGAGAGTCTCTTTCTCTGTATGTACTTTGTTTTGCCAAACTTTTAGTTTTCATTAGATGATTGTACATACTTTGTGGATGGACTTGCATTTACCAGCTATTTTTGCCTAGATACACATTTATTTACTTTTGATTTATATATGCGAGTAAATTCTTTGTATAACTATTGAATGTGCAGTTATCTCTATGTGGAACTTTGTACCACTTCCTATATAACCTTTTTGATTATTTGTCCTGTCCTTCAGAAAGGAGGTGGAACAATCGATCTTGAACCTTGTCTAACACATTCCTCAACCTTGGAGCCTAC</genome_strand>
        <mrna_strand>AGGGAAAGAGAAGCTTTTAATTATGGAGTTCAGCAGCGCAAGAGAATGTCGCGGCCAAGAGGGAGCCCCATGGCCAATCGCGATCCTCGTTTTAGGTCGCACACTCATGAAAATGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCATGATGTATCTGCTGTCAATTACAGAGTTGGTGAGTGTATGCCAGAACTGATTAAATTATGGAAGGAATATGAATCATCCAAAGCAGATGAAGCATCTGATAGCTCTCCAAGTGATCCTACTCTAGAAATTAGGATTCCAGCTGAACACGTATCAGCTACAAATCGGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAGGTGGCCAACTATGGGGAACAGATATATACACCAATGACTCGGATCTTGTCGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTATGCACACAGGTTACTGTCGTACAACTGCGTCTCCTCTTTTGCCTACTATTACGGAGTTACGTGCTACTATCAGGGTACTACCTCCACAAAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACATATCTACTCTGAGGAACAATGTGCGATCACGTGCGTGGGGAGCTGCAGTTGGCTGCAGCTATCGTATTGAGCGGTGCTCTGTTGTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGGTGGAACAATCGATCTTGAACCTTGTCTAACACATTCCTCAACCTTGGAGCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368948" ref_strand="+" ref_description="SGN-E368948 [TUS-25-H3]">
      <seq>ttgatgttcctggaaaaacaaacgagccggaaaactcaacagtggagcagaagaaacagaaagatcatgataactggaaaaatactgacagggatggaagtgagaggagaaaggaaagagatactgatttggaaggagagaggcctgagaaacgtgtcaggtgtcatgataaagaaccagaggaaggggacctggatactgaaggaggaggagaaagggaaagagaagcttttaattatggagttcagcagcgcaagagaatgtcgcggccaagagggagccccatggccaatcgcgatcctcgttttaggtcgcacactcatgaaaatgaaggatctcaagtgaagcatgatgtatctgctgtcaattacagagttggtgagtgtatgccagaactgattaaattatggaaggaatatgaatcatccaaagcagatgaagcatctgatagctctccaagtgatcctactctagaaattaggattccagctgaacacgtatcagctacaaatcggcaggtgagaggtggccaactatggggaacagatatatacaccaatgactcggatcttgtcgcagttcttatgcacacaggttactgtcgtacaactgcgtctcctcttttgcctactattacggagttacgtgctactatcagggtacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="80346" stop="71856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80046" g_stop="79713" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79712" i_stop="78276" i_length="1437">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78275" g_stop="78268" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="342" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78267" i_stop="75452" i_length="2816">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75451" g_stop="75276" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="518" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75275" i_stop="73523" i_length="1753">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73522" g_stop="73462" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="579" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73461" i_stop="72242" i_length="1220">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72241" g_stop="72156" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="665" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E368948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80046" e_stop="79713"/>
          <exon e_start="78275" e_stop="78268"/>
          <exon e_start="75451" e_stop="75276"/>
          <exon e_start="73522" e_stop="73462"/>
          <exon e_start="72241" e_stop="72156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGTTCCTGGAAAAACAAACGAGCCGGAAAACTCAACAGTGGAGCAGAAGAAACAGAAAGATCATGATAACTGGAAAAATACTGACAGGGATGGAAGTGAGAGGAGAAAGGAAAGAGATACTGATTTGGAAGGAGAGAGGCCTGAGAAACGTGTCAGGTGTCATGATAAAGAACCAGAGGAAGGGGACCTGGATACTGAAGGAGGAGGAGAAAGGGAAAGAGAAGCTTTTAATTATGGAGTTCAGCAGCGCAAGAGAATGTCGCGGCCAAGAGGGAGCCCCATGGCCAATCGCGATCCTCGTTTTAGGTCGCACACTCATGAAAATGAAGGGTATGCCTTTTCATTTGATGATTGACTTGACACTATTTATGCTTTACTCATTAATAATGATCGATAGATAATCCATCGCCTACAACCAGCAGACATAATGGTTCATTAAAACTCTAGATAGACATCATAGACTCTATCTGCTACAATCCTAGAGTTTGATGATGTGAGAACTATCATATGTTAGAGAAATACGTGTCTACATTCATACCCATCTCAATTCAATTAATTTGTTGAGGGGAAATATTATAGAACTAATAAAAAAGAATAAGGAAAAATAATAGAACTTTCCATAGGATACCTTATGAGATCCTGTATTCAATTACAGAATATTTTTTTACCTTATATGCATAGAGAATGCTTACCTGTCTTGTGCAGAATCTTATATGGGTTCCTCTTGTACATTGTTAATCAACTAAATCAATAAAATGTTAAATTTAATTTTCACAAGGTAGTTGAGCCTTTTCGGTCTTGGTAGACATTCATACAGCTTCCACCTATAAGAGACGACCTCATGCCGCCTGCAGGTTATTGTTTTTCTTTTTTCCTTTTTGTTTCCTAGCTATCAACACTCTCATCCACGAGTGGTGTCGACTGCTCTGACCTCGTTTTTCGGCTATTAGCGCTGCTCCTCTCTTTTTCTAGCATGCCGGTCCTCTTTTTCCTGTGACCAATGTCACTACTATCTTCCTGAGGCAACTGCCACTACTCATTTCTGTGGTGATTATTCTGGATGCTTCTCTCTTCAACTACCAATACCACCGGTGTTGCTCTTCTCTACAGCAGACGACCTCCTCCTCTAGACCTTGAATTTTGGTCATTCTTCTGCCAATTCAAGTTTCCGATGATGTCTTGGAGATCTGCGACACCATACCTCTATTCGATTATTGGAAATAGATCATTTTCTGGTTCCAGGTCTTTGGTTCAACGGCAAAGGTAGTACAACGTTGTGTGTGTGGTAGGTGCACGCCACAACTTCGAATCCTATTGGGGAACTAGGTCTTGTGTTTAAATGGAGAAGGATAGGGGTGACCTATTTTCCACAGACTTTGAAGCCTAAACAATAGACTTATCGGTTATAAAAAATAAATAAAAGAAGAGTACATTATTTCTCTGTTTCTGAATTCAATTATATTTTGGAATTCTTCCATTTCCCTGTCCTGAAAATTCCTCCCGTCAAGCAATTCAACTAGGTTATCATAGACTTACTTGTCAAAGAATAATATATGGGATGTGTTAAGTTCATTTTCTTGTCTAGCAACTACAAAATACTCATTTTCTTGTCTTGCAACTACAAATTGTTAATCTGTGTTGAAAAAACTTTCTATAAGTTATTAAGCATGGATTTTATTTCCTTTTAATACCACTTAGATGATATCTGGACATAGATGTTTCTTTGATTGTTATGTAGTGTAACTCTTCTTCTGTCTTTCTGTGCAGATCTCAAGGTAAGCTGTTAAAGTACTTATCTTGGAGTTGTCTCAAATTGGTATCATCCAGGAGGGAGTTGTCCTTGGCATTCATGCTTGCAGATTTGTTTGATTCTGAGAAAATTGCTAATTTAACTAGTTAGACAACATTGATCCCATCTTTTATTGGTTGAGATAGTTTCCATGTTAGGAATTGGTGTTCTTTTGGCCAGCTGTTTCTGCCTTAGGTCGTAGATATTCCTATATGCAAAATCATAGGCTCACATGTTCCTGCTTTTTTCTCCACTTTTCATCATAACTGCTTTTTGTTTCTGTTTATAGGTTCATGAATCTCCTTCTGTAGAAGTGTTATACTCGAACTGTTTTGAATGTCTCGTTGGTCATTCCTTTTCCAGCATGATGAGAAAGGAACTCTGTAGATGTCCTGATTCATTTTCTGCATCTCATGTGCGCATATATTTTTTTTCTTTCTGGATTTACTCCATTGATTGCTTGAACTTGTTTGCACGGTATATCCGGATACTCTATAAGTTTTAGCTATCCTAAATTTTGTATTATTTTGGACCGTGAACTGCAAATTTTGTGCCATTTGTTTGAATTTGTATAACCCTTGTAAATGCCTCCACAGTTATAAAGTTCTGTTGTGCATTAAGATAGTGATGCAGTGACCAATTTCTATGTTTAGTGGCCAAAAAAATCAGTAGTTCGTGACCAAATTAGCATGATGAATAGTTGAAAGCTGTTCCCACCAGAATTAGAGGACTGTCTTACTTGAAATGCTTCAAGTCATATTAGATGACAATGCATATATCTTTTTGCATCGGAGTCTTCTTGTAAAAAACACTTTCTGGCTACATGTTACATGTTAAGTTCACTTCTTACAACCATCTCAAAGGTCGTTTGACTCGTGCGCTTGAATCAGGGGACTGTTTGCTGGATTTTATAAAGCCAATCAACATCGTCAAGCTTGTGCTCTTTCTTTCTTTAGATAACCACCTTTTTTTTTCCAAAAAAATCTCTTTATACCTTTTTTATTCATCAGATTGAGCAGTACTTCGTAACATACTAAGCTTTTCAAAAATAGTCTATCTGTGCAATCTACAATTAATTTAGGAACTAAAAGATCCTTTTACACGAAATCATACCCAAAAATTAACCAGAAAAAAGTACACCAAAACGGAGATTAGGTGAGGTGATTAGGCGAGAAATCTAAGTCATAGTATGATTATCTTTTTCTTTGAGAATATGACTTTTCCTTGTATTTTTGCCTTTTAATAAAGCTGTGAGTTGCATTGATCTCCTTCCTAGTCTGCCAAAATTACAGTGTCCTTCTGATTCTGATGCGTTAATATTTCATTACAAATTTACAAATTCTTCCCTATCCCCGTTTCAAATCAAATCTAAATTGAGGAATGAACATTGGCCAAATTCCTAAATAATCCAAAAAGGTCCACAAAAATTAACAAATTAAGAAGGCTAAGTCAGTCATTATCAGGAGAAAACATGCTATTATATCTGTTTAGCATATATCCGTTCCCATTTTCTTCCTTTGTGTCTTTAGGGAGAATTAGGGAAAGTGACTACTAATTCTTAAGTGTCTGTTTAAGAAAAAATTTAAATTGAAAATGTTAGCTTAACCAAAGTAAAAATAGGTCAGAATTGTTACTTGAGCTCAATCCGTAATCTACGTCGGTGTTTTTTTGTTATATTATTGCACATTGGTTGAGGGAATGAATTGTTGTGTGCTTACATGTCCTTGGGCCTCCTCATGAGCTAGCCTTTGTGATTGAGTAAGGCTTGAGGTTCATTTTATTTACATGGTAGCATAGCTAGAGCCATCCCTATTGTTCCACGCTCCAAGTGTTCCATGAGAGGCTTGGGGGGTAAGTATTAGAATGTCTCACAGTGGCTGAGAGATTGTTGTCTCCGCATATTGTTTCGAACAGTCCTAATATCATGTGCTAACTTTGGAGTTGAGTTAGGCCCAAGGTCCAATTTTTTAAAAAAAATGTCTGCTTATTTTAAACATGAAAACTTTCTATTTTGAATTAGAAAAGTAACAGCCAGACATTACTGGGGATTTTATTTTGTAGTTTCCAGGATTTAATTTTTTTACGTTGTCGACAAAATATAGTGGTAATTGTTACATTTCATATCAACTAAATCAAAGACTCAGATTATCAGCCGCACTTCGTGCGAAACCCAGCTTATAGCATACAGCTGTCATCTCATATTTGTGGAGCTGTCAGATATCACATGTAATCTATTCTAGTAAAGAATGCTATTTGCTTGTTGTGACCCATCACGGTACATCGTATGCTTGAAGTTGCGGATTTGGTACTTGTAACATATGCAAGTGATTCCGATCCATTAAATTCAGACCGGCATACCTACAGATCATATTACTTATATAGTGGAAGGGATTTATGAAATTCCTCTTTTGAGTCTAATCAAAAGAGCAAGTGGATCGAACTGTTTCTTGTCTCTGCTTTGCTTCAGAGTCTATGCGTCTAATGAGTTCTGTGATGATAAGTTCTGTAATTTCTTTTTTCTGTATGAAGTAGCTTGTAATAATAACTTTGATCTCAGATTTTTTGGGAAATATTTGTTGCTTTCACCTGCCATTGAAAAATTAGTCGTCAGTAGGTTAGGATGTTTTTCTAACTGTTTCATCCCAGTATGCTTGCTGCTGTTTTGAAACTGGCCAATTATAGTACAACGACAGAACAGAGGCTGTTTATTGATTAACTGACTAAGATGGGATGCAAAAATTGTTGTTGACTACTTAGTACTCATGCACCATATATAAACAAATGTTTCCTTTGTCTTTGCAGTGAAGCATGATGTATCTGCTGTCAATTACAGAGTTGGTGAGTGTATGCCAGAACTGATTAAATTATGGAAGGAATATGAATCATCCAAAGCAGATGAAGCATCTGATAGCTCTCCAAGTGATCCTACTCTAGAAATTAGGATTCCAGCTGAACACGTATCAGCTACAAATCGGCAGGTAAGATTGGAGTGGTAGCAGAGGATTCATATAACACCTTTTTATGTTTTATTTCATTTTCTTCTATGTGTTCTTCAAAGATAATGATCGTCCTAATTTTAAATAAAATCTCTTTCGATACTCCACTTGGGGGTTTTCCTTTCCGATCATTGAACAAGAAAAAGGGGTTGCACCGGACCCGAGGGTCCTTCGCACACAACCTCTCTATGTCCGTGAGTTAGGGTTAAGGTCTGCATACCACCCTCCCCAAACCCTACTTATGGGATTTCACTCGGTGTGTTCTTGTTGTTGACCAACCAGAATTTTCCGGTGACTCCAAAGTCTAACCAATACGTTGTTCTTTCTTCTTCAAATTTTTTCTTCCTTTTGTTTCTTTTTCTTTCTTCTTCTTCAGGCTTCGCAGTCACTTCTACCTTCTTTTTTTTTCACTGTTTTGATTTTTGTTCTGTTTATTTCTCATTCAACTTTTAAGTATGTACTATCTATTTTTAGTTTTTGAATTAAAATATTTGCTAATATGTTATTGCTATTGAGATTTTTATTATTTTTATATGCAATTAAATATTTTACTTTTTTGTTAATAATTGTGCCGCACTTCAAAAAGGCGGCGCACCTTGCTGCTCGCCTCACCTTTTGGTGAGGCAGACCCTTGTCGCCTTTTGCCATCCAAAACACATTTATTCCAAAAAAAGGAGGGGCTCTATACAGGAGTCTAGCCTAATAAGATAAGTAATTAGCCTATAATTAAATCTAGATATCCTAAGCTATCCTATTGTAGTATTATGTAAGATTGTTCTTAATTACTTCAATAAATCTAGGCATGTGTGAATGTATGCACATATGATATTATTTATAGCCTGTTTGAAGTAAGCCGAGTAACAATAGTTGATAAGCATCAATTGCTGAAAAGCACTTTTAAGTGTTGGAACTGATTTTACATATTAACAGTTACATGTCTGGACATATGTGCTGACATTAATAACAAATAATTGGTATCTTTGGTAAAAATCTCGTTATTTCTGTTTAAAATGACTGAAATACCCTTAAAACTATTTTCAGAAATTATTAAATTTACAAGTGCACATGGAAAAGAGCTAATAGCGCAGTTACCTTTATCTCAAAAAAAAAGAAGAAGAAGAGCTAATTACGGATATCGAAACTAGAAAGGAGGAGATATGGATTTAGTTTTAGGAATGGTACATCAACTGCAACAATCTTTTTTGAGGATAAAAGAGTTAAGAGTCTAGTCAAAGCAAAAGTGCTTAGAAGCTGAAAAGTCATAAGTGACCAACTTATAGCTTTTGCCTGATTTTGACTTACAAGCACTTGGCTTATAAGCTATTTCGGTGTTTCTCAAACACTGAGATAAGCCCAAAAGTGCTTAATAGTTGGTTTGATCAGTTATAAGCTTACTGAACACACCCTCTTAATCTCGTAACAATAAAAAAATTGTGTGCAACATTAGACTGGTCAATTGATGGACCAAATTTGACTCGAGATGCAATAGAAGAGAGCTTCTGAAATCTAATATAAGTGTACCAAGCGTCATCACTCTCTCTCTCTCTCTTATTATGTTGGGTGGATAATACTTGTTCAGCAATTTTATCCGTTGTATGCATATTCCTGCTACTAATTCTGATACACATCTCATATCCCCATGCCTACATCTTTCTCTCAGTCTTATCTCTTGGCTTTGTAGTTTGGATTTGTCTAATTATGTTATATTGTCCTTTGAGTACTACACCATTTGCAGGTGAGAGGTGGCCAACTATGGGGAACAGATATATACACCAATGACTCGGATCTTGTCGCAGGTTTGTCCTTGTCTCAATAATATTAAGGCTCCATTGTGCACTCATGTATGTATGTATGTATGTAGGTAGTTTATGCACTTAGTGAAAGTAAAGGGTAAATTATGAAAAACAACTTAGTTTAGCCCACGGCAGTTTCCAATTACAACTTTCTTGTTTCTCCTTGTGTATTGTGGGAGCGGCTTGTTGTTCTTCCAAAAGGAAAATATTTTTGTTGATTAATTTTTGAGGTATGTTTTGGAAAAAGCTAGAGAATCTATGAAAATCAGATGTAAGGAAATGCATATACCTCTAGACATGCTTTCCAGTTTCCACAATTACATTAAATTTGTGAAATCAGGAGCCTCTAGCTATGCCTCATTCTGGATTTACGGTAGTGCTGGTTTATTCAGGGTTTGTTGTGAAAGAAATGGGCAGTGTGGACTTGGAATAATGAATGGCTGCGCAAGTGTATAGTTATAGCATTTTTTAGTAGTGATAATGGTCTGGTCTGTAGGTGTTTTCTGACAGTGGTGGCAGCTATGCAATATGGTTTGAGACTTAACCTGGAATTGATCATAAAATGAAACTTCCTTGATGTGGGAACATGACAGAGAGAAAAGAGTTGAATATGTGGTAAGAGACAAGCACACAGGTCTATGGATGAGGAGGTGTTTCTTTGGATGGAAGAGAAGAGTATGTAGGAAGTCCTTGTACATGATGAAAAGATGGATTAGATTGGAAGGTGATGAGTTCATCTTGACTTCACTCACCAAATAATTTGCACTAGATAACAAATTCATTGTATGGTAGTTTGATGCATTATGCCACGAACTTCTCCAAACCAACAGTGTTTTAGGGTTTCTAGTTTAAAGGGTACCTTCATGTGGTGGATTCTTTCACTAGTCAAGCTTCCATTGTTCCTCGAATTTTTTAGAAATATGATCTAGTCAATTGGCCTTGTAGATAATTATTCTAAAGGGACAATGTAATTGTCCTGAACTTCCCTTGTTGTTGGTTGTGGTACTGGTTTCTGTTTGTCTTCCATTGAAGAGGCACATATATATGCTCAAATCATATCAATTACTATCAACTTATCTGCTTGTCCATTCAAGCAAACTTGGGAAAACTGTTAAGCCTTGTGCCTCAGAATTGCTTGAGAACTTCCCCATGTACTTTTCCTAGTGATCAGGGACAATACAGATCATGATATCTATTAACTACTGTTTGTCTTGTTTCTCCAGTTCTTATGCACACAGGTTACTGTCGTACAACTGCGTCTCCTCTTTTGCCTACTATTACGGAGTTACGTGCTACTATCAGGGTACTA</genome_strand>
        <mrna_strand>TTGATGTTCCTGGAAAAACAAACGAGCCGGAAAACTCAACAGTGGAGCAGAAGAAACAGAAAGATCATGATAACTGGAAAAATACTGACAGGGATGGAAGTGAGAGGAGAAAGGAAAGAGATACTGATTTGGAAGGAGAGAGGCCTGAGAAACGTGTCAGGTGTCATGATAAAGAACCAGAGGAAGGGGACCTGGATACTGAAGGAGGAGGAGAAAGGGAAAGAGAAGCTTTTAATTATGGAGTTCAGCAGCGCAAGAGAATGTCGCGGCCAAGAGGGAGCCCCATGGCCAATCGCGATCCTCGTTTTAGGTCGCACACTCATGAAAATGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCATGATGTATCTGCTGTCAATTACAGAGTTGGTGAGTGTATGCCAGAACTGATTAAATTATGGAAGGAATATGAATCATCCAAAGCAGATGAAGCATCTGATAGCTCTCCAAGTGATCCTACTCTAGAAATTAGGATTCCAGCTGAACACGTATCAGCTACAAATCGGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAGGTGGCCAACTATGGGGAACAGATATATACACCAATGACTCGGATCTTGTCGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTATGCACACAGGTTACTGTCGTACAACTGCGTCTCCTCTTTTGCCTACTATTACGGAGTTACGTGCTACTATCAGGGTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248997" ref_strand="+" ref_description="SGN-E248997 [cLEF-49-G19]">
      <seq>ttgatgttcctggaaaaacaaacgagccggaaaactcaacagtggagcagaagaaacagaaagatcatgataactggaaaaatactgacagggatggaagtgagaggagaaaggaaagagatactgatttggaaggagagaggcctgagaaacgtgtcaggtgtcatgataaagaaccagaggaaggggacctggatactgaaggaggaggagaaagggaaagagaagcttttaattatggagttcagcagcgcaagagaatgtcgcggccaagagggagccccatggccaatcgcgatcctcgttttaggtcgcacactcatgaaaatgaaggatctcaagtgaagcatgatgtatctgctgtcaattacagagttggtgagtgtatgccagaactgattaaattatggaaggaatatgaatcatccaaagcagatgaagcatctgatagctctccaagtgatcctactctagaaattaggattccagctgaacacgtatcagctacaaatcggcaggtgagaaggggccaactatggggaacagatatatacaccaatgactcggatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="80346" stop="73168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80046" g_stop="79713" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79712" i_stop="78276" i_length="1437">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78275" g_stop="78268" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="342" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78267" i_stop="75452" i_length="2816">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75451" g_stop="75276" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="518" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75275" i_stop="73523" i_length="1753">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73522" g_stop="73468" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="573" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E248997" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80046" e_stop="79713"/>
          <exon e_start="78275" e_stop="78268"/>
          <exon e_start="75451" e_stop="75276"/>
          <exon e_start="73522" e_stop="73468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGTTCCTGGAAAAACAAACGAGCCGGAAAACTCAACAGTGGAGCAGAAGAAACAGAAAGATCATGATAACTGGAAAAATACTGACAGGGATGGAAGTGAGAGGAGAAAGGAAAGAGATACTGATTTGGAAGGAGAGAGGCCTGAGAAACGTGTCAGGTGTCATGATAAAGAACCAGAGGAAGGGGACCTGGATACTGAAGGAGGAGGAGAAAGGGAAAGAGAAGCTTTTAATTATGGAGTTCAGCAGCGCAAGAGAATGTCGCGGCCAAGAGGGAGCCCCATGGCCAATCGCGATCCTCGTTTTAGGTCGCACACTCATGAAAATGAAGGGTATGCCTTTTCATTTGATGATTGACTTGACACTATTTATGCTTTACTCATTAATAATGATCGATAGATAATCCATCGCCTACAACCAGCAGACATAATGGTTCATTAAAACTCTAGATAGACATCATAGACTCTATCTGCTACAATCCTAGAGTTTGATGATGTGAGAACTATCATATGTTAGAGAAATACGTGTCTACATTCATACCCATCTCAATTCAATTAATTTGTTGAGGGGAAATATTATAGAACTAATAAAAAAGAATAAGGAAAAATAATAGAACTTTCCATAGGATACCTTATGAGATCCTGTATTCAATTACAGAATATTTTTTTACCTTATATGCATAGAGAATGCTTACCTGTCTTGTGCAGAATCTTATATGGGTTCCTCTTGTACATTGTTAATCAACTAAATCAATAAAATGTTAAATTTAATTTTCACAAGGTAGTTGAGCCTTTTCGGTCTTGGTAGACATTCATACAGCTTCCACCTATAAGAGACGACCTCATGCCGCCTGCAGGTTATTGTTTTTCTTTTTTCCTTTTTGTTTCCTAGCTATCAACACTCTCATCCACGAGTGGTGTCGACTGCTCTGACCTCGTTTTTCGGCTATTAGCGCTGCTCCTCTCTTTTTCTAGCATGCCGGTCCTCTTTTTCCTGTGACCAATGTCACTACTATCTTCCTGAGGCAACTGCCACTACTCATTTCTGTGGTGATTATTCTGGATGCTTCTCTCTTCAACTACCAATACCACCGGTGTTGCTCTTCTCTACAGCAGACGACCTCCTCCTCTAGACCTTGAATTTTGGTCATTCTTCTGCCAATTCAAGTTTCCGATGATGTCTTGGAGATCTGCGACACCATACCTCTATTCGATTATTGGAAATAGATCATTTTCTGGTTCCAGGTCTTTGGTTCAACGGCAAAGGTAGTACAACGTTGTGTGTGTGGTAGGTGCACGCCACAACTTCGAATCCTATTGGGGAACTAGGTCTTGTGTTTAAATGGAGAAGGATAGGGGTGACCTATTTTCCACAGACTTTGAAGCCTAAACAATAGACTTATCGGTTATAAAAAATAAATAAAAGAAGAGTACATTATTTCTCTGTTTCTGAATTCAATTATATTTTGGAATTCTTCCATTTCCCTGTCCTGAAAATTCCTCCCGTCAAGCAATTCAACTAGGTTATCATAGACTTACTTGTCAAAGAATAATATATGGGATGTGTTAAGTTCATTTTCTTGTCTAGCAACTACAAAATACTCATTTTCTTGTCTTGCAACTACAAATTGTTAATCTGTGTTGAAAAAACTTTCTATAAGTTATTAAGCATGGATTTTATTTCCTTTTAATACCACTTAGATGATATCTGGACATAGATGTTTCTTTGATTGTTATGTAGTGTAACTCTTCTTCTGTCTTTCTGTGCAGATCTCAAGGTAAGCTGTTAAAGTACTTATCTTGGAGTTGTCTCAAATTGGTATCATCCAGGAGGGAGTTGTCCTTGGCATTCATGCTTGCAGATTTGTTTGATTCTGAGAAAATTGCTAATTTAACTAGTTAGACAACATTGATCCCATCTTTTATTGGTTGAGATAGTTTCCATGTTAGGAATTGGTGTTCTTTTGGCCAGCTGTTTCTGCCTTAGGTCGTAGATATTCCTATATGCAAAATCATAGGCTCACATGTTCCTGCTTTTTTCTCCACTTTTCATCATAACTGCTTTTTGTTTCTGTTTATAGGTTCATGAATCTCCTTCTGTAGAAGTGTTATACTCGAACTGTTTTGAATGTCTCGTTGGTCATTCCTTTTCCAGCATGATGAGAAAGGAACTCTGTAGATGTCCTGATTCATTTTCTGCATCTCATGTGCGCATATATTTTTTTTCTTTCTGGATTTACTCCATTGATTGCTTGAACTTGTTTGCACGGTATATCCGGATACTCTATAAGTTTTAGCTATCCTAAATTTTGTATTATTTTGGACCGTGAACTGCAAATTTTGTGCCATTTGTTTGAATTTGTATAACCCTTGTAAATGCCTCCACAGTTATAAAGTTCTGTTGTGCATTAAGATAGTGATGCAGTGACCAATTTCTATGTTTAGTGGCCAAAAAAATCAGTAGTTCGTGACCAAATTAGCATGATGAATAGTTGAAAGCTGTTCCCACCAGAATTAGAGGACTGTCTTACTTGAAATGCTTCAAGTCATATTAGATGACAATGCATATATCTTTTTGCATCGGAGTCTTCTTGTAAAAAACACTTTCTGGCTACATGTTACATGTTAAGTTCACTTCTTACAACCATCTCAAAGGTCGTTTGACTCGTGCGCTTGAATCAGGGGACTGTTTGCTGGATTTTATAAAGCCAATCAACATCGTCAAGCTTGTGCTCTTTCTTTCTTTAGATAACCACCTTTTTTTTTCCAAAAAAATCTCTTTATACCTTTTTTATTCATCAGATTGAGCAGTACTTCGTAACATACTAAGCTTTTCAAAAATAGTCTATCTGTGCAATCTACAATTAATTTAGGAACTAAAAGATCCTTTTACACGAAATCATACCCAAAAATTAACCAGAAAAAAGTACACCAAAACGGAGATTAGGTGAGGTGATTAGGCGAGAAATCTAAGTCATAGTATGATTATCTTTTTCTTTGAGAATATGACTTTTCCTTGTATTTTTGCCTTTTAATAAAGCTGTGAGTTGCATTGATCTCCTTCCTAGTCTGCCAAAATTACAGTGTCCTTCTGATTCTGATGCGTTAATATTTCATTACAAATTTACAAATTCTTCCCTATCCCCGTTTCAAATCAAATCTAAATTGAGGAATGAACATTGGCCAAATTCCTAAATAATCCAAAAAGGTCCACAAAAATTAACAAATTAAGAAGGCTAAGTCAGTCATTATCAGGAGAAAACATGCTATTATATCTGTTTAGCATATATCCGTTCCCATTTTCTTCCTTTGTGTCTTTAGGGAGAATTAGGGAAAGTGACTACTAATTCTTAAGTGTCTGTTTAAGAAAAAATTTAAATTGAAAATGTTAGCTTAACCAAAGTAAAAATAGGTCAGAATTGTTACTTGAGCTCAATCCGTAATCTACGTCGGTGTTTTTTTGTTATATTATTGCACATTGGTTGAGGGAATGAATTGTTGTGTGCTTACATGTCCTTGGGCCTCCTCATGAGCTAGCCTTTGTGATTGAGTAAGGCTTGAGGTTCATTTTATTTACATGGTAGCATAGCTAGAGCCATCCCTATTGTTCCACGCTCCAAGTGTTCCATGAGAGGCTTGGGGGGTAAGTATTAGAATGTCTCACAGTGGCTGAGAGATTGTTGTCTCCGCATATTGTTTCGAACAGTCCTAATATCATGTGCTAACTTTGGAGTTGAGTTAGGCCCAAGGTCCAATTTTTTAAAAAAAATGTCTGCTTATTTTAAACATGAAAACTTTCTATTTTGAATTAGAAAAGTAACAGCCAGACATTACTGGGGATTTTATTTTGTAGTTTCCAGGATTTAATTTTTTTACGTTGTCGACAAAATATAGTGGTAATTGTTACATTTCATATCAACTAAATCAAAGACTCAGATTATCAGCCGCACTTCGTGCGAAACCCAGCTTATAGCATACAGCTGTCATCTCATATTTGTGGAGCTGTCAGATATCACATGTAATCTATTCTAGTAAAGAATGCTATTTGCTTGTTGTGACCCATCACGGTACATCGTATGCTTGAAGTTGCGGATTTGGTACTTGTAACATATGCAAGTGATTCCGATCCATTAAATTCAGACCGGCATACCTACAGATCATATTACTTATATAGTGGAAGGGATTTATGAAATTCCTCTTTTGAGTCTAATCAAAAGAGCAAGTGGATCGAACTGTTTCTTGTCTCTGCTTTGCTTCAGAGTCTATGCGTCTAATGAGTTCTGTGATGATAAGTTCTGTAATTTCTTTTTTCTGTATGAAGTAGCTTGTAATAATAACTTTGATCTCAGATTTTTTGGGAAATATTTGTTGCTTTCACCTGCCATTGAAAAATTAGTCGTCAGTAGGTTAGGATGTTTTTCTAACTGTTTCATCCCAGTATGCTTGCTGCTGTTTTGAAACTGGCCAATTATAGTACAACGACAGAACAGAGGCTGTTTATTGATTAACTGACTAAGATGGGATGCAAAAATTGTTGTTGACTACTTAGTACTCATGCACCATATATAAACAAATGTTTCCTTTGTCTTTGCAGTGAAGCATGATGTATCTGCTGTCAATTACAGAGTTGGTGAGTGTATGCCAGAACTGATTAAATTATGGAAGGAATATGAATCATCCAAAGCAGATGAAGCATCTGATAGCTCTCCAAGTGATCCTACTCTAGAAATTAGGATTCCAGCTGAACACGTATCAGCTACAAATCGGCAGGTAAGATTGGAGTGGTAGCAGAGGATTCATATAACACCTTTTTATGTTTTATTTCATTTTCTTCTATGTGTTCTTCAAAGATAATGATCGTCCTAATTTTAAATAAAATCTCTTTCGATACTCCACTTGGGGGTTTTCCTTTCCGATCATTGAACAAGAAAAAGGGGTTGCACCGGACCCGAGGGTCCTTCGCACACAACCTCTCTATGTCCGTGAGTTAGGGTTAAGGTCTGCATACCACCCTCCCCAAACCCTACTTATGGGATTTCACTCGGTGTGTTCTTGTTGTTGACCAACCAGAATTTTCCGGTGACTCCAAAGTCTAACCAATACGTTGTTCTTTCTTCTTCAAATTTTTTCTTCCTTTTGTTTCTTTTTCTTTCTTCTTCTTCAGGCTTCGCAGTCACTTCTACCTTCTTTTTTTTTCACTGTTTTGATTTTTGTTCTGTTTATTTCTCATTCAACTTTTAAGTATGTACTATCTATTTTTAGTTTTTGAATTAAAATATTTGCTAATATGTTATTGCTATTGAGATTTTTATTATTTTTATATGCAATTAAATATTTTACTTTTTTGTTAATAATTGTGCCGCACTTCAAAAAGGCGGCGCACCTTGCTGCTCGCCTCACCTTTTGGTGAGGCAGACCCTTGTCGCCTTTTGCCATCCAAAACACATTTATTCCAAAAAAAGGAGGGGCTCTATACAGGAGTCTAGCCTAATAAGATAAGTAATTAGCCTATAATTAAATCTAGATATCCTAAGCTATCCTATTGTAGTATTATGTAAGATTGTTCTTAATTACTTCAATAAATCTAGGCATGTGTGAATGTATGCACATATGATATTATTTATAGCCTGTTTGAAGTAAGCCGAGTAACAATAGTTGATAAGCATCAATTGCTGAAAAGCACTTTTAAGTGTTGGAACTGATTTTACATATTAACAGTTACATGTCTGGACATATGTGCTGACATTAATAACAAATAATTGGTATCTTTGGTAAAAATCTCGTTATTTCTGTTTAAAATGACTGAAATACCCTTAAAACTATTTTCAGAAATTATTAAATTTACAAGTGCACATGGAAAAGAGCTAATAGCGCAGTTACCTTTATCTCAAAAAAAAAGAAGAAGAAGAGCTAATTACGGATATCGAAACTAGAAAGGAGGAGATATGGATTTAGTTTTAGGAATGGTACATCAACTGCAACAATCTTTTTTGAGGATAAAAGAGTTAAGAGTCTAGTCAAAGCAAAAGTGCTTAGAAGCTGAAAAGTCATAAGTGACCAACTTATAGCTTTTGCCTGATTTTGACTTACAAGCACTTGGCTTATAAGCTATTTCGGTGTTTCTCAAACACTGAGATAAGCCCAAAAGTGCTTAATAGTTGGTTTGATCAGTTATAAGCTTACTGAACACACCCTCTTAATCTCGTAACAATAAAAAAATTGTGTGCAACATTAGACTGGTCAATTGATGGACCAAATTTGACTCGAGATGCAATAGAAGAGAGCTTCTGAAATCTAATATAAGTGTACCAAGCGTCATCACTCTCTCTCTCTCTCTTATTATGTTGGGTGGATAATACTTGTTCAGCAATTTTATCCGTTGTATGCATATTCCTGCTACTAATTCTGATACACATCTCATATCCCCATGCCTACATCTTTCTCTCAGTCTTATCTCTTGGCTTTGTAGTTTGGATTTGTCTAATTATGTTATATTGTCCTTTGAGTACTACACCATTTGCAGGTGAGAGGTGGCCAACTATGGGGAACAGATATATACACCAATGACTCGGATCTTG</genome_strand>
        <mrna_strand>TTGATGTTCCTGGAAAAACAAACGAGCCGGAAAACTCAACAGTGGAGCAGAAGAAACAGAAAGATCATGATAACTGGAAAAATACTGACAGGGATGGAAGTGAGAGGAGAAAGGAAAGAGATACTGATTTGGAAGGAGAGAGGCCTGAGAAACGTGTCAGGTGTCATGATAAAGAACCAGAGGAAGGGGACCTGGATACTGAAGGAGGAGGAGAAAGGGAAAGAGAAGCTTTTAATTATGGAGTTCAGCAGCGCAAGAGAATGTCGCGGCCAAGAGGGAGCCCCATGGCCAATCGCGATCCTCGTTTTAGGTCGCACACTCATGAAAATGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCATGATGTATCTGCTGTCAATTACAGAGTTGGTGAGTGTATGCCAGAACTGATTAAATTATGGAAGGAATATGAATCATCCAAAGCAGATGAAGCATCTGATAGCTCTCCAAGTGATCCTACTCTAGAAATTAGGATTCCAGCTGAACACGTATCAGCTACAAATCGGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAGGGGCCAACTATGGGGAACAGATATATACACCAATGACTCGGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277844" ref_strand="+" ref_description="SGN-E277844 [cLEL-5-I8](-)">
      <seq>tccaaatcagtatatctttcctttctcctctcacttccatccctgtcagtatttttccagttatcatgatctttctgtttcttctgctccactgttgagttttccggctcgtttgtttttccaggaacatcaatcaattctttctcactctgcaaaacctcccgcgccactccattccacacttccctctttgcatggtccttttcccagtcctttggtctgtccttatccttcgaaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="79614" stop="80451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79914" g_stop="80159" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E277844" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79914" e_stop="80159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAATCAGTATCTCTTTCCTTTCTCCTCTCACTTCCATCCCTGTCAGTATTTTTCCAGTTATCATGATCTTTCTGTTTCTTCTGCTCCACTGTTGAGTTTTCCGGCTCGTTTGTTTTTCCAGGAACATCAATCACTTCTTTCTCACTCTGCAAAACCTCCCTCTCCACTCCATTCCACACTTCCCTCTTTGCATGGTCCTTTTCCCAGTCCTTTGGTCTGTCCTTATCCTTCGAAAGATCATTT</genome_strand>
        <mrna_strand>TCCAAATCAGTATATCTTTCCTTTCTCCTCTCACTTCCATCCCTGTCAGTATTTTTCCAGTTATCATGATCTTTCTGTTTCTTCTGCTCCACTGTTGAGTTTTCCGGCTCGTTTGTTTTTCCAGGAACATCAATCAATTCTTTCTCACTCTGCAAAACCTCCCGCGCCACTCCATTCCACACTTCCCTCTTTGCATGGTCCTTTTCCCAGTCCTTTGGTCTGTCCTTATCCTTCGAAA-CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723825" ref_strand="+" ref_description="SGN-E723825 [FC22AD03]">
      <seq>tgaattttttcgctccttcttttgctgcatcttcaccgccggttgtggttctttaggttccttaatttatatgctgaaaaagccagaatatgagtggtactccgaacaaaagacctcacgaggatggcggaaatggtgggagtagtaaccatagttactcttctgctccaaaatactcacatgatgactctggtgcatttcccaaggtgatgagctcaggaacacctgaatatcatgcctcctttgatgagggccagaatgctcggatgccgaaaattcaacggactgaatcttcacaagatgcaaatagaagatctcctgtgcttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="82495" stop="80510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82195" g_stop="82155" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82154" i_stop="81098" i_length="1057">
            <donor d_prob="0.807" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81097" g_stop="80810" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="329" r_length="288" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-E723825" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82195" e_stop="82155"/>
          <exon e_start="81097" e_stop="80810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTTTTCGCTCCTTCTTTTGCTGCATCTTCGCCGCCGGTAAGGTGAACGGAAAGTTCACTACTTTTTATTTTGGGGATTTTCTTGATTTTTGCTGTTCTGTGTGTATATAATTAGATTCAAAGATTTAGCTTTTTTTTGCTTGTCTAGGTTTTTTCGGTTTGCAAATCGTATGTTAATGAAATGGAATTGGAAATCGCTGAAGAATTGTTGTGGCCTCGTGATAAGCTTCTGAATGTTAAATTCTTTTGAGATAAAGAGAACTTTGAATTTGCTTGAAATGATTAATTTTTTAGTGTTGGGATGGAATTGGAAAACCTAACTGATTTTAGAGTGAGCTCTAGTTGATTGATTGATTAATCACTGTGGTTTTTGCTGTATTGGGTGTATGTAATTAGATTTAGAGATTTAGTTGGGTTTATCTGTGTTCTTTCTGATATACTATTGTTATGAAATGGGATTGGGAACTGCTGGAAAATTGAAAATGTTAATTCTTTTGAGATGTAGAGAATTCTGAATTTGCTTGAAATGACAAGCTTTTTTAAGTGTTAGTATGAATTTGGAAAGCCTAACTAATTTTGTAGTGATGCATAGTTGATTGATTACTCAGAGTCTTTTTTTTTTTTTAGTATTTTTGTTTTTCCTCCCTTTGATGGCGTGTTGGTTGAACTAAAAATTAATCTGTATAGGGAAGATAGGTATGATACTGATTGAATCGAAATGGAAATGCTGGTCCACCAATTATGTTTGCTCATTATTATATCAAATTTTGAATTTCATAAGCTTGCTACTAACCAAAGATATAAAAGATGATATCTTGCCTTTAATTGAAAAAGATGATACTTGCCTTTAATTGAATTCACAAAATAGAAATAAGATCTATGGTTGTAGAATTTTATTGAGACATGAAGCTAGCTTGCAAGATCGTCACTATCATGTGAATGTTACTTATAAATGGTTTTGCATTTATTAAGCTGTTCGTGGATTTGGTGAAAAGTTTATAGATTTGTTTGCCTAAACATGGTTTTAGTTGTTATTTTCTCAGAACAACATCAATATAGGTGGATGACATTCATCAGGTTTTAATGTTTTGCAGGTTGTGGTTCTTTAGGTTCCTTAATTTATATGCTGAAAAAGCCAGAATATGAGTGGTACTCCGAACAAAAGACCTCACGAGGATGGTGGAAATGGTGGGAGTAGTAACCATAGTTACTCTTCTGCTCCAAAATACTCACATGATGACTCTGGTGCATTTCCCAAGGTGATGAGCTCAGGAACACCTGAATATCATGCCTCCTTTGATGTGGGCCAGAATGCTCGGATGCCGAAGATTCAACGGACTGAATCTTCACGAGATGCAGATAGAAGATCTCCTGTGCTTCCA</genome_strand>
        <mrna_strand>TGAATTTTTTCGCTCCTTCTTTTGCTGCATCTTCACCGCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGTTCTTTAGGTTCCTTAATTTATATGCTGAAAAAGCCAGAATATGAGTGGTACTCCGAACAAAAGACCTCACGAGGATGGCGGAAATGGTGGGAGTAGTAACCATAGTTACTCTTCTGCTCCAAAATACTCACATGATGACTCTGGTGCATTTCCCAAGGTGATGAGCTCAGGAACACCTGAATATCATGCCTCCTTTGATGAGGGCCAGAATGCTCGGATGCCGAAAATTCAACGGACTGAATCTTCACAAGATGCAAATAGAAGATCTCCTGTGCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271731" ref_strand="+" ref_description="SGN-E271731 [cLEM-23-J20]">
      <seq>tttgatttcctggcattcaagaatgatattcaattttggaataaaaacaagtccatggaagggctatctgcaaaatcagtggtcgtgaactttttctgccagtttattgtcttcctgtatttgcttgataatgatacttcatggatgatacttgcaagttctggtgttggttgttgcattgagttctggaaaatagggaaggccatgcacattgagattgacagatctggtagaatacccatgttgaggttccgagatcgggaatcatatgctggaaataagactaaagaatatgatgatcttgccatgaaatatttgtcttatgtgctgttcttccttgccgtgtgctttgccatatactctctaatgtatgaccgccccaagagttggtattcatggatcctctcatccctgacaagctgtgtttatatgtttgggtttgttatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="87507" stop="89132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87807" g_stop="87831" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87832" i_stop="87911" i_length="80">
            <donor d_prob="0.913" d_score="0.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87912" g_stop="88102" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="216" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88103" i_stop="88605" i_length="503">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88606" g_stop="88825" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="436" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88826" i_stop="89117" i_length="292">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89118" g_stop="89132" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="451" r_length="15" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E271731" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87807" e_stop="87831"/>
          <exon e_start="87912" e_stop="88102"/>
          <exon e_start="88606" e_stop="88825"/>
          <exon e_start="89118" e_stop="89132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTCCTGGCATTCAAGAATGGTAAGTATAGTAGCCTTCTAAGGTAATTACAGTAAGTGTGGAGTAGATTGGATTCAGACTATATTTGATTTTCCTTGTAGATATTCAATTTTGGAATAAAAACAAGTCCATGGAAGGGCTATCTGCAAAATCAGTGGTCGTGAACTTTTTCTGCCAGTTTATTGTCTTCCTGTATTTGCTTGATAATGATACTTCATGGATGATACTTGCAAGTTCTGGTGTTGGTTGTTGCATTGAGTTCTGGAAAATAGGGAAGGCCATGCACATTGAGGTATGATCACTAATAATGGAGTCAAGTTTTTGTTTAGCTCTTTTATTACCAGTGGTTGTAATAATATCATCATGTTTTCATACTGGTGTTTGATTGTCGGTTCTCTCCATTATTTACTGTTACAATGGCTGGAAGTTTGAGTCAAGGTTGAATGGATATCTCTATTTTTTTCTCAATCATCCAAATTAATTCATTGTTTACACTTAGATTCTTCTTTATTGACAAGTGTTCAGGAGACACACACACACACTCTTACAAAGTTTCATGTGCTCTTATCTTACATAATTGCTCCTAGTGGGGTTCCCATAATCTTTACTTTGATGAACTTGGAAATTTGAGTTGCTTGGGGATAGAATTCTAGATGGGACTTGTGATTAATAATTGAGAATTCAAACTTATCAATATCTTATTCAGAACAAATGCTTCTCTTTGACATACAGTTACTGATTAAGCGCAAACTCTAATCACCAGTAGTTTTATTGATAATTGTCCTTGATTTCTAGATTGACAGATCTGGTAGAATACCCATGTTGAGGTTCCGAGATCGGGAATCATATGCTGGAAATAAGACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCACAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGTTTATATGTTTGGTAAGTTTCTGTCTGTCTTTTCTTATAATTGCTCTCCATTTTTCTGGACTCTCTATCTTCTGGTATCTAGGATCTAGTAACGTAGTTTTGAGCCTCGCGATGCTCTAACAGTTGATGATCTTGCAGCTGATATTACAATTTCATTGAATAGATACGTTGAGATGTAGTGCACAGTTTGCACTTTCGATAAGCTTGTATCTTAAAACCATTTTAAGCAGGGACTTCTAATACCATATTCTCCTGTCACTTTGCTTTTTCTTAATCTAATTATTTTCAATTACTACTGCTGCAGGTTTTGTTATGATGT</genome_strand>
        <mrna_strand>TTTGATTTCCTGGCATTCAAGAATG................................................................................ATATTCAATTTTGGAATAAAAACAAGTCCATGGAAGGGCTATCTGCAAAATCAGTGGTCGTGAACTTTTTCTGCCAGTTTATTGTCTTCCTGTATTTGCTTGATAATGATACTTCATGGATGATACTTGCAAGTTCTGGTGTTGGTTGTTGCATTGAGTTCTGGAAAATAGGGAAGGCCATGCACATTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAGATCTGGTAGAATACCCATGTTGAGGTTCCGAGATCGGGAATCATATGCTGGAAATAAGACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCCCAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGTTTATATGTTTG....................................................................................................................................................................................................................................................................................................GGTTTGTTATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542850" ref_strand="+" ref_description="SGN-E542850 [TUS-64-F20]">
