<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-12 19:17:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="443" stop="1339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="743" g_stop="1065" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="743" e_stop="1065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACATAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATCGTATAATTCGTTAGCCTTTTTCTCTGCAATATTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAA-TTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="443" stop="1339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="743" g_stop="1034" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="743" e_stop="1034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACATAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATCGTATAATTCGTTAGCCTTTTTCTCTGCAATATTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAA-TTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="443" stop="1192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="743" g_stop="893" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="743" e_stop="893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACATAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATC</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="9517" stop="8710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9217" g_stop="9014" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="207" polyA_stop="219"/>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9217" e_stop="9014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCT-TTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTT</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTA-TTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="9949" stop="8872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9649" g_stop="9172" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9649" e_stop="9172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGACATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGAAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACGCTAGCCAGTCTTCATTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="9024" stop="9960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9324" g_stop="9660" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9324" e_stop="9660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAGTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTACATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="9950" stop="9115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9650" g_stop="9413" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9650" e_stop="9413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGACATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10620" stop="9195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10320" g_stop="9803" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9802" i_stop="9697" i_length="106">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9696" g_stop="9495" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="717" r_length="203" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10320" e_stop="9803"/>
          <exon e_start="9696" e_stop="9495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTACTTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAATCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAATTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCATTGATGAATTGATAGAAGGAGATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGGACGGGTGTCACGAACCGACACGTAGAATTAGTAGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACAAATAGAATTAGTGGGA-CGGGTGTCACGAACCGACACATAGAATTAGTGGATCGG-GTGTCACGAACCGACACGTAGATGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGC-TTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTA..........................................................................................................GGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10620" stop="9616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10320" g_stop="9916" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10320" e_stop="9916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTACTTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAATCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAATTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCATTGATGAATTGATAGAAGGAGATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGC-TTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739723" ref_strand="+" ref_description="SGN-E739723 [LC18CE02]">
      <seq>attttccattgaaaaactcaaaaacaagttttcgcagagagaagaatcagtcggaagaaggtggtgaatttgtcaaatcggagaaggagaatagtgaatctctgtatgtcagaggattactactactactattacagtaacaagtactacggcggttacggtgaacttaccaatccattacaatggcctcagctcaggaaaagacgacggtttctgccccttcacgaaatgcttccgccgcttctgaaactgaatggaatgctggtggaaccgtaactgatgtttctgatctttcatccaccagatcggctagttctgctgctccctctactttgacggctgtgattgattctattgatcgtccttctgcgcaaaatcagcagcctgctgtgaaaggactgcctaccttattgagggctcaaactcaccatcccttggaccccttaactgctgctgaaatttctgtggccgtggcaactgtcagggcagctggaagcactcccgaggtgagagatagcatgcgctttgttgaggttgttttggtggaaccagataagagtgtggttgctttagctgatgcgtacttctttcctccttttcaaccatctttattgccgagaacaaaaggtgggcctgtaattcccagtaaacttcctccaaggaaagctaaactgattgtttataacaagaaatcaaatgagaccagcatatggattgttgagctctcacaggttcatgctgtcactcgaggaggccaccaccgtggcaaagtcatttcatctaaagtcgtgcccgatatacacccaccaatgggacgccgttgaatatgctgaatgccaagccgtggtggaaggatttccctccttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="21397" stop="24605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21697" g_stop="22092" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22093" i_stop="23379" i_length="1287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23380" g_stop="23489" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="506" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23490" i_stop="23572" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23573" g_stop="23878" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="812" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23879" i_stop="24250" i_length="372">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24251" g_stop="24305" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="869" r_length="57" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E739723" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21697" e_stop="22092"/>
          <exon e_start="23380" e_stop="23489"/>
          <exon e_start="23573" e_stop="23878"/>
          <exon e_start="24251" e_stop="24305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCCATTGAAAAACTCAAAAACAAGTTTTCGCAGAGAGAAGAATCAGTCGGAAGAAGGTGGTGAATTTGTCAAATCGGAGAAGGAGAATAGTGAATCTCTGTATGTCAGAGGATTACTACTACTACTATTACAGTAACAAGTACTACGGCGGTTACGGTGAACTTACCAATCCATTACAATGGCCTCAGCTCAGGAAAAGACGACGGTTTCTGCCCCTTCACGAAATGCTTCCGCCGCTTCTGAAACTGAATGGAATGCTGGTGGAACCGTAACTGATGTTTCTGATCTTTCATCCACCAGATCGGCTAGTTCTGCTGCTCCCTCTACTTTGACGGCTGTGATTGATTCTATTGATCGTCCTTCTGCGCAAAATCAGCAGCCTGCTGTGAAAGGTATATTTGCTTTCATGATTTGAATTGTTATTTTGTTGCTCTGTATGTACATGCAGAACTGAAATATCTCGAATCTCGATCGTACCGCCTTGTTTTTGGCTATTTGTAGGATGACTGCTGCTGAAAAATGTTAATTCGTGTTGCTAATAGGTTAAACTTTGAGAGAAAGCGTGTGAAAATACGCATGACTTATCAAGCTAATTTTGTTTCTTTGTGCGGAGCCGTATTTTACTGGTTTACCTTCTTTCTTCTCTTCAGCATGTAAAACTTGCATCCTTCACCTTGATTGCCGATTCACCTTTTCTAAATTTGGAGAGAAGAGAAAAAGGGCATAAAAATGGTGAAAAATCGTGACTGATTTTGTTTATTTGTCACTTTTCCTTTTGTAAATCACAACTTTTACTCGTGTTTTGTTCCCAGGCAAGGGATATCCTCCTCTCGCCGTCTTCCTCTTTGTGTCAGTCACGAGTTCATTGTTTTTTCTTTTTTTGTTTGACAAGTTCTGGAAAAAGTTTTCTAAGCAATATTTTAGAAAAAAAAAGTGTGTAAAAGAAAAAAAAGAAAAACATTTTTCGACGGTTGAAATGTTCTTAAAGTTTGTGCTTTCCAGCTGGAAGATGACTTCGCTTTTCATTTCAGGAAGTGCTCAATACATTTTATTCCTCCAATAATTTTGAATTTCCCAGAGGTTCTCAGAGCCAAATGCCTAAAAAATCTTATGGTATTGTGGTTTATACATATGAAATTATTATTATTCTCATATGTTGCAGTGGAGTGTGTTTTAATGTAAGCCTTCTCCATTTTCCTTAAATCATTTAATCACAATTCAACAACATACTCAACAAGAGTGGTGTGGGAAGGGTAGGATGTACACATGCCTTACCCATGGGGTAGAGAGGTTGTTTCCAATAGACCTCACTCAATCACAACTTAAAGCACCAGACAATACTTTATACTGCTGAAGTCTAGTCTAGCACCACAGTGGTCAGGACTTGGAAGCCAAACCTATAGAACAAATTTGATTACATAATTACAAAATTTGAGAGTTGAAATAAATCCAAGGTTTGGCCAGAATGCACTGTAGATACTTGGGCAGTTCAGTCAGAGCTCGAGAGTTTAGATTTCCAAATAATCCACGGTTTGTCTGCAAAGTGTTTTAGGTATTTGGACCGTTAGTCTTAGTCATCAACTTGGAATGACAAGTTTATATCAAGAGTTGGTGTGTAAGGAACGTTGAGAAAATTTGTGGCTCATTCACGTACAATTGTTCAAATTTGATGTTGACAGGACTGCCTACCTTATTGAGGGCTCAAACTCACCATCCCTTGGACCCCTTAACTGCTGCTGAAATTTCTGTGGCCGTGGCAACTGTCAGGGCAGCTGGAAGCACTCCCGAGGTCATTATTATTCTATGCATATAGATGTTTTTTGTTTCTGATTCTCTTATTATCAATATTTATCAGTGTACTTCGATGTTTAGGTGAGAGATAGCATGCGCTTTGTTGAGGTTGTTTTGGTGGAACCAGATAAGAGTGTGGTTGCTTTAGCTGATGCGTACTTCTTTCCTCCTTTTCAACCATCTTTATTGCCGAGAACAAAAGGTGGGCCTGTAATTCCCAGTAAACTTCCTCCAAGGAAAGCTAAACTGATTGTTTATAACAAGAAATCAAATGAGACCAGCATATGGATTGTTGAGCTCTCACAGGTTCATGCTGTCACTCGAGGAGGCCACCACCGTGGCAAAGTCATTTCATCTAAAGTCGTGCCCGATATACAGCCACCAATGGTAGGTGCCTATGTGAACTTATAAGTTGAATATCATGTTGAAAGTTTTAAGAATTTTTGCTAGGTGATTTTACCAGGGTCTTGATTAACATTTCCACCAATTATTTCCACTAAATTGGGCCTGAGTGAATTATCAAGAGCTATAAGAAAGCTATTTTGATGTTTGGAGTACTTTTGTGCTTGTGTTTACTTGTGACTAAAAAGCCACAATAGTGGCTTCAGTAGTTGTGTGCTCTACATACTTGTGGCTTTTCTTTTTTCTCAGTGGTAGAAATGGAAGAAATACAGTTATAATGTTTGGTCACACAAGAATTAGAACCCTGTTTTACTGCTGCACCCAAAAGAGAAATGTCATCTGTTAACTGTATTGCAG-GACGCCGTTGAATATGCTGAATGCGAAGCCGTGGT-GAAGGATTTCCCTCCTTTTC</genome_strand>
        <mrna_strand>ATTTTCCATTGAAAAACTCAAAAACAAGTTTTCGCAGAGAGAAGAATCAGTCGGAAGAAGGTGGTGAATTTGTCAAATCGGAGAAGGAGAATAGTGAATCTCTGTATGTCAGAGGATTACTACTACTACTATTACAGTAACAAGTACTACGGCGGTTACGGTGAACTTACCAATCCATTACAATGGCCTCAGCTCAGGAAAAGACGACGGTTTCTGCCCCTTCACGAAATGCTTCCGCCGCTTCTGAAACTGAATGGAATGCTGGTGGAACCGTAACTGATGTTTCTGATCTTTCATCCACCAGATCGGCTAGTTCTGCTGCTCCCTCTACTTTGACGGCTGTGATTGATTCTATTGATCGTCCTTCTGCGCAAAATCAGCAGCCTGCTGTGAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGCCTACCTTATTGAGGGCTCAAACTCACCATCCCTTGGACCCCTTAACTGCTGCTGAAATTTCTGTGGCCGTGGCAACTGTCAGGGCAGCTGGAAGCACTCCCGAG...................................................................................GTGAGAGATAGCATGCGCTTTGTTGAGGTTGTTTTGGTGGAACCAGATAAGAGTGTGGTTGCTTTAGCTGATGCGTACTTCTTTCCTCCTTTTCAACCATCTTTATTGCCGAGAACAAAAGGTGGGCCTGTAATTCCCAGTAAACTTCCTCCAAGGAAAGCTAAACTGATTGTTTATAACAAGAAATCAAATGAGACCAGCATATGGATTGTTGAGCTCTCACAGGTTCATGCTGTCACTCGAGGAGGCCACCACCGTGGCAAAGTCATTTCATCTAAAGTCGTGCCCGATATACACCCACCAATG....................................................................................................................................................................................................................................................................................................................................................................................GGACGCCGTTGAATATGCTGAATGCCAAGCCGTGGTGGAAGGATTTCCCTCCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736570" ref_strand="+" ref_description="SGN-E736570 [LC06BB09]">
      <seq>attctccattgaaaaactcaaaaacaagttttcgcagagagaagaatcagtcggaagaaggtggtgaatttgtcaaatcggagaaggagaatagtgaatctctgtatgtcagaggattactactactactattacagtaacaagtactacggcggttacggtgaacttaccaatccattacaatggcctcagctcaggaaaagacgacggtttctgccccttcacgaaatgcttccgccgcttctgaaactgaatggaatgctggtggaaccgtaactgatgtttctgatctttcatccaccagatcggctagttctgctgctccctctactttgacggctgtgattgattctattgatcgtccttctgcgcaaaatcagcagcctgctgtgaaaggactgcctaccttattgagggctcaaactcaccatcccttggaccccttaactgctgctgaaatttctgtggccgtggcaactgtcagggcagctggaagcactcccgaggtgagagatagcatgcgctttgttgaggttgttttggtggaaccagataagagtgtggttgctttagctgatgcgtacttctttcctccttttcaaccatctttattgccgagaacaaaaggtgggcctgtaattcccagtaaacttcctccaaggaaagctaaactgattgtttataacaagaaatcaaatgagaccagcatatggattgttgagctctcacaggttcatgctgtcactcgaggaggccaccaccgtggcaaagtcatttcatctaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="21397" stop="24153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21697" g_stop="22092" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22093" i_stop="23379" i_length="1287">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23380" g_stop="23489" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="506" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23490" i_stop="23572" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23573" g_stop="23853" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="787" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E736570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21697" e_stop="22092"/>
          <exon e_start="23380" e_stop="23489"/>
          <exon e_start="23573" e_stop="23853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCCATTGAAAAACTCAAAAACAAGTTTTCGCAGAGAGAAGAATCAGTCGGAAGAAGGTGGTGAATTTGTCAAATCGGAGAAGGAGAATAGTGAATCTCTGTATGTCAGAGGATTACTACTACTACTATTACAGTAACAAGTACTACGGCGGTTACGGTGAACTTACCAATCCATTACAATGGCCTCAGCTCAGGAAAAGACGACGGTTTCTGCCCCTTCACGAAATGCTTCCGCCGCTTCTGAAACTGAATGGAATGCTGGTGGAACCGTAACTGATGTTTCTGATCTTTCATCCACCAGATCGGCTAGTTCTGCTGCTCCCTCTACTTTGACGGCTGTGATTGATTCTATTGATCGTCCTTCTGCGCAAAATCAGCAGCCTGCTGTGAAAGGTATATTTGCTTTCATGATTTGAATTGTTATTTTGTTGCTCTGTATGTACATGCAGAACTGAAATATCTCGAATCTCGATCGTACCGCCTTGTTTTTGGCTATTTGTAGGATGACTGCTGCTGAAAAATGTTAATTCGTGTTGCTAATAGGTTAAACTTTGAGAGAAAGCGTGTGAAAATACGCATGACTTATCAAGCTAATTTTGTTTCTTTGTGCGGAGCCGTATTTTACTGGTTTACCTTCTTTCTTCTCTTCAGCATGTAAAACTTGCATCCTTCACCTTGATTGCCGATTCACCTTTTCTAAATTTGGAGAGAAGAGAAAAAGGGCATAAAAATGGTGAAAAATCGTGACTGATTTTGTTTATTTGTCACTTTTCCTTTTGTAAATCACAACTTTTACTCGTGTTTTGTTCCCAGGCAAGGGATATCCTCCTCTCGCCGTCTTCCTCTTTGTGTCAGTCACGAGTTCATTGTTTTTTCTTTTTTTGTTTGACAAGTTCTGGAAAAAGTTTTCTAAGCAATATTTTAGAAAAAAAAAGTGTGTAAAAGAAAAAAAAGAAAAACATTTTTCGACGGTTGAAATGTTCTTAAAGTTTGTGCTTTCCAGCTGGAAGATGACTTCGCTTTTCATTTCAGGAAGTGCTCAATACATTTTATTCCTCCAATAATTTTGAATTTCCCAGAGGTTCTCAGAGCCAAATGCCTAAAAAATCTTATGGTATTGTGGTTTATACATATGAAATTATTATTATTCTCATATGTTGCAGTGGAGTGTGTTTTAATGTAAGCCTTCTCCATTTTCCTTAAATCATTTAATCACAATTCAACAACATACTCAACAAGAGTGGTGTGGGAAGGGTAGGATGTACACATGCCTTACCCATGGGGTAGAGAGGTTGTTTCCAATAGACCTCACTCAATCACAACTTAAAGCACCAGACAATACTTTATACTGCTGAAGTCTAGTCTAGCACCACAGTGGTCAGGACTTGGAAGCCAAACCTATAGAACAAATTTGATTACATAATTACAAAATTTGAGAGTTGAAATAAATCCAAGGTTTGGCCAGAATGCACTGTAGATACTTGGGCAGTTCAGTCAGAGCTCGAGAGTTTAGATTTCCAAATAATCCACGGTTTGTCTGCAAAGTGTTTTAGGTATTTGGACCGTTAGTCTTAGTCATCAACTTGGAATGACAAGTTTATATCAAGAGTTGGTGTGTAAGGAACGTTGAGAAAATTTGTGGCTCATTCACGTACAATTGTTCAAATTTGATGTTGACAGGACTGCCTACCTTATTGAGGGCTCAAACTCACCATCCCTTGGACCCCTTAACTGCTGCTGAAATTTCTGTGGCCGTGGCAACTGTCAGGGCAGCTGGAAGCACTCCCGAGGTCATTATTATTCTATGCATATAGATGTTTTTTGTTTCTGATTCTCTTATTATCAATATTTATCAGTGTACTTCGATGTTTAGGTGAGAGATAGCATGCGCTTTGTTGAGGTTGTTTTGGTGGAACCAGATAAGAGTGTGGTTGCTTTAGCTGATGCGTACTTCTTTCCTCCTTTTCAACCATCTTTATTGCCGAGAACAAAAGGTGGGCCTGTAATTCCCAGTAAACTTCCTCCAAGGAAAGCTAAACTGATTGTTTATAACAAGAAATCAAATGAGACCAGCATATGGATTGTTGAGCTCTCACAGGTTCATGCTGTCACTCGAGGAGGCCACCACCGTGGCAAAGTCATTTCATCTAAAGT</genome_strand>