      <seq>ggcattcaagaatgatattcaattttggaataaaaacaagtccatggaagggctatctgcaaaatcagtggtcgtgaactttttctgccagtttattgtcttcctgtatttgcttgataatgatacttcatggatgatacttgcaagttctggtgttggttgttgcattgagttctggaaaatagggaaggccatgcacattgagattgacagatctggtagaatacccatgttgaggttccgagatcgggaatcatatgctggaaataagactaaagaatatgatgatcttgccatgaaatatttgtcttatgtgctgttcttccttgccgtgtgctttgccatatactctctaatgtatgaccgccacaagagttggtattcatggatcctctcatccctgacaagctgtgtttatatgtttggttttgttatgatgtgtccacagttgttcatcaattataaactgaagtctgttgctcatttaccttggaggcaaatgacctacaaatttcttaataccatcattgatgatttgtttgcatttgtgataaaaatgccaatgcttcatcgcctgtctgtgttccgtgatgatcttatatttttgatatacctatatcagagatgggtttatccagtagataagaaacgggtgaatgagtttggttttgctgcggaagatgtggatcaagctgccagtagttcagatactcccgcacttaaagaagacgagaagaaacttactaatctaaatctctcacttaggcttcagtacnacatacttcttgttttggatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="87602" stop="90456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87818" g_stop="87831" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87832" i_stop="87911" i_length="80">
            <donor d_prob="0.913" d_score="0.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87912" g_stop="88102" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="205" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88103" i_stop="88605" i_length="503">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88606" g_stop="88825" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="425" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88826" i_stop="89117" i_length="292">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89118" g_stop="89285" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="593" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89286" i_stop="89949" i_length="664">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89950" g_stop="90156" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="799" r_length="206" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E542850" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87818" e_stop="87831"/>
          <exon e_start="87912" e_stop="88102"/>
          <exon e_start="88606" e_stop="88825"/>
          <exon e_start="89118" e_stop="89285"/>
          <exon e_start="89950" e_stop="90156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTCAAGAATGGTAAGTATAGTAGCCTTCTAAGGTAATTACAGTAAGTGTGGAGTAGATTGGATTCAGACTATATTTGATTTTCCTTGTAGATATTCAATTTTGGAATAAAAACAAGTCCATGGAAGGGCTATCTGCAAAATCAGTGGTCGTGAACTTTTTCTGCCAGTTTATTGTCTTCCTGTATTTGCTTGATAATGATACTTCATGGATGATACTTGCAAGTTCTGGTGTTGGTTGTTGCATTGAGTTCTGGAAAATAGGGAAGGCCATGCACATTGAGGTATGATCACTAATAATGGAGTCAAGTTTTTGTTTAGCTCTTTTATTACCAGTGGTTGTAATAATATCATCATGTTTTCATACTGGTGTTTGATTGTCGGTTCTCTCCATTATTTACTGTTACAATGGCTGGAAGTTTGAGTCAAGGTTGAATGGATATCTCTATTTTTTTCTCAATCATCCAAATTAATTCATTGTTTACACTTAGATTCTTCTTTATTGACAAGTGTTCAGGAGACACACACACACACTCTTACAAAGTTTCATGTGCTCTTATCTTACATAATTGCTCCTAGTGGGGTTCCCATAATCTTTACTTTGATGAACTTGGAAATTTGAGTTGCTTGGGGATAGAATTCTAGATGGGACTTGTGATTAATAATTGAGAATTCAAACTTATCAATATCTTATTCAGAACAAATGCTTCTCTTTGACATACAGTTACTGATTAAGCGCAAACTCTAATCACCAGTAGTTTTATTGATAATTGTCCTTGATTTCTAGATTGACAGATCTGGTAGAATACCCATGTTGAGGTTCCGAGATCGGGAATCATATGCTGGAAATAAGACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCACAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGTTTATATGTTTGGTAAGTTTCTGTCTGTCTTTTCTTATAATTGCTCTCCATTTTTCTGGACTCTCTATCTTCTGGTATCTAGGATCTAGTAACGTAGTTTTGAGCCTCGCGATGCTCTAACAGTTGATGATCTTGCAGCTGATATTACAATTTCATTGAATAGATACGTTGAGATGTAGTGCACAGTTTGCACTTTCGATAAGCTTGTATCTTAAAACCATTTTAAGCAGGGACTTCTAATACCATATTCTCCTGTCACTTTGCTTTTTCTTAATCTAATTATTTTCAATTACTACTGCTGCAGGTTTTGTTATGATGTGTCCACAGTTGTTCATCAATTATAAACTGAAGTCTGTTGCTCATTTACCTTGGAGGCAAATGACCTACAAATTTCTTAATACCATCATTGATGATTTGTTTGCATTTGTGATAAAAATGCCAATGCTTCATCGCCTGTCTGTGTTCCGTGATGGTAAGTTTTTGAAGTAAATTCCTTTGTAGTCCATTGATTGTTTTTATTGGGTTAAGCAGCGGCGTCGTTCTCTTCTGTGACCAAGCTAGTATTTCCTGTTCAATGCTGTACATGAATTCATATTTGTATCATAAACTCAAAGCCTGAGAACGTTGTACACTCTCTTTAGATAGATTCATTGACCATCTCAAGATCTTGAAAATGTCTTTGTTAACCAAGTAACCAGCTAGATAAGAACATCCATGGGTAATGATCCATGCTAGTATTTTTTTAAGATGTCAAGTATGTGTTTTCAATGTTAGAGAATTCAATATTTGTTACTATTCACATCTTTGCAGATGCTCGAGCTCTCTAACCATTATAAAAGATGAACTTGGTTCTTTAATTGCTACAGCTCATATGCTGGATTTACGTTAAAGTTTGCCATTTATAGGTACTGATAATTATTGTGTTAAAGAAAGGAGTGGTAAATAAACAGTCTCTGGATGCTACTGTTCCTTTTAAGCTTTTACATCAGTTTAGATGATGTTGAGCCAGTAATTTTTGTGGCCGTCTTGTTTTAAAAGTCTATCATTACAAATGTTCTATGTGTTTCTTTTGCTCTATTCTGTGCATTAGCTTTCACTCGATTGGATTACTGATATCATCTGCCTTTGCCATGCAGATCTTATATTTTTGATATACCTATATCAGAGATGGGTTTATCCAGTAGATAAGAAACGGGTGAATGAGTTTGGTTTTGCTGCGGAAGATGTGGATCAAGCTGCCAGTAGTTCAGATACTCCCGCACTTAAAGAAGACGAGAAGAAAACTAACTAATCTAAATCTCTCACTTAGGCTTCAGTACAACATACTTCTTGTTTTGGATGAA</genome_strand>
        <mrna_strand>GGCATTCAAGAATG................................................................................ATATTCAATTTTGGAATAAAAACAAGTCCATGGAAGGGCTATCTGCAAAATCAGTGGTCGTGAACTTTTTCTGCCAGTTTATTGTCTTCCTGTATTTGCTTGATAATGATACTTCATGGATGATACTTGCAAGTTCTGGTGTTGGTTGTTGCATTGAGTTCTGGAAAATAGGGAAGGCCATGCACATTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAGATCTGGTAGAATACCCATGTTGAGGTTCCGAGATCGGGAATCATATGCTGGAAATAAGACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCACAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGTTTATATGTTTG....................................................................................................................................................................................................................................................................................................GTTTTGTTATGATGTGTCCACAGTTGTTCATCAATTATAAACTGAAGTCTGTTGCTCATTTACCTTGGAGGCAAATGACCTACAAATTTCTTAATACCATCATTGATGATTTGTTTGCATTTGTGATAAAAATGCCAATGCTTCATCGCCTGTCTGTGTTCCGTGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTATATTTTTGATATACCTATATCAGAGATGGGTTTATCCAGTAGATAAGAAACGGGTGAATGAGTTTGGTTTTGCTGCGGAAGATGTGGATCAAGCTGCCAGTAGTTCAGATACTCCCGCACTTAAAGAAGACGAGAAG-AAACTTACTAATCTAAATCTCTCACTTAGGCTTCAGTACNACATACTTCTTGTTTTGGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301872" ref_strand="+" ref_description="SGN-E301872 [cLEW-25-M12]">
      <seq>gcattcaagaatgatattcaattttggaataaaaacaagtccatggaagggctatctgcaaaatcagtggtgcgcgaactttttctgccagtttattgtcttcctgtatttgcttgataatgatacttcatggatgatacttgcaagtcctggtgttggttgttgcattgagttctggaaaatagggaaggccatgcacattgagattgacagatctggtggaatacccatgttgaggttcctagatcgggaatcatatgctggaaataacactaaagaatatgatgatcttgccatgaaatatttgtcttatgtgctgttcttccttgccgtgtgctttgccatatactctctaatgtatgaccgccacaagagttggtattcatggatcctctcatccctgacaagctgtgattatatgtccggttttggcatgatgtgtccacagctgttcatcaattataaactgaactctgttgctcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="87602" stop="89478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87819" g_stop="87831" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87832" i_stop="87911" i_length="80">
            <donor d_prob="0.913" d_score="0.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87912" g_stop="88102" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="205" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88103" i_stop="88605" i_length="503">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88606" g_stop="88825" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="425" r_length="220" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88826" i_stop="89117" i_length="292">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.927" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89118" g_stop="89178" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="486" r_length="61" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E301872" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87819" e_stop="87831"/>
          <exon e_start="87912" e_stop="88102"/>
          <exon e_start="88606" e_stop="88825"/>
          <exon e_start="89118" e_stop="89178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCAAGAATGGTAAGTATAGTAGCCTTCTAAGGTAATTACAGTAAGTGTGGAGTAGATTGGATTCAGACTATATTTGATTTTCCTTGTAGATATTCAATTTTGGAATAAAAACAAGTCCATGGAAGGGCTATCTGCAAAATCAGTGGT-CGTGAACTTTTTCTGCCAGTTTATTGTCTTCCTGTATTTGCTTGATAATGATACTTCATGGATGATACTTGCAAGTTCTGGTGTTGGTTGTTGCATTGAGTTCTGGAAAATAGGGAAGGCCATGCACATTGAGGTATGATCACTAATAATGGAGTCAAGTTTTTGTTTAGCTCTTTTATTACCAGTGGTTGTAATAATATCATCATGTTTTCATACTGGTGTTTGATTGTCGGTTCTCTCCATTATTTACTGTTACAATGGCTGGAAGTTTGAGTCAAGGTTGAATGGATATCTCTATTTTTTTCTCAATCATCCAAATTAATTCATTGTTTACACTTAGATTCTTCTTTATTGACAAGTGTTCAGGAGACACACACACACACTCTTACAAAGTTTCATGTGCTCTTATCTTACATAATTGCTCCTAGTGGGGTTCCCATAATCTTTACTTTGATGAACTTGGAAATTTGAGTTGCTTGGGGATAGAATTCTAGATGGGACTTGTGATTAATAATTGAGAATTCAAACTTATCAATATCTTATTCAGAACAAATGCTTCTCTTTGACATACAGTTACTGATTAAGCGCAAACTCTAATCACCAGTAGTTTTATTGATAATTGTCCTTGATTTCTAGATTGACAGATCTGGTAGAATACCCATGTTGAGGTTCCGAGATCGGGAATCATATGCTGGAAATAAGACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCACAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGTTTATATGTTTGGTAAGTTTCTGTCTGTCTTTTCTTATAATTGCTCTCCATTTTTCTGGACTCTCTATCTTCTGGTATCTAGGATCTAGTAACGTAGTTTTGAGCCTCGCGATGCTCTAACAGTTGATGATCTTGCAGCTGATATTACAATTTCATTGAATAGATACGTTGAGATGTAGTGCACAGTTTGCACTTTCGATAAGCTTGTATCTTAAAACCATTTTAAGCAGGGACTTCTAATACCATATTCTCCTGTCACTTTGCTTTTTCTTAATCTAATTATTTTCAATTACTACTGCTGCAGGTTTTGTTATGATGTGTCCACAGTTGTTCATCAATTATAAACTGAAGTCTGTTGCTCATTT</genome_strand>
        <mrna_strand>GCATTCAAGAATG................................................................................ATATTCAATTTTGGAATAAAAACAAGTCCATGGAAGGGCTATCTGCAAAATCAGTGGTGCGCGAACTTTTTCTGCCAGTTTATTGTCTTCCTGTATTTGCTTGATAATGATACTTCATGGATGATACTTGCAAGTCCTGGTGTTGGTTGTTGCATTGAGTTCTGGAAAATAGGGAAGGCCATGCACATTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAGATCTGGTGGAATACCCATGTTGAGGTTCCTAGATCGGGAATCATATGCTGGAAATAACACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCACAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGATTATATGTCCG....................................................................................................................................................................................................................................................................................................GTTTTGGCATGATGTGTCCACAGCTGTTCATCAATTATAAACTGAACTCTGTTGCTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705061" ref_strand="+" ref_description="SGN-E705061 [FA26AC02]">
      <seq>caaaatcagtggtcgtgaactttttctgccagtttattgtcttcctgtatttgcttgataatgatacttcatggatgatacttgcaagttctggtgttggttgttgcattgagttctggaaaatagggaaggccatgcacattgagattgacagatctggtagaatacccatgttgaggttccgagatcgggaatcatatgctggaaataagactaaagaatatgatgatcttgccatgaaatatttgtcttatgtgctgttcttccttgccgtgtgctttgccatatactctctaatgtatgaccgccacaagagttggtattcatggatcctctcatccctgacaagctgtgtttatatgtttggttttgttatgatgtgtccacagttgttcatcaattataaactgaagtctgttgctcatttaccttggaggcaaatgacctacaaatttcttaataccatcattgatgatttgtttgcatttgtgataaaaatgccaatgcttcatcgcctgtctgtgttccgtgatgatcttatatttttgatatacctatatcagagatgggtttatccagtagataagaaacgggtgaatgagtttggttttgctgcggaagatgtggatcaagctgccagtagttcagatactcccgcacttaaagaagacgagaagaaaactaactaatctaaatctctcacttaggcttcagtacaacatacttcttgttttggatgaactcaacacctgcaacgatgatgagttgcttcangacgtttagtaatttctcaggatctttggttacaatattcagattcgagtaacttaatcgagaattggaaatgacaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="87657" stop="90569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87957" g_stop="88102" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88103" i_stop="88605" i_length="503">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88606" g_stop="88825" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="366" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88826" i_stop="89117" i_length="292">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89118" g_stop="89285" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="534" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89286" i_stop="89949" i_length="664">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89950" g_stop="90269" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="854" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E705061" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87957" e_stop="88102"/>
          <exon e_start="88606" e_stop="88825"/>
          <exon e_start="89118" e_stop="89285"/>
          <exon e_start="89950" e_stop="90269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCAGTGGTCGTGAACTTTTTCTGCCAGTTTATTGTCTTCCTGTATTTGCTTGATAATGATACTTCATGGATGATACTTGCAAGTTCTGGTGTTGGTTGTTGCATTGAGTTCTGGAAAATAGGGAAGGCCATGCACATTGAGGTATGATCACTAATAATGGAGTCAAGTTTTTGTTTAGCTCTTTTATTACCAGTGGTTGTAATAATATCATCATGTTTTCATACTGGTGTTTGATTGTCGGTTCTCTCCATTATTTACTGTTACAATGGCTGGAAGTTTGAGTCAAGGTTGAATGGATATCTCTATTTTTTTCTCAATCATCCAAATTAATTCATTGTTTACACTTAGATTCTTCTTTATTGACAAGTGTTCAGGAGACACACACACACACTCTTACAAAGTTTCATGTGCTCTTATCTTACATAATTGCTCCTAGTGGGGTTCCCATAATCTTTACTTTGATGAACTTGGAAATTTGAGTTGCTTGGGGATAGAATTCTAGATGGGACTTGTGATTAATAATTGAGAATTCAAACTTATCAATATCTTATTCAGAACAAATGCTTCTCTTTGACATACAGTTACTGATTAAGCGCAAACTCTAATCACCAGTAGTTTTATTGATAATTGTCCTTGATTTCTAGATTGACAGATCTGGTAGAATACCCATGTTGAGGTTCCGAGATCGGGAATCATATGCTGGAAATAAGACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCACAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGTTTATATGTTTGGTAAGTTTCTGTCTGTCTTTTCTTATAATTGCTCTCCATTTTTCTGGACTCTCTATCTTCTGGTATCTAGGATCTAGTAACGTAGTTTTGAGCCTCGCGATGCTCTAACAGTTGATGATCTTGCAGCTGATATTACAATTTCATTGAATAGATACGTTGAGATGTAGTGCACAGTTTGCACTTTCGATAAGCTTGTATCTTAAAACCATTTTAAGCAGGGACTTCTAATACCATATTCTCCTGTCACTTTGCTTTTTCTTAATCTAATTATTTTCAATTACTACTGCTGCAGGTTTTGTTATGATGTGTCCACAGTTGTTCATCAATTATAAACTGAAGTCTGTTGCTCATTTACCTTGGAGGCAAATGACCTACAAATTTCTTAATACCATCATTGATGATTTGTTTGCATTTGTGATAAAAATGCCAATGCTTCATCGCCTGTCTGTGTTCCGTGATGGTAAGTTTTTGAAGTAAATTCCTTTGTAGTCCATTGATTGTTTTTATTGGGTTAAGCAGCGGCGTCGTTCTCTTCTGTGACCAAGCTAGTATTTCCTGTTCAATGCTGTACATGAATTCATATTTGTATCATAAACTCAAAGCCTGAGAACGTTGTACACTCTCTTTAGATAGATTCATTGACCATCTCAAGATCTTGAAAATGTCTTTGTTAACCAAGTAACCAGCTAGATAAGAACATCCATGGGTAATGATCCATGCTAGTATTTTTTTAAGATGTCAAGTATGTGTTTTCAATGTTAGAGAATTCAATATTTGTTACTATTCACATCTTTGCAGATGCTCGAGCTCTCTAACCATTATAAAAGATGAACTTGGTTCTTTAATTGCTACAGCTCATATGCTGGATTTACGTTAAAGTTTGCCATTTATAGGTACTGATAATTATTGTGTTAAAGAAAGGAGTGGTAAATAAACAGTCTCTGGATGCTACTGTTCCTTTTAAGCTTTTACATCAGTTTAGATGATGTTGAGCCAGTAATTTTTGTGGCCGTCTTGTTTTAAAAGTCTATCATTACAAATGTTCTATGTGTTTCTTTTGCTCTATTCTGTGCATTAGCTTTCACTCGATTGGATTACTGATATCATCTGCCTTTGCCATGCAGATCTTATATTTTTGATATACCTATATCAGAGATGGGTTTATCCAGTAGATAAGAAACGGGTGAATGAGTTTGGTTTTGCTGCGGAAGATGTGGATCAAGCTGCCAGTAGTTCAGATACTCCCGCACTTAAAGAAGACGAGAAGAAAACTAACTAATCTAAATCTCTCACTTAGGCTTCAGTACAACATACTTCTTGTTTTGGATGAACTCAACACCTGCAACGATGATGAGTTGCTTCAGGACGTTTAGTAATTTCTCAGGATCTTTGGTTACAATATTCAGATTCGAGTAACTTAATCGAGAATTGGAAATGACAACAG</genome_strand>
        <mrna_strand>CAAAATCAGTGGTCGTGAACTTTTTCTGCCAGTTTATTGTCTTCCTGTATTTGCTTGATAATGATACTTCATGGATGATACTTGCAAGTTCTGGTGTTGGTTGTTGCATTGAGTTCTGGAAAATAGGGAAGGCCATGCACATTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAGATCTGGTAGAATACCCATGTTGAGGTTCCGAGATCGGGAATCATATGCTGGAAATAAGACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCACAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGTTTATATGTTTG....................................................................................................................................................................................................................................................................................................GTTTTGTTATGATGTGTCCACAGTTGTTCATCAATTATAAACTGAAGTCTGTTGCTCATTTACCTTGGAGGCAAATGACCTACAAATTTCTTAATACCATCATTGATGATTTGTTTGCATTTGTGATAAAAATGCCAATGCTTCATCGCCTGTCTGTGTTCCGTGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTATATTTTTGATATACCTATATCAGAGATGGGTTTATCCAGTAGATAAGAAACGGGTGAATGAGTTTGGTTTTGCTGCGGAAGATGTGGATCAAGCTGCCAGTAGTTCAGATACTCCCGCACTTAAAGAAGACGAGAAGAAAACTAACTAATCTAAATCTCTCACTTAGGCTTCAGTACAACATACTTCTTGTTTTGGATGAACTCAACACCTGCAACGATGATGAGTTGCTTCANGACGTTTAGTAATTTCTCAGGATCTTTGGTTACAATATTCAGATTCGAGTAACTTAATCGAGAATTGGAAATGACAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303209" ref_strand="+" ref_description="SGN-E303209 [cLEX-5-C15]">
      <seq>tagaatacccatgttgaggttccgagatcgggaatcatatgctggaaataagactaaagaatatgatgatcttgccatgaaatatttgtcttatgtgctgttcttccttgccgtgtgctttgccatatactctctaatgtatgaccgccacaagagttggtattcatggatcctctcatccctgacaagctgtgtttatatgtttggttttgttatgatgtgtccacagttgttcatcaattataaactgaagtctgttgctcatttaccttggaggcaaatgacctacaaatttcttaataccatcattgatgatttgtttgcatttgtgataaaaatgccaatgcttcatcgcctgtctgtgttccgtgatgatcttatatttttgatatacctatatcagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="88320" stop="90282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88620" g_stop="88825" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88826" i_stop="89117" i_length="292">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89118" g_stop="89285" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="374" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89286" i_stop="89949" i_length="664">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89950" g_stop="89982" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="407" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E303209" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88620" e_stop="88825"/>
          <exon e_start="89118" e_stop="89285"/>
          <exon e_start="89950" e_stop="89982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATACCCATGTTGAGGTTCCGAGATCGGGAATCATATGCTGGAAATAAGACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCACAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGTTTATATGTTTGGTAAGTTTCTGTCTGTCTTTTCTTATAATTGCTCTCCATTTTTCTGGACTCTCTATCTTCTGGTATCTAGGATCTAGTAACGTAGTTTTGAGCCTCGCGATGCTCTAACAGTTGATGATCTTGCAGCTGATATTACAATTTCATTGAATAGATACGTTGAGATGTAGTGCACAGTTTGCACTTTCGATAAGCTTGTATCTTAAAACCATTTTAAGCAGGGACTTCTAATACCATATTCTCCTGTCACTTTGCTTTTTCTTAATCTAATTATTTTCAATTACTACTGCTGCAGGTTTTGTTATGATGTGTCCACAGTTGTTCATCAATTATAAACTGAAGTCTGTTGCTCATTTACCTTGGAGGCAAATGACCTACAAATTTCTTAATACCATCATTGATGATTTGTTTGCATTTGTGATAAAAATGCCAATGCTTCATCGCCTGTCTGTGTTCCGTGATGGTAAGTTTTTGAAGTAAATTCCTTTGTAGTCCATTGATTGTTTTTATTGGGTTAAGCAGCGGCGTCGTTCTCTTCTGTGACCAAGCTAGTATTTCCTGTTCAATGCTGTACATGAATTCATATTTGTATCATAAACTCAAAGCCTGAGAACGTTGTACACTCTCTTTAGATAGATTCATTGACCATCTCAAGATCTTGAAAATGTCTTTGTTAACCAAGTAACCAGCTAGATAAGAACATCCATGGGTAATGATCCATGCTAGTATTTTTTTAAGATGTCAAGTATGTGTTTTCAATGTTAGAGAATTCAATATTTGTTACTATTCACATCTTTGCAGATGCTCGAGCTCTCTAACCATTATAAAAGATGAACTTGGTTCTTTAATTGCTACAGCTCATATGCTGGATTTACGTTAAAGTTTGCCATTTATAGGTACTGATAATTATTGTGTTAAAGAAAGGAGTGGTAAATAAACAGTCTCTGGATGCTACTGTTCCTTTTAAGCTTTTACATCAGTTTAGATGATGTTGAGCCAGTAATTTTTGTGGCCGTCTTGTTTTAAAAGTCTATCATTACAAATGTTCTATGTGTTTCTTTTGCTCTATTCTGTGCATTAGCTTTCACTCGATTGGATTACTGATATCATCTGCCTTTGCCATGCAGATCTTATATTTTTGATATACCTATATCAGAGAT</genome_strand>
        <mrna_strand>TAGAATACCCATGTTGAGGTTCCGAGATCGGGAATCATATGCTGGAAATAAGACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCACAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGTTTATATGTTTG....................................................................................................................................................................................................................................................................................................GTTTTGTTATGATGTGTCCACAGTTGTTCATCAATTATAAACTGAAGTCTGTTGCTCATTTACCTTGGAGGCAAATGACCTACAAATTTCTTAATACCATCATTGATGATTTGTTTGCATTTGTGATAAAAATGCCAATGCTTCATCGCCTGTCTGTGTTCCGTGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTATATTTTTGATATACCTATATCAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351242" ref_strand="+" ref_description="SGN-E351242 [cTOS-6-D3]">
      <seq>tcatttaccttggaggcaaatgacctacaaatttcttaataccatcattgatgatttgtttgcatttgtgataaaaatgccaatgcttcatcgcctgtctgtgttccgtgatgatcttatatttttgatatacctatatcagagatgggtttatccagtagataagaaacgggtgaatgagtttggttttgctgcggaagatgtggatcaagctgccagtagttcagatactcccgcacttaaagaagacgagaagaaaactaactaatctaaatctctcacttaggcttcagtacaacatacttcttgttttggatgaactcaacacctgcaacgatgatgagttgcttcaggacgtttagtaatttctcaggatctttggttacaatattcagattcgagtaacttaatcgagaattggaaatgacaacagcggcctgagaggggaactctggtactttcagatgtcaatcacctcttcgtcacgtttcttaagttcccatttctcaagtctttttgtagctataaataccagattctatctacataggttttctggatttcttttctattttgttcctgttagaatcaaatgtttgtgtgaaagtgaaactacnatgactgctgttagaaatgcaccaatatggtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="88873" stop="90789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89173" g_stop="89285" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89286" i_stop="89949" i_length="664">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89950" g_stop="90489" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="653" r_length="540" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E351242" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89173" e_stop="89285"/>
          <exon e_start="89950" e_stop="90489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTACCTTGGAGGCAAATGACCTACAAATTTCTTAATACCATCATTGATGATTTGTTTGCATTTGTGATAAAAATGCCAATGCTTCATCGCCTGTCTGTGTTCCGTGATGGTAAGTTTTTGAAGTAAATTCCTTTGTAGTCCATTGATTGTTTTTATTGGGTTAAGCAGCGGCGTCGTTCTCTTCTGTGACCAAGCTAGTATTTCCTGTTCAATGCTGTACATGAATTCATATTTGTATCATAAACTCAAAGCCTGAGAACGTTGTACACTCTCTTTAGATAGATTCATTGACCATCTCAAGATCTTGAAAATGTCTTTGTTAACCAAGTAACCAGCTAGATAAGAACATCCATGGGTAATGATCCATGCTAGTATTTTTTTAAGATGTCAAGTATGTGTTTTCAATGTTAGAGAATTCAATATTTGTTACTATTCACATCTTTGCAGATGCTCGAGCTCTCTAACCATTATAAAAGATGAACTTGGTTCTTTAATTGCTACAGCTCATATGCTGGATTTACGTTAAAGTTTGCCATTTATAGGTACTGATAATTATTGTGTTAAAGAAAGGAGTGGTAAATAAACAGTCTCTGGATGCTACTGTTCCTTTTAAGCTTTTACATCAGTTTAGATGATGTTGAGCCAGTAATTTTTGTGGCCGTCTTGTTTTAAAAGTCTATCATTACAAATGTTCTATGTGTTTCTTTTGCTCTATTCTGTGCATTAGCTTTCACTCGATTGGATTACTGATATCATCTGCCTTTGCCATGCAGATCTTATATTTTTGATATACCTATATCAGAGATGGGTTTATCCAGTAGATAAGAAACGGGTGAATGAGTTTGGTTTTGCTGCGGAAGATGTGGATCAAGCTGCCAGTAGTTCAGATACTCCCGCACTTAAAGAAGACGAGAAGAAAACTAACTAATCTAAATCTCTCACTTAGGCTTCAGTACAACATACTTCTTGTTTTGGATGAACTCAACACCTGCAACGATGATGAGTTGCTTCAGGACGTTTAGTAATTTCTCAGGATCTTTGGTTACAATATTCAGATTCGAGTAACTTAATCGAGAATTGGAAATGACAACAGCGGCCTGAGAGGGGAACTCTGGTACTTTCAGATGTCAATCACCTCTTCGTCACGTTTCTTAAGTTCCCATTTCTCAAGTCTTTTTGTAGCTATAAATACCAGATTCTATCTACATAGGTTTTCTGGATTTCTTTTCTATTTTGTTCCTGTTAGAATCAAATGTTTGTGTGATAGTGAAACTACAATGACTGCTGTTAGAAATGCACCAATATGGTTTCTT</genome_strand>
        <mrna_strand>TCATTTACCTTGGAGGCAAATGACCTACAAATTTCTTAATACCATCATTGATGATTTGTTTGCATTTGTGATAAAAATGCCAATGCTTCATCGCCTGTCTGTGTTCCGTGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTATATTTTTGATATACCTATATCAGAGATGGGTTTATCCAGTAGATAAGAAACGGGTGAATGAGTTTGGTTTTGCTGCGGAAGATGTGGATCAAGCTGCCAGTAGTTCAGATACTCCCGCACTTAAAGAAGACGAGAAGAAAACTAACTAATCTAAATCTCTCACTTAGGCTTCAGTACAACATACTTCTTGTTTTGGATGAACTCAACACCTGCAACGATGATGAGTTGCTTCAGGACGTTTAGTAATTTCTCAGGATCTTTGGTTACAATATTCAGATTCGAGTAACTTAATCGAGAATTGGAAATGACAACAGCGGCCTGAGAGGGGAACTCTGGTACTTTCAGATGTCAATCACCTCTTCGTCACGTTTCTTAAGTTCCCATTTCTCAAGTCTTTTTGTAGCTATAAATACCAGATTCTATCTACATAGGTTTTCTGGATTTCTTTTCTATTTTGTTCCTGTTAGAATCAAATGTTTGTGTGAAAGTGAAACTACNATGACTGCTGTTAGAAATGCACCAATATGGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213463" ref_strand="+" ref_description="SGN-E213463 [cLEC-71-N7]">
      <seq>cacccccacccccaccccctctgtatttgtggtatatagtttacatacatacataaacggtgacattgtctacttgtttcttgagaaagttctttttttttccatcctctcttgttgtatctatggctgcactgaatcctaatgcagaagagtttaaaccaactaataatgaaaaagaagtagtcccttttaatccacaaggcaatgaacttgttgtatatcagccaccattactgccatttcatgtttcacagcctcaatgtcatcacttgggttatttctactactatcaacaaaatgttcccttttattggattcacgatgatctttatcatcaacttgaaaatacacctcaaactcagtcatttcttgcaaaaggtgagatctttagtgatggggtgaaggagaagtgggtgtgggttgagaaaactcatcaagatcagtcttttgttgataaagatgaaatctttagtgatgggatgaacaaaaattggaaaaacaagaaaccctttttgccacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="93320" stop="94440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93620" g_stop="94140" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-E213463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93620" e_stop="94140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCCCACCCCCACCCCCTCTGTATTTGTGGTATATAGTTTACATACATACATAAACGGTGACATTGTCTACTTGTTTCTTGAGAAAGTTCTTTTTTTTTCCATCCTCTCTTGTTGTATCTATGGCTGCACTGAATCCTAATGCAGAAGAGTTTAAACCAACTAATAATGAAAAAGAAGTAGTCCCTTTTAATCCACAAGGCAATGAACTTGTTGTATATCAGCCACCATTACTGCCATTTCATGTTTCACAGCCTCAATGTCATCACTTGGGTTATTTCTACTACTATCAACAAAATGTTCCCTTTTATTGGATTCACGATGATCTTTATCATCAACTTGAAAATACACCTCAAACTCAGTCATTTCTTGCAAAAGGTGAGATCTTTAGTGATGGGGTGAAGGAGAAGTGGGTGTGGGTTGAGAAAACTCATCAAGATCAGTCTTTTGTTGATAAAGATGAAATCTTTAGTGATGGGATGAACAAAAATTGGAAAAACAAGAAACCCTTTTTGCCACCT</genome_strand>
        <mrna_strand>CACCCCCACCCCCACCCCCTCTGTATTTGTGGTATATAGTTTACATACATACATAAACGGTGACATTGTCTACTTGTTTCTTGAGAAAGTTCTTTTTTTTTCCATCCTCTCTTGTTGTATCTATGGCTGCACTGAATCCTAATGCAGAAGAGTTTAAACCAACTAATAATGAAAAAGAAGTAGTCCCTTTTAATCCACAAGGCAATGAACTTGTTGTATATCAGCCACCATTACTGCCATTTCATGTTTCACAGCCTCAATGTCATCACTTGGGTTATTTCTACTACTATCAACAAAATGTTCCCTTTTATTGGATTCACGATGATCTTTATCATCAACTTGAAAATACACCTCAAACTCAGTCATTTCTTGCAAAAGGTGAGATCTTTAGTGATGGGGTGAAGGAGAAGTGGGTGTGGGTTGAGAAAACTCATCAAGATCAGTCTTTTGTTGATAAAGATGAAATCTTTAGTGATGGGATGAACAAAAATTGGAAAAACAAGAAACCCTTTTTGCCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>184</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3554" PGL_stop="78"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3554" e_stop="3024"/>
            <exon e_start="2080" e_stop="1970"/>
            <exon e_start="1757" e_stop="1644"/>
            <exon e_start="834" e_stop="544"/>
            <exon e_start="441" e_stop="331"/>
            <exon e_start="112" e_stop="78"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3554" e_stop="3024" e_length="531"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3023" i_stop="2081" i_length="943"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2080" e_stop="1970" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.771">
            <gDNA_intron_boundary i_start="1969" i_stop="1758" i_length="212"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1757" e_stop="1644" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.939">
            <gDNA_intron_boundary i_start="1643" i_stop="835" i_length="809"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="834" e_stop="544" e_length="291"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.997">
            <gDNA_intron_boundary i_start="543" i_stop="442" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="441" e_stop="331" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.983">
            <gDNA_intron_boundary i_start="330" i_stop="113" i_length="218"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112" e_stop="78" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3554" stop="3024"/>
              <exon start="2080" stop="1970"/>
              <exon start="1757" stop="1717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3551" stop="3024"/>
              <exon start="2080" stop="1970"/>
              <exon start="1757" stop="1644"/>
              <exon start="834" stop="764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3550" stop="3024"/>
              <exon start="2080" stop="2006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3545" stop="3024"/>
              <exon start="2080" stop="1973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3545" stop="3060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3543" stop="3026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3521" stop="3024"/>
              <exon start="2080" stop="1970"/>
              <exon start="1757" stop="1644"/>
              <exon start="834" stop="806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3491" stop="3080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3328" stop="3024"/>
              <exon start="2080" stop="1970"/>
              <exon start="1757" stop="1644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3315" stop="3024"/>
              <exon start="2080" stop="1970"/>
              <exon start="1757" stop="1645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3304" stop="3024"/>
              <exon start="2080" stop="1970"/>
              <exon start="1757" stop="1657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3294" stop="3024"/>
              <exon start="2080" stop="1970"/>
              <exon start="1757" stop="1644"/>
              <exon start="834" stop="767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3275" stop="3024"/>
              <exon start="2080" stop="1970"/>
              <exon start="1757" stop="1644"/>
              <exon start="834" stop="552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3271" stop="3024"/>
              <exon start="2080" stop="1970"/>
              <exon start="1757" stop="1644"/>
              <exon start="834" stop="762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3181" stop="3024"/>
              <exon start="2080" stop="1970"/>
              <exon start="1757" stop="1644"/>
              <exon start="834" stop="670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2062" stop="1970"/>
              <exon start="1757" stop="1644"/>
              <exon start="834" stop="544"/>
              <exon start="441" stop="331"/>
              <exon start="112" stop="78"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2061" stop="1970"/>
              <exon start="1757" stop="1644"/>
              <exon start="834" stop="544"/>
              <exon start="441" stop="428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208230" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCTTCTCAAAAAAATGGAGTCGGAGAAACCCCAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAGAAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAATCTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGTCCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGGTTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTTTGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAG : GTGGAAGTTCAAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAACAAGCTTTAGAG : AAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATCAAGGAATCTTCCGCATTCAATGTCAAATCGAAAAT : ATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAATTGATTGGAGGGTCTAGTGAAGGAGGTTCAGCTGTTTTCCGATTAGATTATAAAGGTCAACCTGCATGTCTGGCGCAGTCACCTCAACTTCACAAACAAATGGCAATATGTGGTGATTTTGGCCGTGTATTTGAAGTAGGCCCCGTCTTTAGGGCAGAAGATTCTTTTACACATAGACATCTGTGCGAGTTTACAGGTCTTGATGTTGAAATGGAGATCAAGGAACATTATTCAGAG : GTCATGGATATTGTTGACCGCTTATTTGTGGCCATGTTTGATAGCTTGAATGAGAAATGCAAAAAGGAACTTGAAGCCGTTGGAAAGCAATACCCTTTTGAACCTCTGAAG : TATTTGCGAAAGACCTTACGACTTACATTTGCTGA</gDNA_template>
            <first_frame> S  L  L  K  K  M  E  S  E  K  P  Q  N  P  S  P  M  E  P  Q  E  E  G  S  N  K  I  S  K  K  E  A  A  K  L  E  R  Q  R  R  R  Q  E  A  A  A  A  A  A  A  T  A  V  S  T  V  S  I  E  E  S  D  P  L  S  G  N  Y  G  D  V  E  L  N  D  L  Q  S  K  A  V  T  G  R  K  W  T  E  V  G  S  I  A  P  E  M  K  D  R  V  V  L  V  R  G  R  V  Q  T  I  R  P  V  G  K  K  I  A  F  V  V  V  R  E  R  G  F  T  V  Q  C  V  L  T  V  K  P  E  L  V  S  S  Q  M  V  K  Y  A  T  S  L  S  K  E  S  I  I  D  V  E  G  V  V  T  I  P  E  K  P  I  T  G  A  T  Q  Q  Q  :  V  E  V  Q  I  S  K  L  Y  C  V  N  R  A  V  P  T  L  P  I  N  I  E  D  A  A  R  S  E  V  E  I  E  Q  A  L  E  :  K  G  E  Q  L  V  R  V  N  Q  D  T  R  L  N  F  R  I  L  D  M  R  T  P  A  N  Q  G  I  F  R  I  Q  C  Q  I  E  N  :  I  F  R  Q  F  L  L  S  E  G  F  V  G  I  H  T  P  K  L  I  G  G  S  S  E  G  G  S  A  V  F  R  L  D  Y  K  G  Q  P  A  C  L  A  Q  S  P  Q  L  H  K  Q  M  A  I  C  G  D  F  G  R  V  F  E  V  G  P  V  F  R  A  E  D  S  F  T  H  R  H  L  C  E  F  T  G  L  D  V  E  M  E  I  K  E  H  Y  S  E  :  V  M  D  I  V  D  R  L  F  V  A  M  F  D  S  L  N  E  K  C  K  K  E  L  E  A  V  G  K  Q  Y  P  F  E  P  L  K  :  Y  L  R  K  T  L  R  L  T  F  A   </first_frame>
            <second_frame>  V  F  S  K  K  W  S  R  R  N  P  K  I  H  L  Q  W  N  H  K  K  K  A  A  T  K  S  P  K  K  K  P  P  S  W  S  V  S  A  A  V  K  R  Q  P  P  P  P  P  P  L  L  S  P  L  S  P  L  K  N  L  I  H  F  P  E  T  T  V  T  *  S  *  T  I  C  N  L  R  P  *  R  V  E  S  G  L  K  L  G  P  S  R  Q  K  *  R  T  G  W  S  W  F  G  G  G  Y  R  R  F  V  L  L  G  K  R  *  L  L  W  L  *  G  N  E  D  L  R  C  S  V  Y  *  L  *  S  L  N  W  L  V  H  K  W  *  N  M  L  L  V  *  A  K  S  P  L  L  M  L  K  V  L  L  Q  Y  Q  R  S  Q  L  L  V  P  L  N  N  R :   W  K  F  K  *  A  N  F  I  V  S  T  G  L  C  P  L  Y  R  L  I  L  R  M  L  L  E  A  R  W  R  *  N  K  L  *  R :   K  E  S  S  L  F  V  *  I  R  I  L  A  *  T  S  E  Y  *  T  C  A  H  L  Q  I  K  E  S  S  A  F  N  V  K  S  K  I :   Y  S  G  S  F  C  S  L  K  D  L  *  E  S  I  L  Q  N  *  L  E  G  L  V  K  E  V  Q  L  F  S  D  *  I  I  K  V  N  L  H  V  W  R  S  H  L  N  F  T  N  K  W  Q  Y  V  V  I  L  A  V  Y  L  K  *  A  P  S  L  G  Q  K  I  L  L  H  I  D  I  C  A  S  L  Q  V  L  M  L  K  W  R  S  R  N  I  I  Q  R :   S  W  I  L  L  T  A  Y  L  W  P  C  L  I  A  *  M  R  N  A  K  R  N  L  K  P  L  E  S  N  T  L  L  N  L  *  S :   I  C  E  R  P  Y  D  L  H  L  L  </second_frame>
            <third_frame>   S  S  Q  K  N  G  V  G  E  T  P  K  S  I  S  N  G  T  T  R  R  R  Q  Q  Q  N  L  Q  K  R  S  R  Q  A  G  A  S  A  P  P  S  R  G  S  R  R  R  R  R  H  C  C  L  H  C  L  H  *  R  I  *  S  T  F  R  K  L  R  *  R  R  A  E  R  S  A  I  *  G  R  D  G  S  K  V  D  *  S  W  V  H  R  A  R  N  E  G  P  G  G  L  G  S  G  E  G  T  D  D  S  S  C  W  E  K  D  S  F  C  G  C  E  G  T  R  I  Y  G  A  V  C  I  D  C  E  A  *  I  G  *  F  T  N  G  E  I  C  Y  *  F  E  Q  R  V  H  Y  *  C  *  R  C  C  Y  N  T  R  E  A  N  Y  W  C  H  S  T  T   : G  G  S  S  N  K  Q  T  L  L  C  Q  Q  G  C  A  H  S  T  D  *  Y  *  G  C  C  *  K  R  G  G  D  R  T  S  F  R   : E  R  R  A  A  C  S  C  K  S  G  Y  S  L  K  L  Q  N  T  R  H  A  H  T  C  K  S  R  N  L  P  H  S  M  S  N  R  K   : Y  I  Q  A  V  F  A  L  *  R  I  C  R  N  P  Y  S  K  I  D  W  R  V  *  *  R  R  F  S  C  F  P  I  R  L  *  R  S  T  C  M  S  G  A  V  T  S  T  S  Q  T  N  G  N  M  W  *  F  W  P  C  I  *  S  R  P  R  L  *  G  R  R  F  F  Y  T  *  T  S  V  R  V  Y  R  S  *  C  *  N  G  D  Q  G  T  L  F  R   : G  H  G  Y  C  *  P  L  I  C  G  H  V  *  *  L  E  *  E  M  Q  K  G  T  *  S  R  W  K  A  I  P  F  *  T  S  E   : V  F  A  K  D  L  T  T  Y  I  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3554" stop="3024"/>
                    <exon start="2080" stop="1970"/>
                    <exon start="1757" stop="1644"/>
                    <exon start="834" stop="544"/>
                    <exon start="441" stop="331"/>
                    <exon start="112" stop="80"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1191</number_coding_nucleotides>
                  <number_encoded_amino_acids>397</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLKKMESEKPQNPSPMEPQEEGSNKISKKEAAKLERQRRRQEAAAAAAATAVSTVSIEESDPLSGNYGDVELNDLQSKAVTGRKWTEVGSIAPEMKDRVVLVRGRVQTIRPVGKKIAFVVVRERGFTVQCVLTVKPELVSSQMVKYATSLSKESIIDVEGVVTIPEKPITGATQQQVEVQISKLYCVNRAVPTLPINIEDAARSEVEIEQALEKGEQLVRVNQDTRLNFRILDMRTPANQGIFRIQCQIENIFRQFLLSEGFVGIHTPKLIGGSSEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDFGRVFEVGPVFRAEDSFTHRHLCEFTGLDVEMEIKEHYSEVMDIVDRLFVAMFDSLNEKCKKELEAVGKQYPFEPLKYLRKTLRLTFA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11011" PGL_stop="4216"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11011" e_stop="10727"/>
            <exon e_start="8659" e_stop="8469"/>
            <exon e_start="7769" e_stop="7563"/>
            <exon e_start="7474" e_stop="7357"/>
            <exon e_start="6795" e_stop="6719"/>
            <exon e_start="6237" e_stop="6058"/>
            <exon e_start="5916" e_stop="5872"/>
            <exon e_start="5647" e_stop="5543"/>
            <exon e_start="4694" e_stop="4581"/>
            <exon e_start="4503" e_stop="4216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="0.992"/>
          <exon-intron don_prob="0.863" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.807" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="11011" e_stop="10727" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8659" e_stop="8469" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.863" acc_prob="0.989">
            <gDNA_intron_boundary i_start="8468" i_stop="7770" i_length="699"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7769" e_stop="7563" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7562" i_stop="7475" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7474" e_stop="7357" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.953">
            <gDNA_intron_boundary i_start="7356" i_stop="6796" i_length="561"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6795" e_stop="6719" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.945" acc_prob="0.943">
            <gDNA_intron_boundary i_start="6718" i_stop="6238" i_length="481"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6237" e_stop="6058" e_length="180"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.871">
            <gDNA_intron_boundary i_start="6057" i_stop="5917" i_length="141"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5916" e_stop="5872" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.807">
            <gDNA_intron_boundary i_start="5871" i_stop="5648" i_length="224"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="5647" e_stop="5543" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.981">
            <gDNA_intron_boundary i_start="5542" i_stop="4695" i_length="848"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4694" e_stop="4581" e_length="114"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4580" i_stop="4504" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="4503" e_stop="4216" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11011" stop="10727"/>
              <exon start="8659" stop="8526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10981" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7563"/>
              <exon start="7474" stop="7357"/>
              <exon start="6795" stop="6719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10972" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10972" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10970" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7563"/>
              <exon start="7474" stop="7401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10960" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7563"/>
              <exon start="7474" stop="7357"/>
              <exon start="6795" stop="6743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10951" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10947" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10946" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7563"/>
              <exon start="7474" stop="7401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10942" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7563"/>
              <exon start="7474" stop="7357"/>
              <exon start="6795" stop="6733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10942" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7563"/>
              <exon start="7474" stop="7446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10942" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10938" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7563"/>
              <exon start="7474" stop="7361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10938" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10930" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7563"/>
              <exon start="7474" stop="7357"/>
              <exon start="6795" stop="6746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10930" stop="10727"/>
              <exon start="8659" stop="8469"/>
              <exon start="7769" stop="7563"/>
              <exon start="7474" stop="7357"/>
              <exon start="6795" stop="6765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8594" stop="8469"/>
              <exon start="7769" stop="7563"/>
              <exon start="7474" stop="7357"/>
              <exon start="6795" stop="6719"/>
              <exon start="6237" stop="6139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8594" stop="8469"/>
              <exon start="7769" stop="7563"/>
              <exon start="7474" stop="7357"/>
              <exon start="6795" stop="6719"/>
              <exon start="6237" stop="6218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7745" stop="7563"/>
              <exon start="7474" stop="7357"/>
              <exon start="6795" stop="6719"/>
              <exon start="6237" stop="6058"/>
              <exon start="5916" stop="5872"/>
              <exon start="5647" stop="5543"/>
              <exon start="4694" stop="4628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7438" stop="7357"/>
              <exon start="6795" stop="6719"/>
              <exon start="6237" stop="6058"/>
              <exon start="5916" stop="5872"/>
              <exon start="5647" stop="5543"/>
              <exon start="4694" stop="4611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7438" stop="7357"/>
              <exon start="6795" stop="6719"/>
              <exon start="6237" stop="6058"/>
              <exon start="5916" stop="5872"/>
              <exon start="5647" stop="5557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7415" stop="7357"/>
              <exon start="6795" stop="6719"/>
              <exon start="6237" stop="6058"/>
              <exon start="5916" stop="5872"/>
              <exon start="5647" stop="5543"/>
              <exon start="4694" stop="4581"/>
              <exon start="4503" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5894" stop="5872"/>
              <exon start="5647" stop="5543"/>
              <exon start="4694" stop="4581"/>
              <exon start="4503" stop="4222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5894" stop="5872"/>
              <exon start="5647" stop="5543"/>
              <exon start="4694" stop="4581"/>
              <exon start="4503" stop="4225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTATTGACTCTTGATAGAGTTTCAATAACCGGCGCCACTCACTAGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG : AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAG : AACTTTGATGAAGTTTTGGTACCTGCTGATCACATTAGCAGGAGTTACAATGACACATATTATGTGGATTCTCAAACTGTCCTAAGGTGCCACACAAGTGCACATCAAGCTGAGCTACTGAGGAATGGACACACCCATTTTCTTGTTACTGGCGATGTGTACCGTAGAGATTCCATTGACTCAACTCACTATCCTGTATTCCATCAG : ATGGAGGGTGTACGGGTCTTTGCTCCAAATGATTGGGAGGGTTCAGGTACTGATGCAACGTCACATGCTGCGGAAGATCTTAAGAAATGTCTTGAGGGTTTGGCACGACATCTATTTG : GTGGGGTGGAAATGCGCTGGGTTGACACTTACTTCCCCTTTACTAATCCATCATTTGAACTGGAGATATATTTTCAG : GATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA : TTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAG : TATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAG : GTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCACTTACAGACGAGGAAATAAACGATCTGCAG : TGGAAAGTGAGAGAACAGGTGGAGAACAAGTTAAAGGTTGTCCTAAGATGAGCTATTTTCATTTGTTTGTTTTTTTCTGATTTTGTAGTTTACAACATGTAGTTTTTACCTGAATTTTGTTTTACATTTATATGTCACTTTTTTTTGCACCATCTTGATTGTAATAATAGAATATGCTTATTTGCTGTCATTTGGAGTTTTGAGGCCAATATGTTGAGGCAATAGATGAAGGTTGATTGTATTGGAATAATTAGTATCAAAAGTGAAACCATTCTATTTTGGTTCTTC</gDNA_template>
            <first_frame> S  I  D  S  *  *  S  F  N  N  R  R  H  S  L  E  R  L  S  K  F  A  M  A  L  S  L  A  K  S  T  F  F  S  N  P  T  S  Y  F  P  K  N  G  I  R  S  F  G  F  L  V  P  F  S  S  S  F  L  L  L  L  R  F  L  Q  *  M  E  S  M  V  T  R  R  G  N  H  Q  *  *  P  L  L  S  I  L  V  E  S  R  F  Q  K  M  :  K  *  *  G  M  T  P  Q  T  I  F  Q  I  Q  Y  L  Q  S  L  E  C  S  F  I  G  G  T  N  I  H  L  V  S  L  R  M  R  S  M  I  I  L  T  Q  T  I  Q  I  S  L  T  S  L  M  I  C  A  Q  *  F  L  L  D  R :   T  L  M  K  F  W  Y  L  L  I  T  L  A  G  V  T  M  T  H  I  M  W  I  L  K  L  S  *  G  A  T  Q  V  H  I  K  L  S  Y  *  G  M  D  T  P  I  F  L  L  L  A  M  C  T  V  E  I  P  L  T  Q  L  T  I  L  Y  S  I  R :   W  R  V  Y  G  S  L  L  Q  M  I  G  R  V  Q  V  L  M  Q  R  H  M  L  R  K  I  L  R  N  V  L  R  V  W  H  D  I  Y  L  :  V  G  W  K  C  A  G  L  T  L  T  S  P  L  L  I  H  H  L  N  W  R  Y  I  F  R :   I  N  G  W  K  F  W  V  V  E  *  Q  N  K  K  Y  *  K  E  A  V  K  Q  T  M  L  L  G  H  L  G  L  D  W  S  A  W  L  W  F  Y  L  I  F  Q  I  F  D  C  S  G  Q  L  M  S  G  S  L  L  N :   F  L  A  A  G  S  G  *  S  L  S  H  F  P  S :   I  H  L  V  I  K  I  *  V  S  G  S  V  I  H  L  P  R  T  I  S  V  K  L  L  E  E  L  L  E  T  L  P  R  R :   *  N  *  *  T  T  S  P  I  R  K  E  *  Q  V  I  A  I  G  *  L  I  G  P  W  N  V  H  L  Q  T  R  K  *  T  I  C  S :   G  K  *  E  N  R  W  R  T  S  *  R  L  S  *  D  E  L  F  S  F  V  C  F  F  L  I  L  *  F  T  T  C  S  F  Y  L  N  F  V  L  H  L  Y  V  T  F  F  C  T  I  L  I  V  I  I  E  Y  A  Y  L  L  S  F  G  V  L  R  P  I  C  *  G  N  R  *  R  L  I  V  L  E  *  L  V  S  K  V  K  P  F  Y  F  G  S   </first_frame>
            <second_frame>  L  L  T  L  D  R  V  S  I  T  G  A  T  H  *  R  G  *  A  N  L  Q  W  L  F  H  *  L  N  P  L  S  S  L  I  P  L  H  I  S  P  R  M  A  F  E  A  L  D  F  L  F  L  S  P  P  L  F  Y  F  F  S  V  S  C  S  R  W  S  P  W  S  Q  E  E  A  I  I  S  S  S  L  C  S  R  S  W  W  S  Q  D  F  K  R  * :   N  S  K  G  *  P  H  K  Q  Y  S  R  Y  N  I  C  K  A  W  N  A  A  S  *  E  E  P  T  S  T  W  Y  P  *  E  C  D  L  *  L  F  *  H  K  L  S  R  *  V  *  Q  V  *  *  F  V  P  N  S  F  C  *  T   : E  L  *  *  S  F  G  T  C  *  S  H  *  Q  E  L  Q  *  H  I  L  C  G  F  S  N  C  P  K  V  P  H  K  C  T  S  S  *  A  T  E  E  W  T  H  P  F  S  C  Y  W  R  C  V  P  *  R  F  H  *  L  N  S  L  S  C  I  P  S   : D  G  G  C  T  G  L  C  S  K  *  L  G  G  F  R  Y  *  C  N  V  T  C  C  G  R  S  *  E  M  S  *  G  F  G  T  T  S  I  W :   W  G  G  N  A  L  G  *  H  L  L  P  L  Y  *  S  I  I  *  T  G  D  I  F  S   : G  S  M  D  G  S  F  G  L  W  S  D  R  T  R  N  I  E  K  K  R  *  N  R  Q  C  C  L  G  I  W  A  W  I  G  A  L  G  Y  G  F  I  *  Y  S  R  Y  S  T  V  L  V  N  *  *  A  V  H  F  S   : I  F  *  R  P  A  R  V  E  V  *  A  I  F  Q   : V  S  T  L  L  *  R  Y  E  F  L  D  Q  *  F  I  Y  R  E  Q  S  L  *  S  C  *  R  N  C  W  R  P  C  R  G   : G  E  T  D  R  Q  L  H  Q  *  E  R  N  D  K  S  L  L  S  D  S  L  S  V  H  G  T  F  T  Y  R  R  G  N  K  R  S  A   : V  E  S  E  R  T  G  G  E  Q  V  K  G  C  P  K  M  S  Y  F  H  L  F  V  F  F  *  F  C  S  L  Q  H  V  V  F  T  *  I  L  F  Y  I  Y  M  S  L  F  F  A  P  S  *  L  *  *  *  N  M  L  I  C  C  H  L  E  F  *  G  Q  Y  V  E  A  I  D  E  G  *  L  Y  W  N  N  *  Y  Q  K  *  N  H  S  I  L  V  L  </second_frame>
            <third_frame>   Y  *  L  L  I  E  F  Q  *  P  A  P  L  T  R  E  A  E  Q  I  C  N  G  S  F  I  S  *  I  H  F  L  L  *  S  H  F  I  F  P  Q  E  W  H  S  K  L  W  I  S  C  S  F  L  L  L  F  S  T  S  S  P  F  P  A  V  D  G  V  H  G  H  K  K  R  Q  S  S  V  V  A  S  A  L  D  L  G  G  V  K  I  S  K  D   : E  I  V  R  D  D  P  T  N  N  I  P  D  T  I  F  A  K  L  G  M  Q  L  H  R  R  N  Q  H  P  L  G  I  L  K  N  A  I  Y  D  Y  F  D  T  N  Y  P  D  K  F  D  K  F  D  D  L  C  P  I  V  S  V  R  Q  :  N  F  D  E  V  L  V  P  A  D  H  I  S  R  S  Y  N  D  T  Y  Y  V  D  S  Q  T  V  L  R  C  H  T  S  A  H  Q  A  E  L  L  R  N  G  H  T  H  F  L  V  T  G  D  V  Y  R  R  D  S  I  D  S  T  H  Y  P  V  F  H  Q  :  M  E  G  V  R  V  F  A  P  N  D  W  E  G  S  G  T  D  A  T  S  H  A  A  E  D  L  K  K  C  L  E  G  L  A  R  H  L  F   : G  G  V  E  M  R  W  V  D  T  Y  F  P  F  T  N  P  S  F  E  L  E  I  Y  F  Q  :  D  Q  W  M  E  V  L  G  C  G  V  T  E  Q  E  I  L  K  R  S  G  K  T  D  N  V  A  W  A  F  G  L  G  L  E  R  L  A  M  V  L  F  D  I  P  D  I  R  L  F  W  S  T  D  E  R  F  T  S  Q  :  F  S  S  G  R  L  G  L  K  F  K  P  F  S  K  :  Y  P  P  C  Y  K  D  M  S  F  W  I  S  D  S  F  T  E  N  N  L  C  E  V  V  R  G  I  A  G  D  L  A  E  E  :  V  K  L  I  D  N  F  T  N  K  K  G  M  T  S  H  C  Y  R  I  A  Y  R  S  M  E  R  S  L  T  D  E  E  I  N  D  L  Q  :  W  K  V  R  E  Q  V  E  N  K  L  K  V  V  L  R  *  A  I  F  I  C  L  F  F  S  D  F  V  V  Y  N  M  *  F  L  P  E  F  C  F  T  F  I  C  H  F  F  L  H  H  L  D  C  N  N  R  I  C  L  F  A  V  I  W  S  F  E  A  N  M  L  R  Q  *  M  K  V  D  C  I  G  I  I  S  I  K  S  E  T  I  L  F  W  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10907" stop="10727"/>
                    <exon start="8659" stop="8469"/>
                    <exon start="7769" stop="7563"/>
                    <exon start="7474" stop="7357"/>
                    <exon start="6795" stop="6719"/>
                    <exon start="6237" stop="6058"/>
                    <exon start="5916" stop="5872"/>
                    <exon start="5647" stop="5543"/>
                    <exon start="4694" stop="4581"/>
                    <exon start="4503" stop="4453"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHFIFPQEWHSKLWISCSFLLLFSTSSPFPAVDGVHGHKKRQSSVVASALDLGGVKISKDEIVRDDPTNNIPDTIFAKLGMQLHRRNQHPLGILKNAIYDYFDTNYPDKFDKFDDLCPIVSVRQNFDEVLVPADHISRSYNDTYYVDSQTVLRCHTSAHQAELLRNGHTHFLVTGDVYRRDSIDSTHYPVFHQMEGVRVFAPNDWEGSGTDATSHAAEDLKKCLEGLARHLFGGVEMRWVDTYFPFTNPSFELEIYFQDQWMEVLGCGVTEQEILKRSGKTDNVAWAFGLGLERLAMVLFDIPDIRLFWSTDERFTSQFSSGRLGLKFKPFSKYPPCYKDMSFWISDSFTENNLCEVVRGIAGDLAEEVKLIDNFTNKKGMTSHCYRIAYRSMERSLTDEEINDLQWKVREQVENKLKVVLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6243" e_stop="6058"/>
            <exon e_start="5916" e_stop="5872"/>
            <exon e_start="5647" e_stop="5543"/>
            <exon e_start="4694" e_stop="4581"/>
            <exon e_start="4503" e_stop="4222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.871" e_score="0.989"/>
          <exon-intron don_prob="0.995" acc_prob="0.807" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="6243" e_stop="6058" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.871">
            <gDNA_intron_boundary i_start="6057" i_stop="5917" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5916" e_stop="5872" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.807">
            <gDNA_intron_boundary i_start="5871" i_stop="5648" i_length="224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5647" e_stop="5543" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.981">
            <gDNA_intron_boundary i_start="5542" i_stop="4695" i_length="848"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4694" e_stop="4581" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4580" i_stop="4504" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4503" e_stop="4222" e_length="282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6243" stop="6058"/>
              <exon start="5916" stop="5872"/>
              <exon start="5647" stop="5543"/>
              <exon start="4694" stop="4581"/>
              <exon start="4503" stop="4296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5894" stop="5872"/>
              <exon start="5647" stop="5543"/>
              <exon start="4694" stop="4581"/>
              <exon start="4503" stop="4222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5894" stop="5872"/>
              <exon start="5647" stop="5543"/>
              <exon start="4694" stop="4581"/>
              <exon start="4503" stop="4225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACAGGATCAATGGATGGAAGTTTTGGGTTGTGGAGTGACAGAACAAGAAATATTGAAAAGAAGCGGTAAAACAGACAATGTTGCTTGGGCATTTGGGCTTGGATTGGAGCGCTTGGCTATGGTTTTATTTGATATTCCAGATATTCGACTGTTCTGGTCAACTGATGAGCGGTTCACTTCTCAA : TTTTCTAGCGGCCGGCTCGGGTTGAAGTTTAAGCCATTTTCCAAG : TATCCACCTTGTTATAAAGATATGAGTTTCTGGATCAGTGATTCATTTACCGAGAACAATCTCTGTGAAGTTGTTAGAGGAATTGCTGGAGACCTTGCCGAGGAG : GTGAAACTGATAGACAACTTCACCAATAAGAAAGGAATGACAAGTCATTGCTATCGGATAGCTTATCGGTCCATGGAACGTTCACTTACAGACGAGGAAATAAACGATCTGCAG : TGGAAAGTGAGAGAACAGGTGGAGAACAAGTTAAAGGTTGTCCTAAGATGAGCTATTTTCATTTGTTTGTTTTTTTCTGATTTTGTAGTTTACAACATGTAGTTTTTACCTGAATTTTGTTTTACATTTATATGTCACTTTTTTTTGCACCATCTTGATTGTAATAATAGAATATGCTTATTTGCTGTCATTTGGAGTTTTGAGGCCAATATGTTGAGGCAATAGATGAAGGTTGATTGTATTGGAATAATTAGTATCAAAAGTGAAACCATTCTATTTTGG</gDNA_template>
            <first_frame> L  Q  D  Q  W  M  E  V  L  G  C  G  V  T  E  Q  E  I  L  K  R  S  G  K  T  D  N  V  A  W  A  F  G  L  G  L  E  R  L  A  M  V  L  F  D  I  P  D  I  R  L  F  W  S  T  D  E  R  F  T  S  Q  :  F  S  S  G  R  L  G  L  K  F  K  P  F  S  K  :  Y  P  P  C  Y  K  D  M  S  F  W  I  S  D  S  F  T  E  N  N  L  C  E  V  V  R  G  I  A  G  D  L  A  E  E  :  V  K  L  I  D  N  F  T  N  K  K  G  M  T  S  H  C  Y  R  I  A  Y  R  S  M  E  R  S  L  T  D  E  E  I  N  D  L  Q  :  W  K  V  R  E  Q  V  E  N  K  L  K  V  V  L  R  *  A  I  F  I  C  L  F  F  S  D  F  V  V  Y  N  M  *  F  L  P  E  F  C  F  T  F  I  C  H  F  F  L  H  H  L  D  C  N  N  R  I  C  L  F  A  V  I  W  S  F  E  A  N  M  L  R  Q  *  M  K  V  D  C  I  G  I  I  S  I  K  S  E  T  I  L  F  W </first_frame>
            <second_frame>  Y  R  I  N  G  W  K  F  W  V  V  E  *  Q  N  K  K  Y  *  K  E  A  V  K  Q  T  M  L  L  G  H  L  G  L  D  W  S  A  W  L  W  F  Y  L  I  F  Q  I  F  D  C  S  G  Q  L  M  S  G  S  L  L  N :   F  L  A  A  G  S  G  *  S  L  S  H  F  P  S :   I  H  L  V  I  K  I  *  V  S  G  S  V  I  H  L  P  R  T  I  S  V  K  L  L  E  E  L  L  E  T  L  P  R  R :   *  N  *  *  T  T  S  P  I  R  K  E  *  Q  V  I  A  I  G  *  L  I  G  P  W  N  V  H  L  Q  T  R  K  *  T  I  C  S :   G  K  *  E  N  R  W  R  T  S  *  R  L  S  *  D  E  L  F  S  F  V  C  F  F  L  I  L  *  F  T  T  C  S  F  Y  L  N  F  V  L  H  L  Y  V  T  F  F  C  T  I  L  I  V  I  I  E  Y  A  Y  L  L  S  F  G  V  L  R  P  I  C  *  G  N  R  *  R  L  I  V  L  E  *  L  V  S  K  V  K  P  F  Y  F   </second_frame>
            <third_frame>   T  G  S  M  D  G  S  F  G  L  W  S  D  R  T  R  N  I  E  K  K  R  *  N  R  Q  C  C  L  G  I  W  A  W  I  G  A  L  G  Y  G  F  I  *  Y  S  R  Y  S  T  V  L  V  N  *  *  A  V  H  F  S   : I  F  *  R  P  A  R  V  E  V  *  A  I  F  Q   : V  S  T  L  L  *  R  Y  E  F  L  D  Q  *  F  I  Y  R  E  Q  S  L  *  S  C  *  R  N  C  W  R  P  C  R  G   : G  E  T  D  R  Q  L  H  Q  *  E  R  N  D  K  S  L  L  S  D  S  L  S  V  H  G  T  F  T  Y  R  R  G  N  K  R  S  A   : V  E  S  E  R  T  G  G  E  Q  V  K  G  C  P  K  M  S  Y  F  H  L  F  V  F  F  *  F  C  S  L  Q  H  V  V  F  T  *  I  L  F  Y  I  Y  M  S  L  F  F  A  P  S  *  L  *  *  *  N  M  L  I  C  C  H  L  E  F  *  G  Q  Y  V  E  A  I  D  E  G  *  L  Y  W  N  N  *  Y  Q  K  *  N  H  S  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6243" stop="6058"/>
                    <exon start="5916" stop="5872"/>
                    <exon start="5647" stop="5543"/>
                    <exon start="4694" stop="4581"/>
                    <exon start="4503" stop="4453"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQDQWMEVLGCGVTEQEILKRSGKTDNVAWAFGLGLERLAMVLFDIPDIRLFWSTDERFTSQFSSGRLGLKFKPFSKYPPCYKDMSFWISDSFTENNLCEVVRGIAGDLAEEVKLIDNFTNKKGMTSHCYRIAYRSMERSLTDEEINDLQWKVREQVENKLKVVLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="11011" e_stop="10727"/>
            <exon e_start="8659" e_stop="8113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="0.989"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="11011" e_stop="10727" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="10726" i_stop="8660" i_length="2067"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="8659" e_stop="8113" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11011" stop="10727"/>
              <exon start="8659" stop="8526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10789" stop="10727"/>
              <exon start="8659" stop="8113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTATTGACTCTTGATAGAGTTTCAATAACCGGCGCCACTCACTAGAGAGGCTGAGCAAATTTGCAATGGCTCTTTCATTAGCTAAATCCACTTTCTTCTCTAATCCCACTTCATATTTCCCCAAGAATGGCATTCGAAGCTTTGGATTTCTTGTTCCTTTCTCCTCCTCTTTTCTACTTCTTCTCCGTTTCCTGCAGTAGATGGAGTCCATGGTCACAAGAAGAGGCAATCATCAGTAGTAGCCTCTGCTCTCGATCTTGGTGGAGTCAAGATTTCAAAAGATG : AAATAGTAAGGGATGACCCCACAAACAATATTCCAGATACAATATTTGCAAAGCTTGGAATGCAGCTTCATAGGAGGAACCAACATCCACTTGGTATCCTTAAGAATGCGATCTATGATTATTTTGACACAAACTATCCAGATAAGTTTGACAAGTTTGATGATTTGTGCCCAATAGTTTCTGTTAGACAGGTTGGTCCAAGAAGGTTAAGGAATCTTTTTTTTTTGCACTCTTCATGATTTTGTTTTTTGTAATTATATTTGCTTTCTGTGTTCGAATTATGTTCCTTTCTCCATTGATCAAGCATATTTCTTTATTCATAATTTCATATAGCTGGCATTAACATCTGTTTAATTTGCAGTGAAGTTAGGGTCCTAACAAACCATTCATTTTGGCCTTTTCATGGGGTTCCTCATATTCTGTTGAGTAATGAATTATACTCTTCTACTCCTGAAAACCTTATTCTATTAGCTCTAAGGTCAACAATATTATTCCCCATCAATTATGAGTCAGGCATGTCAACCATTCAGCCACTAACCTATACAGA</gDNA_template>
            <first_frame> S  I  D  S  *  *  S  F  N  N  R  R  H  S  L  E  R  L  S  K  F  A  M  A  L  S  L  A  K  S  T  F  F  S  N  P  T  S  Y  F  P  K  N  G  I  R  S  F  G  F  L  V  P  F  S  S  S  F  L  L  L  L  R  F  L  Q  *  M  E  S  M  V  T  R  R  G  N  H  Q  *  *  P  L  L  S  I  L  V  E  S  R  F  Q  K  M  :  K  *  *  G  M  T  P  Q  T  I  F  Q  I  Q  Y  L  Q  S  L  E  C  S  F  I  G  G  T  N  I  H  L  V  S  L  R  M  R  S  M  I  I  L  T  Q  T  I  Q  I  S  L  T  S  L  M  I  C  A  Q  *  F  L  L  D  R  L  V  Q  E  G  *  G  I  F  F  F  C  T  L  H  D  F  V  F  C  N  Y  I  C  F  L  C  S  N  Y  V  P  F  S  I  D  Q  A  Y  F  F  I  H  N  F  I  *  L  A  L  T  S  V  *  F  A  V  K  L  G  S  *  Q  T  I  H  F  G  L  F  M  G  F  L  I  F  C  *  V  M  N  Y  T  L  L  L  L  K  T  L  F  Y  *  L  *  G  Q  Q  Y  Y  S  P  S  I  M  S  Q  A  C  Q  P  F  S  H  *  P  I  Q  </first_frame>
            <second_frame>  L  L  T  L  D  R  V  S  I  T  G  A  T  H  *  R  G  *  A  N  L  Q  W  L  F  H  *  L  N  P  L  S  S  L  I  P  L  H  I  S  P  R  M  A  F  E  A  L  D  F  L  F  L  S  P  P  L  F  Y  F  F  S  V  S  C  S  R  W  S  P  W  S  Q  E  E  A  I  I  S  S  S  L  C  S  R  S  W  W  S  Q  D  F  K  R  * :   N  S  K  G  *  P  H  K  Q  Y  S  R  Y  N  I  C  K  A  W  N  A  A  S  *  E  E  P  T  S  T  W  Y  P  *  E  C  D  L  *  L  F  *  H  K  L  S  R  *  V  *  Q  V  *  *  F  V  P  N  S  F  C  *  T  G  W  S  K  K  V  K  E  S  F  F  F  A  L  F  M  I  L  F  F  V  I  I  F  A  F  C  V  R  I  M  F  L  S  P  L  I  K  H  I  S  L  F  I  I  S  Y  S  W  H  *  H  L  F  N  L  Q  *  S  *  G  P  N  K  P  F  I  L  A  F  S  W  G  S  S  Y  S  V  E  *  *  I  I  L  F  Y  S  *  K  P  Y  S  I  S  S  K  V  N  N  I  I  P  H  Q  L  *  V  R  H  V  N  H  S  A  T  N  L  Y  R </second_frame>
            <third_frame>   Y  *  L  L  I  E  F  Q  *  P  A  P  L  T  R  E  A  E  Q  I  C  N  G  S  F  I  S  *  I  H  F  L  L  *  S  H  F  I  F  P  Q  E  W  H  S  K  L  W  I  S  C  S  F  L  L  L  F  S  T  S  S  P  F  P  A  V  D  G  V  H  G  H  K  K  R  Q  S  S  V  V  A  S  A  L  D  L  G  G  V  K  I  S  K  D   : E  I  V  R  D  D  P  T  N  N  I  P  D  T  I  F  A  K  L  G  M  Q  L  H  R  R  N  Q  H  P  L  G  I  L  K  N  A  I  Y  D  Y  F  D  T  N  Y  P  D  K  F  D  K  F  D  D  L  C  P  I  V  S  V  R  Q  V  G  P  R  R  L  R  N  L  F  F  L  H  S  S  *  F  C  F  L  *  L  Y  L  L  S  V  F  E  L  C  S  F  L  H  *  S  S  I  F  L  Y  S  *  F  H  I  A  G  I  N  I  C  L  I  C  S  E  V  R  V  L  T  N  H  S  F  W  P  F  H  G  V  P  H  I  L  L  S  N  E  L  Y  S  S  T  P  E  N  L  I  L  L  A  L  R  S  T  I  L  F  P  I  N  Y  E  S  G  M  S  T  I  Q  P  L  T  Y  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10907" stop="10727"/>
                    <exon start="8659" stop="8421"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHFIFPQEWHSKLWISCSFLLLFSTSSPFPAVDGVHGHKKRQSSVVASALDLGGVKISKDEIVRDDPTNNIPDTIFAKLGMQLHRRNQHPLGILKNAIYDYFDTNYPDKFDKFDDLCPIVSVRQVGPRRLRNLFFLHSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8336" stop="8115"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHIAGINICLICSEVRVLTNHSFWPFHGVPHILLSNELYSSTPENLILLALRSTILFPINYESGMSTIQPLTYT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12311" PGL_stop="19670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12311" e_stop="12686"/>
            <exon e_start="13831" e_stop="14042"/>
            <exon e_start="15665" e_stop="15946"/>
            <exon e_start="16484" e_stop="16606"/>
            <exon e_start="17594" e_stop="17744"/>
            <exon e_start="17869" e_stop="18098"/>
            <exon e_start="19071" e_stop="19107"/>
            <exon e_start="19211" e_stop="19553"/>