        <mrna_strand>ATTCTCCATTGAAAAACTCAAAAACAAGTTTTCGCAGAGAGAAGAATCAGTCGGAAGAAGGTGGTGAATTTGTCAAATCGGAGAAGGAGAATAGTGAATCTCTGTATGTCAGAGGATTACTACTACTACTATTACAGTAACAAGTACTACGGCGGTTACGGTGAACTTACCAATCCATTACAATGGCCTCAGCTCAGGAAAAGACGACGGTTTCTGCCCCTTCACGAAATGCTTCCGCCGCTTCTGAAACTGAATGGAATGCTGGTGGAACCGTAACTGATGTTTCTGATCTTTCATCCACCAGATCGGCTAGTTCTGCTGCTCCCTCTACTTTGACGGCTGTGATTGATTCTATTGATCGTCCTTCTGCGCAAAATCAGCAGCCTGCTGTGAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGCCTACCTTATTGAGGGCTCAAACTCACCATCCCTTGGACCCCTTAACTGCTGCTGAAATTTCTGTGGCCGTGGCAACTGTCAGGGCAGCTGGAAGCACTCCCGAG...................................................................................GTGAGAGATAGCATGCGCTTTGTTGAGGTTGTTTTGGTGGAACCAGATAAGAGTGTGGTTGCTTTAGCTGATGCGTACTTCTTTCCTCCTTTTCAACCATCTTTATTGCCGAGAACAAAAGGTGGGCCTGTAATTCCCAGTAAACTTCCTCCAAGGAAAGCTAAACTGATTGTTTATAACAAGAAATCAAATGAGACCAGCATATGGATTGTTGAGCTCTCACAGGTTCATGCTGTCACTCGAGGAGGCCACCACCGTGGCAAAGTCATTTCATCTAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699745" ref_strand="+" ref_description="SGN-E699745 [FA11AD06]">
      <seq>ttgataaattacactgccggtgaaacgagaggaggggttgaccgaagcgatgttaaacctcttcttattgttcaacctgaaggtcctagcttccgtgtcaatggacactttgttgaatggcagaagtggaactttcgtattggttttacccccagggagggcctggttatctattctgttgcgtatattgatggtagcagaggccgtagacctgttgctcatagactgagcttcattgaaatggttgtgccctatggggatccaaatgagccacattacagaaaaaatgcttttgatgcaggggaagatgggcttggtaaaaatgcacattccttaaagaagggttgtgattgcttaggttacattaaatatttcgatgcgcattttacaaatttcactggcggtgttgagacaattgaaaattgtgtctgtttacacgaggaggatcatggaatcttatggaagcatcaagattggagaactggtttagctgaagtacgacgctccagacggctaactgtgtctttcatctgtaccgtggcaaactatgaatatggattttactggcatttttatcaggatgggaagatcgaggctgaggtcaagctgactggaattctcagcttangtgctcttctaccaggggaagttcgaaaatatggaacaactattgcacctggcttgtatgcacctgtacatcagcacttctttgtggctcgcatggatatggctgttgattgcaaaatcagggaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="24386" stop="26262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24686" g_stop="24811" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24812" i_stop="24899" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24900" g_stop="25115" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="342" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25116" i_stop="25216" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25217" g_stop="25453" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="579" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25454" i_stop="25784" i_length="331">
            <donor d_prob="0.473" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25785" g_stop="25962" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="757" r_length="178" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E699745" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24686" e_stop="24811"/>
          <exon e_start="24900" e_stop="25115"/>
          <exon e_start="25217" e_stop="25453"/>
          <exon e_start="25785" e_stop="25962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAAATTACACTGCCGGTGAAACGAGAGGAGGGGTTGACCGAAGTGATGTTAAACCACTTCTTATTGTTCAACCTGAAGGTCCCAGCTTCCGTGTCAATGGACACTTTGTTGAATGGCAGAAGGTACTTTTTTTTTAAACAATATATCATTTTTCTGTATTTCTGTGGATGATTTAATTACTTCTATACCAATTATTGTTATACTATGCAGTGGAACTTTCGTATTGGTTTTACCCCCAGGGAGGGCCTGGTTATCTATTCTGTTGCGTATATTGATGGTAGCAGAGGCCGTAGACCTGTTGCTCATAGACTGAGCTTCATTGAAATGGTTGTGCCCTATGGGGATCCAAATGAGCCACATTACAGAAAAAATGCTTTTGATGCAGGGGAAGATGGGCTTGGTAAAAATGCACATTCCTTAAAGAAGGTCAGGAAATATTTTATTGGCATTGTGAAATGCATCTTCCATGTATAATATTTAGTGAACTTAACTTTGCGATCTCATATGAGTGCTCACTTTTATTGCAGGGTTGTGATTGCTTAGGTTACATTAAATATTTCGATGCGCATTTTACAAATTTCACTGGCGGTGTTGAGACAATTGAAAATTGTGTCTGTTTACACGAGGAGGATCATGGAATCTTATGGAAGCATCAAGATTGGAGAACTGGTTTAGCTGAAGTACGACGCTCCAGACGGCTAACTGTGTCTTTCATCTGTACCGTGGCAAACTATGAATATGGATTTTACTGGCATTTTTATCAGGTGGTTTACCCTTCTATAAATAAGAGCTAAATTGTTGGTTTCATTGGTTGCATAATCTCTTCCCGACGTCATGTGATTTACTTGTTTTAGCTAAATTCAGCTGGTGGTGCTTCAATTTGTAGCATTGTTTGCTTTTAATTTGAGCATGCATTTCCATGTTTCTAGACTGTACATTCATCACTTCAGTAAAGCAGGAGTTCCACTTTAATCAAATTAGTAGTCTGTAGTTCCTTTATGAAGGAGATGAAAAGGAGAAAATGTGGAGATATTTTGTCCATATGGATTTTGAGATTTGGATATTCAAACATCAATTTCTTATTTCTCACCACAGGATGGGAAGATCGAGGCTGAGGTCAAGCTGACTGGAATTCTCAGCTTAGGTGCTCTTCTACCAGGGGAAGTTCGAAAATATGGAACAACTATTGCACCTGGCTTGTATGCACCTGTACATCAGCACTTCTTTGTGGCTCGCATGGATATGGCTGTTGATTGCAAATCAGGGGAATCAC</genome_strand>
        <mrna_strand>TTGATAAATTACACTGCCGGTGAAACGAGAGGAGGGGTTGACCGAAGCGATGTTAAACCTCTTCTTATTGTTCAACCTGAAGGTCCTAGCTTCCGTGTCAATGGACACTTTGTTGAATGGCAGAAG........................................................................................TGGAACTTTCGTATTGGTTTTACCCCCAGGGAGGGCCTGGTTATCTATTCTGTTGCGTATATTGATGGTAGCAGAGGCCGTAGACCTGTTGCTCATAGACTGAGCTTCATTGAAATGGTTGTGCCCTATGGGGATCCAAATGAGCCACATTACAGAAAAAATGCTTTTGATGCAGGGGAAGATGGGCTTGGTAAAAATGCACATTCCTTAAAGAAG.....................................................................................................GGTTGTGATTGCTTAGGTTACATTAAATATTTCGATGCGCATTTTACAAATTTCACTGGCGGTGTTGAGACAATTGAAAATTGTGTCTGTTTACACGAGGAGGATCATGGAATCTTATGGAAGCATCAAGATTGGAGAACTGGTTTAGCTGAAGTACGACGCTCCAGACGGCTAACTGTGTCTTTCATCTGTACCGTGGCAAACTATGAATATGGATTTTACTGGCATTTTTATCAG...........................................................................................................................................................................................................................................................................................................................................GATGGGAAGATCGAGGCTGAGGTCAAGCTGACTGGAATTCTCAGCTTANGTGCTCTTCTACCAGGGGAAGTTCGAAAATATGGAACAACTATTGCACCTGGCTTGTATGCACCTGTACATCAGCACTTCTTTGTGGCTCGCATGGATATGGCTGTTGATTGCAAAATCAGGGAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200511" ref_strand="+" ref_description="SGN-E200511 [cLEB-8-B15]">
      <seq>gcacgaggttacattaaatatttcgatgcgcattttacaaatttcactggcggtgttgagacaattgaaaattgtgtctgtttacacgaggaggatcatggaatcttatggaagcatcaagattggagaactggtttagctgaagtacgacgctccagacggctaactgtgtctttcatctgtaccgtggcaaactatgaatatggattttactggcatttttatcaggatgggaagatcgaggctgaggtcaagctgactggaattctcagcttaggtgctcttctaccaggggaagttcgaaaatatggaacaactattgcacctggcttgtatgcacctgtacatcagcacttctttgtggctcgcatggatatggctgttgattgcaaatcaggggaatcacataatcaggtggttgaagtaaacgctagagttgaaccaccaggagaaaataatgttcataataatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="24931" stop="27090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25233" g_stop="25453" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="228" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25454" i_stop="25784" i_length="331">
            <donor d_prob="0.473" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25785" g_stop="25970" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="414" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25971" i_stop="26729" i_length="759">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26730" g_stop="26790" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="475" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E200511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25233" e_stop="25453"/>
          <exon e_start="25785" e_stop="25970"/>
          <exon e_start="26730" e_stop="26790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACATTAAATATTTCGATGCGCATTTTACAAATTTCACTGGCGGTGTTGAGACAATTGAAAATTGTGTCTGTTTACACGAGGAGGATCATGGAATCTTATGGAAGCATCAAGATTGGAGAACTGGTTTAGCTGAAGTACGACGCTCCAGACGGCTAACTGTGTCTTTCATCTGTACCGTGGCAAACTATGAATATGGATTTTACTGGCATTTTTATCAGGTGGTTTACCCTTCTATAAATAAGAGCTAAATTGTTGGTTTCATTGGTTGCATAATCTCTTCCCGACGTCATGTGATTTACTTGTTTTAGCTAAATTCAGCTGGTGGTGCTTCAATTTGTAGCATTGTTTGCTTTTAATTTGAGCATGCATTTCCATGTTTCTAGACTGTACATTCATCACTTCAGTAAAGCAGGAGTTCCACTTTAATCAAATTAGTAGTCTGTAGTTCCTTTATGAAGGAGATGAAAAGGAGAAAATGTGGAGATATTTTGTCCATATGGATTTTGAGATTTGGATATTCAAACATCAATTTCTTATTTCTCACCACAGGATGGGAAGATCGAGGCTGAGGTCAAGCTGACTGGAATTCTCAGCTTAGGTGCTCTTCTACCAGGGGAAGTTCGAAAATATGGAACAACTATTGCACCTGGCTTGTATGCACCTGTACATCAGCACTTCTTTGTGGCTCGCATGGATATGGCTGTTGATTGCAAATCAGGGGAATCACATAATCAGGTATGCCCTCACATTAGTCCTCCCAAAATCCCTTGTGAATCCTGCGCCGGACTTTTCTGATATTCCTTTTATTTTTATCTTTTTTACCAAAGAGGAGGTTTTTGGAACCTTGTGGGCATTACAACCTAAATATTTTCTTTTAATTGTCTGCAACTTCCTTTTCTCCTTCCAGATCCTTCTGATTATTTCTCCCACATGTCTTTTGTTCAATTCCTTAAACATACTGTGATGGTGTATCACGGGGGTTGGATCCTCTAATGTCATTTCTAGGAACCGTGTATCATTTCTCCAGTATGCAACACATTTAGCTTCAACCATAGGTTTCTTTTTTAATTCATCTCTATCTTGCTAGTAACCTTTTTGCTTGAATGCTATATGTTTCTTGTTGTTAGAGACCTGATAAAATTGGAAAAGTTCATGAAACATCCAAATTATGTTTGGACTGGAAGTCTGAAATGCTGTTTTGACTGGTATTTCTACATCAGAGATCGACCGACCACTTGAACCAGTTCATGTATTGATGACTCGGGGCAATGAAAAGGAAATCAATTATTAAGACTAAATTTAGCTATTTGTTCATGAGTAGTACATTCAGGATTTATGTATGGGTTTCTGATATAATTTGCCGAAGTATAACACACTAATTTTCATTGCTGGGGACAAAATAATATCCTCCTTGTTTATCCTACTTTCGGTATATGAACTTTTCTCCATATGTTTCTTTCATGTGAAATCTGATCCTAAGGTTTATTGTATTAGGTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCAT</genome_strand>
        <mrna_strand>GTTACATTAAATATTTCGATGCGCATTTTACAAATTTCACTGGCGGTGTTGAGACAATTGAAAATTGTGTCTGTTTACACGAGGAGGATCATGGAATCTTATGGAAGCATCAAGATTGGAGAACTGGTTTAGCTGAAGTACGACGCTCCAGACGGCTAACTGTGTCTTTCATCTGTACCGTGGCAAACTATGAATATGGATTTTACTGGCATTTTTATCAG...........................................................................................................................................................................................................................................................................................................................................GATGGGAAGATCGAGGCTGAGGTCAAGCTGACTGGAATTCTCAGCTTAGGTGCTCTTCTACCAGGGGAAGTTCGAAAATATGGAACAACTATTGCACCTGGCTTGTATGCACCTGTACATCAGCACTTCTTTGTGGCTCGCATGGATATGGCTGTTGATTGCAAATCAGGGGAATCACATAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317902" ref_strand="+" ref_description="SGN-E317902 [cTOA-30-E21]">
      <seq>ttacattaaatatttcgatgcgcattttacaaatttcactggcggtgttgagacaattgaaaattgtgtctgtttacacgaggaggatcatggaatcttatggaagcatcaagattggagaactggtttagctgaagtacgacgctccagacggctaactgtgtctttcatctgtaccgtggcaaactatgaatatggattttactggcatttttatcaggatgggaagatcgaggctgaggtcaagctgactggaattctcagcttaggtgctcttctaccaggggaagttcgaaaatatggaacaactattgcacctggcttgtatgcacctgtacatcagcacttctttgtggctcgcatggatatggctgttgattgcaaatcaggggaatcacataatcaggtggttgaagtaaacgctagagttgaaccaccaggagaaaataatgttcataataatgcattttatgctgaagaaagattgcttagaactgaactggaagcaatgcgtgattgtaatcctttaactgcacgccattggattatccggaacacaagaacagtcaatcgcactgggcagttaactggttataagctagtaccaggttcaaattgtctgccactagctggttcagaggcaaaattcttgaggagagctgccttctttaagcataatctttgggtcaccccttactctcgtgaagagatgtttcctggaggagagtttccaatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="24934" stop="27892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25234" g_stop="25453" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25454" i_stop="25784" i_length="331">
            <donor d_prob="0.473" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25785" g_stop="25970" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="406" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25971" i_stop="26729" i_length="759">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26730" g_stop="26870" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="547" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26871" i_stop="27399" i_length="529">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27400" g_stop="27592" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="739" r_length="192" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E317902" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25234" e_stop="25453"/>
          <exon e_start="25785" e_stop="25970"/>
          <exon e_start="26730" e_stop="26870"/>
          <exon e_start="27400" e_stop="27592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTAAATATTTCGATGCGCATTTTACAAATTTCACTGGCGGTGTTGAGACAATTGAAAATTGTGTCTGTTTACACGAGGAGGATCATGGAATCTTATGGAAGCATCAAGATTGGAGAACTGGTTTAGCTGAAGTACGACGCTCCAGACGGCTAACTGTGTCTTTCATCTGTACCGTGGCAAACTATGAATATGGATTTTACTGGCATTTTTATCAGGTGGTTTACCCTTCTATAAATAAGAGCTAAATTGTTGGTTTCATTGGTTGCATAATCTCTTCCCGACGTCATGTGATTTACTTGTTTTAGCTAAATTCAGCTGGTGGTGCTTCAATTTGTAGCATTGTTTGCTTTTAATTTGAGCATGCATTTCCATGTTTCTAGACTGTACATTCATCACTTCAGTAAAGCAGGAGTTCCACTTTAATCAAATTAGTAGTCTGTAGTTCCTTTATGAAGGAGATGAAAAGGAGAAAATGTGGAGATATTTTGTCCATATGGATTTTGAGATTTGGATATTCAAACATCAATTTCTTATTTCTCACCACAGGATGGGAAGATCGAGGCTGAGGTCAAGCTGACTGGAATTCTCAGCTTAGGTGCTCTTCTACCAGGGGAAGTTCGAAAATATGGAACAACTATTGCACCTGGCTTGTATGCACCTGTACATCAGCACTTCTTTGTGGCTCGCATGGATATGGCTGTTGATTGCAAATCAGGGGAATCACATAATCAGGTATGCCCTCACATTAGTCCTCCCAAAATCCCTTGTGAATCCTGCGCCGGACTTTTCTGATATTCCTTTTATTTTTATCTTTTTTACCAAAGAGGAGGTTTTTGGAACCTTGTGGGCATTACAACCTAAATATTTTCTTTTAATTGTCTGCAACTTCCTTTTCTCCTTCCAGATCCTTCTGATTATTTCTCCCACATGTCTTTTGTTCAATTCCTTAAACATACTGTGATGGTGTATCACGGGGGTTGGATCCTCTAATGTCATTTCTAGGAACCGTGTATCATTTCTCCAGTATGCAACACATTTAGCTTCAACCATAGGTTTCTTTTTTAATTCATCTCTATCTTGCTAGTAACCTTTTTGCTTGAATGCTATATGTTTCTTGTTGTTAGAGACCTGATAAAATTGGAAAAGTTCATGAAACATCCAAATTATGTTTGGACTGGAAGTCTGAAATGCTGTTTTGACTGGTATTTCTACATCAGAGATCGACCGACCACTTGAACCAGTTCATGTATTGATGACTCGGGGCAATGAAAAGGAAATCAATTATTAAGACTAAATTTAGCTATTTGTTCATGAGTAGTACATTCAGGATTTATGTATGGGTTTCTGATATAATTTGCCGAAGTATAACACACTAATTTTCATTGCTGGGGACAAAATAATATCCTCCTTGTTTATCCTACTTTCGGTATATGAACTTTTCTCCATATGTTTCTTTCATGTGAAATCTGATCCTAAGGTTTATTGTATTAGGTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCATTTTATGCTGAAGAAAGATTGCTTAGAACTGAACTGGAAGCAATGCGTGATTGTAATCCTTTAACTGCACGCCATTGGATTGTAAGTTTCCTCATCTCTTATTGGAGCTTTTCTATCAAAGGATATAGTAAAGTTTATATATGGGTTATGTAGCTTCTATGCTCTGCCTAAACAGTAAATAATATAATGGTATATGAACTTTTTGTTTGATGATGTACTGTATTCCTCTATCCTTCTATCAAAACTGAAGGCAGAAGCTGTATCGTGGCTATTCTCTTAGCTCAAATGCTGCAGTCTTAAATAATGGCAATAGTAGTACATTTTGCAAACTTGCCGCAGTTGATGTTTATTTAATTTGTCAATTATGGTAGTTGTGAATCCAGCACATGTTTTTTTTTGTGTTATTCGGCTGTTCCATCATGTGTATCTGAAGTTGTCTATTTTAAGTTATTGTCACTGTCTTAAACGATCCCAGCTTGTTTGGGACTGCTAAAGCTGTTGTTATCGTCAGTCTTGTGTATTTGTTTACCCCTCTGTTGTGTTATGGTGATTAGTTTGGCTTTTACTTGGACATGATGGTTAGATGGTATTTTCTTTCTTCAATATACAGATCCGGAACACAAGAACAGTCAATCGCACTGGGCAGTTAACTGGTTATAAGCTAGTACCAGGTTCAAATTGTCTGCCACTAGCTGGTTCAGAGGCAAAATTCTTGAGGAGAGCTGCCTTCTTAAAGCATAATCTTTGGGTCACCCCTTACTCTCGTGAAGAGATGTTTCCTGGAGGAGAGTTTCCAAATCAAA</genome_strand>