            <exon e_start="19662" e_stop="19670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.954" e_score="0.997"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12311" e_stop="12686" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13831" e_stop="14042" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.981">
            <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15665" e_stop="15946" e_length="282"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16484" e_stop="16606" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17594" e_stop="17744" e_length="151"/>
          </exon>
          <intron i_serial="5" don_prob="0.894" acc_prob="0.993">
            <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17869" e_stop="18098" e_length="230"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="18099" i_stop="19070" i_length="972"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19071" e_stop="19107" e_length="37"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="19211" e_stop="19553" e_length="343"/>
          </exon>
          <intron i_serial="8" don_prob="0.900" acc_prob="0.954">
            <gDNA_intron_boundary i_start="19554" i_stop="19661" i_length="108"/>
          </intron>
          <exon e_serial="9" e_score="0.667">
            <gDNA_exon_boundary e_start="19662" e_stop="19670" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12311" stop="12686"/>
              <exon start="13831" stop="13979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12311" stop="12673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12314" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17744"/>
              <exon start="17869" stop="18098"/>
              <exon start="19071" stop="19107"/>
              <exon start="19211" stop="19553"/>
              <exon start="19662" stop="19670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12314" stop="12686"/>
              <exon start="13831" stop="13991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="14042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="14035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="14026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="14026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="14026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="13963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="13934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="13927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="13883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12322" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12327" stop="12686"/>
              <exon start="13831" stop="13963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12330" stop="12686"/>
              <exon start="13831" stop="13965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12331" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12337" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12338" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12343" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12344" stop="12686"/>
              <exon start="13831" stop="13955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12376" stop="12686"/>
              <exon start="13831" stop="14006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12422" stop="12686"/>
              <exon start="13831" stop="14006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13890" stop="14042"/>
              <exon start="15665" stop="15923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13937" stop="14042"/>
              <exon start="15665" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17744"/>
              <exon start="17869" stop="17974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13937" stop="14042"/>
              <exon start="15665" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17744"/>
              <exon start="17869" stop="17924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13937" stop="14042"/>
              <exon start="15665" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13937" stop="14042"/>
              <exon start="15665" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13937" stop="14042"/>
              <exon start="15665" stop="15946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13981" stop="14042"/>
              <exon start="15665" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14023" stop="14042"/>
              <exon start="15665" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14023" stop="14042"/>
              <exon start="15665" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14023" stop="14042"/>
              <exon start="15665" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15672" stop="15946"/>
              <exon start="16484" stop="16593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15683" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17744"/>
              <exon start="17869" stop="18098"/>
              <exon start="19071" stop="19107"/>
              <exon start="19211" stop="19254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15818" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15820" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17744"/>
              <exon start="17869" stop="17988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16545" stop="16606"/>
              <exon start="17594" stop="17710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16546" stop="16606"/>
              <exon start="17594" stop="17744"/>
              <exon start="17869" stop="18098"/>
              <exon start="19071" stop="19107"/>
              <exon start="19211" stop="19445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16546" stop="16606"/>
              <exon start="17594" stop="17744"/>
              <exon start="17869" stop="18098"/>
              <exon start="19071" stop="19107"/>
              <exon start="19211" stop="19341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16546" stop="16606"/>
              <exon start="17594" stop="17744"/>
              <exon start="17869" stop="18098"/>
              <exon start="19071" stop="19107"/>
              <exon start="19211" stop="19246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17604" stop="17744"/>
              <exon start="17869" stop="17989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17635" stop="17744"/>
              <exon start="17869" stop="18098"/>
              <exon start="19071" stop="19107"/>
              <exon start="19211" stop="19553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260734" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17878" stop="18098"/>
              <exon start="19071" stop="19107"/>
              <exon start="19211" stop="19553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317936" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17894" stop="18098"/>
              <exon start="19071" stop="19107"/>
              <exon start="19211" stop="19553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19073" stop="19107"/>
              <exon start="19211" stop="19550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261166" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG : GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG : GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT : GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG : GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAG : GTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCT : GCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAG : CTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAATAT : GCAAAAATA</gDNA_template>
            <first_frame> L  *  L  T  M  N  S  A  S  I  S  S  I  E  F  R  T  F  S  N  L  P  S  R  R  T  A  Y  L  T  H  R  R  V  A  E  T  L  H  Q  S  A  S  S  L  P  E  R  V  G  S  S  S  S  K  A  G  R  K  S  F  I  R  Y  T  V  S  A  S  Y  G  D  K  E  S  G  S  V  N  S  N  E  F  T  S  P  A  K  A  L  R  K  L  L  E  S  P  G  V  H  Q  G  P  A  C  F  D  A  L  S  A  K  L  V  E  R  A  G  F  D  F  C  F  T  T   : G  F  G  I  S  A  A  R  L  G  L  P  D  A  G  L  I  S  Y  G  E  M  V  A  Q  G  L  E  I  T  Q  A  V  S  I  P  V  I  G  D  G  D  N  G  Y  G  N  A  M  N  V  K  R  T  V  K  G  Y  I  R  A  G  F  G  G  I  I  L  E  D  Q  :  V  S  P  K  A  C  G  H  T  R  G  R  K  V  V  S  R  E  E  A  I  M  R  I  K  A  A  V  D  A  R  K  E  S  G  S  D  I  V  I  V  A  R  T  D  A  R  Q  A  V  S  F  E  E  A  I  W  R  A  R  A  L  A  D  A  G  A  D  V  L  F  I  D  A  L  A  S  K  E  E  M  K  A  F  C  D  V  Y  P  L  V  P  K  L  :  A  N  M  L  E  G  G  G  K  T  P  I  F  T  P  I  E  L  E  E  L  G  Y  K  L  V  A  Y  P  L  S  L  I  G  V  S  I  G  A  M  Q  :  D  A  L  S  A  I  K  G  G  R  I  P  S  P  G  S  M  P  S  F  E  E  L  K  E  I  L  G  F  N  T  Y  Y  E  E  E  K  R  Y  A  T  T  S  S  Q  L  P  S  R  K   : G  D  F  S  S  N  S  N  E  Y  G  V  Q  P  G  I  Q  A  D  R  V  Q  R  T  Q  I  P  E  N  P  V  E  V  L  I  P  E  V  Y  D  R  F  S  G  E  G  K  K  G  N  F  S  M  A  W  S  R  K  L  R  V  K  I  T  G  K  D  G  F  E  K  L  D  I  R  I  P  :  A  G  F  L  E  G  I  T  N  I  V  P   : A  L  V  G  V  N  I  K  S  L  L  D  E  A  T  L  E  E  G  G  K  Q  L  L  D  F  Q  D  T  M  G  D  R  I  Q  V  I  L  E  *  R  R  S  C  F  L  F  L  Y  F  D  E  *  I  L  Y  G  K  *  C  T  I  P  S  L  A  W  P  L  R  F  G  L  N  G  R  A  *  C  I  *  N  N  V  W  V  K  R  M  L  Q  K  S  M  V  L  F  S  A  C  N  P  L  K  Y  *  S  I  I  *  F  S  *  N  M :   Q  K   </first_frame>
            <second_frame>  C  D  *  Q  *  I  P  H  Q  F  P  A  *  S  S  E  L  S  R  I  F  R  H  A  E  L  H  T  *  L  T  G  A  *  P  R  R  S  I  K  V  L  L  H  C  R  K  E  *  V  A  A  V  A  K  L  E  G  N  H  L  F  A  T  L  S  L  L  A  M  V  I  R  N  R  V  Q  L  T  L  M  S  L  L  L  Q  R  R  H  S  G  N  Y  *  N  R  R  E  F  I  K  D  Q  L  V  S  M  L  S  V  L  S  L  L  N  E  L  G  S  I  S  A  L  Q  L  :  V  L  E  Y  L  L  H  G  *  D  C  Q  M  Q  D  *  F  L  T  E  R  W  W  L  K  V  *  R  S  H  K  Q  C  P  Y  Q  *  L  G  M  E  I  M  D  M  A  T  P  *  M  S  R  E  L  *  K  D  I  L  E  Q  V  S  G  E  *  S  L  K  I  R :   F  L  P  K  H  V  V  T  H  V  A  G  K  L  F  L  G  R  K  Q  S  *  E  *  K  R  L  L  M  L  E  K  K  V  D  L  T  S  *  L  W  H  V  L  M  H  V  K  Q  S  P  L  K  K  P  F  G  G  H  V  L  L  L  M  L  E  L  M  F  C  S  *  M  L  L  L  P  K  K  R  *  K  L  S  V  M  S  I  H  W  F  R  S  L :   Q  I  C  L  K  V  V  V  K  H  Q  Y  S  L  Q  L  N  L  R  N  L  D  T  N  W  W  H  I  H  F  P  *  L  G  Y  Q  S  V  Q  C  R :   M  H  C  L  P  L  K  E  V  G  Y  H  R  R  V  A  C  L  H  L  K  S  *  K  R  S  *  V  S  I  P  T  M  K  K  R  S  V  M  Q  Q  Q  A  V  N  F  L  L  V  K  :  V  I  S  H  Q  T  A  M  S  M  V  F  N  P  A  S  K  L  I  E  C  R  G  L  K  Y  P  R  I  L  L  R  Y  *  Y  L  R  C  M  T  D  F  L  V  R  V  R  K  E  I  S  Q  W  P  G  L  G  N  *  E  S  R  L  L  E  K  M  D  L  K  N  *  I  S  E  F  L :   L  D  F  W  K  E  S  Q  T  *  F  Q  :  L  W  *  V  *  T  S  S  L  C  W  M  R  Q  L  *  K  R  V  G  N  N  C  W  I  F  R  I  Q  W  V  T  G  Y  K  L  F  W  S  K  G  D  L  A  S  Y  S  C  I  L  M  N  E  Y  Y  M  A  N  D  V  Q  S  L  A  *  L  G  P  S  D  L  V  *  M  E  E  H  N  A  Y  E  I  M  C  G  L  S  A  C  Y  K  R  V  W  Y  C  F  L  H  V  I  P  *  N  I  D  Q  *  Y  N  L  V  K  I   : C  K  N  </second_frame>
            <third_frame>   V  I  D  N  E  F  R  I  N  F  Q  H  R  V  Q  N  F  L  E  S  S  V  T  P  N  C  I  L  N  S  P  A  R  S  R  D  A  P  S  K  C  F  F  I  A  G  K  S  R  *  Q  Q  *  Q  S  W  K  E  I  I  Y  S  L  H  C  L  C  *  L  W  *  *  G  I  G  F  S  *  L  *  *  V  Y  F  S  S  E  G  T  P  E  T  I  R  I  A  G  S  S  S  R  T  S  L  F  R  C  S  Q  C  *  A  C  *  T  S  W  V  R  F  L  L  Y  N  W :   F  W  N  I  C  C  T  V  R  T  A  R  C  R  T  N  F  L  R  R  D  G  G  S  R  S  R  D  H  T  S  S  V  H  T  S  N  W  G  W  R  *  W  I  W  Q  R  H  E  C  Q  E  N  C  E  R  I  Y  *  S  R  F  R  G  N  N  P  *  R  S   : G  F  S  Q  S  M  W  S  H  T  W  Q  E  S  C  F  S  G  G  S  N  H  E  N  K  S  G  C  *  C  S  K  R  K  W  I  *  H  R  D  C  G  T  Y  *  C  T  S  S  S  L  L  *  R  S  H  L  A  G  T  C  S  C  *  C  W  S  *  C  S  V  H  R  C  S  C  F  Q  R  R  D  E  S  F  L  *  C  L  S  T  G  S  E  A   : C  K  Y  A  *  R  W  W  *  N  T  N  I  H  S  N  *  T  *  G  T  W  I  Q  T  G  G  I  S  T  F  L  D  W  G  I  N  R  C  N  A   : G  C  I  V  C  H  *  R  R  S  D  T  I  A  G  *  H  A  F  I  *  R  A  K  R  D  P  R  F  Q  Y  L  L  *  R  R  E  A  L  C  N  N  K  Q  S  T  S  F  S  *  R :   *  F  L  I  K  Q  Q  *  V  W  C  S  T  R  H  P  S  *  *  S  A  E  D  S  N  T  R  E  S  C  *  G  I  D  T  *  G  V  *  Q  I  F  W  *  G  *  E  R  K  F  L  N  G  L  V  S  E  I  E  S  Q  D  Y  W  K  R  W  I  *  K  T  R  Y  Q  N  S   : C  W  I  F  G  R  N  H  K  H  S  S  S :   F  G  R  C  K  H  Q  V  S  V  G  *  G  N  F  R  R  G  W  E  T  I  V  G  F  S  G  Y  N  G  *  Q  D  T  S  Y  F  G  V  K  E  I  L  L  L  I  P  V  F  *  *  M  N  I  I  W  Q  M  M  Y  N  P  *  L  S  L  A  P  Q  I  W  S  K  W  K  S  I  M  H  M  K  *  C  V  G  *  A  H  V  T  K  E  Y  G  I  V  F  C  M  *  S  P  K  I  L  I  N  N  I  I  *  L  K  Y  :  A  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12317" stop="12686"/>
                    <exon start="13831" stop="14042"/>
                    <exon start="15665" stop="15946"/>
                    <exon start="16484" stop="16606"/>
                    <exon start="17594" stop="17744"/>
                    <exon start="17869" stop="18098"/>
                    <exon start="19071" stop="19107"/>
                    <exon start="19211" stop="19329"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1521</number_coding_nucleotides>
                  <number_encoded_amino_acids>507</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTMNSASISSIEFRTFSNLPSRRTAYLTHRRVAETLHQSASSLPERVGSSSSKAGRKSFIRYTVSASYGDKESGSVNSNEFTSPAKALRKLLESPGVHQGPACFDALSAKLVERAGFDFCFTTGFGISAARLGLPDAGLISYGEMVAQGLEITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIRAGFGGIILEDQVSPKACGHTRGRKVVSREEAIMRIKAAVDARKESGSDIVIVARTDARQAVSFEEAIWRARALADAGADVLFIDALASKEEMKAFCDVYPLVPKLANMLEGGGKTPIFTPIELEELGYKLVAYPLSLIGVSIGAMQDALSAIKGGRIPSPGSMPSFEELKEILGFNTYYEEEKRYATTSSQLPSRKGDFSSNSNEYGVQPGIQADRVQRTQIPENPVEVLIPEVYDRFSGEGKKGNFSMAWSRKLRVKITGKDGFEKLDIRIPAGFLEGITNIVPALVGVNIKSLLDEATLEEGGKQLLDFQDTMGDRIQVILE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12311" e_stop="12686"/>
            <exon e_start="13831" e_stop="14042"/>
            <exon e_start="15665" e_stop="15946"/>
            <exon e_start="16484" e_stop="16606"/>
            <exon e_start="16665" e_stop="16674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12311" e_stop="12686" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13831" e_stop="14042" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.981">
            <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15665" e_stop="15946" e_length="282"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16484" e_stop="16606" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16607" i_stop="16664" i_length="58"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="16665" e_stop="16674" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12311" stop="12686"/>
              <exon start="13831" stop="13979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12311" stop="12673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12314" stop="12686"/>
              <exon start="13831" stop="13991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="14042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="14035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="14026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="14026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="14026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="13963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="13934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="13927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12319" stop="12686"/>
              <exon start="13831" stop="13883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12322" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12327" stop="12686"/>
              <exon start="13831" stop="13963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12330" stop="12686"/>
              <exon start="13831" stop="13965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12331" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12337" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12338" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12343" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12344" stop="12686"/>
              <exon start="13831" stop="13955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12376" stop="12686"/>
              <exon start="13831" stop="14006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12422" stop="12686"/>
              <exon start="13831" stop="14006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13890" stop="14042"/>
              <exon start="15665" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="16665" stop="16672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13890" stop="14042"/>
              <exon start="15665" stop="15923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13937" stop="14042"/>
              <exon start="15665" stop="15946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13977" stop="14042"/>
              <exon start="15665" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="16665" stop="16674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15672" stop="15946"/>
              <exon start="16484" stop="16593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG : GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG : GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT : GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG : GTTTTATAGT</gDNA_template>
            <first_frame> L  *  L  T  M  N  S  A  S  I  S  S  I  E  F  R  T  F  S  N  L  P  S  R  R  T  A  Y  L  T  H  R  R  V  A  E  T  L  H  Q  S  A  S  S  L  P  E  R  V  G  S  S  S  S  K  A  G  R  K  S  F  I  R  Y  T  V  S  A  S  Y  G  D  K  E  S  G  S  V  N  S  N  E  F  T  S  P  A  K  A  L  R  K  L  L  E  S  P  G  V  H  Q  G  P  A  C  F  D  A  L  S  A  K  L  V  E  R  A  G  F  D  F  C  F  T  T   : G  F  G  I  S  A  A  R  L  G  L  P  D  A  G  L  I  S  Y  G  E  M  V  A  Q  G  L  E  I  T  Q  A  V  S  I  P  V  I  G  D  G  D  N  G  Y  G  N  A  M  N  V  K  R  T  V  K  G  Y  I  R  A  G  F  G  G  I  I  L  E  D  Q  :  V  S  P  K  A  C  G  H  T  R  G  R  K  V  V  S  R  E  E  A  I  M  R  I  K  A  A  V  D  A  R  K  E  S  G  S  D  I  V  I  V  A  R  T  D  A  R  Q  A  V  S  F  E  E  A  I  W  R  A  R  A  L  A  D  A  G  A  D  V  L  F  I  D  A  L  A  S  K  E  E  M  K  A  F  C  D  V  Y  P  L  V  P  K  L  :  A  N  M  L  E  G  G  G  K  T  P  I  F  T  P  I  E  L  E  E  L  G  Y  K  L  V  A  Y  P  L  S  L  I  G  V  S  I  G  A  M  Q  :  V  L  *  </first_frame>
            <second_frame>  C  D  *  Q  *  I  P  H  Q  F  P  A  *  S  S  E  L  S  R  I  F  R  H  A  E  L  H  T  *  L  T  G  A  *  P  R  R  S  I  K  V  L  L  H  C  R  K  E  *  V  A  A  V  A  K  L  E  G  N  H  L  F  A  T  L  S  L  L  A  M  V  I  R  N  R  V  Q  L  T  L  M  S  L  L  L  Q  R  R  H  S  G  N  Y  *  N  R  R  E  F  I  K  D  Q  L  V  S  M  L  S  V  L  S  L  L  N  E  L  G  S  I  S  A  L  Q  L  :  V  L  E  Y  L  L  H  G  *  D  C  Q  M  Q  D  *  F  L  T  E  R  W  W  L  K  V  *  R  S  H  K  Q  C  P  Y  Q  *  L  G  M  E  I  M  D  M  A  T  P  *  M  S  R  E  L  *  K  D  I  L  E  Q  V  S  G  E  *  S  L  K  I  R :   F  L  P  K  H  V  V  T  H  V  A  G  K  L  F  L  G  R  K  Q  S  *  E  *  K  R  L  L  M  L  E  K  K  V  D  L  T  S  *  L  W  H  V  L  M  H  V  K  Q  S  P  L  K  K  P  F  G  G  H  V  L  L  L  M  L  E  L  M  F  C  S  *  M  L  L  L  P  K  K  R  *  K  L  S  V  M  S  I  H  W  F  R  S  L :   Q  I  C  L  K  V  V  V  K  H  Q  Y  S  L  Q  L  N  L  R  N  L  D  T  N  W  W  H  I  H  F  P  *  L  G  Y  Q  S  V  Q  C  R :   F  Y  S </second_frame>
            <third_frame>   V  I  D  N  E  F  R  I  N  F  Q  H  R  V  Q  N  F  L  E  S  S  V  T  P  N  C  I  L  N  S  P  A  R  S  R  D  A  P  S  K  C  F  F  I  A  G  K  S  R  *  Q  Q  *  Q  S  W  K  E  I  I  Y  S  L  H  C  L  C  *  L  W  *  *  G  I  G  F  S  *  L  *  *  V  Y  F  S  S  E  G  T  P  E  T  I  R  I  A  G  S  S  S  R  T  S  L  F  R  C  S  Q  C  *  A  C  *  T  S  W  V  R  F  L  L  Y  N  W :   F  W  N  I  C  C  T  V  R  T  A  R  C  R  T  N  F  L  R  R  D  G  G  S  R  S  R  D  H  T  S  S  V  H  T  S  N  W  G  W  R  *  W  I  W  Q  R  H  E  C  Q  E  N  C  E  R  I  Y  *  S  R  F  R  G  N  N  P  *  R  S   : G  F  S  Q  S  M  W  S  H  T  W  Q  E  S  C  F  S  G  G  S  N  H  E  N  K  S  G  C  *  C  S  K  R  K  W  I  *  H  R  D  C  G  T  Y  *  C  T  S  S  S  L  L  *  R  S  H  L  A  G  T  C  S  C  *  C  W  S  *  C  S  V  H  R  C  S  C  F  Q  R  R  D  E  S  F  L  *  C  L  S  T  G  S  E  A   : C  K  Y  A  *  R  W  W  *  N  T  N  I  H  S  N  *  T  *  G  T  W  I  Q  T  G  G  I  S  T  F  L  D  W  G  I  N  R  C  N  A   : G  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12317" stop="12686"/>
                    <exon start="13831" stop="14042"/>
                    <exon start="15665" stop="15946"/>
                    <exon start="16484" stop="16606"/>
                    <exon start="16665" stop="16673"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTMNSASISSIEFRTFSNLPSRRTAYLTHRRVAETLHQSASSLPERVGSSSSKAGRKSFIRYTVSASYGDKESGSVNSNEFTSPAKALRKLLESPGVHQGPACFDALSAKLVERAGFDFCFTTGFGISAARLGLPDAGLISYGEMVAQGLEITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIRAGFGGIILEDQVSPKACGHTRGRKVVSREEAIMRIKAAVDARKESGSDIVIVARTDARQAVSFEEAIWRARALADAGADVLFIDALASKEEMKAFCDVYPLVPKLANMLEGGGKTPIFTPIELEELGYKLVAYPLSLIGVSIGAMQVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20507" PGL_stop="29404"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20507" e_stop="20732"/>
            <exon e_start="22344" e_stop="22396"/>
            <exon e_start="24012" e_stop="24180"/>
            <exon e_start="24304" e_stop="24367"/>
            <exon e_start="25107" e_stop="25186"/>
            <exon e_start="25326" e_stop="25479"/>
            <exon e_start="26322" e_stop="26383"/>
            <exon e_start="26551" e_stop="26613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.744" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20507" e_stop="20732" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20733" i_stop="22343" i_length="1611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22344" e_stop="22396" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22397" i_stop="24011" i_length="1615"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24012" e_stop="24180" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24181" i_stop="24303" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24304" e_stop="24367" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.964">
            <gDNA_intron_boundary i_start="24368" i_stop="25106" i_length="739"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25107" e_stop="25186" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.979">
            <gDNA_intron_boundary i_start="25187" i_stop="25325" i_length="139"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25326" e_stop="25479" e_length="154"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25480" i_stop="26321" i_length="842"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26322" e_stop="26383" e_length="62"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.744">
            <gDNA_intron_boundary i_start="26384" i_stop="26550" i_length="167"/>
          </intron>
          <exon e_serial="8" e_score="0.984">
            <gDNA_exon_boundary e_start="26551" e_stop="26613" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20507" stop="20732"/>
              <exon start="22344" stop="22396"/>
              <exon start="24012" stop="24128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279185" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20515" stop="20732"/>
              <exon start="22344" stop="22396"/>
              <exon start="24012" stop="24180"/>
              <exon start="24304" stop="24367"/>
              <exon start="25107" stop="25186"/>
              <exon start="25326" stop="25452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24155" stop="24180"/>
              <exon start="24304" stop="24367"/>
              <exon start="25107" stop="25186"/>
              <exon start="25326" stop="25479"/>
              <exon start="26322" stop="26383"/>
              <exon start="26551" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24309" stop="24367"/>
              <exon start="25107" stop="25186"/>
              <exon start="25326" stop="25479"/>
              <exon start="26322" stop="26383"/>
              <exon start="26551" stop="26613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324581" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAGGAAAAAAACCCTTACATAGATAGAGAGCAAACCTAAGCTTGAACTCAGCAGCGAATTTTAAGCGTTCATCGTCAATGGACGCCATAAGGAAGCAACTGGATGTGTTAATGGGAGCTAACCGGAACGGCGATGTGACGGAGGTTGATCGGAAGTACTACGACCGTGAAGTTTGCCGTCTTTATCTCTCCGGTCTCTGCCCTCACGAACTCTTTCAGCTCACT : AAAATGGATATGGGGGCATGCCCTAAGGTGCATTCGTTGCCTCTAAGAAAAGA : ATATGAAGAAGCAAAGGCAAAAGGTCAGGATAACTATGACAGGGACTTGGAGGATTTAATAGACAGGCTGATTGTTGAGTGTGACAGGAAAATAACTAGAGCCCTTAAAAGGCTTGATGAGGAGGATGCCAAAGCTGCTATTGCCATATCAGTATCTGAAGTTACCCTG : ACTCCGGAGATTGATGAGTTGTCAAAGCAAATTAAAGAGAAGCTGAAAGAAGCTGACATACATG : ATCTTGAAGGTAAGACAGATATGAAAATTCGAGCTTTGGAAGAAGTTGAAGAACTTCGAACTAAGAGAGCAGACAAACAG : TCAATGCTTCTTTTGGATGCATTCAACAAGGATCGAGCATCTTTGCCGCAGCCACTTCAGAATGCTCCACAGTTGGCACCCTTGCCTGCATCTACTCCAGATCCTCGCATACAGGAAATGATAAATGAGAAACTGAAGAAAGCAGAAGATCTTG : GTGAACAAGGAATGGTTGATGAAGCTCAGAAAGCATTGGAAGAGGCGGAAGCTCTTAAGAAG : CTACCTGTGAGGCAAGAACCTGTTCAGGATTCCTCAAAGTACACTGCAGTTGATGTGCGGATT</gDNA_template>
            <first_frame> E  R  K  K  T  L  T  *  I  E  S  K  P  K  L  E  L  S  S  E  F  *  A  F  I  V  N  G  R  H  K  E  A  T  G  C  V  N  G  S  *  P  E  R  R  C  D  G  G  *  S  E  V  L  R  P  *  S  L  P  S  L  S  L  R  S  L  P  S  R  T  L  S  A  H   : *  N  G  Y  G  G  M  P  *  G  A  F  V  A  S  K  K  R  :  I  *  R  S  K  G  K  R  S  G  *  L  *  Q  G  L  G  G  F  N  R  Q  A  D  C  *  V  *  Q  E  N  N  *  S  P  *  K  A  *  *  G  G  C  Q  S  C  Y  C  H  I  S  I  *  S  Y  P   : D  S  G  D  *  *  V  V  K  A  N  *  R  E  A  E  R  S  *  H  T  * :   S  *  R  *  D  R  Y  E  N  S  S  F  G  R  S  *  R  T  S  N  *  E  S  R  Q  T   : V  N  A  S  F  G  C  I  Q  Q  G  S  S  I  F  A  A  A  T  S  E  C  S  T  V  G  T  L  A  C  I  Y  S  R  S  S  H  T  G  N  D  K  *  E  T  E  E  S  R  R  S  W :   *  T  R  N  G  *  *  S  S  E  S  I  G  R  G  G  S  S  *  E   : A  T  C  E  A  R  T  C  S  G  F  L  K  V  H  C  S  *  C  A  D  </first_frame>
            <second_frame>  R  G  K  K  P  L  H  R  *  R  A  N  L  S  L  N  S  A  A  N  F  K  R  S  S  S  M  D  A  I  R  K  Q  L  D  V  L  M  G  A  N  R  N  G  D  V  T  E  V  D  R  K  Y  Y  D  R  E  V  C  R  L  Y  L  S  G  L  C  P  H  E  L  F  Q  L  T  :  K  M  D  M  G  A  C  P  K  V  H  S  L  P  L  R  K  E :   Y  E  E  A  K  A  K  G  Q  D  N  Y  D  R  D  L  E  D  L  I  D  R  L  I  V  E  C  D  R  K  I  T  R  A  L  K  R  L  D  E  E  D  A  K  A  A  I  A  I  S  V  S  E  V  T  L  :  T  P  E  I  D  E  L  S  K  Q  I  K  E  K  L  K  E  A  D  I  H   : D  L  E  G  K  T  D  M  K  I  R  A  L  E  E  V  E  E  L  R  T  K  R  A  D  K  Q  :  S  M  L  L  L  D  A  F  N  K  D  R  A  S  L  P  Q  P  L  Q  N  A  P  Q  L  A  P  L  P  A  S  T  P  D  P  R  I  Q  E  M  I  N  E  K  L  K  K  A  E  D  L   : G  E  Q  G  M  V  D  E  A  Q  K  A  L  E  E  A  E  A  L  K  K  :  L  P  V  R  Q  E  P  V  Q  D  S  S  K  Y  T  A  V  D  V  R  I </second_frame>
            <third_frame>   E  E  K  N  P  Y  I  D  R  E  Q  T  *  A  *  T  Q  Q  R  I  L  S  V  H  R  Q  W  T  P  *  G  S  N  W  M  C  *  W  E  L  T  G  T  A  M  *  R  R  L  I  G  S  T  T  T  V  K  F  A  V  F  I  S  P  V  S  A  L  T  N  S  F  S  S  L :   K  W  I  W  G  H  A  L  R  C  I  R  C  L  *  E  K   : N  M  K  K  Q  R  Q  K  V  R  I  T  M  T  G  T  W  R  I  *  *  T  G  *  L  L  S  V  T  G  K  *  L  E  P  L  K  G  L  M  R  R  M  P  K  L  L  L  P  Y  Q  Y  L  K  L  P  * :   L  R  R  L  M  S  C  Q  S  K  L  K  R  S  *  K  K  L  T  Y  M  :  I  L  K  V  R  Q  I  *  K  F  E  L  W  K  K  L  K  N  F  E  L  R  E  Q  T  N  S :   Q  C  F  F  W  M  H  S  T  R  I  E  H  L  C  R  S  H  F  R  M  L  H  S  W  H  P  C  L  H  L  L  Q  I  L  A  Y  R  K  *  *  M  R  N  *  R  K  Q  K  I  L  :  V  N  K  E  W  L  M  K  L  R  K  H  W  K  R  R  K  L  L  R  S :   Y  L  *  G  K  N  L  F  R  I  P  Q  S  T  L  Q  L  M  C  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20535" stop="20732"/>
                    <exon start="22344" stop="22396"/>
                    <exon start="24012" stop="24180"/>
                    <exon start="24304" stop="24367"/>
                    <exon start="25107" stop="25186"/>
                    <exon start="25326" stop="25479"/>
                    <exon start="26322" stop="26383"/>
                    <exon start="26551" stop="26613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RANLSLNSAANFKRSSSMDAIRKQLDVLMGANRNGDVTEVDRKYYDREVCRLYLSGLCPHELFQLTKMDMGACPKVHSLPLRKEYEEAKAKGQDNYDRDLEDLIDRLIVECDRKITRALKRLDEEDAKAAIAISVSEVTLTPEIDELSKQIKEKLKEADIHDLEGKTDMKIRALEEVEELRTKRADKQSMLLLDAFNKDRASLPQPLQNAPQLAPLPASTPDPRIQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPVRQEPVQDSSKYTAVDVRI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22255" e_stop="22261"/>
            <exon e_start="22344" e_stop="22396"/>
            <exon e_start="24012" e_stop="24180"/>
            <exon e_start="24304" e_stop="24318"/>
            <exon e_start="29164" e_stop="29404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.766" acc_prob="1.000" e_score="0.429"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.429">
            <gDNA_exon_boundary e_start="22255" e_stop="22261" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.766" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22262" i_stop="22343" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22344" e_stop="22396" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22397" i_stop="24011" i_length="1615"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24012" e_stop="24180" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24181" i_stop="24303" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24304" e_stop="24318" e_length="15"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24319" i_stop="29163" i_length="4845"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29164" e_stop="29404" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22255" stop="22261"/>
              <exon start="22344" stop="22396"/>
              <exon start="24012" stop="24180"/>
              <exon start="24304" stop="24318"/>
              <exon start="29164" stop="29404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCCCAG : AAAATGGATATGGGGGCATGCCCTAAGGTGCATTCGTTGCCTCTAAGAAAAGA : ATATGAAGAAGCAAAGGCAAAAGGTCAGGATAACTATGACAGGGACTTGGAGGATTTAATAGACAGGCTGATTGTTGAGTGTGACAGGAAAATAACTAGAGCCCTTAAAAGGCTTGATGAGGAGGATGCCAAAGCTGCTATTGCCATATCAGTATCTGAAGTTACCCTG : ACTCCGGAGATTGAT : GAGTTGAAATCTTGTGTCTTAACTTGGTGGATGTTTGGTACTTGGTAGTATCTAGGAGCTGATGTCATATATATATACTGCTGTTTTTATTTGGTCGTTTTTGGATTATGAATTGGTTAGGGGGGTGAAGTTTGGTATTTGATTATCAAAATGACATTTTTTTATTGTACCAGCCTTTGAGATTTCTCCTCTTGTGGAGACAATAACCCATTTAAAAATTCTTAGGCTTGTTTTCGCCATC</gDNA_template>
            <first_frame> V  P   : E  N  G  Y  G  G  M  P  *  G  A  F  V  A  S  K  K  R  :  I  *  R  S  K  G  K  R  S  G  *  L  *  Q  G  L  G  G  F  N  R  Q  A  D  C  *  V  *  Q  E  N  N  *  S  P  *  K  A  *  *  G  G  C  Q  S  C  Y  C  H  I  S  I  *  S  Y  P   : D  S  G  D  *   : *  V  E  I  L  C  L  N  L  V  D  V  W  Y  L  V  V  S  R  S  *  C  H  I  Y  I  L  L  F  L  F  G  R  F  W  I  M  N  W  L  G  G  *  S  L  V  F  D  Y  Q  N  D  I  F  L  L  Y  Q  P  L  R  F  L  L  L  W  R  Q  *  P  I  *  K  F  L  G  L  F  S  P   </first_frame>
            <second_frame>  S  Q  :  K  M  D  M  G  A  C  P  K  V  H  S  L  P  L  R  K  E :   Y  E  E  A  K  A  K  G  Q  D  N  Y  D  R  D  L  E  D  L  I  D  R  L  I  V  E  C  D  R  K  I  T  R  A  L  K  R  L  D  E  E  D  A  K  A  A  I  A  I  S  V  S  E  V  T  L  :  T  P  E  I  D  :  E  L  K  S  C  V  L  T  W  W  M  F  G  T  W  *  Y  L  G  A  D  V  I  Y  I  Y  C  C  F  Y  L  V  V  F  G  L  *  I  G  *  G  G  E  V  W  Y  L  I  I  K  M  T  F  F  Y  C  T  S  L  *  D  F  S  S  C  G  D  N  N  P  F  K  N  S  *  A  C  F  R  H  </second_frame>
            <third_frame>   P  R :   K  W  I  W  G  H  A  L  R  C  I  R  C  L  *  E  K   : N  M  K  K  Q  R  Q  K  V  R  I  T  M  T  G  T  W  R  I  *  *  T  G  *  L  L  S  V  T  G  K  *  L  E  P  L  K  G  L  M  R  R  M  P  K  L  L  L  P  Y  Q  Y  L  K  L  P  * :   L  R  R  L  M :   S  *  N  L  V  S  *  L  G  G  C  L  V  L  G  S  I  *  E  L  M  S  Y  I  Y  T  A  V  F  I  W  S  F  L  D  Y  E  L  V  R  G  V  K  F  G  I  *  L  S  K  *  H  F  F  I  V  P  A  F  E  I  S  P  L  V  E  T  I  T  H  L  K  I  L  R  L  V  F  A  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22256" stop="22261"/>
                    <exon start="22344" stop="22396"/>
                    <exon start="24012" stop="24180"/>
                    <exon start="24304" stop="24318"/>
                    <exon start="29164" stop="29211"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQKMDMGACPKVHSLPLRKEYEEAKAKGQDNYDRDLEDLIDRLIVECDRKITRALKRLDEEDAKAAIAISVSEVTLTPEIDELKSCVLTWWMFGTW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29994" PGL_stop="36227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29994" e_stop="30203"/>
            <exon e_start="32252" e_stop="32305"/>
            <exon e_start="32399" e_stop="32544"/>
            <exon e_start="32621" e_stop="32942"/>
            <exon e_start="33069" e_stop="33140"/>
            <exon e_start="35370" e_stop="35435"/>
            <exon e_start="35519" e_stop="35916"/>
            <exon e_start="36199" e_stop="36203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.105" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.705" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29994" e_stop="30203" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32252" e_stop="32305" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.105">
            <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32399" e_stop="32544" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.895" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32621" e_stop="32942" e_length="322"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.879">
            <gDNA_intron_boundary i_start="32943" i_stop="33068" i_length="126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33069" e_stop="33140" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33141" i_stop="35369" i_length="2229"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35370" e_stop="35435" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="35519" e_stop="35916" e_length="398"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.705">
            <gDNA_intron_boundary i_start="35917" i_stop="36198" i_length="282"/>
          </intron>
          <exon e_serial="8" e_score="0.800">
            <gDNA_exon_boundary e_start="36199" e_stop="36203" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29994" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30006" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30011" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30026" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30032" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30040" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30069" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30070" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30083" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32412" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32846" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35405" stop="35435"/>
              <exon start="35519" stop="35916"/>
              <exon start="36199" stop="36203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35405" stop="35435"/>
              <exon start="35519" stop="35916"/>
              <exon start="36199" stop="36203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35405" stop="35435"/>
              <exon start="35519" stop="35908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35406" stop="35435"/>
              <exon start="35519" stop="35916"/>
              <exon start="36199" stop="36203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35681" stop="35916"/>
              <exon start="36199" stop="36203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548173" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTCTTCTCCTCTCTCCTTGTACCGGCGAGCAAAATGACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAG : GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG : GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA : GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAG : GTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAG : GCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACT : CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATA : AAGAA</gDNA_template>
            <first_frame> I  L  F  S  S  L  L  V  P  A  S  K  M  T  T  S  F  G  T  T  A  T  P  A  A  S  A  S  P  A  V  F  P  A  K  N  A  P  K  S  L  T  L  L  P  F  C  H  H  R  H  Y  N  H  L  R  S  K  L  S  I  T  P  K  L  R  F  S  C  K  :  G  L  Q  S  N  W  N  H  S  V  V  T  R  A  Q  S  N  E  :  V  A  L  G  G  S  S  N  N  A  A  T  P  I  T  Q  S  E  E  V  K  S  P  S  E  T  S  S  A  T  S  V  S  E  E  A  I  S  N  F  I  S  Q  V  S  S  L  V  K :   L  V  D  S  R  D  V  V  E  L  Q  L  K  Q  F  D  C  E  I  L  I  R  K  K  E  A  L  P  Q  P  P  A  P  V  P  A  Q  A  P  F  I  Q  S  Y  H  V  P  S  I  Q  S  N  A  S  P  P  P  A  P  A  P  S  P  A  P  I  Q  T  P  A  P  S  P  A  A  A  K  S  A  D  S  S  L  P  P  L  K  S  P  M  A  G  T  F  Y  R  S  P  A  P  G  E  P  A  F  V  K  :  V  G  D  K  V  Q  K  G  Q  V  L  C  I  I  E  A  M  K  L  M  N  E  I  E  :  A  D  R  S  G  T  I  V  E  V  V  A  E  D  G  K  P  V  S  V  D  T  :  P  L  F  V  I  K  P  *  N  R  S  S  K  T  R  E  T  I  C  R  G  T  W  Q  V  F  V  Y  L  G  L  M  I  F  C  S  I  S  V  S  V  S  M  F  A  M  T  G  S  V  M  E  I  G  I  D  D  S  G  *  N  S  L  G  E  F  S  V  *  S  E  V  F  F  G  I  L  L  W  D  S  S  L  L  I  F  S  F  F  S  L  T  Y  L  C  E  V  C  T  S  I  T  I  S  S  H  Y  D  K  D  C  M  Q  F  *  L  F  S  P  W  P  I  R  Y  L  *  L  L  F  Y  V  K  * :   R  </first_frame>
            <second_frame>  F  S  S  P  L  S  L  Y  R  R  A  K  *  R  R  R  S  E  L  R  R  H  R  Q  H  L  L  H  R  R  Y  F  R  P  K  M  P  R  N  P  *  L  C  Y  L  S  A  I  I  A  I  T  I  I  C  V  P  N  Y  L  S  R  P  N  S  D  S  P  V  R :   V  Y  N  L  I  G  I  I  Q  S  *  L  E  P  N  R  M  R :   L  L  L  V  D  L  Q  I  M  Q  L  L  L  S  L  S  Q  K  R  *  N  H  Q  V  R  L  H  L  Q  L  R  Y  Q  R  K  Q  Y  L  T  L  L  A  K  F  Q  A  L  S   : S  *  L  I  L  G  M  L  W  S  C  S  *  N  N  L  I  V  K  F  *  S  V  R  R  R  H  Y  H  N  H  L  L  L  F  L  H  K  L  H  L  Y  N  H  I  M  Y  H  L  Y  N  L  M  H  L  L  H  L  H  L  H  L  H  L  L  Q  F  K  P  L  H  R  L  Q  L  Q  Q  S  Q  L  I  H  L  F  L  R  S  N  P  Q  W  Q  G  H  S  I  E  V  Q  H  P  V  N  Q  H  L  *  R :   S  E  T  K  C  R  R  V  K  F  F  A  L  L  K  R  *  S  *  *  T  K  *  R :   L  I  D  Q  E  P  S  L  R  L  L  L  K  M  E  N  L  S  V  L  I  L :   L  C  L  *  S  S  H  R  T  V  R  V  R  P  G  K  Q  Y  A  E  E  L  G  K  C  L  F  T  L  G  L  *  Y  F  A  V  F  Q  F  Q  *  V  C  L  Q  *  L  V  A  *  W  K  L  E  *  T  I  L  V  K  T  H  *  E  S  L  V  F  N  L  R  Y  S  L  A  F  Y  C  G  I  L  A  Y  S  F  F  P  F  S  V  *  H  I  Y  V  R  F  V  P  R  *  Q  S  H  R  I  M  I  R  I  V  C  S  F  D  Y  L  A  P  G  Q  Y  D  T  Y  N  C  Y  F  M  *  N   : K  E </second_frame>
            <third_frame>   S  L  L  L  S  P  C  T  G  E  Q  N  D  D  V  V  R  N  Y  G  D  T  G  S  I  C  F  T  G  G  I  S  G  Q  K  C  P  E  I  L  D  F  V  T  F  L  P  S  S  P  L  Q  S  F  A  F  Q  I  I  Y  H  A  Q  T  P  I  L  L  *   : G  S  T  I  *  L  E  S  F  S  R  N  *  S  P  I  E  *   : G  C  S  W  W  I  F  K  *  C  S  Y  S  Y  H  S  V  R  R  G  E  I  T  K  *  D  F  I  C  N  F  G  I  R  G  S  N  I  *  L  Y  *  P  S  F  K  P  C  Q  :  A  S  *  F  *  G  C  C  G  A  A  V  K  T  I  *  L  *  N  S  N  P  *  E  G  G  T  T  T  T  T  C  S  C  S  C  T  S  S  I  Y  T  I  I  S  C  T  I  Y  T  I  *  C  I  S  S  T  C  T  C  T  F  T  C  S  N  S  N  P  C  T  V  S  S  C  S  K  V  S  *  F  I  S  S  S  A  Q  I  P  N  G  R  D  I  L  *  K  S  S  T  R  *  T  S  I  C  E   : G  R  R  Q  S  A  E  G  S  S  S  L  H  Y  *  S  D  E  V  D  E  R  N  R   : G  *  S  I  R  N  H  R  *  G  C  C  *  R  W  K  T  C  Q  C  *  Y   : S  S  V  C  D  Q  A  I  E  P  F  E  *  D  P  G  N  N  M  Q  R  N  L  A  S  V  C  L  P  W  A  Y  D  I  L  Q  Y  F  S  F  S  E  Y  V  C  N  D  W  *  R  D  G  N  W  N  R  R  F  W  L  K  L  I  R  R  V  *  C  L  I  *  G  I  L  W  H  F  I  V  G  F  *  L  T  H  F  F  L  F  Q  F  D  I  F  M  *  G  L  Y  L  D  N  N  L  I  A  L  *  *  G  L  Y  A  V  L  I  I  *  P  L  A  N  T  I  L  I  I  A  I  L  C  E  I  :  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29994" stop="30203"/>
                    <exon start="32252" stop="32305"/>
                    <exon start="32399" stop="32544"/>
                    <exon start="32621" stop="32942"/>
                    <exon start="33069" stop="33140"/>
                    <exon start="35370" stop="35435"/>
                    <exon start="35519" stop="35542"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILFSSLLVPASKMTTSFGTTATPAASASPAVFPAKNAPKSLTLLPFCHHRHYNHLRSKLSITPKLRFSCKGLQSNWNHSVVTRAQSNEVALGGSSNNAATPITQSEEVKSPSETSSATSVSEEAISNFISQVSSLVKLVDSRDVVELQLKQFDCEILIRKKEALPQPPAPVPAQAPFIQSYHVPSIQSNASPPPAPAPSPAPIQTPAPSPAAAKSADSSLPPLKSPMAGTFYRSPAPGEPAFVKVGDKVQKGQVLCIIEAMKLMNEIEADRSGTIVEVVAEDGKPVSVDTPLFVIKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29994" e_stop="30203"/>
            <exon e_start="32252" e_stop="32305"/>
            <exon e_start="32399" e_stop="32544"/>
            <exon e_start="32621" e_stop="32942"/>
            <exon e_start="33069" e_stop="33140"/>
            <exon e_start="35370" e_stop="35435"/>
            <exon e_start="35519" e_stop="35951"/>
            <exon e_start="36199" e_stop="36221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.105" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.705" e_score="0.976"/>
          <exon-only e_score="0.696"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29994" e_stop="30203" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32252" e_stop="32305" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.105">
            <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32399" e_stop="32544" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.895" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32621" e_stop="32942" e_length="322"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.879">
            <gDNA_intron_boundary i_start="32943" i_stop="33068" i_length="126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33069" e_stop="33140" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33141" i_stop="35369" i_length="2229"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35370" e_stop="35435" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="0.976">
            <gDNA_exon_boundary e_start="35519" e_stop="35951" e_length="433"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.705">
            <gDNA_intron_boundary i_start="35952" i_stop="36198" i_length="247"/>
          </intron>
          <exon e_serial="8" e_score="0.696">
            <gDNA_exon_boundary e_start="36199" e_stop="36221" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29994" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30006" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30011" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30026" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30032" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30040" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30069" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30070" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30083" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32412" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32785" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35951"/>
              <exon start="36199" stop="36221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32846" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33079" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35405" stop="35435"/>
              <exon start="35519" stop="35908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTCTTCTCCTCTCTCCTTGTACCGGCGAGCAAAATGACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAG : GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG : GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA : GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAG : GTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAG : GCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACT : CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTTACTTGACTCAACATAACTTGGAACT : AAGAAGTCATAGAAAAAAAAAAG</gDNA_template>
            <first_frame> I  L  F  S  S  L  L  V  P  A  S  K  M  T  T  S  F  G  T  T  A  T  P  A  A  S  A  S  P  A  V  F  P  A  K  N  A  P  K  S  L  T  L  L  P  F  C  H  H  R  H  Y  N  H  L  R  S  K  L  S  I  T  P  K  L  R  F  S  C  K  :  G  L  Q  S  N  W  N  H  S  V  V  T  R  A  Q  S  N  E  :  V  A  L  G  G  S  S  N  N  A  A  T  P  I  T  Q  S  E  E  V  K  S  P  S  E  T  S  S  A  T  S  V  S  E  E  A  I  S  N  F  I  S  Q  V  S  S  L  V  K :   L  V  D  S  R  D  V  V  E  L  Q  L  K  Q  F  D  C  E  I  L  I  R  K  K  E  A  L  P  Q  P  P  A  P  V  P  A  Q  A  P  F  I  Q  S  Y  H  V  P  S  I  Q  S  N  A  S  P  P  P  A  P  A  P  S  P  A  P  I  Q  T  P  A  P  S  P  A  A  A  K  S  A  D  S  S  L  P  P  L  K  S  P  M  A  G  T  F  Y  R  S  P  A  P  G  E  P  A  F  V  K  :  V  G  D  K  V  Q  K  G  Q  V  L  C  I  I  E  A  M  K  L  M  N  E  I  E  :  A  D  R  S  G  T  I  V  E  V  V  A  E  D  G  K  P  V  S  V  D  T  :  P  L  F  V  I  K  P  *  N  R  S  S  K  T  R  E  T  I  C  R  G  T  W  Q  V  F  V  Y  L  G  L  M  I  F  C  S  I  S  V  S  V  S  M  F  A  M  T  G  S  V  M  E  I  G  I  D  D  S  G  *  N  S  L  G  E  F  S  V  *  S  E  V  F  F  G  I  L  L  W  D  S  S  L  L  I  F  S  F  F  S  L  T  Y  L  C  E  V  C  T  S  I  T  I  S  S  H  Y  D  K  D  C  M  Q  F  *  L  F  S  P  W  P  I  R  Y  L  *  L  L  F  Y  V  K  *  F  Q  F  T  *  L  N  I  T  W  N   : *  E  V  I  E  K  K  K </first_frame>
            <second_frame>  F  S  S  P  L  S  L  Y  R  R  A  K  *  R  R  R  S  E  L  R  R  H  R  Q  H  L  L  H  R  R  Y  F  R  P  K  M  P  R  N  P  *  L  C  Y  L  S  A  I  I  A  I  T  I  I  C  V  P  N  Y  L  S  R  P  N  S  D  S  P  V  R :   V  Y  N  L  I  G  I  I  Q  S  *  L  E  P  N  R  M  R :   L  L  L  V  D  L  Q  I  M  Q  L  L  L  S  L  S  Q  K  R  *  N  H  Q  V  R  L  H  L  Q  L  R  Y  Q  R  K  Q  Y  L  T  L  L  A  K  F  Q  A  L  S   : S  *  L  I  L  G  M  L  W  S  C  S  *  N  N  L  I  V  K  F  *  S  V  R  R  R  H  Y  H  N  H  L  L  L  F  L  H  K  L  H  L  Y  N  H  I  M  Y  H  L  Y  N  L  M  H  L  L  H  L  H  L  H  L  H  L  L  Q  F  K  P  L  H  R  L  Q  L  Q  Q  S  Q  L  I  H  L  F  L  R  S  N  P  Q  W  Q  G  H  S  I  E  V  Q  H  P  V  N  Q  H  L  *  R :   S  E  T  K  C  R  R  V  K  F  F  A  L  L  K  R  *  S  *  *  T  K  *  R :   L  I  D  Q  E  P  S  L  R  L  L  L  K  M  E  N  L  S  V  L  I  L :   L  C  L  *  S  S  H  R  T  V  R  V  R  P  G  K  Q  Y  A  E  E  L  G  K  C  L  F  T  L  G  L  *  Y  F  A  V  F  Q  F  Q  *  V  C  L  Q  *  L  V  A  *  W  K  L  E  *  T  I  L  V  K  T  H  *  E  S  L  V  F  N  L  R  Y  S  L  A  F  Y  C  G  I  L  A  Y  S  F  F  P  F  S  V  *  H  I  Y  V  R  F  V  P  R  *  Q  S  H  R  I  M  I  R  I  V  C  S  F  D  Y  L  A  P  G  Q  Y  D  T  Y  N  C  Y  F  M  *  N  S  F  N  L  L  D  S  T  *  L  G  T  :  K  K  S  *  K  K  K   </second_frame>
            <third_frame>   S  L  L  L  S  P  C  T  G  E  Q  N  D  D  V  V  R  N  Y  G  D  T  G  S  I  C  F  T  G  G  I  S  G  Q  K  C  P  E  I  L  D  F  V  T  F  L  P  S  S  P  L  Q  S  F  A  F  Q  I  I  Y  H  A  Q  T  P  I  L  L  *   : G  S  T  I  *  L  E  S  F  S  R  N  *  S  P  I  E  *   : G  C  S  W  W  I  F  K  *  C  S  Y  S  Y  H  S  V  R  R  G  E  I  T  K  *  D  F  I  C  N  F  G  I  R  G  S  N  I  *  L  Y  *  P  S  F  K  P  C  Q  :  A  S  *  F  *  G  C  C  G  A  A  V  K  T  I  *  L  *  N  S  N  P  *  E  G  G  T  T  T  T  T  C  S  C  S  C  T  S  S  I  Y  T  I  I  S  C  T  I  Y  T  I  *  C  I  S  S  T  C  T  C  T  F  T  C  S  N  S  N  P  C  T  V  S  S  C  S  K  V  S  *  F  I  S  S  S  A  Q  I  P  N  G  R  D  I  L  *  K  S  S  T  R  *  T  S  I  C  E   : G  R  R  Q  S  A  E  G  S  S  S  L  H  Y  *  S  D  E  V  D  E  R  N  R   : G  *  S  I  R  N  H  R  *  G  C  C  *  R  W  K  T  C  Q  C  *  Y   : S  S  V  C  D  Q  A  I  E  P  F  E  *  D  P  G  N  N  M  Q  R  N  L  A  S  V  C  L  P  W  A  Y  D  I  L  Q  Y  F  S  F  S  E  Y  V  C  N  D  W  *  R  D  G  N  W  N  R  R  F  W  L  K  L  I  R  R  V  *  C  L  I  *  G  I  L  W  H  F  I  V  G  F  *  L  T  H  F  F  L  F  Q  F  D  I  F  M  *  G  L  Y  L  D  N  N  L  I  A  L  *  *  G  L  Y  A  V  L  I  I  *  P  L  A  N  T  I  L  I  I  A  I  L  C  E  I  V  S  I  Y  L  T  Q  H  N  L  E  L :   R  S  H  R  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29994" stop="30203"/>
                    <exon start="32252" stop="32305"/>
                    <exon start="32399" stop="32544"/>
                    <exon start="32621" stop="32942"/>
                    <exon start="33069" stop="33140"/>
                    <exon start="35370" stop="35435"/>
                    <exon start="35519" stop="35542"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILFSSLLVPASKMTTSFGTTATPAASASPAVFPAKNAPKSLTLLPFCHHRHYNHLRSKLSITPKLRFSCKGLQSNWNHSVVTRAQSNEVALGGSSNNAATPITQSEEVKSPSETSSATSVSEEAISNFISQVSSLVKLVDSRDVVELQLKQFDCEILIRKKEALPQPPAPVPAQAPFIQSYHVPSIQSNASPPPAPAPSPAPIQTPAPSPAAAKSADSSLPPLKSPMAGTFYRSPAPGEPAFVKVGDKVQKGQVLCIIEAMKLMNEIEADRSGTIVEVVAEDGKPVSVDTPLFVIKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="29994" e_stop="30203"/>
            <exon e_start="32252" e_stop="32305"/>
            <exon e_start="32399" e_stop="32544"/>
            <exon e_start="32621" e_stop="32942"/>
            <exon e_start="33069" e_stop="33140"/>
            <exon e_start="35370" e_stop="35435"/>
            <exon e_start="35519" e_stop="35926"/>
            <exon e_start="36211" e_stop="36227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.105" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29994" e_stop="30203" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="30204" i_stop="32251" i_length="2048"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32252" e_stop="32305" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.105">
            <gDNA_intron_boundary i_start="32306" i_stop="32398" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32399" e_stop="32544" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.895" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32545" i_stop="32620" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32621" e_stop="32942" e_length="322"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.879">
            <gDNA_intron_boundary i_start="32943" i_stop="33068" i_length="126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33069" e_stop="33140" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33141" i_stop="35369" i_length="2229"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35370" e_stop="35435" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="35436" i_stop="35518" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="35519" e_stop="35926" e_length="408"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35927" i_stop="36210" i_length="284"/>
          </intron>
          <exon e_serial="8" e_score="0.941">
            <gDNA_exon_boundary e_start="36211" e_stop="36227" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29994" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30006" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30011" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30026" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30032" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30040" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30069" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30070" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30083" stop="30203"/>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32252" stop="32305"/>
              <exon start="32399" stop="32544"/>
              <exon start="32621" stop="32743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32412" stop="32544"/>
              <exon start="32621" stop="32942"/>
              <exon start="33069" stop="33140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32816" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35926"/>
              <exon start="36211" stop="36227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32846" stop="32942"/>
              <exon start="33069" stop="33140"/>
              <exon start="35370" stop="35435"/>
              <exon start="35519" stop="35862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35405" stop="35435"/>
              <exon start="35519" stop="35908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTCTTCTCCTCTCTCCTTGTACCGGCGAGCAAAATGACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCAAAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAACTCCGATTCTCCTGTAAG : GGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAG : GTTGCTCTTGGTGGATCTTCAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAATATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAA : GCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTGAAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCATCTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAG : GTCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAG : GCTGATCGATCAGGAACCATCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACT : CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTT : AAAAAAAAAAGAAGAAA</gDNA_template>
            <first_frame> I  L  F  S  S  L  L  V  P  A  S  K  M  T  T  S  F  G  T  T  A  T  P  A  A  S  A  S  P  A  V  F  P  A  K  N  A  P  K  S  L  T  L  L  P  F  C  H  H  R  H  Y  N  H  L  R  S  K  L  S  I  T  P  K  L  R  F  S  C  K  :  G  L  Q  S  N  W  N  H  S  V  V  T  R  A  Q  S  N  E  :  V  A  L  G  G  S  S  N  N  A  A  T  P  I  T  Q  S  E  E  V  K  S  P  S  E  T  S  S  A  T  S  V  S  E  E  A  I  S  N  F  I  S  Q  V  S  S  L  V  K :   L  V  D  S  R  D  V  V  E  L  Q  L  K  Q  F  D  C  E  I  L  I  R  K  K  E  A  L  P  Q  P  P  A  P  V  P  A  Q  A  P  F  I  Q  S  Y  H  V  P  S  I  Q  S  N  A  S  P  P  P  A  P  A  P  S  P  A  P  I  Q  T  P  A  P  S  P  A  A  A  K  S  A  D  S  S  L  P  P  L  K  S  P  M  A  G  T  F  Y  R  S  P  A  P  G  E  P  A  F  V  K  :  V  G  D  K  V  Q  K  G  Q  V  L  C  I  I  E  A  M  K  L  M  N  E  I  E  :  A  D  R  S  G  T  I  V  E  V  V  A  E  D  G  K  P  V  S  V  D  T  :  P  L  F  V  I  K  P  *  N  R  S  S  K  T  R  E  T  I  C  R  G  T  W  Q  V  F  V  Y  L  G  L  M  I  F  C  S  I  S  V  S  V  S  M  F  A  M  T  G  S  V  M  E  I  G  I  D  D  S  G  *  N  S  L  G  E  F  S  V  *  S  E  V  F  F  G  I  L  L  W  D  S  S  L  L  I  F  S  F  F  S  L  T  Y  L  C  E  V  C  T  S  I  T  I  S  S  H  Y  D  K  D  C  M  Q  F  *  L  F  S  P  W  P  I  R  Y  L  *  L  L  F  Y  V  K  *  F  Q  F  :  K  K  K  R  R   </first_frame>
            <second_frame>  F  S  S  P  L  S  L  Y  R  R  A  K  *  R  R  R  S  E  L  R  R  H  R  Q  H  L  L  H  R  R  Y  F  R  P  K  M  P  R  N  P  *  L  C  Y  L  S  A  I  I  A  I  T  I  I  C  V  P  N  Y  L  S  R  P  N  S  D  S  P  V  R :   V  Y  N  L  I  G  I  I  Q  S  *  L  E  P  N  R  M  R :   L  L  L  V  D  L  Q  I  M  Q  L  L  L  S  L  S  Q  K  R  *  N  H  Q  V  R  L  H  L  Q  L  R  Y  Q  R  K  Q  Y  L  T  L  L  A  K  F  Q  A  L  S   : S  *  L  I  L  G  M  L  W  S  C  S  *  N  N  L  I  V  K  F  *  S  V  R  R  R  H  Y  H  N  H  L  L  L  F  L  H  K  L  H  L  Y  N  H  I  M  Y  H  L  Y  N  L  M  H  L  L  H  L  H  L  H  L  H  L  L  Q  F  K  P  L  H  R  L  Q  L  Q  Q  S  Q  L  I  H  L  F  L  R  S  N  P  Q  W  Q  G  H  S  I  E  V  Q  H  P  V  N  Q  H  L  *  R :   S  E  T  K  C  R  R  V  K  F  F  A  L  L  K  R  *  S  *  *  T  K  *  R :   L  I  D  Q  E  P  S  L  R  L  L  L  K  M  E  N  L  S  V  L  I  L :   L  C  L  *  S  S  H  R  T  V  R  V  R  P  G  K  Q  Y  A  E  E  L  G  K  C  L  F  T  L  G  L  *  Y  F  A  V  F  Q  F  Q  *  V  C  L  Q  *  L  V  A  *  W  K  L  E  *  T  I  L  V  K  T  H  *  E  S  L  V  F  N  L  R  Y  S  L  A  F  Y  C  G  I  L  A  Y  S  F  F  P  F  S  V  *  H  I  Y  V  R  F  V  P  R  *  Q  S  H  R  I  M  I  R  I  V  C  S  F  D  Y  L  A  P  G  Q  Y  D  T  Y  N  C  Y  F  M  *  N  S  F  N  L :   K  K  K  E  E  </second_frame>
            <third_frame>   S  L  L  L  S  P  C  T  G  E  Q  N  D  D  V  V  R  N  Y  G  D  T  G  S  I  C  F  T  G  G  I  S  G  Q  K  C  P  E  I  L  D  F  V  T  F  L  P  S  S  P  L  Q  S  F  A  F  Q  I  I  Y  H  A  Q  T  P  I  L  L  *   : G  S  T  I  *  L  E  S  F  S  R  N  *  S  P  I  E  *   : G  C  S  W  W  I  F  K  *  C  S  Y  S  Y  H  S  V  R  R  G  E  I  T  K  *  D  F  I  C  N  F  G  I  R  G  S  N  I  *  L  Y  *  P  S  F  K  P  C  Q  :  A  S  *  F  *  G  C  C  G  A  A  V  K  T  I  *  L  *  N  S  N  P  *  E  G  G  T  T  T  T  T  C  S  C  S  C  T  S  S  I  Y  T  I  I  S  C  T  I  Y  T  I  *  C  I  S  S  T  C  T  C  T  F  T  C  S  N  S  N  P  C  T  V  S  S  C  S  K  V  S  *  F  I  S  S  S  A  Q  I  P  N  G  R  D  I  L  *  K  S  S  T  R  *  T  S  I  C  E   : G  R  R  Q  S  A  E  G  S  S  S  L  H  Y  *  S  D  E  V  D  E  R  N  R   : G  *  S  I  R  N  H  R  *  G  C  C  *  R  W  K  T  C  Q  C  *  Y   : S  S  V  C  D  Q  A  I  E  P  F  E  *  D  P  G  N  N  M  Q  R  N  L  A  S  V  C  L  P  W  A  Y  D  I  L  Q  Y  F  S  F  S  E  Y  V  C  N  D  W  *  R  D  G  N  W  N  R  R  F  W  L  K  L  I  R  R  V  *  C  L  I  *  G  I  L  W  H  F  I  V  G  F  *  L  T  H  F  F  L  F  Q  F  D  I  F  M  *  G  L  Y  L  D  N  N  L  I  A  L  *  *  G  L  Y  A  V  L  I  I  *  P  L  A  N  T  I  L  I  I  A  I  L  C  E  I  V  S  I   : *  K  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29994" stop="30203"/>
                    <exon start="32252" stop="32305"/>
                    <exon start="32399" stop="32544"/>
                    <exon start="32621" stop="32942"/>
                    <exon start="33069" stop="33140"/>
                    <exon start="35370" stop="35435"/>
                    <exon start="35519" stop="35542"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILFSSLLVPASKMTTSFGTTATPAASASPAVFPAKNAPKSLTLLPFCHHRHYNHLRSKLSITPKLRFSCKGLQSNWNHSVVTRAQSNEVALGGSSNNAATPITQSEEVKSPSETSSATSVSEEAISNFISQVSSLVKLVDSRDVVELQLKQFDCEILIRKKEALPQPPAPVPAQAPFIQSYHVPSIQSNASPPPAPAPSPAPIQTPAPSPAAAKSADSSLPPLKSPMAGTFYRSPAPGEPAFVKVGDKVQKGQVLCIIEAMKLMNEIEADRSGTIVEVVAEDGKPVSVDTPLFVIKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="38565" PGL_stop="36029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38565" e_stop="38200"/>
            <exon e_start="36543" e_stop="36444"/>