        <mrna_strand>TTACATTAAATATTTCGATGCGCATTTTACAAATTTCACTGGCGGTGTTGAGACAATTGAAAATTGTGTCTGTTTACACGAGGAGGATCATGGAATCTTATGGAAGCATCAAGATTGGAGAACTGGTTTAGCTGAAGTACGACGCTCCAGACGGCTAACTGTGTCTTTCATCTGTACCGTGGCAAACTATGAATATGGATTTTACTGGCATTTTTATCAG...........................................................................................................................................................................................................................................................................................................................................GATGGGAAGATCGAGGCTGAGGTCAAGCTGACTGGAATTCTCAGCTTAGGTGCTCTTCTACCAGGGGAAGTTCGAAAATATGGAACAACTATTGCACCTGGCTTGTATGCACCTGTACATCAGCACTTCTTTGTGGCTCGCATGGATATGGCTGTTGATTGCAAATCAGGGGAATCACATAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCATTTTATGCTGAAGAAAGATTGCTTAGAACTGAACTGGAAGCAATGCGTGATTGTAATCCTTTAACTGCACGCCATTGGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGAACACAAGAACAGTCAATCGCACTGGGCAGTTAACTGGTTATAAGCTAGTACCAGGTTCAAATTGTCTGCCACTAGCTGGTTCAGAGGCAAAATTCTTGAGGAGAGCTGCCTTCTTTAAGCATAATCTTTGGGTCACCCCTTACTCTCGTGAAGAGATGTTTCCTGGAGGAGAGTTTCC-AATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E557060" ref_strand="+" ref_description="SGN-E557060 [cTSD-3-F17]">
      <seq>gttcgaaaatatggaacaactattgcacctggcttgtatgcacctgtacatcagcacttctttgtggctcgcatggatatggctgttgattgcaaatcaggggaatcacataatcaggtggttgaagtaaacgctagagttgaaccaccaggagaaaataatgttcataataatgcattttatgctgaagaaagattgcttagaactgaactggaagcaatgcgtgattgtaatcctttaactgcacgccattggattatccggaacacaagaacagtcaatcgcactgggcagttaactggttataagctagtaccaggttcaaattgtctgccactagctggttcagaggcaaaattcttgaggagagctgccttcttaaagcataatctttgggtcaccccttactctcgtgaagagatgtttcctggaggagagtttccaaatcaaaatccccgtgttggtgaaggtttggctacttgggttcagcagaatcgatccctagaagaaacgcaaatagttctttggtatatttttggacttatacatgttccacggctagaagactggcctgtcatgccagtggaacacattggttttatgctccagcctcatgggttcttcaattgctccccagctgttgatgttcctcccagcatgtctgactcagatattaaggaaaacgggacagtggcaaagtcttgccacaacgatggtgtaatgtctaagctttgatagattcaatctagttttgtcttcagggatcgtgttgcacaaatgctttcttatctttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="25554" stop="31335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25854" g_stop="25970" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25971" i_stop="26729" i_length="759">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26730" g_stop="26870" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="258" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26871" i_stop="27399" i_length="529">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27400" g_stop="27668" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="527" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27669" i_stop="30067" i_length="2399">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30068" g_stop="30149" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="609" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30150" i_stop="30847" i_length="698">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30848" g_stop="31035" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="797" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E557060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25854" e_stop="25970"/>
          <exon e_start="26730" e_stop="26870"/>
          <exon e_start="27400" e_stop="27668"/>
          <exon e_start="30068" e_stop="30149"/>
          <exon e_start="30848" e_stop="31035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGAAAATATGGAACAACTATTGCACCTGGCTTGTATGCACCTGTACATCAGCACTTCTTTGTGGCTCGCATGGATATGGCTGTTGATTGCAAATCAGGGGAATCACATAATCAGGTATGCCCTCACATTAGTCCTCCCAAAATCCCTTGTGAATCCTGCGCCGGACTTTTCTGATATTCCTTTTATTTTTATCTTTTTTACCAAAGAGGAGGTTTTTGGAACCTTGTGGGCATTACAACCTAAATATTTTCTTTTAATTGTCTGCAACTTCCTTTTCTCCTTCCAGATCCTTCTGATTATTTCTCCCACATGTCTTTTGTTCAATTCCTTAAACATACTGTGATGGTGTATCACGGGGGTTGGATCCTCTAATGTCATTTCTAGGAACCGTGTATCATTTCTCCAGTATGCAACACATTTAGCTTCAACCATAGGTTTCTTTTTTAATTCATCTCTATCTTGCTAGTAACCTTTTTGCTTGAATGCTATATGTTTCTTGTTGTTAGAGACCTGATAAAATTGGAAAAGTTCATGAAACATCCAAATTATGTTTGGACTGGAAGTCTGAAATGCTGTTTTGACTGGTATTTCTACATCAGAGATCGACCGACCACTTGAACCAGTTCATGTATTGATGACTCGGGGCAATGAAAAGGAAATCAATTATTAAGACTAAATTTAGCTATTTGTTCATGAGTAGTACATTCAGGATTTATGTATGGGTTTCTGATATAATTTGCCGAAGTATAACACACTAATTTTCATTGCTGGGGACAAAATAATATCCTCCTTGTTTATCCTACTTTCGGTATATGAACTTTTCTCCATATGTTTCTTTCATGTGAAATCTGATCCTAAGGTTTATTGTATTAGGTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCATTTTATGCTGAAGAAAGATTGCTTAGAACTGAACTGGAAGCAATGCGTGATTGTAATCCTTTAACTGCACGCCATTGGATTGTAAGTTTCCTCATCTCTTATTGGAGCTTTTCTATCAAAGGATATAGTAAAGTTTATATATGGGTTATGTAGCTTCTATGCTCTGCCTAAACAGTAAATAATATAATGGTATATGAACTTTTTGTTTGATGATGTACTGTATTCCTCTATCCTTCTATCAAAACTGAAGGCAGAAGCTGTATCGTGGCTATTCTCTTAGCTCAAATGCTGCAGTCTTAAATAATGGCAATAGTAGTACATTTTGCAAACTTGCCGCAGTTGATGTTTATTTAATTTGTCAATTATGGTAGTTGTGAATCCAGCACATGTTTTTTTTTGTGTTATTCGGCTGTTCCATCATGTGTATCTGAAGTTGTCTATTTTAAGTTATTGTCACTGTCTTAAACGATCCCAGCTTGTTTGGGACTGCTAAAGCTGTTGTTATCGTCAGTCTTGTGTATTTGTTTACCCCTCTGTTGTGTTATGGTGATTAGTTTGGCTTTTACTTGGACATGATGGTTAGATGGTATTTTCTTTCTTCAATATACAGATCCGGAACACAAGAACAGTCAATCGCACTGGGCAGTTAACTGGTTATAAGCTAGTACCAGGTTCAAATTGTCTGCCACTAGCTGGTTCAGAGGCAAAATTCTTGAGGAGAGCTGCCTTCTTAAAGCATAATCTTTGGGTCACCCCTTACTCTCGTGAAGAGATGTTTCCTGGAGGAGAGTTTCCAAATCAAAATCCCCGTGTTGGTGAAGGTTTGGCTACTTGGGTTCAGCAGAATCGATCCCTAGAAGAAACGCAAATAGTTCTTTGGTTAGTCCATTCTCAATACAGATTAGATTTCTTATGGCGACAAAAAAGTATACTAATTACTCATTTTTCTTGTGTCTTGGCCATTCTCATCTGTTATTTCAAGGTTTATCATCTAAAGTAGTGGTGGCGAATATGCGGGTTGGGTCATATTTGGGCGGGTTGAAAATGGGTAATAACTGAACCTGCCCATGTGTGGGTAAAATGGATTGGGTAACAAATGGGATGGGTAAAATACAAGTTTACCCTTACTTTCATGAGTAAATAGTACTCTACTTATGTGGAGAAAATTTTATGGTCTTTTTTTGGATGAAAAATGTTAAAATACTTTGGTTAGTTTTATTATATCATAAAAGTAAAAATAAAAGTATTTTTTTTTTGGTAAGTAAAATTTTATTTACCAAGTAAACGTTACAAAACAAGAAAATTAGCCGGTATGGACATAAGCTCCATCCTTGCTAAACCAACTTCCATACCTACTAGCTATTCCTATGGGTAGTTATTCAAATTGCATAATCTAGTAGCTATTCTAGGATACCTTATACCTCTCCCATGGATATCTTGAATTATCCTTCTGATCAAGCATCCTGCTGCCTGATGTTTTTGTTGAAATATACTAGCATTACGCTCTAACCAAATATGATAAATGGTGCTTGCCATTGCCATTCTATACACAAGTGTCCTACTGCTTCCTCCTTTCATGTATTTCACTGCCCATTATATCTCATTAATCCAATTCATTACACTTCTTGTTATGCCTTGCCACTGCAGTATACCCCTCCACACCTCTTCTGCATGTACATTGGAAGAAAATATGATCATGATCTTCATCCATTTGTTGACATAAGGGACGAGTTAATACTTGTAGAATTCCCCATTTTGCCAATCTATCCTTTGTTGCAAGTCTACCATTTACTGCCAGATTCATGATGAATAGCCAAAACATCAGCAAATCATCAGCAGAACTTAAGTGCACTATTTTTTGTTCTTTGCTCCTAGGATGGTAGTGAAACTCAGGCTTTCCCTGCAGAGTCTTTAAAATTCTGGTCAGATAATCCATGGCTAGCACAAACAAATAAGGAGACGTTGGATCTCCTTCCTTACTCCTCTCTTTGCCTTAAAAGGTTTTGTGTTATGTCTATTTACCTGGATGGAATAGGTGACTGGTGACACATTGCATGTTCCATTTTATGACTTTAGATGGCATTTGAACTTCTTCCAATATTTGCTCCAAGAATGTCCATTCCAAGGAATCATATGCTTTCCTCATATCCACTTTTATCATACATCTCCTAGAAATTCCTTGTCTACCATATCCTTTGATCAATTCATGACTCAATATAACATCATCATTCAAAGCCCTCCCTGGCACAAAAGCTGACTGATTTGGTTCCACTAATGTTTCCATAACAGGTTTTAGTTTGGCAGTGACTACTTTAGCTATGATTTCATATAATGTTGAGCAACATGATATAGGTCTGTACTCATTGATTTTGGTTGGATTCTGCACCTTAGGAAATGAGGGTCACATTTGTAGAATTGATTGCCTTGTACATTTCCCCTGTATCAAAGAAATTTAGTACAGCATTAACTGTCTCCTCTCCCACCACAGGCCAAGCCTTCTTGAAAAATACAGCATTAAGTCCATCCCTACCTGGGGCTTTGAGATTATTTATTCCCTGCAAAGCAAATTCCACTTTCTTTCTTGTGACTGGAGCTGTTAATTTCAATTGTTGTCCCCTATTAATCTTACTTTTTAATATTGAAAAAAATTCATGTAATAACAAGGGGGAAATATTTTTGATTTCAAAGTAAAAGAATATTTGTATTTTAGGATTAAAACGTATTTAATGCATTTTAATCAGTGTCTTACTTAACACTATTGTTTGTTATCCAATATAAAATTTTAAAAATTAATTATTATTAACAATGAAATGTACATTTAATATATATAATTTTTTGGAGGGTCAAAGATTGCACCTTTTCAATTATAGAGAGGAATAATTTGTTGGAAGCTTGACCTATTTGGTCTTTACCCACGAATACCTATATTTTGATGGGTTGAATATGTGTTTAAACCCGATTTTATCCAAGTAAAAAATCACTCAACTCATTAGAATATGAGATGATTTGAGGAGTTATTGAAATATGAGCTCAATTTGCCGGCACTAATAGAAAGAACTTCACAAAGAGGAGATACACAAAAGTGCAACCATTGGAGTGAAAATATGTTATTGACATTCACTAAAGGGGTTGGGAAGAGGGGAAGGGAGGGTTCAGTGGAATGATGAAAAAATGGATAAAAGAGCAATTAGTACAGCTAAAAATTGAAACGAAACATTATGGCTATCAAGCTTGTTACATATTTCTGGTTATGCTGACCAAGTTTTCTAAATTTTCAGGTATATTTTTGGACTTATACATGTTCCACGGCTAGAAGACTGGCCTGTCATGCCAGTGGAACACATTGGTTTTATGCTCCAGGTATAGTAAATGGGCTTTGACTTTTTTCTTTCTTGATCGGCAGTGTCATTCCACATATACAGTAGAAATCCTTTTCACTGGTAAAACATGTGCCCAGTTAAGCATATCCATCAACAGGTGTTTAGCATTATCTAATTCTCACCCATTTACTTTTCACAATGGATTGGGGCTGGGAGAGCTAAAGGCTTTGTTCTAGTGGGAGTGACATGATCACAACATGTGATGTGTGGGTTAGTGGGACATCATGGATTTTTGAACCTTGCTGAAGCTGTAGTCTTGTATTTAAGTGGTAAGTCAGTAGAGGAGGATCCTCTATATGCTGGATTTCTAGCTTGTTCCCCACAAGTCCTCGGATATTAATGACTTCTTAACAAAATAGAACTGGGGTTGAGAATAGGTTGGGCTGTGTTTCTTGTGACACTACTAGCACTCGACGCGGCATTTGTTCCATATCTTTACAGCTTGTGTTTATGTTGGTGAAATATTTCTGGACTTGTGTACCTGCATTTGAGTTGATAGGTTGGCTCCCACCTTCAAGTTTTTTGTTTTTTTTTGTCTTCTCTCGAAGCAAAAGAATTTCTTTTCCGAGGATATGGTGATATCCATCATTGTGAAACAACCTACAACGGTTTTTGTAAATTCTATGCTCCACATGACTATGTTAATTCTGTTGTTGATAAATGTTGTTTATGATGCAGCCTCATGGGTTCTTCAATTGCTCCCCAGCTGTTGATGTTCCTCCCAGCATGTCTGACTCAGATATTAAGGAAAACGGGACAGTGGCAAAGTCTTGCCACAACGATGGTGTAATGTCTAAGCTTTGATAGATTCAATCTAGTTTTGTCTTCAGGGATCGTGTTGCACAAATGCTTTCTTATCTTTGTAT</genome_strand>
        <mrna_strand>GTTCGAAAATATGGAACAACTATTGCACCTGGCTTGTATGCACCTGTACATCAGCACTTCTTTGTGGCTCGCATGGATATGGCTGTTGATTGCAAATCAGGGGAATCACATAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCATTTTATGCTGAAGAAAGATTGCTTAGAACTGAACTGGAAGCAATGCGTGATTGTAATCCTTTAACTGCACGCCATTGGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGAACACAAGAACAGTCAATCGCACTGGGCAGTTAACTGGTTATAAGCTAGTACCAGGTTCAAATTGTCTGCCACTAGCTGGTTCAGAGGCAAAATTCTTGAGGAGAGCTGCCTTCTTAAAGCATAATCTTTGGGTCACCCCTTACTCTCGTGAAGAGATGTTTCCTGGAGGAGAGTTTCCAAATCAAAATCCCCGTGTTGGTGAAGGTTTGGCTACTTGGGTTCAGCAGAATCGATCCCTAGAAGAAACGCAAATAGTTCTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTTTGGACTTATACATGTTCCACGGCTAGAAGACTGGCCTGTCATGCCAGTGGAACACATTGGTTTTATGCTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCATGGGTTCTTCAATTGCTCCCCAGCTGTTGATGTTCCTCCCAGCATGTCTGACTCAGATATTAAGGAAAACGGGACAGTGGCAAAGTCTTGCCACAACGATGGTGTAATGTCTAAGCTTTGATAGATTCAATCTAGTTTTGTCTTCAGGGATCGTGTTGCACAAATGCTTTCTTATCTTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704408" ref_strand="+" ref_description="SGN-E704408 [FA24AH02]">
      <seq>catggatatggctgttgattgcaaatcaggggaatcacataatcaggtggttgaagtaaacgctagagttgaaccaccaggagaaaataatgttcataataatgcattttatgctgaagaaagattgcttagaactgaactggaagcaatgcgtgattgtaatcctttaactgcacgccattggattatccggaacacaagaacagtcaatcgcactgggcagttaactggttataagctagtaccaggttcaaattgtctgccactagctggttcagaggcaaaattcttgaggagagctgccttcttaaagcataatctttgggtcaccccttactctcgtgaagagatgtttcctggaggagagtttccaaatcaaaatccccgtgttggtgaaggtttggctacttgggttcagcagaatcgatccctagaagaaacgcaaatagttctttggtatatttttggacttatacatgttccacggctagaagactggcctgtcatgccagtggaacacattggttttatgctccagcctcatgggttcttcaattgctccccagctgttgatgttcctcccagcatgtctgactcagatattaaggaaaacgggacagtggcaaagtcttgccacaacgatggtgtaatgtctaagctttgatagattcaatctagttttgtcttcagggatcgtgatgcacaaatgctttcttatctttgtatttggattgaataagcgaattcttgtgaacataaacattcgactgcaagnntggcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="25625" stop="31383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25925" g_stop="25970" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25971" i_stop="26729" i_length="759">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26730" g_stop="26870" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="187" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26871" i_stop="27399" i_length="529">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27400" g_stop="27668" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="456" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27669" i_stop="30067" i_length="2399">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30068" g_stop="30149" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="538" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30150" i_stop="30847" i_length="698">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30848" g_stop="31082" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="773" r_length="235" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="781" polyA_stop="798"/>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E704408" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25925" e_stop="25970"/>
          <exon e_start="26730" e_stop="26870"/>
          <exon e_start="27400" e_stop="27668"/>
          <exon e_start="30068" e_stop="30149"/>
          <exon e_start="30848" e_stop="31082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGATATGGCTGTTGATTGCAAATCAGGGGAATCACATAATCAGGTATGCCCTCACATTAGTCCTCCCAAAATCCCTTGTGAATCCTGCGCCGGACTTTTCTGATATTCCTTTTATTTTTATCTTTTTTACCAAAGAGGAGGTTTTTGGAACCTTGTGGGCATTACAACCTAAATATTTTCTTTTAATTGTCTGCAACTTCCTTTTCTCCTTCCAGATCCTTCTGATTATTTCTCCCACATGTCTTTTGTTCAATTCCTTAAACATACTGTGATGGTGTATCACGGGGGTTGGATCCTCTAATGTCATTTCTAGGAACCGTGTATCATTTCTCCAGTATGCAACACATTTAGCTTCAACCATAGGTTTCTTTTTTAATTCATCTCTATCTTGCTAGTAACCTTTTTGCTTGAATGCTATATGTTTCTTGTTGTTAGAGACCTGATAAAATTGGAAAAGTTCATGAAACATCCAAATTATGTTTGGACTGGAAGTCTGAAATGCTGTTTTGACTGGTATTTCTACATCAGAGATCGACCGACCACTTGAACCAGTTCATGTATTGATGACTCGGGGCAATGAAAAGGAAATCAATTATTAAGACTAAATTTAGCTATTTGTTCATGAGTAGTACATTCAGGATTTATGTATGGGTTTCTGATATAATTTGCCGAAGTATAACACACTAATTTTCATTGCTGGGGACAAAATAATATCCTCCTTGTTTATCCTACTTTCGGTATATGAACTTTTCTCCATATGTTTCTTTCATGTGAAATCTGATCCTAAGGTTTATTGTATTAGGTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCATTTTATGCTGAAGAAAGATTGCTTAGAACTGAACTGGAAGCAATGCGTGATTGTAATCCTTTAACTGCACGCCATTGGATTGTAAGTTTCCTCATCTCTTATTGGAGCTTTTCTATCAAAGGATATAGTAAAGTTTATATATGGGTTATGTAGCTTCTATGCTCTGCCTAAACAGTAAATAATATAATGGTATATGAACTTTTTGTTTGATGATGTACTGTATTCCTCTATCCTTCTATCAAAACTGAAGGCAGAAGCTGTATCGTGGCTATTCTCTTAGCTCAAATGCTGCAGTCTTAAATAATGGCAATAGTAGTACATTTTGCAAACTTGCCGCAGTTGATGTTTATTTAATTTGTCAATTATGGTAGTTGTGAATCCAGCACATGTTTTTTTTTGTGTTATTCGGCTGTTCCATCATGTGTATCTGAAGTTGTCTATTTTAAGTTATTGTCACTGTCTTAAACGATCCCAGCTTGTTTGGGACTGCTAAAGCTGTTGTTATCGTCAGTCTTGTGTATTTGTTTACCCCTCTGTTGTGTTATGGTGATTAGTTTGGCTTTTACTTGGACATGATGGTTAGATGGTATTTTCTTTCTTCAATATACAGATCCGGAACACAAGAACAGTCAATCGCACTGGGCAGTTAACTGGTTATAAGCTAGTACCAGGTTCAAATTGTCTGCCACTAGCTGGTTCAGAGGCAAAATTCTTGAGGAGAGCTGCCTTCTTAAAGCATAATCTTTGGGTCACCCCTTACTCTCGTGAAGAGATGTTTCCTGGAGGAGAGTTTCCAAATCAAAATCCCCGTGTTGGTGAAGGTTTGGCTACTTGGGTTCAGCAGAATCGATCCCTAGAAGAAACGCAAATAGTTCTTTGGTTAGTCCATTCTCAATACAGATTAGATTTCTTATGGCGACAAAAAAGTATACTAATTACTCATTTTTCTTGTGTCTTGGCCATTCTCATCTGTTATTTCAAGGTTTATCATCTAAAGTAGTGGTGGCGAATATGCGGGTTGGGTCATATTTGGGCGGGTTGAAAATGGGTAATAACTGAACCTGCCCATGTGTGGGTAAAATGGATTGGGTAACAAATGGGATGGGTAAAATACAAGTTTACCCTTACTTTCATGAGTAAATAGTACTCTACTTATGTGGAGAAAATTTTATGGTCTTTTTTTGGATGAAAAATGTTAAAATACTTTGGTTAGTTTTATTATATCATAAAAGTAAAAATAAAAGTATTTTTTTTTTGGTAAGTAAAATTTTATTTACCAAGTAAACGTTACAAAACAAGAAAATTAGCCGGTATGGACATAAGCTCCATCCTTGCTAAACCAACTTCCATACCTACTAGCTATTCCTATGGGTAGTTATTCAAATTGCATAATCTAGTAGCTATTCTAGGATACCTTATACCTCTCCCATGGATATCTTGAATTATCCTTCTGATCAAGCATCCTGCTGCCTGATGTTTTTGTTGAAATATACTAGCATTACGCTCTAACCAAATATGATAAATGGTGCTTGCCATTGCCATTCTATACACAAGTGTCCTACTGCTTCCTCCTTTCATGTATTTCACTGCCCATTATATCTCATTAATCCAATTCATTACACTTCTTGTTATGCCTTGCCACTGCAGTATACCCCTCCACACCTCTTCTGCATGTACATTGGAAGAAAATATGATCATGATCTTCATCCATTTGTTGACATAAGGGACGAGTTAATACTTGTAGAATTCCCCATTTTGCCAATCTATCCTTTGTTGCAAGTCTACCATTTACTGCCAGATTCATGATGAATAGCCAAAACATCAGCAAATCATCAGCAGAACTTAAGTGCACTATTTTTTGTTCTTTGCTCCTAGGATGGTAGTGAAACTCAGGCTTTCCCTGCAGAGTCTTTAAAATTCTGGTCAGATAATCCATGGCTAGCACAAACAAATAAGGAGACGTTGGATCTCCTTCCTTACTCCTCTCTTTGCCTTAAAAGGTTTTGTGTTATGTCTATTTACCTGGATGGAATAGGTGACTGGTGACACATTGCATGTTCCATTTTATGACTTTAGATGGCATTTGAACTTCTTCCAATATTTGCTCCAAGAATGTCCATTCCAAGGAATCATATGCTTTCCTCATATCCACTTTTATCATACATCTCCTAGAAATTCCTTGTCTACCATATCCTTTGATCAATTCATGACTCAATATAACATCATCATTCAAAGCCCTCCCTGGCACAAAAGCTGACTGATTTGGTTCCACTAATGTTTCCATAACAGGTTTTAGTTTGGCAGTGACTACTTTAGCTATGATTTCATATAATGTTGAGCAACATGATATAGGTCTGTACTCATTGATTTTGGTTGGATTCTGCACCTTAGGAAATGAGGGTCACATTTGTAGAATTGATTGCCTTGTACATTTCCCCTGTATCAAAGAAATTTAGTACAGCATTAACTGTCTCCTCTCCCACCACAGGCCAAGCCTTCTTGAAAAATACAGCATTAAGTCCATCCCTACCTGGGGCTTTGAGATTATTTATTCCCTGCAAAGCAAATTCCACTTTCTTTCTTGTGACTGGAGCTGTTAATTTCAATTGTTGTCCCCTATTAATCTTACTTTTTAATATTGAAAAAAATTCATGTAATAACAAGGGGGAAATATTTTTGATTTCAAAGTAAAAGAATATTTGTATTTTAGGATTAAAACGTATTTAATGCATTTTAATCAGTGTCTTACTTAACACTATTGTTTGTTATCCAATATAAAATTTTAAAAATTAATTATTATTAACAATGAAATGTACATTTAATATATATAATTTTTTGGAGGGTCAAAGATTGCACCTTTTCAATTATAGAGAGGAATAATTTGTTGGAAGCTTGACCTATTTGGTCTTTACCCACGAATACCTATATTTTGATGGGTTGAATATGTGTTTAAACCCGATTTTATCCAAGTAAAAAATCACTCAACTCATTAGAATATGAGATGATTTGAGGAGTTATTGAAATATGAGCTCAATTTGCCGGCACTAATAGAAAGAACTTCACAAAGAGGAGATACACAAAAGTGCAACCATTGGAGTGAAAATATGTTATTGACATTCACTAAAGGGGTTGGGAAGAGGGGAAGGGAGGGTTCAGTGGAATGATGAAAAAATGGATAAAAGAGCAATTAGTACAGCTAAAAATTGAAACGAAACATTATGGCTATCAAGCTTGTTACATATTTCTGGTTATGCTGACCAAGTTTTCTAAATTTTCAGGTATATTTTTGGACTTATACATGTTCCACGGCTAGAAGACTGGCCTGTCATGCCAGTGGAACACATTGGTTTTATGCTCCAGGTATAGTAAATGGGCTTTGACTTTTTTCTTTCTTGATCGGCAGTGTCATTCCACATATACAGTAGAAATCCTTTTCACTGGTAAAACATGTGCCCAGTTAAGCATATCCATCAACAGGTGTTTAGCATTATCTAATTCTCACCCATTTACTTTTCACAATGGATTGGGGCTGGGAGAGCTAAAGGCTTTGTTCTAGTGGGAGTGACATGATCACAACATGTGATGTGTGGGTTAGTGGGACATCATGGATTTTTGAACCTTGCTGAAGCTGTAGTCTTGTATTTAAGTGGTAAGTCAGTAGAGGAGGATCCTCTATATGCTGGATTTCTAGCTTGTTCCCCACAAGTCCTCGGATATTAATGACTTCTTAACAAAATAGAACTGGGGTTGAGAATAGGTTGGGCTGTGTTTCTTGTGACACTACTAGCACTCGACGCGGCATTTGTTCCATATCTTTACAGCTTGTGTTTATGTTGGTGAAATATTTCTGGACTTGTGTACCTGCATTTGAGTTGATAGGTTGGCTCCCACCTTCAAGTTTTTTGTTTTTTTTTGTCTTCTCTCGAAGCAAAAGAATTTCTTTTCCGAGGATATGGTGATATCCATCATTGTGAAACAACCTACAACGGTTTTTGTAAATTCTATGCTCCACATGACTATGTTAATTCTGTTGTTGATAAATGTTGTTTATGATGCAGCCTCATGGGTTCTTCAATTGCTCCCCAGCTGTTGATGTTCCTCCCAGCATGTCTGACTCAGATATTAAGGAAAACGGGACAGTGGCAAAGTCTTGCCACAACGATGGTGTAATGTCTAAGCTTTGATAGATTCAATCTAGTTTTGTCTTCAGGGATCGTGTTGCACAAATGCTTTCTTATCTTTGTATTTGGATTGAATAAGCGATTTCTTGTGAACATAAACATTCGACTGCAA</genome_strand>
        <mrna_strand>CATGGATATGGCTGTTGATTGCAAATCAGGGGAATCACATAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCATTTTATGCTGAAGAAAGATTGCTTAGAACTGAACTGGAAGCAATGCGTGATTGTAATCCTTTAACTGCACGCCATTGGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGAACACAAGAACAGTCAATCGCACTGGGCAGTTAACTGGTTATAAGCTAGTACCAGGTTCAAATTGTCTGCCACTAGCTGGTTCAGAGGCAAAATTCTTGAGGAGAGCTGCCTTCTTAAAGCATAATCTTTGGGTCACCCCTTACTCTCGTGAAGAGATGTTTCCTGGAGGAGAGTTTCCAAATCAAAATCCCCGTGTTGGTGAAGGTTTGGCTACTTGGGTTCAGCAGAATCGATCCCTAGAAGAAACGCAAATAGTTCTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTTTGGACTTATACATGTTCCACGGCTAGAAGACTGGCCTGTCATGCCAGTGGAACACATTGGTTTTATGCTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCATGGGTTCTTCAATTGCTCCCCAGCTGTTGATGTTCCTCCCAGCATGTCTGACTCAGATATTAAGGAAAACGGGACAGTGGCAAAGTCTTGCCACAACGATGGTGTAATGTCTAAGCTTTGATAGATTCAATCTAGTTTTGTCTTCAGGGATCGTGATGCACAAATGCTTTCTTATCTTTGTATTTGGATTGAATAAGCGAATTCTTGTGAACATAAACATTCGACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248614" ref_strand="+" ref_description="SGN-E248614 [cLEF-58-K23]">
      <seq>ggggaatcacataatcaggtggttgaagtaaacgctagagttgaaccaccaggagaaaataatgttcataataatgcattttatgctgaagaaagattgcttagaactgaactggaagcaatgcgtgattgtaatcctttaactgcacgccattggattatccggaacacaagaacagtcaatcgcactgggcagttaactggttataagctagtaccaggttcaaattgtctgccactagctggttcagaggcaaaattcttgaggagagctgccttcttaaagcataatctttgggtcaccccttactctcgtgaagagatgtttcctggaggagagtttccaaatcaaaatccccgtgttggtgaaggtttggctacttgggttcagcagaatcgatccctagaagaaacgcaaatagttctttggtatatttttggacttatacatgttccacggctagaagactggcctgtcatgccagtggaacacattggttttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="25653" stop="30445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25953" g_stop="25970" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25971" i_stop="26729" i_length="759">
            <donor d_prob="0.767" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26730" g_stop="26870" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="159" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26871" i_stop="27399" i_length="529">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27400" g_stop="27668" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="428" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27669" i_stop="30067" i_length="2399">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30068" g_stop="30145" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="506" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E248614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25953" e_stop="25970"/>
          <exon e_start="26730" e_stop="26870"/>
          <exon e_start="27400" e_stop="27668"/>
          <exon e_start="30068" e_stop="30145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAATCACATAATCAGGTATGCCCTCACATTAGTCCTCCCAAAATCCCTTGTGAATCCTGCGCCGGACTTTTCTGATATTCCTTTTATTTTTATCTTTTTTACCAAAGAGGAGGTTTTTGGAACCTTGTGGGCATTACAACCTAAATATTTTCTTTTAATTGTCTGCAACTTCCTTTTCTCCTTCCAGATCCTTCTGATTATTTCTCCCACATGTCTTTTGTTCAATTCCTTAAACATACTGTGATGGTGTATCACGGGGGTTGGATCCTCTAATGTCATTTCTAGGAACCGTGTATCATTTCTCCAGTATGCAACACATTTAGCTTCAACCATAGGTTTCTTTTTTAATTCATCTCTATCTTGCTAGTAACCTTTTTGCTTGAATGCTATATGTTTCTTGTTGTTAGAGACCTGATAAAATTGGAAAAGTTCATGAAACATCCAAATTATGTTTGGACTGGAAGTCTGAAATGCTGTTTTGACTGGTATTTCTACATCAGAGATCGACCGACCACTTGAACCAGTTCATGTATTGATGACTCGGGGCAATGAAAAGGAAATCAATTATTAAGACTAAATTTAGCTATTTGTTCATGAGTAGTACATTCAGGATTTATGTATGGGTTTCTGATATAATTTGCCGAAGTATAACACACTAATTTTCATTGCTGGGGACAAAATAATATCCTCCTTGTTTATCCTACTTTCGGTATATGAACTTTTCTCCATATGTTTCTTTCATGTGAAATCTGATCCTAAGGTTTATTGTATTAGGTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCATTTTATGCTGAAGAAAGATTGCTTAGAACTGAACTGGAAGCAATGCGTGATTGTAATCCTTTAACTGCACGCCATTGGATTGTAAGTTTCCTCATCTCTTATTGGAGCTTTTCTATCAAAGGATATAGTAAAGTTTATATATGGGTTATGTAGCTTCTATGCTCTGCCTAAACAGTAAATAATATAATGGTATATGAACTTTTTGTTTGATGATGTACTGTATTCCTCTATCCTTCTATCAAAACTGAAGGCAGAAGCTGTATCGTGGCTATTCTCTTAGCTCAAATGCTGCAGTCTTAAATAATGGCAATAGTAGTACATTTTGCAAACTTGCCGCAGTTGATGTTTATTTAATTTGTCAATTATGGTAGTTGTGAATCCAGCACATGTTTTTTTTTGTGTTATTCGGCTGTTCCATCATGTGTATCTGAAGTTGTCTATTTTAAGTTATTGTCACTGTCTTAAACGATCCCAGCTTGTTTGGGACTGCTAAAGCTGTTGTTATCGTCAGTCTTGTGTATTTGTTTACCCCTCTGTTGTGTTATGGTGATTAGTTTGGCTTTTACTTGGACATGATGGTTAGATGGTATTTTCTTTCTTCAATATACAGATCCGGAACACAAGAACAGTCAATCGCACTGGGCAGTTAACTGGTTATAAGCTAGTACCAGGTTCAAATTGTCTGCCACTAGCTGGTTCAGAGGCAAAATTCTTGAGGAGAGCTGCCTTCTTAAAGCATAATCTTTGGGTCACCCCTTACTCTCGTGAAGAGATGTTTCCTGGAGGAGAGTTTCCAAATCAAAATCCCCGTGTTGGTGAAGGTTTGGCTACTTGGGTTCAGCAGAATCGATCCCTAGAAGAAACGCAAATAGTTCTTTGGTTAGTCCATTCTCAATACAGATTAGATTTCTTATGGCGACAAAAAAGTATACTAATTACTCATTTTTCTTGTGTCTTGGCCATTCTCATCTGTTATTTCAAGGTTTATCATCTAAAGTAGTGGTGGCGAATATGCGGGTTGGGTCATATTTGGGCGGGTTGAAAATGGGTAATAACTGAACCTGCCCATGTGTGGGTAAAATGGATTGGGTAACAAATGGGATGGGTAAAATACAAGTTTACCCTTACTTTCATGAGTAAATAGTACTCTACTTATGTGGAGAAAATTTTATGGTCTTTTTTTGGATGAAAAATGTTAAAATACTTTGGTTAGTTTTATTATATCATAAAAGTAAAAATAAAAGTATTTTTTTTTTGGTAAGTAAAATTTTATTTACCAAGTAAACGTTACAAAACAAGAAAATTAGCCGGTATGGACATAAGCTCCATCCTTGCTAAACCAACTTCCATACCTACTAGCTATTCCTATGGGTAGTTATTCAAATTGCATAATCTAGTAGCTATTCTAGGATACCTTATACCTCTCCCATGGATATCTTGAATTATCCTTCTGATCAAGCATCCTGCTGCCTGATGTTTTTGTTGAAATATACTAGCATTACGCTCTAACCAAATATGATAAATGGTGCTTGCCATTGCCATTCTATACACAAGTGTCCTACTGCTTCCTCCTTTCATGTATTTCACTGCCCATTATATCTCATTAATCCAATTCATTACACTTCTTGTTATGCCTTGCCACTGCAGTATACCCCTCCACACCTCTTCTGCATGTACATTGGAAGAAAATATGATCATGATCTTCATCCATTTGTTGACATAAGGGACGAGTTAATACTTGTAGAATTCCCCATTTTGCCAATCTATCCTTTGTTGCAAGTCTACCATTTACTGCCAGATTCATGATGAATAGCCAAAACATCAGCAAATCATCAGCAGAACTTAAGTGCACTATTTTTTGTTCTTTGCTCCTAGGATGGTAGTGAAACTCAGGCTTTCCCTGCAGAGTCTTTAAAATTCTGGTCAGATAATCCATGGCTAGCACAAACAAATAAGGAGACGTTGGATCTCCTTCCTTACTCCTCTCTTTGCCTTAAAAGGTTTTGTGTTATGTCTATTTACCTGGATGGAATAGGTGACTGGTGACACATTGCATGTTCCATTTTATGACTTTAGATGGCATTTGAACTTCTTCCAATATTTGCTCCAAGAATGTCCATTCCAAGGAATCATATGCTTTCCTCATATCCACTTTTATCATACATCTCCTAGAAATTCCTTGTCTACCATATCCTTTGATCAATTCATGACTCAATATAACATCATCATTCAAAGCCCTCCCTGGCACAAAAGCTGACTGATTTGGTTCCACTAATGTTTCCATAACAGGTTTTAGTTTGGCAGTGACTACTTTAGCTATGATTTCATATAATGTTGAGCAACATGATATAGGTCTGTACTCATTGATTTTGGTTGGATTCTGCACCTTAGGAAATGAGGGTCACATTTGTAGAATTGATTGCCTTGTACATTTCCCCTGTATCAAAGAAATTTAGTACAGCATTAACTGTCTCCTCTCCCACCACAGGCCAAGCCTTCTTGAAAAATACAGCATTAAGTCCATCCCTACCTGGGGCTTTGAGATTATTTATTCCCTGCAAAGCAAATTCCACTTTCTTTCTTGTGACTGGAGCTGTTAATTTCAATTGTTGTCCCCTATTAATCTTACTTTTTAATATTGAAAAAAATTCATGTAATAACAAGGGGGAAATATTTTTGATTTCAAAGTAAAAGAATATTTGTATTTTAGGATTAAAACGTATTTAATGCATTTTAATCAGTGTCTTACTTAACACTATTGTTTGTTATCCAATATAAAATTTTAAAAATTAATTATTATTAACAATGAAATGTACATTTAATATATATAATTTTTTGGAGGGTCAAAGATTGCACCTTTTCAATTATAGAGAGGAATAATTTGTTGGAAGCTTGACCTATTTGGTCTTTACCCACGAATACCTATATTTTGATGGGTTGAATATGTGTTTAAACCCGATTTTATCCAAGTAAAAAATCACTCAACTCATTAGAATATGAGATGATTTGAGGAGTTATTGAAATATGAGCTCAATTTGCCGGCACTAATAGAAAGAACTTCACAAAGAGGAGATACACAAAAGTGCAACCATTGGAGTGAAAATATGTTATTGACATTCACTAAAGGGGTTGGGAAGAGGGGAAGGGAGGGTTCAGTGGAATGATGAAAAAATGGATAAAAGAGCAATTAGTACAGCTAAAAATTGAAACGAAACATTATGGCTATCAAGCTTGTTACATATTTCTGGTTATGCTGACCAAGTTTTCTAAATTTTCAGGTATATTTTTGGACTTATACATGTTCCACGGCTAGAAGACTGGCCTGTCATGCCAGTGGAACACATTGGTTTTATGCT</genome_strand>
        <mrna_strand>GGGGAATCACATAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCATTTTATGCTGAAGAAAGATTGCTTAGAACTGAACTGGAAGCAATGCGTGATTGTAATCCTTTAACTGCACGCCATTGGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGAACACAAGAACAGTCAATCGCACTGGGCAGTTAACTGGTTATAAGCTAGTACCAGGTTCAAATTGTCTGCCACTAGCTGGTTCAGAGGCAAAATTCTTGAGGAGAGCTGCCTTCTTAAAGCATAATCTTTGGGTCACCCCTTACTCTCGTGAAGAGATGTTTCCTGGAGGAGAGTTTCCAAATCAAAATCCCCGTGTTGGTGAAGGTTTGGCTACTTGGGTTCAGCAGAATCGATCCCTAGAAGAAACGCAAATAGTTCTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTTTGGACTTATACATGTTCCACGGCTAGAAGACTGGCCTGTCATGCCAGTGGAACACATTGGTTTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321851" ref_strand="+" ref_description="SGN-E321851 [cTOB-29-C3]">
      <seq>tccttattatatttctttccatttcaagaatctgaaaccccttcatctcatttcttcttttgaacaaactccattttcatttcaatagcaatcgccttcacaaattcgaaatcttgtgctaaatttggttatcattttccttcaatttcaatggcaatggcagcgatttcacctgaatcccaaatgattcaaagaacatggccgtgtaattcggacggtggtcctcgtttcaccgccatttcgtttatcggaaaacatgtcaataagaatgataatcgaagaataacaaacaaccccacaaccaataatttccaaattagtccaaaaaatcaagatttcgctgatttttcacaacttcctgacgatgtgctattgaaaattgcagctaatttcactttacctaatttacgtgcggcttcacaagtatgtaagtcttggtgtgatgggttgaaacctttaagagaagctatgttgtttcttaaaaatgggaagcggtttaagcatgggcgtggaggggtgaaacctgatttgaataaggctcttgaatcgttccttaaaggtgcggctcttgggtctacgttggctatggtggatgctggattggtttattgggaaatggggaggaaggaaacaaggattgctttttacagaaaagcagctgcgcttggtgatcctgctggtcagtgtaatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="53151" stop="51857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52851" g_stop="52157" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E321851" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52851" e_stop="52157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTATTATATTTCTTTCCATTTCAAGAATCTGAAACCCCTTCATCTCATTTCTTCTTTTGAACAAACTCCATTTTCATTTCAATAGCAATCGCCTTCACAAATTCGAAATCTTGTGCTAAATTTGGTTATCATTTTCCTTCAATTTCAATGGCAATGGCAGCGATTTCACCTGAATCCCAAATGATTCAAAGAACATGGCCGTGTAATTCGGACGGTGGTCCTCGTTTCACCGCCATTTCGTTTATCGGAAAACATGTCAATAAGAATGATAATCGAAGAATAACAAACAACCCCACAACCAATAATTTCCAAATTAGTCCAAAAAATCAAGATTTCGCTGATTTTTCACAACTTCCTGACGATGTGCTATTGAAAATTGCAGCTAATTTCACTTTACCTAATTTACGTGCGGCTTCACAAGTATGTAAGTCTTGGTGTGATGGGTTGAAACCTTTAAGAGAAGCTATGTTGTTTCTTAAAAATGGGAAGCGGTTTAAGCATGGGCGTGGAGGGGTGAAACCTGATTTGAATAAGGCTCTTGAATCGTTCCTTAAAGGTGCGGCTCTTGGGTCTACGTTGGCTATGGTGGATGCTGGATTGGTTTATTGGGAAATGGGGAGGAAGGAACAAGGGATTGCTTTTTACAGAAAAGCAGCTGCGCTTGGTGATCCTGCTGGTCAGTGTAATTTGGG</genome_strand>
        <mrna_strand>TCCTTATTATATTTCTTTCCATTTCAAGAATCTGAAACCCCTTCATCTCATTTCTTCTTTTGAACAAACTCCATTTTCATTTCAATAGCAATCGCCTTCACAAATTCGAAATCTTGTGCTAAATTTGGTTATCATTTTCCTTCAATTTCAATGGCAATGGCAGCGATTTCACCTGAATCCCAAATGATTCAAAGAACATGGCCGTGTAATTCGGACGGTGGTCCTCGTTTCACCGCCATTTCGTTTATCGGAAAACATGTCAATAAGAATGATAATCGAAGAATAACAAACAACCCCACAACCAATAATTTCCAAATTAGTCCAAAAAATCAAGATTTCGCTGATTTTTCACAACTTCCTGACGATGTGCTATTGAAAATTGCAGCTAATTTCACTTTACCTAATTTACGTGCGGCTTCACAAGTATGTAAGTCTTGGTGTGATGGGTTGAAACCTTTAAGAGAAGCTATGTTGTTTCTTAAAAATGGGAAGCGGTTTAAGCATGGGCGTGGAGGGGTGAAACCTGATTTGAATAAGGCTCTTGAATCGTTCCTTAAAGGTGCGGCTCTTGGGTCTACGTTGGCTATGGTGGATGCTGGATTGGTTTATTGGGAAATGGGGAGGAAGGAAACAAGGATTGCTTTTTACAGAAAAGCAGCTGCGCTTGGTGATCCTGCTGGTCAGTGTAATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321921" ref_strand="+" ref_description="SGN-E321921 [cTOB-29-G15]">
      <seq>tccttattatatttctttccatttcaagaatcagaaaccccttcatctcatttcttcttttgaacaaactccattttcatttcaatagcaatcgccttcacaaattccaaatcttgtgctaaatttggttatcattttccttcaatttcaatggcaatggcagcgatttcacctgaatcccaaatgattcaaagaacatggccgtgtaattcggacggtggacctcgtttcaccgccatttcgtttatcggaaaacatgtcaataagaatgataatcgaagaataacaaacaaccccacaaccaataatttccaaattagtccaaaaaatcaagatttcgctgatttttcacaacttcctgacgatgtgctattgaaaattgcagctaatttcactttacctaatttacgtgcggcttcacaagtatgtaagtcttggtgtgatgggttgaaacctttaagagaagctatgatgattcttaaaaatgggaagcggtttaagcatgggcgtggaggggtgaaacctgatttgaataacgctcttgaatcgatccttaaaggtgcggctcttgggtctacgatggctatggtggatgctggattgggttattgtgaaatggggaagaaggaacaanggattgcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="53151" stop="51905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52851" g_stop="52205" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E321921" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52851" e_stop="52205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTATTATATTTCTTTCCATTTCAAGAATCTGAAACCCCTTCATCTCATTTCTTCTTTTGAACAAACTCCATTTTCATTTCAATAGCAATCGCCTTCACAAATTCGAAATCTTGTGCTAAATTTGGTTATCATTTTCCTTCAATTTCAATGGCAATGGCAGCGATTTCACCTGAATCCCAAATGATTCAAAGAACATGGCCGTGTAATTCGGACGGTGGTCCTCGTTTCACCGCCATTTCGTTTATCGGAAAACATGTCAATAAGAATGATAATCGAAGAATAACAAACAACCCCACAACCAATAATTTCCAAATTAGTCCAAAAAATCAAGATTTCGCTGATTTTTCACAACTTCCTGACGATGTGCTATTGAAAATTGCAGCTAATTTCACTTTACCTAATTTACGTGCGGCTTCACAAGTATGTAAGTCTTGGTGTGATGGGTTGAAACCTTTAAGAGAAGCTATGTTGTTTCTTAAAAATGGGAAGCGGTTTAAGCATGGGCGTGGAGGGGTGAAACCTGATTTGAATAAGGCTCTTGAATCGTTCCTTAAAGGTGCGGCTCTTGGGTCTACGTTGGCTATGGTGGATGCTGGATTGGTTTATTGGGAAATGGGGAGGAAGGAACAAGGGATTGCTTTTTA</genome_strand>