            <exon e_start="36365" e_stop="36029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38565" e_stop="38200" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="38199" i_stop="36544" i_length="1656"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36543" e_stop="36444" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36365" e_stop="36029" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38565" stop="38200"/>
              <exon start="36543" stop="36444"/>
              <exon start="36365" stop="36075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38506" stop="38200"/>
              <exon start="36543" stop="36444"/>
              <exon start="36365" stop="36029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38502" stop="38200"/>
              <exon start="36543" stop="36444"/>
              <exon start="36365" stop="36029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38494" stop="38200"/>
              <exon start="36543" stop="36444"/>
              <exon start="36365" stop="36075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38483" stop="38200"/>
              <exon start="36543" stop="36466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38442" stop="38200"/>
              <exon start="36543" stop="36444"/>
              <exon start="36365" stop="36030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38442" stop="38200"/>
              <exon start="36543" stop="36444"/>
              <exon start="36365" stop="36031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38442" stop="38200"/>
              <exon start="36543" stop="36444"/>
              <exon start="36365" stop="36040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38388" stop="38200"/>
              <exon start="36543" stop="36444"/>
              <exon start="36365" stop="36047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244003" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38277" stop="38200"/>
              <exon start="36543" stop="36444"/>
              <exon start="36365" stop="36040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244002" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTCTACCTATACATACAGAGCTATACGTATAGATTGATAATAGCAAAAATGGCGTTACAAGTTCAAGTAAATCAGGTACCATTGAAGTCATCAATGGCGCCGGTGCCGGCGCAGTCAGCATCTTCTTCGTGGAGGTTCAACAAACAGTCAGTGGTATGCGTTGCAGGAGATTATGGCTTCTCGTCTAGGGTTTTGAGGAACAGAGGATTGAGCTTGAGGGTGAAGTGTAGTAGCTCAGATGCTACTGTTACTACTACGACTGTGACGGTGGGACAGGTGACGGAAGTTTGTAAGGATACCTTTTGGCCGATTGTTGAAGCCGCCGGTGAAAAAACCGTTGTAGTTGACATGTATACACAGTG : GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG : CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTATGGAGAGTAATCAAGAAAGCTAAATTCTC</gDNA_template>
            <first_frame> L  S  L  P  I  H  T  E  L  Y  V  *  I  D  N  S  K  N  G  V  T  S  S  S  K  S  G  T  I  E  V  I  N  G  A  G  A  G  A  V  S  I  F  F  V  E  V  Q  Q  T  V  S  G  M  R  C  R  R  L  W  L  L  V  *  G  F  E  E  Q  R  I  E  L  E  G  E  V  *  *  L  R  C  Y  C  Y  Y  Y  D  C  D  G  G  T  G  D  G  S  L  *  G  Y  L  L  A  D  C  *  S  R  R  *  K  N  R  C  S  *  H  V  Y  T  V  :  V  W  S  L  *  S  D  C  S  K  V  S  R  A  I  K  E  I  *  R  C  G  L  S  E  A  G  L  *  P  G  Q  Q   : A  T  S  K  G  T  R  H  K  G  G  S  N  I  Q  D  S  E  E  Q  *  D  R  *  R  S  H  R  S  K  T  *  *  F  S  S  S  N  *  G  C  A  I  K  L  N  I  S  S  F  F  F  L  *  L  L  L  F  K  Y  E  A  D  N  V  Y  E  C  R  K  L  V  L  T  K  F  S  V  *  P  W  I  M  K  S  H  *  R  K  W  M  *  C  T  C  L  A  N  V  F  I  L  L  W  R  V  I  K  K  A  K  F   </first_frame>
            <second_frame>  S  L  Y  L  Y  I  Q  S  Y  T  Y  R  L  I  I  A  K  M  A  L  Q  V  Q  V  N  Q  V  P  L  K  S  S  M  A  P  V  P  A  Q  S  A  S  S  S  W  R  F  N  K  Q  S  V  V  C  V  A  G  D  Y  G  F  S  S  R  V  L  R  N  R  G  L  S  L  R  V  K  C  S  S  S  D  A  T  V  T  T  T  T  V  T  V  G  Q  V  T  E  V  C  K  D  T  F  W  P  I  V  E  A  A  G  E  K  T  V  V  V  D  M  Y  T  Q  W :   C  G  P  C  K  V  I  A  P  K  F  Q  E  L  S  K  K  Y  N  D  V  V  F  L  K  L  D  C  N  Q  D  N  R  :  P  L  A  K  E  L  G  I  K  V  V  P  T  F  K  I  L  K  N  N  K  I  V  K  E  V  T  G  A  K  L  D  D  L  V  A  A  I  E  G  V  R  S  S  *  I  F  L  L  F  F  F  Y  D  F  F  C  L  N  M  K  Q  I  M  S  M  N  V  V  N  *  F  *  L  N  S  V  Y  S  R  G  *  *  S  L  I  R  E  N  G  C  D  V  L  V  L  P  M  F  L  F  Y  Y  G  E  *  S  R  K  L  N  S  </second_frame>
            <third_frame>   L  S  T  Y  T  Y  R  A  I  R  I  D  *  *  *  Q  K  W  R  Y  K  F  K  *  I  R  Y  H  *  S  H  Q  W  R  R  C  R  R  S  Q  H  L  L  R  G  G  S  T  N  S  Q  W  Y  A  L  Q  E  I  M  A  S  R  L  G  F  *  G  T  E  D  *  A  *  G  *  S  V  V  A  Q  M  L  L  L  L  L  R  L  *  R  W  D  R  *  R  K  F  V  R  I  P  F  G  R  L  L  K  P  P  V  K  K  P  L  *  L  T  C  I  H  S   : G  V  V  L  V  K  *  L  L  Q  S  F  K  S  Y  Q  R  N  I  T  M  W  S  F  *  S  W  T  V  T  R  T  T  G :   H  *  Q  R  N  *  A  *  R  W  F  Q  H  S  R  F  *  R  T  I  R  S  L  K  K  S  P  E  Q  N  L  M  I  *  *  Q  Q  L  R  V  C  D  Q  V  K  Y  F  F  F  F  F  S  M  T  S  S  V  *  I  *  S  R  *  C  L  *  M  S  *  I  S  S  N  *  I  Q  C  I  A  V  D  N  E  V  S  L  E  K  M  D  V  M  Y  L  S  C  Q  C  F  Y  F  T  M  E  S  N  Q  E  S  *  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38564" stop="38200"/>
                    <exon start="36543" stop="36444"/>
                    <exon start="36365" stop="36231"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLYLYIQSYTYRLIIAKMALQVQVNQVPLKSSMAPVPAQSASSSWRFNKQSVVCVAGDYGFSSRVLRNRGLSLRVKCSSSDATVTTTTVTVGQVTEVCKDTFWPIVEAAGEKTVVVDMYTQWCGPCKVIAPKFQELSKKYNDVVFLKLDCNQDNRPLAKELGIKVVPTFKILKNNKIVKEVTGAKLDDLVAAIEGVRSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36724" e_stop="36724"/>
            <exon e_start="36543" e_stop="36444"/>
            <exon e_start="36365" e_stop="36057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="0.810"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36724" e_stop="36724" e_length="1"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36723" i_stop="36544" i_length="180"/>
          </intron>
          <exon e_serial="2" e_score="0.810">
            <gDNA_exon_boundary e_start="36543" e_stop="36444" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="36365" e_stop="36057" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36724" stop="36724"/>
              <exon start="36543" stop="36444"/>
              <exon start="36365" stop="36057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291088" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>T : GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG : CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTAT</gDNA_template>
            <first_frame>  : C  V  V  L  V  K  *  L  L  Q  S  F  K  S  Y  Q  R  N  I  T  M  W  S  F  *  S  W  T  V  T  R  T  T  G :   H  *  Q  R  N  *  A  *  R  W  F  Q  H  S  R  F  *  R  T  I  R  S  L  K  K  S  P  E  Q  N  L  M  I  *  *  Q  Q  L  R  V  C  D  Q  V  K  Y  F  F  F  F  F  S  M  T  S  S  V  *  I  *  S  R  *  C  L  *  M  S  *  I  S  S  N  *  I  Q  C  I  A  V  D  N  E  V  S  L  E  K  M  D  V  M  Y  L  S  C  Q  C  F  Y  F  T   </first_frame>
            <second_frame>  :  V  W  S  L  *  S  D  C  S  K  V  S  R  A  I  K  E  I  *  R  C  G  L  S  E  A  G  L  *  P  G  Q  Q   : A  T  S  K  G  T  R  H  K  G  G  S  N  I  Q  D  S  E  E  Q  *  D  R  *  R  S  H  R  S  K  T  *  *  F  S  S  S  N  *  G  C  A  I  K  L  N  I  S  S  F  F  F  L  *  L  L  L  F  K  Y  E  A  D  N  V  Y  E  C  R  K  L  V  L  T  K  F  S  V  *  P  W  I  M  K  S  H  *  R  K  W  M  *  C  T  C  L  A  N  V  F  I  L  L  </second_frame>
            <third_frame>  :   C  G  P  C  K  V  I  A  P  K  F  Q  E  L  S  K  K  Y  N  D  V  V  F  L  K  L  D  C  N  Q  D  N  R  :  P  L  A  K  E  L  G  I  K  V  V  P  T  F  K  I  L  K  N  N  K  I  V  K  E  V  T  G  A  K  L  D  D  L  V  A  A  I  E  G  V  R  S  S  *  I  F  L  L  F  F  F  Y  D  F  F  C  L  N  M  K  Q  I  M  S  M  N  V  V  N  *  F  *  L  N  S  V  Y  S  R  G  *  *  S  L  I  R  E  N  G  C  D  V  L  V  L  P  M  F  L  F  Y  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36542" stop="36444"/>
                    <exon start="36365" stop="36231"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGPCKVIAPKFQELSKKYNDVVFLKLDCNQDNRPLAKELGIKVVPTFKILKNNKIVKEVTGAKLDDLVAAIEGVRSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40264" PGL_stop="47751"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44201" e_stop="44222"/>
            <exon e_start="44299" e_stop="44370"/>
            <exon e_start="44916" e_stop="44989"/>
            <exon e_start="45730" e_stop="46392"/>
            <exon e_start="46472" e_stop="46597"/>
            <exon e_start="46738" e_stop="46842"/>
            <exon e_start="46926" e_stop="47000"/>
            <exon e_start="47155" e_stop="47618"/>
            <exon e_start="47743" e_stop="47751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.281" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.821" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.720" e_score="0.989"/>
          <exon-only e_score="0.444"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44201" e_stop="44222" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.281" acc_prob="0.980">
            <gDNA_intron_boundary i_start="44223" i_stop="44298" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44299" e_stop="44370" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.993">
            <gDNA_intron_boundary i_start="44371" i_stop="44915" i_length="545"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44916" e_stop="44989" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.876" acc_prob="0.997">
            <gDNA_intron_boundary i_start="44990" i_stop="45729" i_length="740"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45730" e_stop="46392" e_length="663"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.882">
            <gDNA_intron_boundary i_start="46393" i_stop="46471" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46472" e_stop="46597" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.821">
            <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46738" e_stop="46842" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46926" e_stop="47000" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="47155" e_stop="47618" e_length="464"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.720">
            <gDNA_intron_boundary i_start="47619" i_stop="47742" i_length="124"/>
          </intron>
          <exon e_serial="9" e_score="0.444">
            <gDNA_exon_boundary e_start="47743" e_stop="47751" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44201" stop="44222"/>
              <exon start="44299" stop="44370"/>
              <exon start="44916" stop="44989"/>
              <exon start="45730" stop="46094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44318" stop="44370"/>
              <exon start="44916" stop="44989"/>
              <exon start="45730" stop="46392"/>
              <exon start="46472" stop="46557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44952" stop="44989"/>
              <exon start="45730" stop="46392"/>
              <exon start="46472" stop="46589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45988" stop="46392"/>
              <exon start="46472" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46554" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46554" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46564" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46566" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46566" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46566" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46576" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46805" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47618"/>
              <exon start="47743" stop="47751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46805" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47175" stop="47616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47175" stop="47616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357111" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCCTACAGTAATATGTAGAG : CTTATGCCAAAGCTCTTGAAGATGCTGTTGCCGTGCTTGACAAAATTGCAATGACAGTTGATGTTGAAGATC : GTGAAACAATGTTGGGTTTGGTTAAGAGTTGCATCGGCACAAAATTTACTAGTCAATTTGGGGATTTAATTTCA : GATTTAGCAATTGATGCCACAAGAATGGTTGGTGTGGAACTTGGCCAAGGGTTACGCGAGGTGGACATCAAGAAGTACATCAAGATTGAGAAGGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAG : GATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAG : TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG : CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG : ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGATCCAACAAATTGAAG : GAGGCACAA</gDNA_template>
            <first_frame> H  P  T  V  I  C  R   : A  Y  A  K  A  L  E  D  A  V  A  V  L  D  K  I  A  M  T  V  D  V  E  D   : R  E  T  M  L  G  L  V  K  S  C  I  G  T  K  F  T  S  Q  F  G  D  L  I  S  :  D  L  A  I  D  A  T  R  M  V  G  V  E  L  G  Q  G  L  R  E  V  D  I  K  K  Y  I  K  I  E  K  V  P  G  G  Q  L  E  D  S  V  V  L  K  G  V  M  M  N  K  D  V  V  A  P  G  K  M  K  R  K  I  V  N  P  R  I  I  L  L  D  C  P  L  E  Y  K  K  G  E  N  Q  T  N  A  E  L  L  R  E  E  D  W  T  V  L  L  K  M  E  E  E  Y  I  E  N  M  C  A  Q  I  L  K  F  K  P  D  V  V  I  T  E  K  G  L  S  D  L  A  C  H  Y  L  C  K  A  G  V  S  A  I  R  R  L  R  K  T  D  N  N  R  I  A  K  A  C  G  A  V  I  V  N  R  P  D  E  L  Q  E  S  D  V  G  T  G  A  G  L  F  E  V  K  K  I  G  D  E  F  F  T  F  I  V  D  C  K  D  P  K  A  C  T  I  L  L  R  G  A  S  K  D  L  L  N  E  V  E  R  N  L  Q  :  D  A  M  S  V  A  R  N  I  I  K  C  P  K  L  V  P  G  G  G  A  T  E  L  T  V  S  A  M  L  K  Q  K  S  S  S  V  E  G  I  E  K  :  W  P  Y  E  A  A  A  I  A  F  E  A  I  P  R  T  L  A  Q  N  C  G  V  N  V  I  R  T  M  T  A  L  Q  G  K  :  H  A  N  G  E  N  A  W  I  G  I  D  G  N  T  G  E  I  T  D  M  K  E  R  K  :  I  W  D  S  Y  A  V  K  A  Q  A  F  K  T  A  I  E  A  A  C  L  L  L  R  I  D  D  I  V  S  G  I  K  K  K  Q  A  P  G  A  G  Q  G  P  S  K  P  K  I  D  E  E  G  D  A  D  N  D  Q  L  I  P  E  *  T  *  Y  T  M  L  Q  W  K  C  L  C  I  *  *  P  L  G  S  F  H  L  L  Q  Y  S  L  P  L  T  D  C  L  N  F  L  C  L  T  C  N  F  C  C  F  *  L  L  A  V  V  G  C  I  *  N  R  F  C  F  S  F  W  F  *  I  K  F  D  V  A  S  T  M  T  N  Q  C  R  G  I  M  F  F  K  D  P  T  N  *  R :   R  H   </first_frame>
            <second_frame>  I  L  Q  *  Y  V  E  :  L  M  P  K  L  L  K  M  L  L  P  C  L  T  K  L  Q  *  Q  L  M  L  K  I  :  V  K  Q  C  W  V  W  L  R  V  A  S  A  Q  N  L  L  V  N  L  G  I  *  F  Q :   I  *  Q  L  M  P  Q  E  W  L  V  W  N  L  A  K  G  Y  A  R  W  T  S  R  S  T  S  R  L  R  R  C  L  V  G  S  W  K  T  L  W  C  L  K  E  *  *  *  T  K  M  *  L  P  L  A  K  *  R  E  R  L  *  T  L  A  S  F  Y  L  I  V  P  *  S  T  R  K  V  R  T  K  Q  M  Q  S  S  L  E  R  R  I  G  L  S  S  *  K  W  K  K  S  T  L  R  T  C  A  H  R  Y  L  N  S  S  R  M  W  L  L  L  K  R  D  S  V  I  W  H  A  I  I  C  A  R  L  V  S  V  Q  S  E  G  *  G  R  Q  T  I  T  E  L  L  R  H  V  G  Q  L  L  L  I  D  L  M  S  C  K  N  L  M  L  V  L  V  P  V  C  L  K  *  K  K  L  G  M  S  S  L  L  L  L  L  I  A  R  I  R  K  H  V  L  Y  F  *  G  V  R  A  K  I  Y  *  M  K  *  K  E  I  Y  R :   M  P  C  L  S  L  E  T  S  S  S  V  L  S  *  F  P  V  V  V  Q  Q  S  *  L  Y  L  P  C  *  S  R  K  V  H  P  L  K  A  *  K  S :   G  R  M  K  L  L  Q  L  L  L  K  L  Y  H  E  L  W  L  R  T  V  V  *  M  *  F  V  L  *  P  L  F  K  E  S :   M  Q  M  A  R  M  H  G  *  A  L  M  E  T  L  V  R  L  P  T  *  K  S  G  R :   Y  G  I  P  M  L  *  K  H  R  L  L  K  L  P  L  K  L  L  A  Y  F  *  E  L  M  T  L  *  V  E  *  R  R  S  K  P  L  E  Q  D  K  V  H  Q  N  Q  K  *  T  K  K  V  M  Q  T  M  T  S  *  F  R  N  E  H  D  I  L  C  C  N  G  N  A  Y  A  F  D  N  H  L  E  V  F  I  Y  F  S  I  V  C  P  *  L  I  A  *  T  F  C  A  *  H  V  T  S  A  V  F  D  C  W  Q  L  L  V  V  F  E  I  D  F  V  S  V  F  G  F  K  L  N  L  M  L  Q  V  Q  *  L  I  N  V  G  V  S  C  F  S  R  I  Q  Q  I  E   : G  G  T  </second_frame>
            <third_frame>   S  Y  S  N  M  *  S :   L  C  Q  S  S  *  R  C  C  C  R  A  *  Q  N  C  N  D  S  *  C  *  R  S :   *  N  N  V  G  F  G  *  E  L  H  R  H  K  I  Y  *  S  I  W  G  F  N  F   : R  F  S  N  *  C  H  K  N  G  W  C  G  T  W  P  R  V  T  R  G  G  H  Q  E  V  H  Q  D  *  E  G  A  W  W  A  V  G  R  L  C  G  A  *  R  S  N  D  E  Q  R  C  S  C  P  W  Q  N  E  E  K  D  C  K  P  S  H  H  S  T  *  L  S  P  R  V  Q  E  R  *  E  P  N  K  C  R  A  P  *  R  G  G  L  D  C  P  L  E  N  G  R  R  V  H  *  E  H  V  R  T  D  T  *  I  Q  A  G  C  G  Y  Y  *  K  G  T  Q  *  S  G  M  P  L  S  V  Q  G  W  C  Q  C  N  Q  K  A  K  E  D  R  Q  *  Q  N  C  *  G  M  W  G  S  Y  C  *  *  T  *  *  V  A  R  I  *  C  W  Y  W  C  R  S  V  *  S  E  K  N  W  G  *  V  L  Y  F  Y  C  *  L  Q  G  S  E  S  M  Y  Y  T  F  K  G  C  E  Q  R  S  T  E  *  S  R  K  K  S  T   : G  C  H  V  C  R  *  K  H  H  Q  V  S  *  A  S  S  R  W  W  C  N  R  V  N  C  I  C  H  V  K  A  E  K  F  I  R  *  R  H  R  K   : V  A  V  *  S  C  C  N  C  F  *  S  Y  T  T  N  F  G  S  E  L  W  C  K  C  D  S  Y  Y  D  R  S  S  R  K   : A  C  K  W  R  E  C  M  D  R  H  *  W  K  H  W  *  D  Y  R  H  E  R  A  E   : D  M  G  F  L  C  C  K  S  T  G  F  *  N  C  H  *  S  C  L  P  T  S  E  N  *  *  H  C  E  W  N  K  E  E  A  S  P  W  S  R  T  R  S  I  K  T  K  N  R  R  R  R  *  C  R  Q  *  P  A  N  S  G  M  N  M  I  Y  Y  A  A  M  E  M  L  M  H  L  I  T  T  W  K  F  S  S  T  S  V  *  S  A  L  D  *  L  L  E  L  F  V  L  D  M  *  L  L  L  F  L  T  A  G  S  C  W  L  Y  L  K  *  I  L  F  Q  F  L  V  L  N  *  I  *  C  C  K  Y  N  D  *  S  M  *  G  Y  H  V  F  Q  G  S  N  K  L  K  :  E  A  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44201" stop="44222"/>
                    <exon start="44299" stop="44370"/>
                    <exon start="44916" stop="44989"/>
                    <exon start="45730" stop="46392"/>
                    <exon start="46472" stop="46597"/>
                    <exon start="46738" stop="46842"/>
                    <exon start="46926" stop="47000"/>
                    <exon start="47155" stop="47346"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1326</number_coding_nucleotides>
                  <number_encoded_amino_acids>442</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPTVICRAYAKALEDAVAVLDKIAMTVDVEDRETMLGLVKSCIGTKFTSQFGDLISDLAIDATRMVGVELGQGLREVDIKKYIKIEKVPGGQLEDSVVLKGVMMNKDVVAPGKMKRKIVNPRIILLDCPLEYKKGENQTNAELLREEDWTVLLKMEEEYIENMCAQILKFKPDVVITEKGLSDLACHYLCKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFTFIVDCKDPKACTILLRGASKDLLNEVERNLQDAMSVARNIIKCPKLVPGGGATELTVSAMLKQKSSSVEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGEITDMKERKIWDSYAVKAQAFKTAIEAACLLLRIDDIVSGIKKKQAPGAGQGPSKPKIDEEGDADNDQLIPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40264" e_stop="40321"/>
            <exon e_start="46235" e_stop="46392"/>
            <exon e_start="46472" e_stop="46597"/>
            <exon e_start="46738" e_stop="46842"/>
            <exon e_start="46926" e_stop="47000"/>
            <exon e_start="47155" e_stop="47618"/>
            <exon e_start="47743" e_stop="47751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.821" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.720" e_score="0.989"/>
          <exon-only e_score="0.444"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40264" e_stop="40321" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40322" i_stop="46234" i_length="5913"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46235" e_stop="46392" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.882">
            <gDNA_intron_boundary i_start="46393" i_stop="46471" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46472" e_stop="46597" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.821">
            <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46738" e_stop="46842" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46926" e_stop="47000" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="47155" e_stop="47618" e_length="464"/>
          </exon>
          <intron i_serial="6" don_prob="0.961" acc_prob="0.720">
            <gDNA_intron_boundary i_start="47619" i_stop="47742" i_length="124"/>
          </intron>
          <exon e_serial="7" e_score="0.444">
            <gDNA_exon_boundary e_start="47743" e_stop="47751" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40264" stop="40321"/>
              <exon start="46235" stop="46392"/>
              <exon start="46472" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="46930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46554" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46554" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46564" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46566" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46566" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46566" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46576" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46805" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47618"/>
              <exon start="47743" stop="47751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46805" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47175" stop="47616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47175" stop="47616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357111" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGTGTTCTCTCTGCCCTAACCCACCCCCCTCTTGCGAACCCCACAATCTACGAAG : AATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAG : GATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAG : TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG : CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG : ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGATCCAACAAATTGAAG : GAGGCACAA</gDNA_template>
            <first_frame> *  S  V  L  S  A  L  T  H  P  P  L  A  N  P  T  I  Y  E   : E  S  D  V  G  T  G  A  G  L  F  E  V  K  K  I  G  D  E  F  F  T  F  I  V  D  C  K  D  P  K  A  C  T  I  L  L  R  G  A  S  K  D  L  L  N  E  V  E  R  N  L  Q  :  D  A  M  S  V  A  R  N  I  I  K  C  P  K  L  V  P  G  G  G  A  T  E  L  T  V  S  A  M  L  K  Q  K  S  S  S  V  E  G  I  E  K  :  W  P  Y  E  A  A  A  I  A  F  E  A  I  P  R  T  L  A  Q  N  C  G  V  N  V  I  R  T  M  T  A  L  Q  G  K  :  H  A  N  G  E  N  A  W  I  G  I  D  G  N  T  G  E  I  T  D  M  K  E  R  K  :  I  W  D  S  Y  A  V  K  A  Q  A  F  K  T  A  I  E  A  A  C  L  L  L  R  I  D  D  I  V  S  G  I  K  K  K  Q  A  P  G  A  G  Q  G  P  S  K  P  K  I  D  E  E  G  D  A  D  N  D  Q  L  I  P  E  *  T  *  Y  T  M  L  Q  W  K  C  L  C  I  *  *  P  L  G  S  F  H  L  L  Q  Y  S  L  P  L  T  D  C  L  N  F  L  C  L  T  C  N  F  C  C  F  *  L  L  A  V  V  G  C  I  *  N  R  F  C  F  S  F  W  F  *  I  K  F  D  V  A  S  T  M  T  N  Q  C  R  G  I  M  F  F  K  D  P  T  N  *  R :   R  H   </first_frame>
            <second_frame>  E  V  F  S  L  P  *  P  T  P  L  L  R  T  P  Q  S  T  K  :  N  L  M  L  V  L  V  P  V  C  L  K  *  K  K  L  G  M  S  S  L  L  L  L  L  I  A  R  I  R  K  H  V  L  Y  F  *  G  V  R  A  K  I  Y  *  M  K  *  K  E  I  Y  R :   M  P  C  L  S  L  E  T  S  S  S  V  L  S  *  F  P  V  V  V  Q  Q  S  *  L  Y  L  P  C  *  S  R  K  V  H  P  L  K  A  *  K  S :   G  R  M  K  L  L  Q  L  L  L  K  L  Y  H  E  L  W  L  R  T  V  V  *  M  *  F  V  L  *  P  L  F  K  E  S :   M  Q  M  A  R  M  H  G  *  A  L  M  E  T  L  V  R  L  P  T  *  K  S  G  R :   Y  G  I  P  M  L  *  K  H  R  L  L  K  L  P  L  K  L  L  A  Y  F  *  E  L  M  T  L  *  V  E  *  R  R  S  K  P  L  E  Q  D  K  V  H  Q  N  Q  K  *  T  K  K  V  M  Q  T  M  T  S  *  F  R  N  E  H  D  I  L  C  C  N  G  N  A  Y  A  F  D  N  H  L  E  V  F  I  Y  F  S  I  V  C  P  *  L  I  A  *  T  F  C  A  *  H  V  T  S  A  V  F  D  C  W  Q  L  L  V  V  F  E  I  D  F  V  S  V  F  G  F  K  L  N  L  M  L  Q  V  Q  *  L  I  N  V  G  V  S  C  F  S  R  I  Q  Q  I  E   : G  G  T  </second_frame>
            <third_frame>   K  C  S  L  C  P  N  P  P  P  S  C  E  P  H  N  L  R  R :   I  *  C  W  Y  W  C  R  S  V  *  S  E  K  N  W  G  *  V  L  Y  F  Y  C  *  L  Q  G  S  E  S  M  Y  Y  T  F  K  G  C  E  Q  R  S  T  E  *  S  R  K  K  S  T   : G  C  H  V  C  R  *  K  H  H  Q  V  S  *  A  S  S  R  W  W  C  N  R  V  N  C  I  C  H  V  K  A  E  K  F  I  R  *  R  H  R  K   : V  A  V  *  S  C  C  N  C  F  *  S  Y  T  T  N  F  G  S  E  L  W  C  K  C  D  S  Y  Y  D  R  S  S  R  K   : A  C  K  W  R  E  C  M  D  R  H  *  W  K  H  W  *  D  Y  R  H  E  R  A  E   : D  M  G  F  L  C  C  K  S  T  G  F  *  N  C  H  *  S  C  L  P  T  S  E  N  *  *  H  C  E  W  N  K  E  E  A  S  P  W  S  R  T  R  S  I  K  T  K  N  R  R  R  R  *  C  R  Q  *  P  A  N  S  G  M  N  M  I  Y  Y  A  A  M  E  M  L  M  H  L  I  T  T  W  K  F  S  S  T  S  V  *  S  A  L  D  *  L  L  E  L  F  V  L  D  M  *  L  L  L  F  L  T  A  G  S  C  W  L  Y  L  K  *  I  L  F  Q  F  L  V  L  N  *  I  *  C  C  K  Y  N  D  *  S  M  *  G  Y  H  V  F  Q  G  S  N  K  L  K  :  E  A  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40267" stop="40321"/>
                    <exon start="46235" stop="46392"/>
                    <exon start="46472" stop="46597"/>
                    <exon start="46738" stop="46842"/>
                    <exon start="46926" stop="47000"/>
                    <exon start="47155" stop="47346"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVLSALTHPPLANPTIYEESDVGTGAGLFEVKKIGDEFFTFIVDCKDPKACTILLRGASKDLLNEVERNLQDAMSVARNIIKCPKLVPGGGATELTVSAMLKQKSSSVEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGEITDMKERKIWDSYAVKAQAFKTAIEAACLLLRIDDIVSGIKKKQAPGAGQGPSKPKIDEEGDADNDQLIPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="54484" PGL_stop="48938"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54484" e_stop="54178"/>
            <exon e_start="52308" e_stop="51297"/>
            <exon e_start="50312" e_stop="49948"/>
            <exon e_start="49397" e_stop="49328"/>
            <exon e_start="49226" e_stop="48938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.865" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.991" e_score="0.996"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.896"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54484" e_stop="54178" e_length="307"/>
          </exon>
          <intron i_serial="1" don_prob="0.865" acc_prob="0.975">
            <gDNA_intron_boundary i_start="54177" i_stop="52309" i_length="1869"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="52308" e_stop="51297" e_length="1012"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51296" i_stop="50313" i_length="984"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50312" e_stop="49948" e_length="365"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49947" i_stop="49398" i_length="550"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49397" e_stop="49328" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49327" i_stop="49227" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="0.896">
            <gDNA_exon_boundary e_start="49226" e_stop="48938" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54484" stop="54178"/>
              <exon start="52308" stop="52047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54467" stop="54178"/>
              <exon start="52308" stop="52043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54454" stop="54186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54291" stop="54178"/>
              <exon start="52308" stop="51844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54208" stop="54178"/>
              <exon start="52308" stop="51828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52038" stop="51533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51648" stop="51297"/>
              <exon start="50312" stop="49948"/>
              <exon start="49397" stop="49328"/>
              <exon start="49226" stop="49192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51456" stop="51297"/>
              <exon start="50312" stop="49948"/>
              <exon start="49397" stop="49328"/>
              <exon start="49226" stop="49186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301844" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51357" stop="51297"/>
              <exon start="50312" stop="49948"/>
              <exon start="49397" stop="49328"/>
              <exon start="49226" stop="49015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51356" stop="51297"/>
              <exon start="50312" stop="49948"/>
              <exon start="49397" stop="49328"/>
              <exon start="49226" stop="49138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50130" stop="49948"/>
              <exon start="49397" stop="49328"/>
              <exon start="49226" stop="48938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATTCTTCTTCTTCTTTATCCTCTCCATTTTCTTCCTTTTTTTCAATTTCTCATTTCTTCTGGACGATCGCCGGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAG : TTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCTTGAGCCAGAGCCTGAGAGAGAAACCTTCCCCAACTTATCCGTTCCGCCCACTTCCTTAAGGGGTCCATCTCAAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTGCTGCTACCGTCTGTAAGTTTTCCATCGTTAATGGCTACTAAAGAGTCTGATGCAAATCATAGTCAAGTTGGCGATTCTTGTTTCAACCAGACTGATGGTTTTATCCGAGAAAGAGGTTTTCTAGAGGTGTGTCGAAAGCTGAAAGAGCTCCAGCCATGGGCTGATGACACCTTGATCGCAGATGTCTTGGCTGGTGTAAATGATTTCAATAAGGCCTTGACATTGTTGGATGCAATGGTATCTCCTGATCATACATATGTTGCACATGACAACAGAACAACTCCAGAAGAAGCAGATACTCCCTACATACAAAACCTTAAAGACGTAGACACAGATACTAAAGGGGTCAAGTCTAGTAGTAAGAATTCTCTCATGAATATTAACAAGTTTGCTGCTAATAAAGGTGTGTCATTGACAGACAATGTGGATATGGATGAATTGAGCCATGCACTTGCCAAGTGTCTTCAGAGCAACAGTCAGGAACTAATAAATAACTGTGTTTCTCACGAGAACAAACTTCATTTTGATGGAGCAGTGGGGAGTATGAGCTTTGTACCGGTTGAGCCTGAGTGGGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAG : GTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAG : GTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGG : ATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTAGACCCAAGTTCCGACCACGATAAATACGTTCATATGTATATTTTGGGTCCCAATTTAGTGCATTTGTTTCTGTTGCTATCAACTTTGACCTAGAGATTTTGAGTCTTGAACTGGTCTTATAAAAACGACCAGAAACCTGTTGTGGTTATATACTGTTGAATATTTCTGTAATTGCATACCATCAAACATTGTATGTACTTTGCTGATTTCTCCACAGGTCCAAACTAACACTTGAAAGTATATTGGAG</gDNA_template>
            <first_frame> *  I  L  L  L  L  Y  P  L  H  F  L  P  F  F  Q  F  L  I  S  S  G  R  S  P  E  T  Q  S  E  N  S  P  T  V  Y  G  L  Q  K  Q  I  P  I  S  I  A  V  R  R  L  R  R  R  Q  Q  Q  I  S  D  S  S  V  F  I  S  A  L  *  S  F  I  Y  S  F  H  P  V  D  T  I  P  P  V  Q  F  F  L  I  Y  L  T  I  F  L  Y  A  K  R  T  P  K   : V  Y  S  F  S  K  A  V  I  V  L  I  I  R  S  Q  N  L  N  L  N  *  G  D  T  N  *  I  I  A  K  K  R  W  W  C  G  L  K  *  F  K  C  F  Q  C  Q  L  K  M  A  A  S  T  S  V  T  S  P  L  H  K  K  M  S  G  R  R  A  K  T  S  G  W  A  A  F  D  L  N  E  R  L  K  Q  Q  N  L  E  P  E  P  E  R  E  T  F  P  N  L  S  V  P  P  T  S  L  R  G  P  S  Q  S  I  A  K  N  S  G  A  T  L  E  K  P  F  S  S  L  L  L  P  S  V  S  F  P  S  L  M  A  T  K  E  S  D  A  N  H  S  Q  V  G  D  S  C  F  N  Q  T  D  G  F  I  R  E  R  G  F  L  E  V  C  R  K  L  K  E  L  Q  P  W  A  D  D  T  L  I  A  D  V  L  A  G  V  N  D  F  N  K  A  L  T  L  L  D  A  M  V  S  P  D  H  T  Y  V  A  H  D  N  R  T  T  P  E  E  A  D  T  P  Y  I  Q  N  L  K  D  V  D  T  D  T  K  G  V  K  S  S  S  K  N  S  L  M  N  I  N  K  F  A  A  N  K  G  V  S  L  T  D  N  V  D  M  D  E  L  S  H  A  L  A  K  C  L  Q  S  N  S  Q  E  L  I  N  N  C  V  S  H  E  N  K  L  H  F  D  G  A  V  G  S  M  S  F  V  P  V  E  P  E  W  E  E  D  D  I  Y  S  I  H  R  K  D  A  V  K  M  T  R :   S  A  A  R  H  S  K  A  A  S  E  A  Y  L  R  G  D  H  L  S  A  Q  H  F  S  L  K  A  Q  E  E  W  D  A  A  N  R  L  N  A  Q  A  A  K  E  I  L  T  A  C  N  G  K  N  D  Q  W  T  L  D  L  H  G  L  H  A  K  E  A  V  Q  A  L  Q  E  H  L  Q  K  I  E  S  Q  V  A  Q  N  K  R  S  F  G  A  A  V  S  F  D  V  E  N  E  S  K  G  S  H  L  L  N  K  Q  R  P  A  F  L  E  V  I  T   : G  K  G  I  H  S  R  G  Q  A  A  L  P  M  A  I  R  S  F  L  V  E  K  G :   Y  R  Y  E  E  T  R  P  G  V  I  T  V  R  P  K  F  R  P  R  *  I  R  S  Y  V  Y  F  G  S  Q  F  S  A  F  V  S  V  A  I  N  F  D  L  E  I  L  S  L  E  L  V  L  *  K  R  P  E  T  C  C  G  Y  I  L  L  N  I  S  V  I  A  Y  H  Q  T  L  Y  V  L  C  *  F  L  H  R  S  K  L  T  L  E  S  I  L  E </first_frame>
            <second_frame>  E  F  F  F  F  F  I  L  S  I  F  F  L  F  F  N  F  S  F  L  L  D  D  R  R  R  L  N  R  K  I  H  Q  L  F  M  D  C  R  S  R  S  L  S  A  S  P  S  A  V  S  A  A  V  N  N  K  Y  P  I  L  Q  F  S  S  Q  L  S  N  P  S  Y  T  P  F  T  P  W  I  R  Y  L  R  F  S  F  S  *  F  I  L  Q  F  F  Y  M  R  R  E  L  P  K  :  F  T  L  S  V  K  L  S  L  F  *  *  S  G  A  K  T  *  T  *  I  K  E  T  L  I  K  L  *  P  R  R  G  G  G  V  A  *  N  D  L  S  A  F  N  V  N  L  R  W  L  L  L  R  V  *  Q  V  L  Y  I  R  R  C  L  G  G  G  L  R  L  L  V  G  L  H  L  T  S  M  R  D  *  S  N  K  I  L  S  Q  S  L  R  E  K  P  S  P  T  Y  P  F  R  P  L  P  *  G  V  H  L  K  A  S  Q  R  T  V  E  Q  L  *  R  S  L  F  H  P  C  C  Y  R  L  *  V  F  H  R  *  W  L  L  K  S  L  M  Q  I  I  V  K  L  A  I  L  V  S  T  R  L  M  V  L  S  E  K  E  V  F  *  R  C  V  E  S  *  K  S  S  S  H  G  L  M  T  P  *  S  Q  M  S  W  L  V  *  M  I  S  I  R  P  *  H  C  W  M  Q  W  Y  L  L  I  I  H  M  L  H  M  T  T  E  Q  L  Q  K  K  Q  I  L  P  T  Y  K  T  L  K  T  *  T  Q  I  L  K  G  S  S  L  V  V  R  I  L  S  *  I  L  T  S  L  L  L  I  K  V  C  H  *  Q  T  M  W  I  W  M  N  *  A  M  H  L  P  S  V  F  R  A  T  V  R  N  *  *  I  T  V  F  L  T  R  T  N  F  I  L  M  E  Q  W  G  V  *  A  L  Y  R  L  S  L  S  G  K  R  M  I  F  T  R  S  I  G  R  M  Q  *  R  *  R   : G  R  Q  P  D  I  L  R  L  P  V  R  P  I  S  E  E  T  T  Y  L  P  N  I  F  L  *  K  P  K  K  S  G  M  L  L  I  G  *  M  P  R  L  Q  K  K  F  *  L  P  A  T  V  R  M  I  N  G  H  W  T  C  M  V  F  M  Q  K  R  Q  F  K  P  Y  K  N  I  C  K  R  L  N  L  R  W  H  R  I  S  A  A  L  E  L  L  S  L  L  M  W  R  M  R  A  K  G  P  T  Y  *  I  S  S  G  Q  L  S  *  R  S  *  Q  :  V  K  V  F  I  A  G  D  K  L  H  F  Q  W  L  *  E  A  F  S  W  R  R   : D  I  V  M  R  R  Q  G  P  G  *  S  Q  L  D  P  S  S  D  H  D  K  Y  V  H  M  Y  I  L  G  P  N  L  V  H  L  F  L  L  L  S  T  L  T  *  R  F  *  V  L  N  W  S  Y  K  N  D  Q  K  P  V  V  V  I  Y  C  *  I  F  L  *  L  H  T  I  K  H  C  M  Y  F  A  D  F  S  T  G  P  N  *  H  L  K  V  Y  W   </second_frame>
            <third_frame>   N  S  S  S  S  L  S  S  P  F  S  S  F  F  S  I  S  H  F  F  W  T  I  A  G  D  S  I  G  K  F  T  N  C  L  W  I  A  E  A  D  P  Y  Q  H  R  R  P  P  S  P  P  P  S  T  T  N  I  R  F  F  S  F  H  L  S  S  L  I  L  H  I  L  L  S  P  R  G  Y  D  T  S  G  S  V  F  P  D  L  S  Y  N  F  F  I  C  E  E  N  S  Q  S :   L  L  F  Q  *  S  C  H  C  F  N  N  P  E  P  K  L  K  L  E  L  R  R  H  *  L  N  Y  S  Q  E  E  V  V  V  W  L  E  M  I  *  V  L  S  M  S  T  *  D  G  C  F  Y  E  C  D  K  S  S  T  *  E  D  V  W  E  E  G  *  D  F  W  L  G  C  I  *  P  Q  *  E  T  E  A  T  K  S  *  A  R  A  *  E  R  N  L  P  Q  L  I  R  S  A  H  F  L  K  G  S  I  S  K  H  R  K  E  Q  W  S  N  S  R  E  A  F  F  I  L  A  A  T  V  C  K  F  S  I  V  N  G  Y  *  R  V  *  C  K  S  *  S  S  W  R  F  L  F  Q  P  D  *  W  F  Y  P  R  K  R  F  S  R  G  V  S  K  A  E  R  A  P  A  M  G  *  *  H  L  D  R  R  C  L  G  W  C  K  *  F  Q  *  G  L  D  I  V  G  C  N  G  I  S  *  S  Y  I  C  C  T  *  Q  Q  N  N  S  R  R  S  R  Y  S  L  H  T  K  P  *  R  R  R  H  R  Y  *  R  G  Q  V  *  *  *  E  F  S  H  E  Y  *  Q  V  C  C  *  *  R  C  V  I  D  R  Q  C  G  Y  G  *  I  E  P  C  T  C  Q  V  S  S  E  Q  Q  S  G  T  N  K  *  L  C  F  S  R  E  Q  T  S  F  *  W  S  S  G  E  Y  E  L  C  T  G  *  A  *  V  G  R  G  *  Y  L  L  D  P  S  E  G  C  S  E  D  D  E  :  V  G  S  P  T  F  *  G  C  Q  *  G  L  S  Q  R  R  P  L  I  C  P  T  F  F  S  K  S  P  R  R  V  G  C  C  *  *  A  K  C  P  G  C  K  R  N  F  D  C  L  Q  R  *  E  *  S  M  D  T  G  L  A  W  S  S  C  K  R  G  S  S  S  L  T  R  T  F  A  K  D  *  I  S  G  G  T  E  *  A  Q  L  W  S  C  C  L  F  *  C  G  E  *  E  Q  R  V  P  P  I  E  *  A  A  A  S  F  L  R  G  H  N  R :   *  R  Y  S  *  P  G  T  S  C  T  S  N  G  Y  K  K  L  S  R  G  E  G  :  I  S  L  *  G  D  K  A  R  G  D  H  S  *  T  Q  V  P  T  T  I  N  T  F  I  C  I  F  W  V  P  I  *  C  I  C  F  C  C  Y  Q  L  *  P  R  D  F  E  S  *  T  G  L  I  K  T  T  R  N  L  L  W  L  Y  T  V  E  Y  F  C  N  C  I  P  S  N  I  V  C  T  L  L  I  S  P  Q  V  Q  T  N  T  *  K  Y  I  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52189" stop="51297"/>
                    <exon start="50312" stop="49948"/>
                    <exon start="49397" stop="49328"/>
                    <exon start="49226" stop="49163"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1389</number_coding_nucleotides>
                  <number_encoded_amino_acids>463</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKCFQCQLKMAASTSVTSPLHKKMSGRRAKTSGWAAFDLNERLKQQNLEPEPERETFPNLSVPPTSLRGPSQSIAKNSGATLEKPFSSLLLPSVSFPSLMATKESDANHSQVGDSCFNQTDGFIRERGFLEVCRKLKELQPWADDTLIADVLAGVNDFNKALTLLDAMVSPDHTYVAHDNRTTPEEADTPYIQNLKDVDTDTKGVKSSSKNSLMNINKFAANKGVSLTDNVDMDELSHALAKCLQSNSQELINNCVSHENKLHFDGAVGSMSFVPVEPEWEEDDIYSIHRKDAVKMTRSAARHSKAASEAYLRGDHLSAQHFSLKAQEEWDAANRLNAQAAKEILTACNGKNDQWTLDLHGLHAKEAVQALQEHLQKIESQVAQNKRSFGAAVSFDVENESKGSHLLNKQRPAFLEVITGKGIHSRGQAALPMAIRSFLVEKGYRYEETRPGVITVRPKFRPR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54482" stop="54178"/>
                    <exon start="52308" stop="52293"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSSSLSSPFSSFFSISHFFWTIAGDSIGKFTNCLWIAEADPYQHRRPPSPPPSTTNIRFFSFHLSSLILHILLSPRGYDTSGSVFPDLSYNFFICEENSQSLLFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52425" e_stop="51297"/>
            <exon e_start="50312" e_stop="49948"/>
            <exon e_start="49397" e_stop="49328"/>
            <exon e_start="49226" e_stop="48938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.896"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52425" e_stop="51297" e_length="1129"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51296" i_stop="50313" i_length="984"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50312" e_stop="49948" e_length="365"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49947" i_stop="49398" i_length="550"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49397" e_stop="49328" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49327" i_stop="49227" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.896">
            <gDNA_exon_boundary e_start="49226" e_stop="48938" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52425" stop="51920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52425" stop="52116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52038" stop="51533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51648" stop="51297"/>
              <exon start="50312" stop="49948"/>
              <exon start="49397" stop="49328"/>
              <exon start="49226" stop="49192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51456" stop="51297"/>
              <exon start="50312" stop="49948"/>
              <exon start="49397" stop="49328"/>
              <exon start="49226" stop="49186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301844" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51357" stop="51297"/>
              <exon start="50312" stop="49948"/>
              <exon start="49397" stop="49328"/>
              <exon start="49226" stop="49015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51356" stop="51297"/>
              <exon start="50312" stop="49948"/>
              <exon start="49397" stop="49328"/>
              <exon start="49226" stop="49138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50130" stop="49948"/>
              <exon start="49397" stop="49328"/>
              <exon start="49226" stop="48938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCTTATGATAGTTGGTGGTTTGGAATGAACCTTCATAGTTAAACATCATTTTTCAACCAGCCTTATTGCTTGTATTATCTTTCATTTGAAATTTGATGGTGGGATTTTTGTGCAGTTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCTTGAGCCAGAGCCTGAGAGAGAAACCTTCCCCAACTTATCCGTTCCGCCCACTTCCTTAAGGGGTCCATCTCAAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTGCTGCTACCGTCTGTAAGTTTTCCATCGTTAATGGCTACTAAAGAGTCTGATGCAAATCATAGTCAAGTTGGCGATTCTTGTTTCAACCAGACTGATGGTTTTATCCGAGAAAGAGGTTTTCTAGAGGTGTGTCGAAAGCTGAAAGAGCTCCAGCCATGGGCTGATGACACCTTGATCGCAGATGTCTTGGCTGGTGTAAATGATTTCAATAAGGCCTTGACATTGTTGGATGCAATGGTATCTCCTGATCATACATATGTTGCACATGACAACAGAACAACTCCAGAAGAAGCAGATACTCCCTACATACAAAACCTTAAAGACGTAGACACAGATACTAAAGGGGTCAAGTCTAGTAGTAAGAATTCTCTCATGAATATTAACAAGTTTGCTGCTAATAAAGGTGTGTCATTGACAGACAATGTGGATATGGATGAATTGAGCCATGCACTTGCCAAGTGTCTTCAGAGCAACAGTCAGGAACTAATAAATAACTGTGTTTCTCACGAGAACAAACTTCATTTTGATGGAGCAGTGGGGAGTATGAGCTTTGTACCGGTTGAGCCTGAGTGGGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAG : GTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAG : GTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGG : ATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTAGACCCAAGTTCCGACCACGATAAATACGTTCATATGTATATTTTGGGTCCCAATTTAGTGCATTTGTTTCTGTTGCTATCAACTTTGACCTAGAGATTTTGAGTCTTGAACTGGTCTTATAAAAACGACCAGAAACCTGTTGTGGTTATATACTGTTGAATATTTCTGTAATTGCATACCATCAAACATTGTATGTACTTTGCTGATTTCTCCACAGGTCCAAACTAACACTTGAAAGTATATTGGAG</gDNA_template>
            <first_frame> E  L  M  I  V  G  G  L  E  *  T  F  I  V  K  H  H  F  S  T  S  L  I  A  C  I  I  F  H  L  K  F  D  G  G  I  F  V  Q  F  T  L  S  V  K  L  S  L  F  *  *  S  G  A  K  T  *  T  *  I  K  E  T  L  I  K  L  *  P  R  R  G  G  G  V  A  *  N  D  L  S  A  F  N  V  N  L  R  W  L  L  L  R  V  *  Q  V  L  Y  I  R  R  C  L  G  G  G  L  R  L  L  V  G  L  H  L  T  S  M  R  D  *  S  N  K  I  L  S  Q  S  L  R  E  K  P  S  P  T  Y  P  F  R  P  L  P  *  G  V  H  L  K  A  S  Q  R  T  V  E  Q  L  *  R  S  L  F  H  P  C  C  Y  R  L  *  V  F  H  R  *  W  L  L  K  S  L  M  Q  I  I  V  K  L  A  I  L  V  S  T  R  L  M  V  L  S  E  K  E  V  F  *  R  C  V  E  S  *  K  S  S  S  H  G  L  M  T  P  *  S  Q  M  S  W  L  V  *  M  I  S  I  R  P  *  H  C  W  M  Q  W  Y  L  L  I  I  H  M  L  H  M  T  T  E  Q  L  Q  K  K  Q  I  L  P  T  Y  K  T  L  K  T  *  T  Q  I  L  K  G  S  S  L  V  V  R  I  L  S  *  I  L  T  S  L  L  L  I  K  V  C  H  *  Q  T  M  W  I  W  M  N  *  A  M  H  L  P  S  V  F  R  A  T  V  R  N  *  *  I  T  V  F  L  T  R  T  N  F  I  L  M  E  Q  W  G  V  *  A  L  Y  R  L  S  L  S  G  K  R  M  I  F  T  R  S  I  G  R  M  Q  *  R  *  R   : G  R  Q  P  D  I  L  R  L  P  V  R  P  I  S  E  E  T  T  Y  L  P  N  I  F  L  *  K  P  K  K  S  G  M  L  L  I  G  *  M  P  R  L  Q  K  K  F  *  L  P  A  T  V  R  M  I  N  G  H  W  T  C  M  V  F  M  Q  K  R  Q  F  K  P  Y  K  N  I  C  K  R  L  N  L  R  W  H  R  I  S  A  A  L  E  L  L  S  L  L  M  W  R  M  R  A  K  G  P  T  Y  *  I  S  S  G  Q  L  S  *  R  S  *  Q  :  V  K  V  F  I  A  G  D  K  L  H  F  Q  W  L  *  E  A  F  S  W  R  R   : D  I  V  M  R  R  Q  G  P  G  *  S  Q  L  D  P  S  S  D  H  D  K  Y  V  H  M  Y  I  L  G  P  N  L  V  H  L  F  L  L  L  S  T  L  T  *  R  F  *  V  L  N  W  S  Y  K  N  D  Q  K  P  V  V  V  I  Y  C  *  I  F  L  *  L  H  T  I  K  H  C  M  Y  F  A  D  F  S  T  G  P  N  *  H  L  K  V  Y  W   </first_frame>
            <second_frame>  S  L  *  *  L  V  V  W  N  E  P  S  *  L  N  I  I  F  Q  P  A  L  L  L  V  L  S  F  I  *  N  L  M  V  G  F  L  C  S  L  L  F  Q  *  S  C  H  C  F  N  N  P  E  P  K  L  K  L  E  L  R  R  H  *  L  N  Y  S  Q  E  E  V  V  V  W  L  E  M  I  *  V  L  S  M  S  T  *  D  G  C  F  Y  E  C  D  K  S  S  T  *  E  D  V  W  E  E  G  *  D  F  W  L  G  C  I  *  P  Q  *  E  T  E  A  T  K  S  *  A  R  A  *  E  R  N  L  P  Q  L  I  R  S  A  H  F  L  K  G  S  I  S  K  H  R  K  E  Q  W  S  N  S  R  E  A  F  F  I  L  A  A  T  V  C  K  F  S  I  V  N  G  Y  *  R  V  *  C  K  S  *  S  S  W  R  F  L  F  Q  P  D  *  W  F  Y  P  R  K  R  F  S  R  G  V  S  K  A  E  R  A  P  A  M  G  *  *  H  L  D  R  R  C  L  G  W  C  K  *  F  Q  *  G  L  D  I  V  G  C  N  G  I  S  *  S  Y  I  C  C  T  *  Q  Q  N  N  S  R  R  S  R  Y  S  L  H  T  K  P  *  R  R  R  H  R  Y  *  R  G  Q  V  *  *  *  E  F  S  H  E  Y  *  Q  V  C  C  *  *  R  C  V  I  D  R  Q  C  G  Y  G  *  I  E  P  C  T  C  Q  V  S  S  E  Q  Q  S  G  T  N  K  *  L  C  F  S  R  E  Q  T  S  F  *  W  S  S  G  E  Y  E  L  C  T  G  *  A  *  V  G  R  G  *  Y  L  L  D  P  S  E  G  C  S  E  D  D  E  :  V  G  S  P  T  F  *  G  C  Q  *  G  L  S  Q  R  R  P  L  I  C  P  T  F  F  S  K  S  P  R  R  V  G  C  C  *  *  A  K  C  P  G  C  K  R  N  F  D  C  L  Q  R  *  E  *  S  M  D  T  G  L  A  W  S  S  C  K  R  G  S  S  S  L  T  R  T  F  A  K  D  *  I  S  G  G  T  E  *  A  Q  L  W  S  C  C  L  F  *  C  G  E  *  E  Q  R  V  P  P  I  E  *  A  A  A  S  F  L  R  G  H  N  R :   *  R  Y  S  *  P  G  T  S  C  T  S  N  G  Y  K  K  L  S  R  G  E  G  :  I  S  L  *  G  D  K  A  R  G  D  H  S  *  T  Q  V  P  T  T  I  N  T  F  I  C  I  F  W  V  P  I  *  C  I  C  F  C  C  Y  Q  L  *  P  R  D  F  E  S  *  T  G  L  I  K  T  T  R  N  L  L  W  L  Y  T  V  E  Y  F  C  N  C  I  P  S  N  I  V  C  T  L  L  I  S  P  Q  V  Q  T  N  T  *  K  Y  I  G  </second_frame>
            <third_frame>   A  Y  D  S  W  W  F  G  M  N  L  H  S  *  T  S  F  F  N  Q  P  Y  C  L  Y  Y  L  S  F  E  I  *  W  W  D  F  C  A  V  Y  S  F  S  K  A  V  I  V  L  I  I  R  S  Q  N  L  N  L  N  *  G  D  T  N  *  I  I  A  K  K  R  W  W  C  G  L  K  *  F  K  C  F  Q  C  Q  L  K  M  A  A  S  T  S  V  T  S  P  L  H  K  K  M  S  G  R  R  A  K  T  S  G  W  A  A  F  D  L  N  E  R  L  K  Q  Q  N  L  E  P  E  P  E  R  E  T  F  P  N  L  S  V  P  P  T  S  L  R  G  P  S  Q  S  I  A  K  N  S  G  A  T  L  E  K  P  F  S  S  L  L  L  P  S  V  S  F  P  S  L  M  A  T  K  E  S  D  A  N  H  S  Q  V  G  D  S  C  F  N  Q  T  D  G  F  I  R  E  R  G  F  L  E  V  C  R  K  L  K  E  L  Q  P  W  A  D  D  T  L  I  A  D  V  L  A  G  V  N  D  F  N  K  A  L  T  L  L  D  A  M  V  S  P  D  H  T  Y  V  A  H  D  N  R  T  T  P  E  E  A  D  T  P  Y  I  Q  N  L  K  D  V  D  T  D  T  K  G  V  K  S  S  S  K  N  S  L  M  N  I  N  K  F  A  A  N  K  G  V  S  L  T  D  N  V  D  M  D  E  L  S  H  A  L  A  K  C  L  Q  S  N  S  Q  E  L  I  N  N  C  V  S  H  E  N  K  L  H  F  D  G  A  V  G  S  M  S  F  V  P  V  E  P  E  W  E  E  D  D  I  Y  S  I  H  R  K  D  A  V  K  M  T  R :   S  A  A  R  H  S  K  A  A  S  E  A  Y  L  R  G  D  H  L  S  A  Q  H  F  S  L  K  A  Q  E  E  W  D  A  A  N  R  L  N  A  Q  A  A  K  E  I  L  T  A  C  N  G  K  N  D  Q  W  T  L  D  L  H  G  L  H  A  K  E  A  V  Q  A  L  Q  E  H  L  Q  K  I  E  S  Q  V  A  Q  N  K  R  S  F  G  A  A  V  S  F  D  V  E  N  E  S  K  G  S  H  L  L  N  K  Q  R  P  A  F  L  E  V  I  T   : G  K  G  I  H  S  R  G  Q  A  A  L  P  M  A  I  R  S  F  L  V  E  K  G :   Y  R  Y  E  E  T  R  P  G  V  I  T  V  R  P  K  F  R  P  R  *  I  R  S  Y  V  Y  F  G  S  Q  F  S  A  F  V  S  V  A  I  N  F  D  L  E  I  L  S  L  E  L  V  L  *  K  R  P  E  T  C  C  G  Y  I  L  L  N  I  S  V  I  A  Y  H  Q  T  L  Y  V  L  C  *  F  L  H  R  S  K  L  T  L  E  S  I  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52189" stop="51297"/>
                    <exon start="50312" stop="49948"/>
                    <exon start="49397" stop="49328"/>
                    <exon start="49226" stop="49163"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1389</number_coding_nucleotides>
                  <number_encoded_amino_acids>463</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKCFQCQLKMAASTSVTSPLHKKMSGRRAKTSGWAAFDLNERLKQQNLEPEPERETFPNLSVPPTSLRGPSQSIAKNSGATLEKPFSSLLLPSVSFPSLMATKESDANHSQVGDSCFNQTDGFIRERGFLEVCRKLKELQPWADDTLIADVLAGVNDFNKALTLLDAMVSPDHTYVAHDNRTTPEEADTPYIQNLKDVDTDTKGVKSSSKNSLMNINKFAANKGVSLTDNVDMDELSHALAKCLQSNSQELINNCVSHENKLHFDGAVGSMSFVPVEPEWEEDDIYSIHRKDAVKMTRSAARHSKAASEAYLRGDHLSAQHFSLKAQEEWDAANRLNAQAAKEILTACNGKNDQWTLDLHGLHAKEAVQALQEHLQKIESQVAQNKRSFGAAVSFDVENESKGSHLLNKQRPAFLEVITGKGIHSRGQAALPMAIRSFLVEKGYRYEETRPGVITVRPKFRPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="54454" e_stop="53166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54454" e_stop="53166" e_length="1289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54454" stop="54186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54410" stop="53843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54100" stop="53499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54100" stop="53620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54077" stop="53514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53784" stop="53166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273533" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTCCTTTTTTTCAATTTCTCATTTCTTCTGGACGATCGCCGGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAGGTATATTGACGATTTTGCCCTTGATTCCTGCTAACATGTGTTTACGAAGAATTGTTTTTCTTAAACTGAAGGTTGGATTTTTACTGCTTTATCAAAAAAAAAACAAAGGAAAAATTGGAGTTTAGTTGTTTCTGAATGGTATAAAGGTTTTGTATGTTGTAGGAATTCGTTTATTTTATAACTGTGTTGTTTGGGCCATCCTGTGCACACCTAGACTACGGATACCTCCATCGACAACATACACCATAAGTAACCTAGAACAAATAGAAAGAAATCACCTTGTGTTTAGTTTCTGAAACCTTGTCGATCTCAATGGAGTCCTCTAAGTCACACCCTTAGGTTAAGCTTTAAGAAATTATAAGTTTAGTGAAGCTGATAACTATTGGACATTAAGGCTTTGATTAGGAACATATATTACTCTCTCTGTTTACTTTTACTTGTGTGCTTTCAAATAATTGTTTTTCACTTTAATTTGGCACTTTTAACCTATATTGCTTGGACTCTCCAAAAATTGCAGCCGCACCCGTGTTGGATCCTCTAAAAAGAGGATCTGACATGCACCCAGTAAAATGTTTGAAGAGGCCGAGCAACATAGCTTTTAACATATTAAGAAAAGACATTCCCTTGGTGTTAATCACTTATTCCCCAAATTATTTTTCAAGACCTTATACTAAACATCAATTAAGATGGGCATTATGGTAAAGTATTCATATTAATCATTGTTTCTTAAGAGACGTGTAAAGTCTTAAAAGTGGATAACTAAAAGTGAATGAAGGGAATACTTGATATTTTCCTAAAGTTAAGCTAAAGTTTGGATTCTTACTGCTAAAAAAAAGGTTGGATGTTTACTGTTTCTGAATGATTGCTAAGGAACTGAAGTCCTTAGAGATTTGAAATCTTACTGTAGGTGGTTATTGAAGGACATGAAAGTTTTGAACAGGAATACAAAATTGATTGTAGTTCTCCTAAAAGTGAGCTAAAGGTTGGATTTTTACTACTTTCAAAAAAAAAA</gDNA_template>
            <first_frame> F  L  P  F  F  Q  F  L  I  S  S  G  R  S  P  E  T  Q  S  E  N  S  P  T  V  Y  G  L  Q  K  Q  I  P  I  S  I  A  V  R  R  L  R  R  R  Q  Q  Q  I  S  D  S  S  V  F  I  S  A  L  *  S  F  I  Y  S  F  H  P  V  D  T  I  P  P  V  Q  F  F  L  I  Y  L  T  I  F  L  Y  A  K  R  T  P  K  G  I  L  T  I  L  P  L  I  P  A  N  M  C  L  R  R  I  V  F  L  K  L  K  V  G  F  L  L  L  Y  Q  K  K  N  K  G  K  I  G  V  *  L  F  L  N  G  I  K  V  L  Y  V  V  G  I  R  L  F  Y  N  C  V  V  W  A  I  L  C  T  P  R  L  R  I  P  P  S  T  T  Y  T  I  S  N  L  E  Q  I  E  R  N  H  L  V  F  S  F  *  N  L  V  D  L  N  G  V  L  *  V  T  P  L  G  *  A  L  R  N  Y  K  F  S  E  A  D  N  Y  W  T  L  R  L  *  L  G  T  Y  I  T  L  S  V  Y  F  Y  L  C  A  F  K  *  L  F  F  T  L  I  W  H  F  *  P  I  L  L  G  L  S  K  N  C  S  R  T  R  V  G  S  S  K  K  R  I  *  H  A  P  S  K  M  F  E  E  A  E  Q  H  S  F  *  H  I  K  K  R  H  S  L  G  V  N  H  L  F  P  K  L  F  F  K  T  L  Y  *  T  S  I  K  M  G  I  M  V  K  Y  S  Y  *  S  L  F  L  K  R  R  V  K  S  *  K  W  I  T  K  S  E  *  R  E  Y  L  I  F  S  *  S  *  A  K  V  W  I  L  T  A  K  K  K  V  G  C  L  L  F  L  N  D  C  *  G  T  E  V  L  R  D  L  K  S  Y  C  R  W  L  L  K  D  M  K  V  L  N  R  N  T  K  L  I  V  V  L  L  K  V  S  *  R  L  D  F  Y  Y  F  Q  K  K   </first_frame>
            <second_frame>  F  F  L  F  F  N  F  S  F  L  L  D  D  R  R  R  L  N  R  K  I  H  Q  L  F  M  D  C  R  S  R  S  L  S  A  S  P  S  A  V  S  A  A  V  N  N  K  Y  P  I  L  Q  F  S  S  Q  L  S  N  P  S  Y  T  P  F  T  P  W  I  R  Y  L  R  F  S  F  S  *  F  I  L  Q  F  F  Y  M  R  R  E  L  P  K  V  Y  *  R  F  C  P  *  F  L  L  T  C  V  Y  E  E  L  F  F  L  N  *  R  L  D  F  Y  C  F  I  K  K  K  T  K  E  K  L  E  F  S  C  F  *  M  V  *  R  F  C  M  L  *  E  F  V  Y  F  I  T  V  L  F  G  P  S  C  A  H  L  D  Y  G  Y  L  H  R  Q  H  T  P  *  V  T  *  N  K  *  K  E  I  T  L  C  L  V  S  E  T  L  S  I  S  M  E  S  S  K  S  H  P  *  V  K  L  *  E  I  I  S  L  V  K  L  I  T  I  G  H  *  G  F  D  *  E  H  I  L  L  S  L  F  T  F  T  C  V  L  S  N  N  C  F  S  L  *  F  G  T  F  N  L  Y  C  L  D  S  P  K  I  A  A  A  P  V  L  D  P  L  K  R  G  S  D  M  H  P  V  K  C  L  K  R  P  S  N  I  A  F  N  I  L  R  K  D  I  P  L  V  L  I  T  Y  S  P  N  Y  F  S  R  P  Y  T  K  H  Q  L  R  W  A  L  W  *  S  I  H  I  N  H  C  F  L  R  D  V  *  S  L  K  S  G  *  L  K  V  N  E  G  N  T  *  Y  F  P  K  V  K  L  K  F  G  F  L  L  L  K  K  R  L  D  V  Y  C  F  *  M  I  A  K  E  L  K  S  L  E  I  *  N  L  T  V  G  G  Y  *  R  T  *  K  F  *  T  G  I  Q  N  *  L  *  F  S  *  K  *  A  K  G  W  I  F  T  T  F  K  K  K  </second_frame>
            <third_frame>   S  S  F  F  S  I  S  H  F  F  W  T  I  A  G  D  S  I  G  K  F  T  N  C  L  W  I  A  E  A  D  P  Y  Q  H  R  R  P  P  S  P  P  P  S  T  T  N  I  R  F  F  S  F  H  L  S  S  L  I  L  H  I  L  L  S  P  R  G  Y  D  T  S  G  S  V  F  P  D  L  S  Y  N  F  F  I  C  E  E  N  S  Q  R  Y  I  D  D  F  A  L  D  S  C  *  H  V  F  T  K  N  C  F  S  *  T  E  G  W  I  F  T  A  L  S  K  K  K  Q  R  K  N  W  S  L  V  V  S  E  W  Y  K  G  F  V  C  C  R  N  S  F  I  L  *  L  C  C  L  G  H  P  V  H  T  *  T  T  D  T  S  I  D  N  I  H  H  K  *  P  R  T  N  R  K  K  S  P  C  V  *  F  L  K  P  C  R  S  Q  W  S  P  L  S  H  T  L  R  L  S  F  K  K  L  *  V  *  *  S  *  *  L  L  D  I  K  A  L  I  R  N  I  Y  Y  S  L  C  L  L  L  L  V  C  F  Q  I  I  V  F  H  F  N  L  A  L  L  T  Y  I  A  W  T  L  Q  K  L  Q  P  H  P  C  W  I  L  *  K  E  D  L  T  C  T  Q  *  N  V  *  R  G  R  A  T  *  L  L  T  Y  *  E  K  T  F  P  W  C  *  S  L  I  P  Q  I  I  F  Q  D  L  I  L  N  I  N  *  D  G  H  Y  G  K  V  F  I  L  I  I  V  S  *  E  T  C  K  V  L  K  V  D  N  *  K  *  M  K  G  I  L  D  I  F  L  K  L  S  *  S  L  D  S  Y  C  *  K  K  G  W  M  F  T  V  S  E  *  L  L  R  N  *  S  P  *  R  F  E  I  L  L  *  V  V  I  E  G  H  E  S  F  E  Q  E  Y  K  I  D  C  S  S  P  K  S  E  L  K  V  G  F  L  L  L  S  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54452" stop="54144"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFFSISHFFWTIAGDSIGKFTNCLWIAEADPYQHRRPPSPPPSTTNIRFFSFHLSSLILHILLSPRGYDTSGSVFPDLSYNFFICEENSQRYIDDFALDSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54453" stop="54220"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLFFNFSFLLDDRRRLNRKIHQLFMDCRSRSLSASPSAVSAAVNNKYPILQFSSQLSNPSYTPFTPWIRYLRFSFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53706" stop="53476"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGTFNLYCLDSPKIAAAPVLDPLKRGSDMHPVKCLKRPSNIAFNILRKDIPLVLITYSPNYFSRPYTKHQLRWALW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54277" stop="54053"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFIYSFHPVDTIPPVQFFLIYLTIFLYAKRTPKGILTILPLIPANMCLRRIVFLKLKVGFLLLYQKKNKGKIGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="52960" e_stop="52445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="52960" e_stop="52445" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52960" stop="52445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52847" stop="52445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTAAACTTTACTGAAGGTGATTATTGTACGGCATCAAGATTTTGAACAGAAATACATGTTAATTATGGTTTTCCTAAATTTTTAGCTTAACGTTGGATTTTCTGCTTCTGAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTTTTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACAAGTGGAGAGGTAGATACCATACAATGTTTTAATTGGATCGGATTACTCAAATTAATTTGCATCGTGGTAACTGATCAAAAGGTCACAAGTGGAAGTCCTAGTGGTTGAGGTGGGGACTAACTACCTAGAGATTTCAAGTTTTAATCCTAGCTTGAACACTTGATGAGTTCACCTGATCTAACCTTGGTGAGCATGATCACATCAAAAACCTATGCTTGTCGGTTGGACAGGCTGTTTGTTGAATTAATCATGTGGGCACAAGCTAGCCGCGACACCATAGATATTAAAAAGGAAAAAAAAAAG</gDNA_template>
            <first_frame> K  I  K  L  Y  *  R  *  L  L  Y  G  I  K  I  L  N  R  N  T  C  *  L  W  F  S  *  I  F  S  L  T  L  D  F  L  L  L  N  A  A  I  S  L  K  M  *  K  V  H  V  F  T  K  I  I  V  G  D  K  L  C  K  N  C  F  L  L  L  C  T  S  G  E  V  D  T  I  Q  C  F  N  W  I  G  L  L  K  L  I  C  I  V  V  T  D  Q  K  V  T  S  G  S  P  S  G  *  G  G  D  *  L  P  R  D  F  K  F  *  S  *  L  E  H  L  M  S  S  P  D  L  T  L  V  S  M  I  T  S  K  T  Y  A  C  R  L  D  R  L  F  V  E  L  I  M  W  A  Q  A  S  R  D  T  I  D  I  K  K  E  K  K  K </first_frame>
            <second_frame>  K  L  N  F  T  E  G  D  Y  C  T  A  S  R  F  *  T  E  I  H  V  N  Y  G  F  P  K  F  L  A  *  R  W  I  F  C  F  *  M  L  Q  *  V  *  K  C  R  K  F  M  F  L  L  K  L  L  *  E  I  S  F  V  K  I  V  F  Y  F  Y  V  Q  V  E  R  *  I  P  Y  N  V  L  I  G  S  D  Y  S  N  *  F  A  S  W  *  L  I  K  R  S  Q  V  E  V  L  V  V  E  V  G  T  N  Y  L  E  I  S  S  F  N  P  S  L  N  T  *  *  V  H  L  I  *  P  W  *  A  *  S  H  Q  K  P  M  L  V  G  W  T  G  C  L  L  N  *  S  C  G  H  K  L  A  A  T  P  *  I  L  K  R  K  K  K   </second_frame>
            <third_frame>   N  *  T  L  L  K  V  I  I  V  R  H  Q  D  F  E  Q  K  Y  M  L  I  M  V  F  L  N  F  *  L  N  V  G  F  S  A  S  E  C  C  N  K  F  E  N  V  E  S  S  C  F  Y  *  N  Y  C  R  R  *  A  L  *  K  L  F  F  T  F  M  Y  K  W  R  G  R  Y  H  T  M  F  *  L  D  R  I  T  Q  I  N  L  H  R  G  N  *  S  K  G  H  K  W  K  S  *  W  L  R  W  G  L  T  T  *  R  F  Q  V  L  I  L  A  *  T  L  D  E  F  T  *  S  N  L  G  E  H  D  H  I  K  N  L  C  L  S  V  G  Q  A  V  C  *  I  N  H  V  G  T  S  *  P  R  H  H  R  Y  *  K  G  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0251J13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="54454" e_stop="54178"/>
            <exon e_start="53081" e_stop="53076"/>
            <exon e_start="52308" e_stop="52187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.865" acc_prob="0.975" e_score="0.993"/>
          <exon-intron don_prob="0.000" acc_prob="0.975" e_score="0.667"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="54454" e_stop="54178" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.865" acc_prob="0.975">
            <gDNA_intron_boundary i_start="54177" i_stop="53082" i_length="1096"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="53081" e_stop="53076" e_length="6"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="53075" i_stop="52309" i_length="767"/>
          </intron>
          <exon e_serial="3" e_score="0.943">
            <gDNA_exon_boundary e_start="52308" e_stop="52187" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54454" stop="54186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54410" stop="54178"/>
              <exon start="53081" stop="53076"/>
              <exon start="52308" stop="52187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364262" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTCCTTTTTTTCAATTTCTCATTTCTTCTGGACGATCGCCGGAGACTCAATCGGAAAATTCACCAACTGTTTATGGATTGCAGAAGCAGATCCCTATCAGCATCGCCGTCCGCCGTCTCCGCCGCCGTCAACAACAAATATCCGATTCTTCAGTTTTCATCTCAGCTCTCTAATCCTTCATATACTCCTTTCACCCCGTGGATACGATACCTCCGGTTCAGTTTTTCCTGATTTATCTTACAATTTTTTTATATGCGAAGAGAACTCCCAAAG : GTGATT : TTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTTGAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATGATTT</gDNA_template>
            <first_frame> F  L  P  F  F  Q  F  L  I  S  S  G  R  S  P  E  T  Q  S  E  N  S  P  T  V  Y  G  L  Q  K  Q  I  P  I  S  I  A  V  R  R  L  R  R  R  Q  Q  Q  I  S  D  S  S  V  F  I  S  A  L  *  S  F  I  Y  S  F  H  P  V  D  T  I  P  P  V  Q  F  F  L  I  Y  L  T  I  F  L  Y  A  K  R  T  P  K   : G  D   : F  Y  S  F  S  K  A  V  I  V  L  I  I  R  S  Q  N  L  N  L  N  *  G  D  T  N  *  I  I  A  K  K  R  W  W  C  G  L  K  *  F </first_frame>