        <mrna_strand>TCCTTATTATATTTCTTTCCATTTCAAGAATCAGAAACCCCTTCATCTCATTTCTTCTTTTGAACAAACTCCATTTTCATTTCAATAGCAATCGCCTTCACAAATTCCAAATCTTGTGCTAAATTTGGTTATCATTTTCCTTCAATTTCAATGGCAATGGCAGCGATTTCACCTGAATCCCAAATGATTCAAAGAACATGGCCGTGTAATTCGGACGGTGGACCTCGTTTCACCGCCATTTCGTTTATCGGAAAACATGTCAATAAGAATGATAATCGAAGAATAACAAACAACCCCACAACCAATAATTTCCAAATTAGTCCAAAAAATCAAGATTTCGCTGATTTTTCACAACTTCCTGACGATGTGCTATTGAAAATTGCAGCTAATTTCACTTTACCTAATTTACGTGCGGCTTCACAAGTATGTAAGTCTTGGTGTGATGGGTTGAAACCTTTAAGAGAAGCTATGATGATTCTTAAAAATGGGAAGCGGTTTAAGCATGGGCGTGGAGGGGTGAAACCTGATTTGAATAACGCTCTTGAATCGATCCTTAAAGGTGCGGCTCTTGGGTCTACGATGGCTATGGTGGATGCTGGATTGGGTTATTGTGAAATGGGGAAGAAGGAACAANGGATTGCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379859" ref_strand="+" ref_description="SGN-E379859 [TUS-3-F13]">
      <seq>tgaattcactgtcggtgcagtacttaacagctattgtcagaagggtgacatggagggagctcttggcttcttttctgagttcaaaatgagaggtacacttcctgatttcttgggtttcatgtacttggtgagaggcttatgtgataaagggaggatggaagaatctcgatgcattttgagggagatgttccaatcaaaatctgtcattgatcttcttgatagagttgaaagtgaaattggaacagagtcaattagaagttttctttctctgttgtgtgagcaaggaagcgtccaagaggcagttaatattctcaatgaagtggtgaccatgtttttccctgttagagagaagagagccgattctaaagactcaccctgcaaatacaaaatagatatagactccaggtcatgtgagagtcggaaattggtgaaggcatcacacaactgtcatagtcaagacactcaaataacgcagttcctcgacttcaattcttattattcttgtattgctttattgtgtgcaaaaggggagtatgataatgccaatgaagtggcaaaaattgttactggtttcacgtagagcttatttgtctttagaacaaattgactagcttctctagatatggtctgagcacttctagtgtttcttgccgggaacaagaaccatgcaatcatacaagagctctattggggtggaaaaagaattggaagccttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60980" stop="62571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61280" g_stop="61970" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61971" i_stop="62246" i_length="276">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62247" g_stop="62271" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="717" r_length="26" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E379859" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61280" e_stop="61970"/>
          <exon e_start="62247" e_stop="62271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCACTGTCGGTGCAGTACTTAACAGCTATTGTCAGAAGGGTGACATGGAGGGAGCTCTTGGCTTCTTTTCTGAGTTCAAAATGAGAGGTACACTTCCTGATTTCTTGGGTTTCATGTACTTGGTGAGAGGCTTATGTGATAAAGGGAGGATGGAAGAATCTCGATGCATTTTGAGGGAGATGTTCCAATCAAAATCTGTCATTGATCTTCTTGATAGAGTTGAAAGTGAAATTGGAACAGAGTCAATTAGAAGTTTTCTTTCTCTGTTGTGTGAGCAAGGAAGCGTCCAAGAGGCAGTTAATATTCTCAATGAAGTGGTGACCATGTTTTTCCCTGTTAGAGAGAAGAGAGCCGATTCTAAAGACTCACCCTGCAAATACAAAATAGATATAGACTCCAGGTCATGTGAGAGTCGGAAATTGGTGAAGGCATCACACAACTGTCATAGTCAAGACACTCAAATAACGCAGTTCCTCGACTTCAATTCTTATTATTCTTGTATTGCTTTATTGTGTGCAAAAGGGGAGTATGATAATGCCAATGAAGTGGCAAAAATTGTTACTGGTTTCACGTAGAGCTTATTTGTCTTTAGACAAAATTGACTAGCTTCTCTAGATATGGTCTGAGCACTTCTAGTGTTTCTTGCCGGAACAAAGAACCATGCAATCATACAAGAGCTCTATTGGGTATGTTTTCTTCTTGTTGAGTTATGCCTCAATATAATCTGCATGTTTTTATTGTGACTAGGTAATCAACTTGCAAACTCATATATCCATTTTTCACAAACAGTTCAAAATTATTTTTGTAACTTTGTAGTGGGAGTTTATTCTACTTAGAAAATACTATTTTTCTTTTGATTTCTTCTAATTATATAACATAACATTCCTTGCTGAGTTGCACTTTTTAGATCTAATTCAAGTATTTGAACTATGAGCCAACTACGAGTTTGATATCCAATGCAG-GTGGAAAAAGAATTGGAAGCCTTAC</genome_strand>
        <mrna_strand>TGAATTCACTGTCGGTGCAGTACTTAACAGCTATTGTCAGAAGGGTGACATGGAGGGAGCTCTTGGCTTCTTTTCTGAGTTCAAAATGAGAGGTACACTTCCTGATTTCTTGGGTTTCATGTACTTGGTGAGAGGCTTATGTGATAAAGGGAGGATGGAAGAATCTCGATGCATTTTGAGGGAGATGTTCCAATCAAAATCTGTCATTGATCTTCTTGATAGAGTTGAAAGTGAAATTGGAACAGAGTCAATTAGAAGTTTTCTTTCTCTGTTGTGTGAGCAAGGAAGCGTCCAAGAGGCAGTTAATATTCTCAATGAAGTGGTGACCATGTTTTTCCCTGTTAGAGAGAAGAGAGCCGATTCTAAAGACTCACCCTGCAAATACAAAATAGATATAGACTCCAGGTCATGTGAGAGTCGGAAATTGGTGAAGGCATCACACAACTGTCATAGTCAAGACACTCAAATAACGCAGTTCCTCGACTTCAATTCTTATTATTCTTGTATTGCTTTATTGTGTGCAAAAGGGGAGTATGATAATGCCAATGAAGTGGCAAAAATTGTTACTGGTTTCACGTAGAGCTTATTTGTCTTTAGAACAAATTGACTAGCTTCTCTAGATATGGTCTGAGCACTTCTAGTGTTTCTTGCCGGGAACAAGAACCATGCAATCATACAAGAGCTCTATTGG....................................................................................................................................................................................................................................................................................GGTGGAAAAAGAATTGGAAGCCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209135" ref_strand="+" ref_description="SGN-E209135 [cLEC-38-G18]">
      <seq>tgaattcactgtcggtgcagtacttaacagctattgtcagaagggtgacatggagggagctcttggcttcttttctgagttcaaaatgagaggtacacttcctgatttcttgggtttcatgtacttggtgagaggcttatgtgataaagggaggatggaagaatctcgatgcattttgagggagatgttccaatcaaaatctgtcattgatcttcttgatagagttgaaagtgaaattggaacagagtcaattagaagttttctttctctgttgtgtgagcaaggaagcgtccaagaggcagttaatattctcaatgaagtggtgaccatgtttttccctgttagagagaagagagccgattctaaagactcaccctgcaaatacaaaatagatatagactccaggtcatgtgagagtcggaaattggtgaaggcatcacacaactgtcatagtcaagacactcaaataacgcagttcctcgacttcaattcttattattcttgtattgctttattgtgtgcaaaaggggagtatgataatgccaatgaagtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60980" stop="62134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61280" g_stop="61834" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E209135" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61280" e_stop="61834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCACTGTCGGTGCAGTACTTAACAGCTATTGTCAGAAGGGTGACATGGAGGGAGCTCTTGGCTTCTTTTCTGAGTTCAAAATGAGAGGTACACTTCCTGATTTCTTGGGTTTCATGTACTTGGTGAGAGGCTTATGTGATAAAGGGAGGATGGAAGAATCTCGATGCATTTTGAGGGAGATGTTCCAATCAAAATCTGTCATTGATCTTCTTGATAGAGTTGAAAGTGAAATTGGAACAGAGTCAATTAGAAGTTTTCTTTCTCTGTTGTGTGAGCAAGGAAGCGTCCAAGAGGCAGTTAATATTCTCAATGAAGTGGTGACCATGTTTTTCCCTGTTAGAGAGAAGAGAGCCGATTCTAAAGACTCACCCTGCAAATACAAAATAGATATAGACTCCAGGTCATGTGAGAGTCGGAAATTGGTGAAGGCATCACACAACTGTCATAGTCAAGACACTCAAATAACGCAGTTCCTCGACTTCAATTCTTATTATTCTTGTATTGCTTTATTGTGTGCAAAAGGGGAGTATGATAATGCCAATGAAGTGGC</genome_strand>
        <mrna_strand>TGAATTCACTGTCGGTGCAGTACTTAACAGCTATTGTCAGAAGGGTGACATGGAGGGAGCTCTTGGCTTCTTTTCTGAGTTCAAAATGAGAGGTACACTTCCTGATTTCTTGGGTTTCATGTACTTGGTGAGAGGCTTATGTGATAAAGGGAGGATGGAAGAATCTCGATGCATTTTGAGGGAGATGTTCCAATCAAAATCTGTCATTGATCTTCTTGATAGAGTTGAAAGTGAAATTGGAACAGAGTCAATTAGAAGTTTTCTTTCTCTGTTGTGTGAGCAAGGAAGCGTCCAAGAGGCAGTTAATATTCTCAATGAAGTGGTGACCATGTTTTTCCCTGTTAGAGAGAAGAGAGCCGATTCTAAAGACTCACCCTGCAAATACAAAATAGATATAGACTCCAGGTCATGTGAGAGTCGGAAATTGGTGAAGGCATCACACAACTGTCATAGTCAAGACACTCAAATAACGCAGTTCCTCGACTTCAATTCTTATTATTCTTGTATTGCTTTATTGTGTGCAAAAGGGGAGTATGATAATGCCAATGAAGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721751" ref_strand="+" ref_description="SGN-E721751 [FC15AF11]">
      <seq>aatcggccgaattaaatatatttcatgagaaaaatgggattaatttctaaaaaatcaaaggatggaaatcatgttttagagtcatcagaaggcaaaaaaggatggatgattacattgagaagtccattgaagcctatattaacatccaagaattggaagaacaacaaacatgttgatgatgatgaagaggaacaagagattgcaacaactccaacatatgaggaatcaaagttatcaagaaagtatgtaacatgtccaccacctcctaagaagagaaaaacatcatcaaggtgtaatcatcatgactatagtagtagtaacaataataatagggaattctttcatccaccattagacttggaaagtgtttttatgagcatgcacactttaaattaattatttaccgagccgtgaattcagctattttgcagaaatgcaagataagactgtatacaatagatcatttatgtggtgtgtaatcagctctttgcagaaatacaggacaagactgcatataatagaccttttatgtagtctgacacttctctagatcccgcacatagcgggagcttagtgtaattgttcttttttttcttttacttttcctattttgattaggtttaagttctccctttgttaatttactcagactacttaggtagtagcttttaatcttgtttggtttccacaatttcatgtgtactacacgatttctctataaataaataagatgggattttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="72571" stop="71238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72267" g_stop="71538" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="744" r_length="730" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E721751" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72267" e_stop="71538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATATTTCATGAGAAAAATGGGATTAATTTCTAAAAAATCAAAGGATGGAAATCATGTTTTAGAGTCATCAGAAGGCAAAAAAGGATGGATGATTACATTGAGAAGTCCATTGAAGCCTATATTAACATCCAAGAATTGGAAGAACAACAAACATGTTGATGATGATGAAGAGGAACAAGAGATTGCAACAACTCCAACATATGAGGAATCAAAGTTATCAAGAAAGTATGTAACATGTCCACCACCTCCTAAGAAGAGAAAAACATCATCAAGGTGTAATCATCATGACTATAGTAGTAGTAACAATAATAATAGGGAATTCTTTCATCCACCATTAGACTTGGAAAGTGTTTTTATGAGCATGCACACTTTAAATTAATTATTTACCGAGCCGTGAATTCAGCTATTTTGCAGAAATGCAAGATAAGACTGTATACAATAGATCATTTATGTGGTGTGTAATCAGCTCTTTGCAGAAATACAGGACAAGACCGCATATAATAGACCTTTTATGTAGTCTGACACTTCTCTAGATCCCGCACATAGCGGGAGCTTAGTGTAATTGTTCTTTTTTTTCTTTTACTTTTCCTATTTTGATTAGGTTTAAGTTCTCCCTTTGTTAATTTACTCAGACTACTTAGGTAGTAGCTTTTAATCTTGTTTGGTTTCCACAATTTCATGTGTACTACACGATTTCTCTATAAATAAATAAGATGGGATTTTCACT</genome_strand>
        <mrna_strand>AATATATTTCATGAGAAAAATGGGATTAATTTCTAAAAAATCAAAGGATGGAAATCATGTTTTAGAGTCATCAGAAGGCAAAAAAGGATGGATGATTACATTGAGAAGTCCATTGAAGCCTATATTAACATCCAAGAATTGGAAGAACAACAAACATGTTGATGATGATGAAGAGGAACAAGAGATTGCAACAACTCCAACATATGAGGAATCAAAGTTATCAAGAAAGTATGTAACATGTCCACCACCTCCTAAGAAGAGAAAAACATCATCAAGGTGTAATCATCATGACTATAGTAGTAGTAACAATAATAATAGGGAATTCTTTCATCCACCATTAGACTTGGAAAGTGTTTTTATGAGCATGCACACTTTAAATTAATTATTTACCGAGCCGTGAATTCAGCTATTTTGCAGAAATGCAAGATAAGACTGTATACAATAGATCATTTATGTGGTGTGTAATCAGCTCTTTGCAGAAATACAGGACAAGACTGCATATAATAGACCTTTTATGTAGTCTGACACTTCTCTAGATCCCGCACATAGCGGGAGCTTAGTGTAATTGTTCTTTTTTTTCTTTTACTTTTCCTATTTTGATTAGGTTTAAGTTCTCCCTTTGTTAATTTACTCAGACTACTTAGGTAGTAGCTTTTAATCTTGTTTGGTTTCCACAATTTCATGTGTACTACACGATTTCTCTATAAATAAATAAGATGGGATTTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281144" ref_strand="-" ref_description="SGN-E281144 [cLER-7-J9]">
      <seq>accaataatggaaagtttcaaaaagttcaatgatgaattcatggagaaatatgaagcccccaaaggttattccaggatgtaatagaaaaaagatggttggagcatttattgtatatgtttttaccttgcaactactgcaacttttttcacaaacaaattattgtacacaacttgatctcttctcccctctttttaactttcatctatgtgtttatatatatatatatatatatatatgacttgctagatttaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75813" stop="74962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75513" g_stop="75262" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75261" i_stop="75007" i_length="255">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75006" g_stop="74987" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="272" r_length="20" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E281144" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281144" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75513" e_stop="75262"/>
          <exon e_start="75006" e_stop="74987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTCTCCCCTCTTTTTAACTTTCATCTATGTGTTTATATATATATATATATATATATATGACTTGCTAGATTTACCATGTGGTCTATAGATTTCCTTTTTTTCCCTTCTGCATTTAATTTACTTAAATCAGACCATATCATATTAAAACTTTGTTGATTTTAAGTAGGTGTTTGACCATGTAATTTGGAGCTTTGAGTTTGATGTTTTGATATGAAATTAGTGTATGTATTTAAAATCAAGGAATTAAATTTCAAGTTTATAATTCTAAATATAAGACGACTCATAAATTTATATTTTGTACAATTATTCATGATTTTCAATTTTATAGGAAAAAAAGGGTAAAAGCTC</genome_strand>
        <mrna_strand>ACCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGCCCCCAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACAACTTGATCTCTTCTCCCCTCTTTTTAACTTTCATCTATGTGTTTATATATATATATATATATATATATGACTTGCTAGATTTA...............................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281097" ref_strand="-" ref_description="SGN-E281097 [cLER-7-A22]">
      <seq>catcttgccagctgaagaagacatgccagcaataatggaaagtttcaaaaagttcaatgatgaattcatggagaaatatgaagaccacaaaggttattccaggatgtaatagaaaaaagatggttggagcatttattgtatatgtttttaccttgcaactactgcaacttttttcacaaacaaattattgtacactacttgatctcttctcccctctttttaactttcatctatgtgtttatatatatatatatatatatatatgacttgctagaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75840" stop="74966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75540" g_stop="75267" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="295"/>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E281097" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281097" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75540" e_stop="75267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTCTCCCCTCTTTTTAACTTTCATCTATGTGTTTATATATATATATATATATATATATGACTTGCTAG</genome_strand>
        <mrna_strand>CATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTCTCCCCTCTTTTTAACTTTCATCTATGTGTTTATATATATATATATATATATATATGACTTGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738569" ref_strand="+" ref_description="SGN-E738569 [LC14AF08]">
      <seq>tgatggtttcaacagctgcagaaatgttgtttgtaatttcacagaaggtgcaatgtattccttcccgcaaatacgattgcctcctaaagcaatagagactgcaaataagcttgggaaagctcctgatgttctctattgtctgaggctgttggaagcaactggcatctccaccgtccctggttcaggtttcggtcaaaaggaaggggtgttccatctaaggacaaccatcttgccagctgaagaagacatgccagcaataatggaaagtttcaaaaagttcaatgatgaattcacggagaaatatgaagaccacaaaggttattccaggatgtaatagaaaaaagatggttggagtatttattgtatatgtttttaccttgcaactactgcaacttttttcacaaacaaattattgtacactacttgatctcttctcccctctttttaactttcatttatgtgtttatatatatatatatatatatgacttgctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="76394" stop="74966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76094" g_stop="76048" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76047" i_stop="75972" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.403" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75971" g_stop="75815" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="204" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75561" g_stop="75281" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="485" r_length="281" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="506"/>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E738569" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76094" e_stop="76048"/>
          <exon e_start="75971" e_stop="75815"/>
          <exon e_start="75561" e_stop="75281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAGGCAAGTCACCGGTTAGCTTTTTATTAAGTGAAAAGCCAAATGAGCTCCCATTAACTTTGTGAGAAAATATTTTCAGGTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGGGTGAGTTTTTTATTCTATTCATATTGCTACCTCCATTCCAAAACCTTTTCAGTGCCCTTATATGCATTTCCGCTGACTCTCACCTATCTGAAGTTAGATTAATATTGGTATTACCGCGTAGTTGACAGTTGAAACGCCTATAGTGTTAGTACATTGTAACGCGTTCATTTCCATCTCCCTCTCCTCTCAAGTACTTTGTAACGCGTTAAAATAGGTTATTGTGGGATTAATTGTATGGTTGTGAACAATGTAGGGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTCTCCCCTCTTTTTAACTTTCATCTATGTGTTTATATATATATATATATATAT</genome_strand>
        <mrna_strand>TGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAG............................................................................GTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG.............................................................................................................................................................................................................................................................GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCACGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGTATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTCTCCCCTCTTTTTAACTTTCATTTATGTGTTTATATATATATATATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215900" ref_strand="+" ref_description="SGN-E215900 [cLEL-15-D18](-)">
      <seq>gcctcctaaagcaataaagactgcaaataagcttgggaaagctcctgatgttctctattgtctaaggctgttgaaagcaactggcatctccaccgtccctggttcaggtttcggtcaaaaggaaggggtgttccatctaaggacaaccatcttgccagctgaagaagacatgccagcaataatggaaagtttcaaaaagttcaatgatgaattcatggagaaatatgaagaccacaaaggttattccaggatgtaatagaaaaaagatggttggagcatttattgtatatgtttttaccttgcaactactgcaacttttttcacaaacaaattattgtacactacttgatctcttctcccctctttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="76240" stop="75018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75940" g_stop="75815" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75561" g_stop="75318" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="370" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="389"/>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E215900" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75940" e_stop="75815"/>
          <exon e_start="75561" e_stop="75318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGGGTGAGTTTTTTATTCTATTCATATTGCTACCTCCATTCCAAAACCTTTTCAGTGCCCTTATATGCATTTCCGCTGACTCTCACCTATCTGAAGTTAGATTAATATTGGTATTACCGCGTAGTTGACAGTTGAAACGCCTATAGTGTTAGTACATTGTAACGCGTTCATTTCCATCTCCCTCTCCTCTCAAGTACTTTGTAACGCGTTAAAATAGGTTATTGTGGGATTAATTGTATGGTTGTGAACAATGTAGGGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTCTCCCCTCTTTTTAA</genome_strand>
        <mrna_strand>GCCTCCTAAAGCAATAAAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTAAGGCTGTTGAAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG.............................................................................................................................................................................................................................................................GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTCTCCCCTCTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215580" ref_strand="+" ref_description="SGN-E215580 [cLEL-15-D18](-)">
      <seq>ccgtccctggttcaggtttcggtcaaaaggaaggggtgttccatctaaggacaaccatcttgccagctgaagaagacatgccagcaataatggaaagtttcaaaaagttcaatgatgaattcatggagaaatatgaagaccacaaaggttattccaggatgtaatagaaaaaagatggttggagcatttattgtatatgtttttaccttgcaactactgcaacttttttcacaaacaaattattgtacactacttgatctcttctcccctctttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="76148" stop="75018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75848" g_stop="75815" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75561" g_stop="75318" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="278" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="279" polyA_stop="297"/>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E215580" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75848" e_stop="75815"/>
          <exon e_start="75561" e_stop="75318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGGGTGAGTTTTTTATTCTATTCATATTGCTACCTCCATTCCAAAACCTTTTCAGTGCCCTTATATGCATTTCCGCTGACTCTCACCTATCTGAAGTTAGATTAATATTGGTATTACCGCGTAGTTGACAGTTGAAACGCCTATAGTGTTAGTACATTGTAACGCGTTCATTTCCATCTCCCTCTCCTCTCAAGTACTTTGTAACGCGTTAAAATAGGTTATTGTGGGATTAATTGTATGGTTGTGAACAATGTAGGGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTCTCCCCTCTTTTTAA</genome_strand>
        <mrna_strand>CCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG.............................................................................................................................................................................................................................................................GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTCTCCCCTCTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732237" ref_strand="+" ref_description="SGN-E732237 [LB01CE10]">
      <seq>cgtatgggtatcctcgagtcattaaggaagagggcacacatgatgactgatggtttcaacagctgcagaaatgttgtttgtaatttcacagaaggtgcaatgtattccttcccgcaaatacgattgcctcctaaagcaatagagactgcaaataagcttgggaaagctcctgatgttctctattgtctgaggctgttggaagcaactggcatctccaccgtccctggttcaggtttcggtcaaaaggaaggggtgttccatctaaggacaaccatcttgccagctgaagaagacatgccagcaataatggaaagtttcaaaaagttcaatgatgaattcatggagaaatatgaagaccacaaaggttattccaggatgtaatagaaaaaagatggttggagtatttattgtatatgtttttaccttgcaactactgcaacttttttcacaaacaaattattgtacactacttgatctcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="76440" stop="75032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76139" g_stop="76048" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="94" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76047" i_stop="75972" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.403" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75971" g_stop="75815" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="251" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75561" g_stop="75332" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="481" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="491"/>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E732237" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76139" e_stop="76048"/>
          <exon e_start="75971" e_stop="75815"/>
          <exon e_start="75561" e_stop="75332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAGGCAAGTCACCGGTTAGCTTTTTATTAAGTGAAAAGCCAAATGAGCTCCCATTAACTTTGTGAGAAAATATTTTCAGGTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGGGTGAGTTTTTTATTCTATTCATATTGCTACCTCCATTCCAAAACCTTTTCAGTGCCCTTATATGCATTTCCGCTGACTCTCACCTATCTGAAGTTAGATTAATATTGGTATTACCGCGTAGTTGACAGTTGAAACGCCTATAGTGTTAGTACATTGTAACGCGTTCATTTCCATCTCCCTCTCCTCTCAAGTACTTTGTAACGCGTTAAAATAGGTTATTGTGGGATTAATTGTATGGTTGTGAACAATGTAGGGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTC</genome_strand>
        <mrna_strand>TATGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAG............................................................................GTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG.............................................................................................................................................................................................................................................................GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGTATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217823" ref_strand="+" ref_description="SGN-E217823 [cLEL-23-O23](-)">
      <seq>aatttcacagaaggtgcaatgtattccttcccgcaaatacgattgcctcctaaagcaatagagactgcaaataagcttgggaaagctcctgatgttctctattgtctgaggctgttggaagcaactggcatctccaccgtccctggttcaggtttcggtcaaaaggaaggggtgttccatctaaggacaaccatcttgccagctgaagaagacatgccagcaataatggaaagtttcagaaagttcaatgatgaattcatggagaaatatgaagaccacaaaggttattccaggatgtaatagaaaaaagatggttggagcatttattgtatatgtttttaccttgcaactactgcaacttttttcgcatacaaattattgtacactaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="76273" stop="75044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76060" g_stop="76048" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76047" i_stop="75972" i_length="76">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.403" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75971" g_stop="75815" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="170" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75561" g_stop="75341" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="391" r_length="221" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E217823" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76060" e_stop="76048"/>
          <exon e_start="75971" e_stop="75815"/>
          <exon e_start="75561" e_stop="75341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCACAGAAGGCAAGTCACCGGTTAGCTTTTTATTAAGTGAAAAGCCAAATGAGCTCCCATTAACTTTGTGAGAAAATATTTTCAGGTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGGGTGAGTTTTTTATTCTATTCATATTGCTACCTCCATTCCAAAACCTTTTCAGTGCCCTTATATGCATTTCCGCTGACTCTCACCTATCTGAAGTTAGATTAATATTGGTATTACCGCGTAGTTGACAGTTGAAACGCCTATAGTGTTAGTACATTGTAACGCGTTCATTTCCATCTCCCTCTCCTCTCAAGTACTTTGTAACGCGTTAAAATAGGTTATTGTGGGATTAATTGTATGGTTGTGAACAATGTAGGGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTT</genome_strand>
        <mrna_strand>AATTTCACAGAAG............................................................................GTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG.............................................................................................................................................................................................................................................................GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAGAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCGCATACAAATTATTGTACACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E218323" ref_strand="+" ref_description="SGN-E218323 [cLEL-23-O23](-)">
      <seq>taagcttgggaaagctcctgatgttctctattgtctgaggctgttggaagcaactggcatctccaccgtccctggttcaggtttcggtcaaaaggaaggggtgttccatctaaggccaaccatcttgccagcttaagaagacatgccagcaataatggaaagtttcaaaaagttcaatgatgaattcatggaggaatatgaagcccacaaaggttattccaggatgtaatagaaaaaagatggttggagcatttattgtatatgtttttaccttgcaactactgcaacttttttcgcaaacaaattattgtacactaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="76213" stop="75044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75913" g_stop="75815" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75561" g_stop="75341" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="320" r_length="221" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E218323" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75913" e_stop="75815"/>
          <exon e_start="75561" e_stop="75341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGGGTGAGTTTTTTATTCTATTCATATTGCTACCTCCATTCCAAAACCTTTTCAGTGCCCTTATATGCATTTCCGCTGACTCTCACCTATCTGAAGTTAGATTAATATTGGTATTACCGCGTAGTTGACAGTTGAAACGCCTATAGTGTTAGTACATTGTAACGCGTTCATTTCCATCTCCCTCTCCTCTCAAGTACTTTGTAACGCGTTAAAATAGGTTATTGTGGGATTAATTGTATGGTTGTGAACAATGTAGGGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTT</genome_strand>
        <mrna_strand>TAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG.............................................................................................................................................................................................................................................................GGTGTTCCATCTAAGGCCAACCATCTTGCCAGCTTAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGGAATATGAAGCCCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCGCAAACAAATTATTGTACACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734837" ref_strand="+" ref_description="SGN-E734837 [LB13CH08]">
      <seq>gtttcacactgtctccaaaggatattggggtgaatgtggacagcgtggaggatactttgagatgaccaacattcctcccaaggctgttgaagaaatatacaaggttgcttcaatttcactcagtccaaatgtacctggacagatatttatggggctcatggtgaacccccctaaacctggagatatctcatatgaccaatatgtcagagagagtaagggtatcctcgagtcattaaggaagagggcacacatgatgactgatggtttcaacagctgcagaaatgttgtttgtaatttcacagaaggtgcaatgtattccttcccgcaaatacgattgcctcctaaagcaatagagactgcaaataagcttgggaaagctcctgatgttctctattgtctgaggctgttggaagcaactggcatctccaccgtccctggttcaggtttcggtcaaaaggaaggggtgttccatctaaggacaaccatcttgccagctgaagaagacatgccagcaataatggaaagtttcaaaaagttcaatgatgaattcatggagaaatatgaagaccacaaaggttattccaggatgtaatagaaaaaagatggttggagtatttattgtatatgtttttaccttgcaactactgcaacttttttcacaaacaaattattgtacactaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="78824" stop="75044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78524" g_stop="78443" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77083" g_stop="77018" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="148" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76903" g_stop="76839" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="213" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76838" i_stop="76140" i_length="699">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76139" g_stop="76048" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="305" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76047" i_stop="75972" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.403" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75971" g_stop="75815" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="462" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75561" g_stop="75352" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="672" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="680" polyA_stop="697"/>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E734837" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78524" e_stop="78443"/>
          <exon e_start="77083" e_stop="77018"/>
          <exon e_start="76903" e_stop="76839"/>
          <exon e_start="76139" e_stop="76048"/>
          <exon e_start="75971" e_stop="75815"/>