            <second_frame>  F  F  L  F  F  N  F  S  F  L  L  D  D  R  R  R  L  N  R  K  I  H  Q  L  F  M  D  C  R  S  R  S  L  S  A  S  P  S  A  V  S  A  A  V  N  N  K  Y  P  I  L  Q  F  S  S  Q  L  S  N  P  S  Y  T  P  F  T  P  W  I  R  Y  L  R  F  S  F  S  *  F  I  L  Q  F  F  Y  M  R  R  E  L  P  K  :  V  I  :  F  T  L  S  V  K  L  S  L  F  *  *  S  G  A  K  T  *  T  *  I  K  E  T  L  I  K  L  *  P  R  R  G  G  G  V  A  *  N  D   </second_frame>
            <third_frame>   S  S  F  F  S  I  S  H  F  F  W  T  I  A  G  D  S  I  G  K  F  T  N  C  L  W  I  A  E  A  D  P  Y  Q  H  R  R  P  P  S  P  P  P  S  T  T  N  I  R  F  F  S  F  H  L  S  S  L  I  L  H  I  L  L  S  P  R  G  Y  D  T  S  G  S  V  F  P  D  L  S  Y  N  F  F  I  C  E  E  N  S  Q  R :   *  F :   L  L  F  Q  *  S  C  H  C  F  N  N  P  E  P  K  L  K  L  E  L  R  R  H  *  L  N  Y  S  Q  E  E  V  V  V  W  L  E  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54452" stop="54178"/>
                    <exon start="53081" stop="53078"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFFSISHFFWTIAGDSIGKFTNCLWIAEADPYQHRRPPSPPPSTTNIRFFSFHLSSLILHILLSPRGYDTSGSVFPDLSYNFFICEENSQR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54453" stop="54220"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLFFNFSFLLDDRRRLNRKIHQLFMDCRSRSLSASPSAVSAAVNNKYPILQFSSQLSNPSYTPFTPWIRYLRFSFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="80046" PGL_stop="67360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80046" e_stop="79713"/>
            <exon e_start="78275" e_stop="78268"/>
            <exon e_start="75451" e_stop="75276"/>
            <exon e_start="73522" e_stop="73462"/>
            <exon e_start="72241" e_stop="72143"/>
            <exon e_start="71301" e_stop="71207"/>
            <exon e_start="70494" e_stop="70381"/>
            <exon e_start="69402" e_stop="69335"/>
            <exon e_start="68391" e_stop="68281"/>
            <exon e_start="68038" e_stop="67804"/>
            <exon e_start="67612" e_stop="67360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.704" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.879" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80046" e_stop="79713" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79712" i_stop="78276" i_length="1437"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78275" e_stop="78268" e_length="8"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78267" i_stop="75452" i_length="2816"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75451" e_stop="75276" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75275" i_stop="73523" i_length="1753"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73522" e_stop="73462" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.909">
            <gDNA_intron_boundary i_start="73461" i_stop="72242" i_length="1220"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72241" e_stop="72143" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.704" acc_prob="0.992">
            <gDNA_intron_boundary i_start="72142" i_stop="71302" i_length="841"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71301" e_stop="71207" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.990">
            <gDNA_intron_boundary i_start="71206" i_stop="70495" i_length="712"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70494" e_stop="70381" e_length="114"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.975">
            <gDNA_intron_boundary i_start="70380" i_stop="69403" i_length="978"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69402" e_stop="69335" e_length="68"/>
          </exon>
          <intron i_serial="8" don_prob="0.879" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69334" i_stop="68392" i_length="943"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="68391" e_stop="68281" e_length="111"/>
          </exon>
          <intron i_serial="9" don_prob="0.988" acc_prob="0.992">
            <gDNA_intron_boundary i_start="68280" i_stop="68039" i_length="242"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="68038" e_stop="67804" e_length="235"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.987">
            <gDNA_intron_boundary i_start="67803" i_stop="67613" i_length="191"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67612" e_stop="67360" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80046" stop="79713"/>
              <exon start="78275" stop="78268"/>
              <exon start="75451" stop="75276"/>
              <exon start="73522" stop="73462"/>
              <exon start="72241" stop="72156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80046" stop="79713"/>
              <exon start="78275" stop="78268"/>
              <exon start="75451" stop="75276"/>
              <exon start="73522" stop="73468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79831" stop="79713"/>
              <exon start="78275" stop="78268"/>
              <exon start="75451" stop="75276"/>
              <exon start="73522" stop="73462"/>
              <exon start="72241" stop="72143"/>
              <exon start="71301" stop="71207"/>
              <exon start="70494" stop="70433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73487" stop="73462"/>
              <exon start="72241" stop="72143"/>
              <exon start="71301" stop="71207"/>
              <exon start="70494" stop="70381"/>
              <exon start="69402" stop="69335"/>
              <exon start="68391" stop="68281"/>
              <exon start="68038" stop="67804"/>
              <exon start="67612" stop="67491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70457" stop="70381"/>
              <exon start="69402" stop="69335"/>
              <exon start="68391" stop="68281"/>
              <exon start="68038" stop="67804"/>
              <exon start="67612" stop="67360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68284" stop="68281"/>
              <exon start="68038" stop="67804"/>
              <exon start="67612" stop="67366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68284" stop="68281"/>
              <exon start="68038" stop="67804"/>
              <exon start="67612" stop="67390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68283" stop="68281"/>
              <exon start="68038" stop="67804"/>
              <exon start="67612" stop="67371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATGTTCCTGGAAAAACAAACGAGCCGGAAAACTCAACAGTGGAGCAGAAGAAACAGAAAGATCATGATAACTGGAAAAATACTGACAGGGATGGAAGTGAGAGGAGAAAGGAAAGAGATACTGATTTGGAAGGAGAGAGGCCTGAGAAACGTGTCAGGTGTCATGATAAAGAACCAGAGGAAGGGGACCTGGATACTGAAGGAGGAGGAGAAAGGGAAAGAGAAGCTTTTAATTATGGAGTTCAGCAGCGCAAGAGAATGTCGCGGCCAAGAGGGAGCCCCATGGCCAATCGCGATCCTCGTTTTAGGTCGCACACTCATGAAAATGAAGG : ATCTCAAG : TGAAGCATGATGTATCTGCTGTCAATTACAGAGTTGGTGAGTGTATGCCAGAACTGATTAAATTATGGAAGGAATATGAATCATCCAAAGCAGATGAAGCATCTGATAGCTCTCCAAGTGATCCTACTCTAGAAATTAGGATTCCAGCTGAACACGTATCAGCTACAAATCGGCAG : GTGAGAGGTGGCCAACTATGGGGAACAGATATATACACCAATGACTCGGATCTTGTCGCAG : TTCTTATGCACACAGGTTACTGTCGTACAACTGCGTCTCCTCTTTTGCCTACTATTACGGAGTTACGTGCTACTATCAGGGTACTACCTCCACAAAATT : GCTACATATCTACTCTGAGGAACAATGTGCGATCACGTGCGTGGGGAGCTGCAGTTGGCTGCAGCTATCGTATTGAGCGGTGCTCTGTTGTGAAG : AAAGGAGGTGGAACAATCGATCTTGAACCTTGTCTAACACATTCCTCAACCTTGGAGCCTACTCTTGCTCCGGTGGCGGTAGAGCGCACTATGACCACTCGAGCTGCAGCTTCG : AATGCACTACGACAACAGAGGTTTGTACGTGAAGTGACAATTCAGTTCAACTTATGCAATGAGCCTTG : GCTCAAATACAGTATCAGTGTTGTTGCTGACAAGGGTCTAAAAAAGGCCCTTTTTACATCTTCACGCCTGAAGAAGGGAGAAGTTCTTTACTTGGAAACTCATTCTAAGAG : GTATGAGCTCTGTTTTAGTGGTGAAAAGATGGTTAAGGCTACAACTTCTCTGATGCATGAAATGGATGTTGACAAACCTCAAAGTCACAATTTACACATGGCAAACGGAGAAAAAAATGGAGTGAATGGTGAGAATACGATGGTAGATATGTTCCGACTGTCTCGTTGTAAGAAGCCCCTGCCTCAGAAACTAATGCAATCAGTTGGAATTCCTTTGCCCCTTGAACATGTTGAG : GTTTTGGAGGAGAATCTGGAGTGGGAAAACATTCAATGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAATATCCTCTTACTAGAGCGCATTTTCTTTCCCCAAATTAGGCAATGCTTTGTAATAGATACAGTTTATTCTATAAGACAAAGATGTATTGGGATTTATACTGATTAGAATGATAAATTGTGGAACTCATGAACAATGTTGTTTTGTGAACATTGTGCATATGTTGATTTCTTCTTCCAGCTT</gDNA_template>
            <first_frame> L  M  F  L  E  K  Q  T  S  R  K  T  Q  Q  W  S  R  R  N  R  K  I  M  I  T  G  K  I  L  T  G  M  E  V  R  G  E  R  K  E  I  L  I  W  K  E  R  G  L  R  N  V  S  G  V  M  I  K  N  Q  R  K  G  T  W  I  L  K  E  E  E  K  G  K  E  K  L  L  I  M  E  F  S  S  A  R  E  C  R  G  Q  E  G  A  P  W  P  I  A  I  L  V  L  G  R  T  L  M  K  M  K   : D  L  K  :  *  S  M  M  Y  L  L  S  I  T  E  L  V  S  V  C  Q  N  *  L  N  Y  G  R  N  M  N  H  P  K  Q  M  K  H  L  I  A  L  Q  V  I  L  L  *  K  L  G  F  Q  L  N  T  Y  Q  L  Q  I  G  R :   *  E  V  A  N  Y  G  E  Q  I  Y  T  P  M  T  R  I  L  S  Q  :  F  L  C  T  Q  V  T  V  V  Q  L  R  L  L  F  C  L  L  L  R  S  Y  V  L  L  S  G  Y  Y  L  H  K  I  :  A  T  Y  L  L  *  G  T  M  C  D  H  V  R  G  E  L  Q  L  A  A  A  I  V  L  S  G  A  L  L  *  R :   K  E  V  E  Q  S  I  L  N  L  V  *  H  I  P  Q  P  W  S  L  L  L  L  R  W  R  *  S  A  L  *  P  L  E  L  Q  L  R :   M  H  Y  D  N  R  G  L  Y  V  K  *  Q  F  S  S  T  Y  A  M  S  L   : G  S  N  T  V  S  V  L  L  L  T  R  V  *  K  R  P  F  L  H  L  H  A  *  R  R  E  K  F  F  T  W  K  L  I  L  R   : G  M  S  S  V  L  V  V  K  R  W  L  R  L  Q  L  L  *  C  M  K  W  M  L  T  N  L  K  V  T  I  Y  T  W  Q  T  E  K  K  M  E  *  M  V  R  I  R  W  *  I  C  S  D  C  L  V  V  R  S  P  C  L  R  N  *  C  N  Q  L  E  F  L  C  P  L  N  M  L  R :   F  W  R  R  I  W  S  G  K  T  F  N  G  H  K  L  V  F  G  L  L  E  K  N  I  L  L  L  E  R  I  F  F  P  Q  I  R  Q  C  F  V  I  D  T  V  Y  S  I  R  Q  R  C  I  G  I  Y  T  D  *  N  D  K  L  W  N  S  *  T  M  L  F  C  E  H  C  A  Y  V  D  F  F  F  Q  L </first_frame>
            <second_frame>  *  C  S  W  K  N  K  R  A  G  K  L  N  S  G  A  E  E  T  E  R  S  *  *  L  E  K  Y  *  Q  G  W  K  *  E  E  K  G  K  R  Y  *  F  G  R  R  E  A  *  E  T  C  Q  V  S  *  *  R  T  R  G  R  G  P  G  Y  *  R  R  R  R  K  G  K  R  S  F  *  L  W  S  S  A  A  Q  E  N  V  A  A  K  R  E  P  H  G  Q  S  R  S  S  F  *  V  A  H  S  *  K  *  R  :  I  S  S :   E  A  *  C  I  C  C  Q  L  Q  S  W  *  V  Y  A  R  T  D  *  I  M  E  G  I  *  I  I  Q  S  R  *  S  I  *  *  L  S  K  *  S  Y  S  R  N  *  D  S  S  *  T  R  I  S  Y  K  S  A   : G  E  R  W  P  T  M  G  N  R  Y  I  H  Q  *  L  G  S  C  R  S :   S  Y  A  H  R  L  L  S  Y  N  C  V  S  S  F  A  Y  Y  Y  G  V  T  C  Y  Y  Q  G  T  T  S  T  K  L :   L  H  I  Y  S  E  E  Q  C  A  I  T  C  V  G  S  C  S  W  L  Q  L  S  Y  *  A  V  L  C  C  E   : E  R  R  W  N  N  R  S  *  T  L  S  N  T  F  L  N  L  G  A  Y  S  C  S  G  G  G  R  A  H  Y  D  H  S  S  C  S  F   : E  C  T  T  T  T  E  V  C  T  *  S  D  N  S  V  Q  L  M  Q  *  A  L  :  A  Q  I  Q  Y  Q  C  C  C  *  Q  G  S  K  K  G  P  F  Y  I  F  T  P  E  E  G  R  S  S  L  L  G  N  S  F  *  E  :  V  *  A  L  F  *  W  *  K  D  G  *  G  Y  N  F  S  D  A  *  N  G  C  *  Q  T  S  K  S  Q  F  T  H  G  K  R  R  K  K  W  S  E  W  *  E  Y  D  G  R  Y  V  P  T  V  S  L  *  E  A  P  A  S  E  T  N  A  I  S  W  N  S  F  A  P  *  T  C  *   : G  F  G  G  E  S  G  V  G  K  H  S  M  V  T  N  W  C  L  D  C  W  K  R  I  S  S  Y  *  S  A  F  S  F  P  K  L  G  N  A  L  *  *  I  Q  F  I  L  *  D  K  D  V  L  G  F  I  L  I  R  M  I  N  C  G  T  H  E  Q  C  C  F  V  N  I  V  H  M  L  I  S  S  S  S   </second_frame>
            <third_frame>   D  V  P  G  K  T  N  E  P  E  N  S  T  V  E  Q  K  K  Q  K  D  H  D  N  W  K  N  T  D  R  D  G  S  E  R  R  K  E  R  D  T  D  L  E  G  E  R  P  E  K  R  V  R  C  H  D  K  E  P  E  E  G  D  L  D  T  E  G  G  G  E  R  E  R  E  A  F  N  Y  G  V  Q  Q  R  K  R  M  S  R  P  R  G  S  P  M  A  N  R  D  P  R  F  R  S  H  T  H  E  N  E  G :   S  Q   : V  K  H  D  V  S  A  V  N  Y  R  V  G  E  C  M  P  E  L  I  K  L  W  K  E  Y  E  S  S  K  A  D  E  A  S  D  S  S  P  S  D  P  T  L  E  I  R  I  P  A  E  H  V  S  A  T  N  R  Q  :  V  R  G  G  Q  L  W  G  T  D  I  Y  T  N  D  S  D  L  V  A   : V  L  M  H  T  G  Y  C  R  T  T  A  S  P  L  L  P  T  I  T  E  L  R  A  T  I  R  V  L  P  P  Q  N   : C  Y  I  S  T  L  R  N  N  V  R  S  R  A  W  G  A  A  V  G  C  S  Y  R  I  E  R  C  S  V  V  K  :  K  G  G  G  T  I  D  L  E  P  C  L  T  H  S  S  T  L  E  P  T  L  A  P  V  A  V  E  R  T  M  T  T  R  A  A  A  S  :  N  A  L  R  Q  Q  R  F  V  R  E  V  T  I  Q  F  N  L  C  N  E  P  W :   L  K  Y  S  I  S  V  V  A  D  K  G  L  K  K  A  L  F  T  S  S  R  L  K  K  G  E  V  L  Y  L  E  T  H  S  K  R :   Y  E  L  C  F  S  G  E  K  M  V  K  A  T  T  S  L  M  H  E  M  D  V  D  K  P  Q  S  H  N  L  H  M  A  N  G  E  K  N  G  V  N  G  E  N  T  M  V  D  M  F  R  L  S  R  C  K  K  P  L  P  Q  K  L  M  Q  S  V  G  I  P  L  P  L  E  H  V  E  :  V  L  E  E  N  L  E  W  E  N  I  Q  W  S  Q  T  G  V  W  I  A  G  K  E  Y  P  L  T  R  A  H  F  L  S  P  N  *  A  M  L  C  N  R  Y  S  L  F  Y  K  T  K  M  Y  W  D  L  Y  *  L  E  *  *  I  V  E  L  M  N  N  V  V  L  *  T  L  C  I  C  *  F  L  L  P  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80044" stop="79713"/>
                    <exon start="78275" stop="78268"/>
                    <exon start="75451" stop="75276"/>
                    <exon start="73522" stop="73462"/>
                    <exon start="72241" stop="72143"/>
                    <exon start="71301" stop="71207"/>
                    <exon start="70494" stop="70381"/>
                    <exon start="69402" stop="69335"/>
                    <exon start="68391" stop="68281"/>
                    <exon start="68038" stop="67804"/>
                    <exon start="67612" stop="67502"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1407</number_coding_nucleotides>
                  <number_encoded_amino_acids>469</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVPGKTNEPENSTVEQKKQKDHDNWKNTDRDGSERRKERDTDLEGERPEKRVRCHDKEPEEGDLDTEGGGEREREAFNYGVQQRKRMSRPRGSPMANRDPRFRSHTHENEGSQVKHDVSAVNYRVGECMPELIKLWKEYESSKADEASDSSPSDPTLEIRIPAEHVSATNRQVRGGQLWGTDIYTNDSDLVAVLMHTGYCRTTASPLLPTITELRATIRVLPPQNCYISTLRNNVRSRAWGAAVGCSYRIERCSVVKKGGGTIDLEPCLTHSSTLEPTLAPVAVERTMTTRAAASNALRQQRFVREVTIQFNLCNEPWLKYSISVVADKGLKKALFTSSRLKKGEVLYLETHSKRYELCFSGEKMVKATTSLMHEMDVDKPQSHNLHMANGEKNGVNGENTMVDMFRLSRCKKPLPQKLMQSVGIPLPLEHVEVLEENLEWENIQWSQTGVWIAGKEYPLTRAHFLSPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="79914" PGL_stop="80159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79914" e_stop="80159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="79914" e_stop="80159" e_length="246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79914" stop="80159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAAATCAGTATCTCTTTCCTTTCTCCTCTCACTTCCATCCCTGTCAGTATTTTTCCAGTTATCATGATCTTTCTGTTTCTTCTGCTCCACTGTTGAGTTTTCCGGCTCGTTTGTTTTTCCAGGAACATCAATCACTTCTTTCTCACTCTGCAAAACCTCCCTCTCCACTCCATTCCACACTTCCCTCTTTGCATGGTCCTTTTCCCAGTCCTTTGGTCTGTCCTTATCCTTCGAAAGATCATTT</gDNA_template>
            <first_frame> S  K  S  V  S  L  S  F  L  L  S  L  P  S  L  S  V  F  F  Q  L  S  *  S  F  C  F  F  C  S  T  V  E  F  S  G  S  F  V  F  P  G  T  S  I  T  S  F  S  L  C  K  T  S  L  S  T  P  F  H  T  S  L  F  A  W  S  F  S  Q  S  F  G  L  S  L  S  F  E  R  S  F </first_frame>
            <second_frame>  P  N  Q  Y  L  F  P  F  S  S  H  F  H  P  C  Q  Y  F  S  S  Y  H  D  L  S  V  S  S  A  P  L  L  S  F  P  A  R  L  F  F  Q  E  H  Q  S  L  L  S  H  S  A  K  P  P  S  P  L  H  S  T  L  P  S  L  H  G  P  F  P  S  P  L  V  C  P  Y  P  S  K  D  H   </second_frame>
            <third_frame>   Q  I  S  I  S  F  L  S  P  L  T  S  I  P  V  S  I  F  P  V  I  M  I  F  L  F  L  L  L  H  C  *  V  F  R  L  V  C  F  S  R  N  I  N  H  F  F  L  T  L  Q  N  L  P  L  H  S  I  P  H  F  P  L  C  M  V  L  F  P  V  L  W  S  V  L  I  L  R  K  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79915" stop="80157"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNQYLFPFSSHFHPCQYFSSYHDLSVSSAPLLSFPARLFFQEHQSLLSHSAKPPSPLHSTLPSLHGPFPSPLVCPYPSKDH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="82195" PGL_stop="80810"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82195" e_stop="82155"/>
            <exon e_start="81097" e_stop="80810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.807" acc_prob="0.845" e_score="0.976"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="82195" e_stop="82155" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.807" acc_prob="0.845">
            <gDNA_intron_boundary i_start="82154" i_stop="81098" i_length="1057"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="81097" e_stop="80810" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82195" stop="82155"/>
              <exon start="81097" stop="80810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723825" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATTTTTTCGCTCCTTCTTTTGCTGCATCTTCGCCGCCG : GTTGTGGTTCTTTAGGTTCCTTAATTTATATGCTGAAAAAGCCAGAATATGAGTGGTACTCCGAACAAAAGACCTCACGAGGATGGTGGAAATGGTGGGAGTAGTAACCATAGTTACTCTTCTGCTCCAAAATACTCACATGATGACTCTGGTGCATTTCCCAAGGTGATGAGCTCAGGAACACCTGAATATCATGCCTCCTTTGATGTGGGCCAGAATGCTCGGATGCCGAAGATTCAACGGACTGAATCTTCACGAGATGCAGATAGAAGATCTCCTGTGCTTCCA</gDNA_template>
            <first_frame> *  I  F  S  L  L  L  L  L  H  L  R  R  R :   L  W  F  F  R  F  L  N  L  Y  A  E  K  A  R  I  *  V  V  L  R  T  K  D  L  T  R  M  V  E  M  V  G  V  V  T  I  V  T  L  L  L  Q  N  T  H  M  M  T  L  V  H  F  P  R  *  *  A  Q  E  H  L  N  I  M  P  P  L  M  W  A  R  M  L  G  C  R  R  F  N  G  L  N  L  H  E  M  Q  I  E  D  L  L  C  F   </first_frame>
            <second_frame>  E  F  F  R  S  F  F  C  C  I  F  A  A   : G  C  G  S  L  G  S  L  I  Y  M  L  K  K  P  E  Y  E  W  Y  S  E  Q  K  T  S  R  G  W  W  K  W  W  E  *  *  P  *  L  L  F  C  S  K  I  L  T  *  *  L  W  C  I  S  Q  G  D  E  L  R  N  T  *  I  S  C  L  L  *  C  G  P  E  C  S  D  A  E  D  S  T  D  *  I  F  T  R  C  R  *  K  I  S  C  A  S  </second_frame>
            <third_frame>   N  F  F  A  P  S  F  A  A  S  S  P  P  :  V  V  V  L  *  V  P  *  F  I  C  *  K  S  Q  N  M  S  G  T  P  N  K  R  P  H  E  D  G  G  N  G  G  S  S  N  H  S  Y  S  S  A  P  K  Y  S  H  D  D  S  G  A  F  P  K  V  M  S  S  G  T  P  E  Y  H  A  S  F  D  V  G  Q  N  A  R  M  P  K  I  Q  R  T  E  S  S  R  D  A  D  R  R  S  P  V  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81061" stop="80810"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSQNMSGTPNKRPHEDGGNGGSSNHSYSSAPKYSHDDSGAFPKVMSSGTPEYHASFDVGQNARMPKIQRTESSRDADRRSPVLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="87807" PGL_stop="90489"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87807" e_stop="87831"/>
            <exon e_start="87912" e_stop="88102"/>
            <exon e_start="88606" e_stop="88825"/>
            <exon e_start="89118" e_stop="89285"/>
            <exon e_start="89950" e_stop="90489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.913" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.578" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87807" e_stop="87831" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.913" acc_prob="0.873">
            <gDNA_intron_boundary i_start="87832" i_stop="87911" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87912" e_stop="88102" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.943">
            <gDNA_intron_boundary i_start="88103" i_stop="88605" i_length="503"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88606" e_stop="88825" e_length="220"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.927">
            <gDNA_intron_boundary i_start="88826" i_stop="89117" i_length="292"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89118" e_stop="89285" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.578">
            <gDNA_intron_boundary i_start="89286" i_stop="89949" i_length="664"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="89950" e_stop="90489" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87807" stop="87831"/>
              <exon start="87912" stop="88102"/>
              <exon start="88606" stop="88825"/>
              <exon start="89118" stop="89132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87818" stop="87831"/>
              <exon start="87912" stop="88102"/>
              <exon start="88606" stop="88825"/>
              <exon start="89118" stop="89285"/>
              <exon start="89950" stop="90156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87819" stop="87831"/>
              <exon start="87912" stop="88102"/>
              <exon start="88606" stop="88825"/>
              <exon start="89118" stop="89178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87957" stop="88102"/>
              <exon start="88606" stop="88825"/>
              <exon start="89118" stop="89285"/>
              <exon start="89950" stop="90269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88620" stop="88825"/>
              <exon start="89118" stop="89285"/>
              <exon start="89950" stop="89982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89173" stop="89285"/>
              <exon start="89950" stop="90489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATTTCCTGGCATTCAAGAATG : ATATTCAATTTTGGAATAAAAACAAGTCCATGGAAGGGCTATCTGCAAAATCAGTGGTCGTGAACTTTTTCTGCCAGTTTATTGTCTTCCTGTATTTGCTTGATAATGATACTTCATGGATGATACTTGCAAGTTCTGGTGTTGGTTGTTGCATTGAGTTCTGGAAAATAGGGAAGGCCATGCACATTGAG : ATTGACAGATCTGGTAGAATACCCATGTTGAGGTTCCGAGATCGGGAATCATATGCTGGAAATAAGACTAAAGAATATGATGATCTTGCCATGAAATATTTGTCTTATGTGCTGTTCTTCCTTGCCGTGTGCTTTGCCATATACTCTCTAATGTATGACCGCCACAAGAGTTGGTATTCATGGATCCTCTCATCCCTGACAAGCTGTGTTTATATGTTTG : GTTTTGTTATGATGTGTCCACAGTTGTTCATCAATTATAAACTGAAGTCTGTTGCTCATTTACCTTGGAGGCAAATGACCTACAAATTTCTTAATACCATCATTGATGATTTGTTTGCATTTGTGATAAAAATGCCAATGCTTCATCGCCTGTCTGTGTTCCGTGATG : ATCTTATATTTTTGATATACCTATATCAGAGATGGGTTTATCCAGTAGATAAGAAACGGGTGAATGAGTTTGGTTTTGCTGCGGAAGATGTGGATCAAGCTGCCAGTAGTTCAGATACTCCCGCACTTAAAGAAGACGAGAAGAAAACTAACTAATCTAAATCTCTCACTTAGGCTTCAGTACAACATACTTCTTGTTTTGGATGAACTCAACACCTGCAACGATGATGAGTTGCTTCAGGACGTTTAGTAATTTCTCAGGATCTTTGGTTACAATATTCAGATTCGAGTAACTTAATCGAGAATTGGAAATGACAACAGCGGCCTGAGAGGGGAACTCTGGTACTTTCAGATGTCAATCACCTCTTCGTCACGTTTCTTAAGTTCCCATTTCTCAAGTCTTTTTGTAGCTATAAATACCAGATTCTATCTACATAGGTTTTCTGGATTTCTTTTCTATTTTGTTCCTGTTAGAATCAAATGTTTGTGTGATAGTGAAACTACAATGACTGCTGTTAGAAATGCACCAATATGGTTTCTT</gDNA_template>
            <first_frame> F  D  F  L  A  F  K  N   : D  I  Q  F  W  N  K  N  K  S  M  E  G  L  S  A  K  S  V  V  V  N  F  F  C  Q  F  I  V  F  L  Y  L  L  D  N  D  T  S  W  M  I  L  A  S  S  G  V  G  C  C  I  E  F  W  K  I  G  K  A  M  H  I  E  :  I  D  R  S  G  R  I  P  M  L  R  F  R  D  R  E  S  Y  A  G  N  K  T  K  E  Y  D  D  L  A  M  K  Y  L  S  Y  V  L  F  F  L  A  V  C  F  A  I  Y  S  L  M  Y  D  R  H  K  S  W  Y  S  W  I  L  S  S  L  T  S  C  V  Y  M  F   : G  F  V  M  M  C  P  Q  L  F  I  N  Y  K  L  K  S  V  A  H  L  P  W  R  Q  M  T  Y  K  F  L  N  T  I  I  D  D  L  F  A  F  V  I  K  M  P  M  L  H  R  L  S  V  F  R  D   : D  L  I  F  L  I  Y  L  Y  Q  R  W  V  Y  P  V  D  K  K  R  V  N  E  F  G  F  A  A  E  D  V  D  Q  A  A  S  S  S  D  T  P  A  L  K  E  D  E  K  K  T  N  *  S  K  S  L  T  *  A  S  V  Q  H  T  S  C  F  G  *  T  Q  H  L  Q  R  *  *  V  A  S  G  R  L  V  I  S  Q  D  L  W  L  Q  Y  S  D  S  S  N  L  I  E  N  W  K  *  Q  Q  R  P  E  R  G  T  L  V  L  S  D  V  N  H  L  F  V  T  F  L  K  F  P  F  L  K  S  F  C  S  Y  K  Y  Q  I  L  S  T  *  V  F  W  I  S  F  L  F  C  S  C  *  N  Q  M  F  V  *  *  *  N  Y  N  D  C  C  *  K  C  T  N  M  V  S  </first_frame>
            <second_frame>  L  I  S  W  H  S  R  M  :  I  F  N  F  G  I  K  T  S  P  W  K  G  Y  L  Q  N  Q  W  S  *  T  F  S  A  S  L  L  S  S  C  I  C  L  I  M  I  L  H  G  *  Y  L  Q  V  L  V  L  V  V  A  L  S  S  G  K  *  G  R  P  C  T  L  R :   L  T  D  L  V  E  Y  P  C  *  G  S  E  I  G  N  H  M  L  E  I  R  L  K  N  M  M  I  L  P  *  N  I  C  L  M  C  C  S  S  L  P  C  A  L  P  Y  T  L  *  C  M  T  A  T  R  V  G  I  H  G  S  S  H  P  *  Q  A  V  F  I  C  L  :  V  L  L  *  C  V  H  S  C  S  S  I  I  N  *  S  L  L  L  I  Y  L  G  G  K  *  P  T  N  F  L  I  P  S  L  M  I  C  L  H  L  *  *  K  C  Q  C  F  I  A  C  L  C  S  V  M  :  I  L  Y  F  *  Y  T  Y  I  R  D  G  F  I  Q  *  I  R  N  G  *  M  S  L  V  L  L  R  K  M  W  I  K  L  P  V  V  Q  I  L  P  H  L  K  K  T  R  R  K  L  T  N  L  N  L  S  L  R  L  Q  Y  N  I  L  L  V  L  D  E  L  N  T  C  N  D  D  E  L  L  Q  D  V  *  *  F  L  R  I  F  G  Y  N  I  Q  I  R  V  T  *  S  R  I  G  N  D  N  S  G  L  R  G  E  L  W  Y  F  Q  M  S  I  T  S  S  S  R  F  L  S  S  H  F  S  S  L  F  V  A  I  N  T  R  F  Y  L  H  R  F  S  G  F  L  F  Y  F  V  P  V  R  I  K  C  L  C  D  S  E  T  T  M  T  A  V  R  N  A  P  I  W  F  L </second_frame>
            <third_frame>   *  F  P  G  I  Q  E  * :   Y  S  I  L  E  *  K  Q  V  H  G  R  A  I  C  K  I  S  G  R  E  L  F  L  P  V  Y  C  L  P  V  F  A  *  *  *  Y  F  M  D  D  T  C  K  F  W  C  W  L  L  H  *  V  L  E  N  R  E  G  H  A  H  *   : D  *  Q  I  W  *  N  T  H  V  E  V  P  R  S  G  I  I  C  W  K  *  D  *  R  I  *  *  S  C  H  E  I  F  V  L  C  A  V  L  P  C  R  V  L  C  H  I  L  S  N  V  *  P  P  Q  E  L  V  F  M  D  P  L  I  P  D  K  L  C  L  Y  V  W :   F  C  Y  D  V  S  T  V  V  H  Q  L  *  T  E  V  C  C  S  F  T  L  E  A  N  D  L  Q  I  S  *  Y  H  H  *  *  F  V  C  I  C  D  K  N  A  N  A  S  S  P  V  C  V  P  *  * :   S  Y  I  F  D  I  P  I  S  E  M  G  L  S  S  R  *  E  T  G  E  *  V  W  F  C  C  G  R  C  G  S  S  C  Q  *  F  R  Y  S  R  T  *  R  R  R  E  E  N  *  L  I  *  I  S  H  L  G  F  S  T  T  Y  F  L  F  W  M  N  S  T  P  A  T  M  M  S  C  F  R  T  F  S  N  F  S  G  S  L  V  T  I  F  R  F  E  *  L  N  R  E  L  E  M  T  T  A  A  *  E  G  N  S  G  T  F  R  C  Q  S  P  L  R  H  V  S  *  V  P  I  S  Q  V  F  L  *  L  *  I  P  D  S  I  Y  I  G  F  L  D  F  F  S  I  L  F  L  L  E  S  N  V  C  V  I  V  K  L  Q  *  L  L  L  E  M  H  Q  Y  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87807" stop="87831"/>
                    <exon start="87912" stop="88102"/>
                    <exon start="88606" stop="88825"/>
                    <exon start="89118" stop="89285"/>
                    <exon start="89950" stop="90104"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDFLAFKNDIQFWNKNKSMEGLSAKSVVVNFFCQFIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIEIDRSGRIPMLRFRDRESYAGNKTKEYDDLAMKYLSYVLFFLAVCFAIYSLMYDRHKSWYSWILSSLTSCVYMFGFVMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPMLHRLSVFRDDLIFLIYLYQRWVYPVDKKRVNEFGFAAEDVDQAASSSDTPALKEDEKKTN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90247" stop="90489"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRIGNDNSGLRGELWYFQMSITSSSRFLSSHFSSLFVAINTRFYLHRFSGFLFYFVPVRIKCLCDSETTMTAVRNAPIWFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="93620" PGL_stop="94140"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93620" e_stop="94140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93620" e_stop="94140" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93620" stop="94140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCCCCACCCCCACCCCCTCTGTATTTGTGGTATATAGTTTACATACATACATAAACGGTGACATTGTCTACTTGTTTCTTGAGAAAGTTCTTTTTTTTTCCATCCTCTCTTGTTGTATCTATGGCTGCACTGAATCCTAATGCAGAAGAGTTTAAACCAACTAATAATGAAAAAGAAGTAGTCCCTTTTAATCCACAAGGCAATGAACTTGTTGTATATCAGCCACCATTACTGCCATTTCATGTTTCACAGCCTCAATGTCATCACTTGGGTTATTTCTACTACTATCAACAAAATGTTCCCTTTTATTGGATTCACGATGATCTTTATCATCAACTTGAAAATACACCTCAAACTCAGTCATTTCTTGCAAAAGGTGAGATCTTTAGTGATGGGGTGAAGGAGAAGTGGGTGTGGGTTGAGAAAACTCATCAAGATCAGTCTTTTGTTGATAAAGATGAAATCTTTAGTGATGGGATGAACAAAAATTGGAAAAACAAGAAACCCTTTTTGCCACCT</gDNA_template>
            <first_frame> H  P  H  P  H  P  L  C  I  C  G  I  *  F  T  Y  I  H  K  R  *  H  C  L  L  V  S  *  E  S  S  F  F  F  H  P  L  L  L  Y  L  W  L  H  *  I  L  M  Q  K  S  L  N  Q  L  I  M  K  K  K  *  S  L  L  I  H  K  A  M  N  L  L  Y  I  S  H  H  Y  C  H  F  M  F  H  S  L  N  V  I  T  W  V  I  S  T  T  I  N  K  M  F  P  F  I  G  F  T  M  I  F  I  I  N  L  K  I  H  L  K  L  S  H  F  L  Q  K  V  R  S  L  V  M  G  *  R  R  S  G  C  G  L  R  K  L  I  K  I  S  L  L  L  I  K  M  K  S  L  V  M  G  *  T  K  I  G  K  T  R  N  P  F  C  H   </first_frame>
            <second_frame>  T  P  T  P  T  P  S  V  F  V  V  Y  S  L  H  T  Y  I  N  G  D  I  V  Y  L  F  L  E  K  V  L  F  F  S  I  L  S  C  C  I  Y  G  C  T  E  S  *  C  R  R  V  *  T  N  *  *  *  K  R  S  S  P  F  *  S  T  R  Q  *  T  C  C  I  S  A  T  I  T  A  I  S  C  F  T  A  S  M  S  S  L  G  L  F  L  L  L  S  T  K  C  S  L  L  L  D  S  R  *  S  L  S  S  T  *  K  Y  T  S  N  S  V  I  S  C  K  R  *  D  L  *  *  W  G  E  G  E  V  G  V  G  *  E  N  S  S  R  S  V  F  C  *  *  R  *  N  L  *  *  W  D  E  Q  K  L  E  K  Q  E  T  L  F  A  T  </second_frame>
            <third_frame>   P  P  P  P  P  P  L  Y  L  W  Y  I  V  Y  I  H  T  *  T  V  T  L  S  T  C  F  L  R  K  F  F  F  F  P  S  S  L  V  V  S  M  A  A  L  N  P  N  A  E  E  F  K  P  T  N  N  E  K  E  V  V  P  F  N  P  Q  G  N  E  L  V  V  Y  Q  P  P  L  L  P  F  H  V  S  Q  P  Q  C  H  H  L  G  Y  F  Y  Y  Y  Q  Q  N  V  P  F  Y  W  I  H  D  D  L  Y  H  Q  L  E  N  T  P  Q  T  Q  S  F  L  A  K  G  E  I  F  S  D  G  V  K  E  K  W  V  W  V  E  K  T  H  Q  D  Q  S  F  V  D  K  D  E  I  F  S  D  G  M  N  K  N  W  K  N  K  K  P  F  L  P  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93676" stop="94140"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVTLSTCFLRKFFFFPSSLVVSMAALNPNAEEFKPTNNEKEVVPFNPQGNELVVYQPPLLPFHVSQPQCHHLGYFYYYQQNVPFYWIHDDLYHQLENTPQTQSFLAKGEIFSDGVKEKWVWVEKTHQDQSFVDKDEIFSDGMNKNWKNKKPFLPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 191 chains have been computed
$ 
$ memory statistics:
$ 566512 bytes spliced alignments in total
$ 184 spliced alignments have been stored
$ 3078 bytes was the average size of a spliced alignment
$ 25656 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1973 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 199 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:29:52
-->