          <exon e_start="75561" e_stop="75352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAGGTTTGTATTTTGCTTCCATTAAAACTGTAGGGATACGAATATATTTGGTAGTTCTTGCTTATTGTGAATTGCTTATTCTCGGTGTCACATTGTATGTCATGGTTTGAATTGGAAAAACTCCAATAGTGATAGTGAAAAGTATAGTGATCTCATGACACGTTTTATTGGAGTGGTGCTATAATAGTCTTTTCTTTGTAGTGCTTATAAATGACTTATTTCACATTTTGGGGAAGTCTTAAAAGGCACATTCTCCAATGTGGATTGTGGATTAGCTAAGAACATTGGCTAAAAAAAGAACAGGAAGGGAACAGATGATCCATATATGAGATATCAACTAGTTGGAATTAAGACTTTAGTTATTGTTGTTTCTTTTGTGTTAGGTTCAGTGTTTGGCACGAGCTTTTCAACTTTAGTTAAAGACTTGTCTGCCACTGTTAAGTTAAGTTTGATAATTAGAATTTCCTTGGCTCTAGATAAACCCGAAGTCTTGAAATAGAAATTACTGGTACTGTTACCAAAATGGCCCGAATAGGGCAGAGCTGAGCTTTCAAACTCTAGTTAAAGACTTGTATGCCACTGTTAAGTTAAGTTTGATAATTAGGATTTCCCTGGATCTAGATAAACCAATGTCTTGAAATAGAAATTACTAGTACTGTTACCAAAATGGCCTGAATAGGGCAGAGTTGATAGAGATTAGAGATGATTCAAGTAGCCATAACTAGTTATGATTGAGAAGAGGTTCGTCGGTTGATTAGAATAATTTGAAAGAAATCTAGGTTGGATCTTGTAAGCGGACTATTTTTCGTACTATTCATATAGTTTAGTTTAGTTTTTTCTAAGAAACTGTTCAGTCCATCATCAGTTGTTTGAAGGGAGATTGGACTCTTTAGATCGTCTGGGGCAATCCTCACCCCTTGAGCTAACTTTTCCGATTGAGTTAGGCTCAAGGTTCATTTCTTTACCATGGTACCAGAGGCAGGGTCTCCCCAATTATTGTTTACAACATGTTGAGCCCCCATCTCATAATGTGCACGCTCCAGATGTCCAGTCCTCGGCGTGCAGGGGAAGGGGGAGGCTGTTGCGTCCCACATCGGTTGAGGATGGGAGATTGGACTCCTTATGTGGTCTTGGGCAATCCTCACTTCTTGAACTAGCTTTTACGGTTGAGTTAGGTTCAAGGTCCATTTTTTTAAAATTAAAAACTATTAACAATGGTGTATGTTATGATACATTGAAATTTATAGTCCACAATGTAAAATTTTCTTGGTTTTTGCCTTTATACACCTAACACAGTTTTTCTGGTATTGAACTCTTATTTACCTATGACAAAACCTTTCCTTTCCGCATTTGATGTTCCAGGCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTTGTAAGTCAACTTTTACTTGTCTTTTCCGAGATAATATTATGTACTTCATATTAGGAACATCATATTTCAATACCATTCGACCAAGTTAGTGATGTCCTGTTCTTTTACTTACAGATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAGGTATGACACTAGCCCATGAAATTCTTGCAACTCTTTTTAAGAAGTGAGAAATTGGTGCGACAAAAAGAAAGAACTTTTTTCTTTTCGATGGGGTTTTGGATATGGACTTCGGAAATATTTGTCACTGAGTATCTTCGATCTTTGAACTAGTGAGTTAAAAGAAAGCTTAACGTACATCACAGGTTCGATTTTCGAACGTGCAGTAGATAAAAGCCTGATATTAAAGTAGAGAAGGGTAAAACGGTAGGTTCATTATTTATCGAGTTTCATACCTTGTGCTGCTACAGGCCCTTGGGAATTTCTCGGTAATTAAAACAAAGAAGAAGAAAGAAAGCTTAAAGCTACAAATACATCTATTCTTTGTCACCTATTAGTATTAGATATTTAAATAAGCGAAACCATTAGAACTTTTGTGGTCGTTTAAACATTATTAAAAGAATGCACTCTTCTCCAACATAACTCCCAGAACAGGACATTTCTCCACACATCTAAATCGTAATTCACTGTCTTATCCTTTTTTTCTTCTCTTTTCGGAACTTTTCTGGATTTATATCAATATCTTTCTACCGTGATCAAGGATTTGAATTCACTTATAAATCTCGTAGTTTCTTTTTCTCTCTTTTTATAATTTTCTGTGATAAAACGCCCCCACAGTCTCTGGTTCTTTAATGATGAATATTAACTTTATTCTGATTGCAGTAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAGGCAAGTCACCGGTTAGCTTTTTATTAAGTGAAAAGCCAAATGAGCTCCCATTAACTTTGTGAGAAAATATTTTCAGGTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGGGTGAGTTTTTTATTCTATTCATATTGCTACCTCCATTCCAAAACCTTTTCAGTGCCCTTATATGCATTTCCGCTGACTCTCACCTATCTGAAGTTAGATTAATATTGGTATTACCGCGTAGTTGACAGTTGAAACGCCTATAGTGTTAGTACATTGTAACGCGTTCATTTCCATCTCCCTCTCCTCTCAAGTACTTTGTAACGCGTTAAAATAGGTTATTGTGGGATTAATTGTATGGTTGTGAACAATGTAGGGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATT</genome_strand>
        <mrna_strand>GTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT..................................................................................................................ATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAG............................................................................GTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG.............................................................................................................................................................................................................................................................GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGTATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732224" ref_strand="+" ref_description="SGN-E732224 [LB01CD09]">
      <seq>cggcacgaggattcgatgttccaggctgttgaagaaatatacaaggttgcttcaatttcactcagtccaaatgtacctggacagatatttatggggctcatggtgaacccccctaaacctggagatatctcatatgaccaatatgtcagagagagtaagggtatcctcgagtcattaaggaagagggcacacatgatgactgatggtttcaacagctgcagaaatgttgtttgtaatttcacagaaggtgcaatgtattccttcccgcaaatacgattgcctcctaaagcaatagagactgcaaataagcttgggaaagctcctgatgttctctattgtctgaggctgttggaagcaactggcatctccaccgtccctggttcaggtttcggtcaaaaggaaggggtgttccatctaaggacaaccatcttgccagctgaagaagacatgccagcaataatggaaagtttcaaaaagttcaatgatgaattcatggagaaatatgaagaccacaaaggttattccaggatgtaatagaaaaaagatggttggagtatttattgtatatgtttttaccttgcaactactgcaacttttttcacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="77399" stop="75057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77083" g_stop="77018" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="90" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76903" g_stop="76839" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="155" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76838" i_stop="76140" i_length="699">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76139" g_stop="76048" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="247" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76047" i_stop="75972" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.403" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75971" g_stop="75815" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="404" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75561" g_stop="75352" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="614" r_length="210" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E732224" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77083" e_stop="77018"/>
          <exon e_start="76903" e_stop="76839"/>
          <exon e_start="76139" e_stop="76048"/>
          <exon e_start="75971" e_stop="75815"/>
          <exon e_start="75561" e_stop="75352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTTGTAAGTCAACTTTTACTTGTCTTTTCCGAGATAATATTATGTACTTCATATTAGGAACATCATATTTCAATACCATTCGACCAAGTTAGTGATGTCCTGTTCTTTTACTTACAGATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAGGTATGACACTAGCCCATGAAATTCTTGCAACTCTTTTTAAGAAGTGAGAAATTGGTGCGACAAAAAGAAAGAACTTTTTTCTTTTCGATGGGGTTTTGGATATGGACTTCGGAAATATTTGTCACTGAGTATCTTCGATCTTTGAACTAGTGAGTTAAAAGAAAGCTTAACGTACATCACAGGTTCGATTTTCGAACGTGCAGTAGATAAAAGCCTGATATTAAAGTAGAGAAGGGTAAAACGGTAGGTTCATTATTTATCGAGTTTCATACCTTGTGCTGCTACAGGCCCTTGGGAATTTCTCGGTAATTAAAACAAAGAAGAAGAAAGAAAGCTTAAAGCTACAAATACATCTATTCTTTGTCACCTATTAGTATTAGATATTTAAATAAGCGAAACCATTAGAACTTTTGTGGTCGTTTAAACATTATTAAAAGAATGCACTCTTCTCCAACATAACTCCCAGAACAGGACATTTCTCCACACATCTAAATCGTAATTCACTGTCTTATCCTTTTTTTCTTCTCTTTTCGGAACTTTTCTGGATTTATATCAATATCTTTCTACCGTGATCAAGGATTTGAATTCACTTATAAATCTCGTAGTTTCTTTTTCTCTCTTTTTATAATTTTCTGTGATAAAACGCCCCCACAGTCTCTGGTTCTTTAATGATGAATATTAACTTTATTCTGATTGCAGTAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAGGCAAGTCACCGGTTAGCTTTTTATTAAGTGAAAAGCCAAATGAGCTCCCATTAACTTTGTGAGAAAATATTTTCAGGTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGGGTGAGTTTTTTATTCTATTCATATTGCTACCTCCATTCCAAAACCTTTTCAGTGCCCTTATATGCATTTCCGCTGACTCTCACCTATCTGAAGTTAGATTAATATTGGTATTACCGCGTAGTTGACAGTTGAAACGCCTATAGTGTTAGTACATTGTAACGCGTTCATTTCCATCTCCCTCTCCTCTCAAGTACTTTGTAACGCGTTAAAATAGGTTATTGTGGGATTAATTGTATGGTTGTGAACAATGTAGGGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATT</genome_strand>
        <mrna_strand>GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT..................................................................................................................ATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAG............................................................................GTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG.............................................................................................................................................................................................................................................................GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGTATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285807" ref_strand="-" ref_description="SGN-E285807 [cLES-5-F17]">
      <seq>ccccctaaccctggagatatctcatatgaccaatatgtcagagagagtaagggtatcctcgagtcattaaggaagagggcacacatgatgactgatggtttcaacagctgcagaaatgttgtttgtaatttcacagaaggtgcaatgtattccttcccgcaaatacgattgcctcctaaagcaatagagactgcaaataagcttgggaaagctcctgatgttctctattgtctgaggctgttggaagcaactggcatctccaccgtccctggttcaggtttcggtcaaaaggaaggggtgttccatctaaggacaaccatcttgccagctgaagaagacatgccagcaataatggaaagtttcaaaaagttcaatgatgaattcatggagaaatatgaagaccacaaaggttattccaggatgtaatagaaaaaagatggttggagcatttattgtatatgtttttaccttgcaactactgcaacttttttcacaaacaaattattgtacactaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="77185" stop="75044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76885" g_stop="76839" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76838" i_stop="76140" i_length="699">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76139" g_stop="76048" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="139" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76047" i_stop="75972" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.403" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75971" g_stop="75815" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="296" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75561" g_stop="75352" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="506" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E285807" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285807" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76885" e_stop="76839"/>
          <exon e_start="76139" e_stop="76048"/>
          <exon e_start="75971" e_stop="75815"/>
          <exon e_start="75561" e_stop="75352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAGGTATGACACTAGCCCATGAAATTCTTGCAACTCTTTTTAAGAAGTGAGAAATTGGTGCGACAAAAAGAAAGAACTTTTTTCTTTTCGATGGGGTTTTGGATATGGACTTCGGAAATATTTGTCACTGAGTATCTTCGATCTTTGAACTAGTGAGTTAAAAGAAAGCTTAACGTACATCACAGGTTCGATTTTCGAACGTGCAGTAGATAAAAGCCTGATATTAAAGTAGAGAAGGGTAAAACGGTAGGTTCATTATTTATCGAGTTTCATACCTTGTGCTGCTACAGGCCCTTGGGAATTTCTCGGTAATTAAAACAAAGAAGAAGAAAGAAAGCTTAAAGCTACAAATACATCTATTCTTTGTCACCTATTAGTATTAGATATTTAAATAAGCGAAACCATTAGAACTTTTGTGGTCGTTTAAACATTATTAAAAGAATGCACTCTTCTCCAACATAACTCCCAGAACAGGACATTTCTCCACACATCTAAATCGTAATTCACTGTCTTATCCTTTTTTTCTTCTCTTTTCGGAACTTTTCTGGATTTATATCAATATCTTTCTACCGTGATCAAGGATTTGAATTCACTTATAAATCTCGTAGTTTCTTTTTCTCTCTTTTTATAATTTTCTGTGATAAAACGCCCCCACAGTCTCTGGTTCTTTAATGATGAATATTAACTTTATTCTGATTGCAGTAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAGGCAAGTCACCGGTTAGCTTTTTATTAAGTGAAAAGCCAAATGAGCTCCCATTAACTTTGTGAGAAAATATTTTCAGGTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGGGTGAGTTTTTTATTCTATTCATATTGCTACCTCCATTCCAAAACCTTTTCAGTGCCCTTATATGCATTTCCGCTGACTCTCACCTATCTGAAGTTAGATTAATATTGGTATTACCGCGTAGTTGACAGTTGAAACGCCTATAGTGTTAGTACATTGTAACGCGTTCATTTCCATCTCCCTCTCCTCTCAAGTACTTTGTAACGCGTTAAAATAGGTTATTGTGGGATTAATTGTATGGTTGTGAACAATGTAGGGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATT</genome_strand>
        <mrna_strand>CCCCCTAACCCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAG............................................................................GTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG.............................................................................................................................................................................................................................................................GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224671" ref_strand="+" ref_description="SGN-E224671 [cLEL-27-F8](-)">
      <seq>gctgcagaaatgttgtttgtaatttcacagaaggtgcaatgtattccttcccgcaaatacgattgcctcctaaagcaatagagactgcaaataagcttgggaaagctcctgatgttctctattgtctgaggctgttggaagcaactggcatctccaccgtccctggttcaggtttcggtcaaaaggaaggggtgttccatctaaggacaaccatcttgccagctgaagaagacatgccagcaataatggaaagtttcaaaaagttcaatgatgaattcatggagaaatatgaagaccacaaaggttattccaggatgtaatagaaaaaagatggttggagcatttattgtatatgtttttaccttgcaactactgcaacttttttcacaaacaaattattgtacnctncttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="76380" stop="75039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76080" g_stop="76048" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76047" i_stop="75972" i_length="76">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.403" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75971" g_stop="75815" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="190" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75561" g_stop="75352" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="400" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="429"/>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E224671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76080" e_stop="76048"/>
          <exon e_start="75971" e_stop="75815"/>
          <exon e_start="75561" e_stop="75352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCAGAAATGTTGTTTGTAATTTCACAGAAGGCAAGTCACCGGTTAGCTTTTTATTAAGTGAAAAGCCAAATGAGCTCCCATTAACTTTGTGAGAAAATATTTTCAGGTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGGGTGAGTTTTTTATTCTATTCATATTGCTACCTCCATTCCAAAACCTTTTCAGTGCCCTTATATGCATTTCCGCTGACTCTCACCTATCTGAAGTTAGATTAATATTGGTATTACCGCGTAGTTGACAGTTGAAACGCCTATAGTGTTAGTACATTGTAACGCGTTCATTTCCATCTCCCTCTCCTCTCAAGTACTTTGTAACGCGTTAAAATAGGTTATTGTGGGATTAATTGTATGGTTGTGAACAATGTAGGGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATT</genome_strand>
        <mrna_strand>GCTGCAGAAATGTTGTTTGTAATTTCACAGAAG............................................................................GTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG.............................................................................................................................................................................................................................................................GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224595" ref_strand="+" ref_description="SGN-E224595 [cLEL-27-F8](-)">
      <seq>tgcaatgtattccttcccgcaaatacgattgcctcctaaagcaatagagactgcaaataagcttgggaaagctcctgatgttctctattgtctgaggctgttggaagcaactggcatctccaccgtccctggttcaggtttcggtcaaaaggaaggggtgttccatctaaggacaaccatcttgccagctgaagaagacatgccagcaataatggaaagtttcaaaaagttcaatgatgaattcatggagaaatatgaagaccacaaaggttattccaggatgtaatagaaaaaagatggttggagcatttattgtatatgtttttaccttgcaactactgcaacttttttcacaaacaaattattgtacactacttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="76270" stop="75039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75970" g_stop="75815" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75561" g_stop="75352" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="366" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="395"/>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E224595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75970" e_stop="75815"/>
          <exon e_start="75561" e_stop="75352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGGGTGAGTTTTTTATTCTATTCATATTGCTACCTCCATTCCAAAACCTTTTCAGTGCCCTTATATGCATTTCCGCTGACTCTCACCTATCTGAAGTTAGATTAATATTGGTATTACCGCGTAGTTGACAGTTGAAACGCCTATAGTGTTAGTACATTGTAACGCGTTCATTTCCATCTCCCTCTCCTCTCAAGTACTTTGTAACGCGTTAAAATAGGTTATTGTGGGATTAATTGTATGGTTGTGAACAATGTAGGGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATT</genome_strand>
        <mrna_strand>TGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG.............................................................................................................................................................................................................................................................GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284122" ref_strand="+" ref_description="SGN-E284122 [cLER-13-N17]">
      <seq>gatattggggtgaatgtggacagcgtggaggatactttgagatgaccaacattcctcccaaggctgttgaagaaatatacaaggttgcttcaatttcactcagtccaaatgtacctggacagatatttatggggctcatggtgaacccccctaaacctggagatatctcatatgaccaatatgtcagagagagtaagggtatcctcgagtcattaaggaagagggcacacatgatgactgatggtttcaacagctgcagaaatgttgtttgtaatttcacagaaggtgcaatgtattccttcccgcaaatacgattgcctcctaaagcaatagagactgcaaataagcttgggaaagctcctgatgttctctattgtctgaggctgttggaagcaactggcatctccaccgtccctggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="78804" stop="75537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78504" g_stop="78443" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77083" g_stop="77018" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="128" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76903" g_stop="76839" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="193" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76838" i_stop="76140" i_length="699">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76139" g_stop="76048" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="285" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76047" i_stop="75972" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.403" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75971" g_stop="75837" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="420" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E284122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78504" e_stop="78443"/>
          <exon e_start="77083" e_stop="77018"/>
          <exon e_start="76903" e_stop="76839"/>
          <exon e_start="76139" e_stop="76048"/>
          <exon e_start="75971" e_stop="75837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAGGTTTGTATTTTGCTTCCATTAAAACTGTAGGGATACGAATATATTTGGTAGTTCTTGCTTATTGTGAATTGCTTATTCTCGGTGTCACATTGTATGTCATGGTTTGAATTGGAAAAACTCCAATAGTGATAGTGAAAAGTATAGTGATCTCATGACACGTTTTATTGGAGTGGTGCTATAATAGTCTTTTCTTTGTAGTGCTTATAAATGACTTATTTCACATTTTGGGGAAGTCTTAAAAGGCACATTCTCCAATGTGGATTGTGGATTAGCTAAGAACATTGGCTAAAAAAAGAACAGGAAGGGAACAGATGATCCATATATGAGATATCAACTAGTTGGAATTAAGACTTTAGTTATTGTTGTTTCTTTTGTGTTAGGTTCAGTGTTTGGCACGAGCTTTTCAACTTTAGTTAAAGACTTGTCTGCCACTGTTAAGTTAAGTTTGATAATTAGAATTTCCTTGGCTCTAGATAAACCCGAAGTCTTGAAATAGAAATTACTGGTACTGTTACCAAAATGGCCCGAATAGGGCAGAGCTGAGCTTTCAAACTCTAGTTAAAGACTTGTATGCCACTGTTAAGTTAAGTTTGATAATTAGGATTTCCCTGGATCTAGATAAACCAATGTCTTGAAATAGAAATTACTAGTACTGTTACCAAAATGGCCTGAATAGGGCAGAGTTGATAGAGATTAGAGATGATTCAAGTAGCCATAACTAGTTATGATTGAGAAGAGGTTCGTCGGTTGATTAGAATAATTTGAAAGAAATCTAGGTTGGATCTTGTAAGCGGACTATTTTTCGTACTATTCATATAGTTTAGTTTAGTTTTTTCTAAGAAACTGTTCAGTCCATCATCAGTTGTTTGAAGGGAGATTGGACTCTTTAGATCGTCTGGGGCAATCCTCACCCCTTGAGCTAACTTTTCCGATTGAGTTAGGCTCAAGGTTCATTTCTTTACCATGGTACCAGAGGCAGGGTCTCCCCAATTATTGTTTACAACATGTTGAGCCCCCATCTCATAATGTGCACGCTCCAGATGTCCAGTCCTCGGCGTGCAGGGGAAGGGGGAGGCTGTTGCGTCCCACATCGGTTGAGGATGGGAGATTGGACTCCTTATGTGGTCTTGGGCAATCCTCACTTCTTGAACTAGCTTTTACGGTTGAGTTAGGTTCAAGGTCCATTTTTTTAAAATTAAAAACTATTAACAATGGTGTATGTTATGATACATTGAAATTTATAGTCCACAATGTAAAATTTTCTTGGTTTTTGCCTTTATACACCTAACACAGTTTTTCTGGTATTGAACTCTTATTTACCTATGACAAAACCTTTCCTTTCCGCATTTGATGTTCCAGGCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTTGTAAGTCAACTTTTACTTGTCTTTTCCGAGATAATATTATGTACTTCATATTAGGAACATCATATTTCAATACCATTCGACCAAGTTAGTGATGTCCTGTTCTTTTACTTACAGATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAGGTATGACACTAGCCCATGAAATTCTTGCAACTCTTTTTAAGAAGTGAGAAATTGGTGCGACAAAAAGAAAGAACTTTTTTCTTTTCGATGGGGTTTTGGATATGGACTTCGGAAATATTTGTCACTGAGTATCTTCGATCTTTGAACTAGTGAGTTAAAAGAAAGCTTAACGTACATCACAGGTTCGATTTTCGAACGTGCAGTAGATAAAAGCCTGATATTAAAGTAGAGAAGGGTAAAACGGTAGGTTCATTATTTATCGAGTTTCATACCTTGTGCTGCTACAGGCCCTTGGGAATTTCTCGGTAATTAAAACAAAGAAGAAGAAAGAAAGCTTAAAGCTACAAATACATCTATTCTTTGTCACCTATTAGTATTAGATATTTAAATAAGCGAAACCATTAGAACTTTTGTGGTCGTTTAAACATTATTAAAAGAATGCACTCTTCTCCAACATAACTCCCAGAACAGGACATTTCTCCACACATCTAAATCGTAATTCACTGTCTTATCCTTTTTTTCTTCTCTTTTCGGAACTTTTCTGGATTTATATCAATATCTTTCTACCGTGATCAAGGATTTGAATTCACTTATAAATCTCGTAGTTTCTTTTTCTCTCTTTTTATAATTTTCTGTGATAAAACGCCCCCACAGTCTCTGGTTCTTTAATGATGAATATTAACTTTATTCTGATTGCAGTAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAGGCAAGTCACCGGTTAGCTTTTTATTAAGTGAAAAGCCAAATGAGCTCCCATTAACTTTGTGAGAAAATATTTTCAGGTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTT</genome_strand>
        <mrna_strand>GATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT..................................................................................................................ATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAG............................................................................GTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272787" ref_strand="+" ref_description="SGN-E272787 [cLEM-21-J2]">
      <seq>aattctgtcaccaagaaaatttagtattacttggagacgaagtttatcagcaaaacatttaccaagatgagcgccccttcataagtgcaagaaaggttttattggatatgggactaccattaagcaaggaggttcagcttgtctcgtttcacactgtctccaaaggatattggggtgaatgtggacagcgtggaggatactttgagatgaccaacattcctcccaaggctgttgaagaaatatacaaggttgcttcaatttcactcagtccaaatgtacctggacagatatttatggggctcatggtgaacccccctaaacctggagatatctcatatgaccaatatgtcagagagagtaagggtatcctcgagtcattaaggaagagggcacacatgatgactgatggtttcaacagctgcagaaatgttgtttgtaatttcacagaaggtgcaatgtattccttcccgcaaatacgattgcctcctaaagcaatagagactgcaaataagcttgggaaagctcctgatgttctctattgtctgaggctgttggaagcaactggcatctccaccgtccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="79062" stop="75540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78762" g_stop="78668" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78667" i_stop="78575" i_length="93">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78574" g_stop="78443" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="227" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77083" g_stop="77018" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="293" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76903" g_stop="76839" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="358" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76838" i_stop="76140" i_length="699">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76139" g_stop="76048" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="450" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76047" i_stop="75972" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.403" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75971" g_stop="75840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="582" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E272787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78762" e_stop="78668"/>
          <exon e_start="78574" e_stop="78443"/>
          <exon e_start="77083" e_stop="77018"/>
          <exon e_start="76903" e_stop="76839"/>
          <exon e_start="76139" e_stop="76048"/>
          <exon e_start="75971" e_stop="75840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAGGTTTGTATTTTGCTTCCATTAAAACTGTAGGGATACGAATATATTTGGTAGTTCTTGCTTATTGTGAATTGCTTATTCTCGGTGTCACATTGTATGTCATGGTTTGAATTGGAAAAACTCCAATAGTGATAGTGAAAAGTATAGTGATCTCATGACACGTTTTATTGGAGTGGTGCTATAATAGTCTTTTCTTTGTAGTGCTTATAAATGACTTATTTCACATTTTGGGGAAGTCTTAAAAGGCACATTCTCCAATGTGGATTGTGGATTAGCTAAGAACATTGGCTAAAAAAAGAACAGGAAGGGAACAGATGATCCATATATGAGATATCAACTAGTTGGAATTAAGACTTTAGTTATTGTTGTTTCTTTTGTGTTAGGTTCAGTGTTTGGCACGAGCTTTTCAACTTTAGTTAAAGACTTGTCTGCCACTGTTAAGTTAAGTTTGATAATTAGAATTTCCTTGGCTCTAGATAAACCCGAAGTCTTGAAATAGAAATTACTGGTACTGTTACCAAAATGGCCCGAATAGGGCAGAGCTGAGCTTTCAAACTCTAGTTAAAGACTTGTATGCCACTGTTAAGTTAAGTTTGATAATTAGGATTTCCCTGGATCTAGATAAACCAATGTCTTGAAATAGAAATTACTAGTACTGTTACCAAAATGGCCTGAATAGGGCAGAGTTGATAGAGATTAGAGATGATTCAAGTAGCCATAACTAGTTATGATTGAGAAGAGGTTCGTCGGTTGATTAGAATAATTTGAAAGAAATCTAGGTTGGATCTTGTAAGCGGACTATTTTTCGTACTATTCATATAGTTTAGTTTAGTTTTTTCTAAGAAACTGTTCAGTCCATCATCAGTTGTTTGAAGGGAGATTGGACTCTTTAGATCGTCTGGGGCAATCCTCACCCCTTGAGCTAACTTTTCCGATTGAGTTAGGCTCAAGGTTCATTTCTTTACCATGGTACCAGAGGCAGGGTCTCCCCAATTATTGTTTACAACATGTTGAGCCCCCATCTCATAATGTGCACGCTCCAGATGTCCAGTCCTCGGCGTGCAGGGGAAGGGGGAGGCTGTTGCGTCCCACATCGGTTGAGGATGGGAGATTGGACTCCTTATGTGGTCTTGGGCAATCCTCACTTCTTGAACTAGCTTTTACGGTTGAGTTAGGTTCAAGGTCCATTTTTTTAAAATTAAAAACTATTAACAATGGTGTATGTTATGATACATTGAAATTTATAGTCCACAATGTAAAATTTTCTTGGTTTTTGCCTTTATACACCTAACACAGTTTTTCTGGTATTGAACTCTTATTTACCTATGACAAAACCTTTCCTTTCCGCATTTGATGTTCCAGGCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTTGTAAGTCAACTTTTACTTGTCTTTTCCGAGATAATATTATGTACTTCATATTAGGAACATCATATTTCAATACCATTCGACCAAGTTAGTGATGTCCTGTTCTTTTACTTACAGATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAGGTATGACACTAGCCCATGAAATTCTTGCAACTCTTTTTAAGAAGTGAGAAATTGGTGCGACAAAAAGAAAGAACTTTTTTCTTTTCGATGGGGTTTTGGATATGGACTTCGGAAATATTTGTCACTGAGTATCTTCGATCTTTGAACTAGTGAGTTAAAAGAAAGCTTAACGTACATCACAGGTTCGATTTTCGAACGTGCAGTAGATAAAAGCCTGATATTAAAGTAGAGAAGGGTAAAACGGTAGGTTCATTATTTATCGAGTTTCATACCTTGTGCTGCTACAGGCCCTTGGGAATTTCTCGGTAATTAAAACAAAGAAGAAGAAAGAAAGCTTAAAGCTACAAATACATCTATTCTTTGTCACCTATTAGTATTAGATATTTAAATAAGCGAAACCATTAGAACTTTTGTGGTCGTTTAAACATTATTAAAAGAATGCACTCTTCTCCAACATAACTCCCAGAACAGGACATTTCTCCACACATCTAAATCGTAATTCACTGTCTTATCCTTTTTTTCTTCTCTTTTCGGAACTTTTCTGGATTTATATCAATATCTTTCTACCGTGATCAAGGATTTGAATTCACTTATAAATCTCGTAGTTTCTTTTTCTCTCTTTTTATAATTTTCTGTGATAAAACGCCCCCACAGTCTCTGGTTCTTTAATGATGAATATTAACTTTATTCTGATTGCAGTAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAGGCAAGTCACCGGTTAGCTTTTTATTAAGTGAAAAGCCAAATGAGCTCCCATTAACTTTGTGAGAAAATATTTTCAGGTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTG</genome_strand>
        <mrna_strand>AATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAG.............................................................................................GTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT..................................................................................................................ATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAG............................................................................GTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730845" ref_strand="+" ref_description="SGN-E730845 [LA25BE08]">
      <seq>ccattaattgaacttctcactcaccattcaccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagaaaatttagtattacttggagacgaagtttatcagcaaaacatttaccaagatgagcgccccttcataagtgcaagaaaggttttattggatatgggactaccattaagcaaggaggttcagcttgtctcgtttcacactgtctccaaaggatattggggtgaatgtggacagcgtggaggatactttgagatgaccaacattcctcccaaggctgttgaagaaatatacaaggttgcttcaatttcactcagtccaaatgtacctggacagatatttatggggctcatggtgaacccccctaaacctggagatatctcatatgaccaatatgtcagagagagtaagggtatcctcgagtcattaaggaagagggcacacatgatgactgatggtttcaacagctgcagaaatgttgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="131471" stop="75762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83266" g_stop="83203" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="265" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="331" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80453" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="411" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80452" i_stop="78748" i_length="1705">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78747" g_stop="78668" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="491" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78667" i_stop="78575" i_length="93">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78574" g_stop="78443" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="623" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77083" g_stop="77018" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="689" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="76903" g_stop="76839" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="754" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="76838" i_stop="76140" i_length="699">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="76139" g_stop="76062" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="832" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E730845" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83266" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80453"/>
          <exon e_start="78747" e_stop="78668"/>
          <exon e_start="78574" e_stop="78443"/>
          <exon e_start="77083" e_stop="77018"/>
          <exon e_start="76903" e_stop="76839"/>
          <exon e_start="76139" e_stop="76062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAGGTTTGTATTTTGCTTCCATTAAAACTGTAGGGATACGAATATATTTGGTAGTTCTTGCTTATTGTGAATTGCTTATTCTCGGTGTCACATTGTATGTCATGGTTTGAATTGGAAAAACTCCAATAGTGATAGTGAAAAGTATAGTGATCTCATGACACGTTTTATTGGAGTGGTGCTATAATAGTCTTTTCTTTGTAGTGCTTATAAATGACTTATTTCACATTTTGGGGAAGTCTTAAAAGGCACATTCTCCAATGTGGATTGTGGATTAGCTAAGAACATTGGCTAAAAAAAGAACAGGAAGGGAACAGATGATCCATATATGAGATATCAACTAGTTGGAATTAAGACTTTAGTTATTGTTGTTTCTTTTGTGTTAGGTTCAGTGTTTGGCACGAGCTTTTCAACTTTAGTTAAAGACTTGTCTGCCACTGTTAAGTTAAGTTTGATAATTAGAATTTCCTTGGCTCTAGATAAACCCGAAGTCTTGAAATAGAAATTACTGGTACTGTTACCAAAATGGCCCGAATAGGGCAGAGCTGAGCTTTCAAACTCTAGTTAAAGACTTGTATGCCACTGTTAAGTTAAGTTTGATAATTAGGATTTCCCTGGATCTAGATAAACCAATGTCTTGAAATAGAAATTACTAGTACTGTTACCAAAATGGCCTGAATAGGGCAGAGTTGATAGAGATTAGAGATGATTCAAGTAGCCATAACTAGTTATGATTGAGAAGAGGTTCGTCGGTTGATTAGAATAATTTGAAAGAAATCTAGGTTGGATCTTGTAAGCGGACTATTTTTCGTACTATTCATATAGTTTAGTTTAGTTTTTTCTAAGAAACTGTTCAGTCCATCATCAGTTGTTTGAAGGGAGATTGGACTCTTTAGATCGTCTGGGGCAATCCTCACCCCTTGAGCTAACTTTTCCGATTGAGTTAGGCTCAAGGTTCATTTCTTTACCATGGTACCAGAGGCAGGGTCTCCCCAATTATTGTTTACAACATGTTGAGCCCCCATCTCATAATGTGCACGCTCCAGATGTCCAGTCCTCGGCGTGCAGGGGAAGGGGGAGGCTGTTGCGTCCCACATCGGTTGAGGATGGGAGATTGGACTCCTTATGTGGTCTTGGGCAATCCTCACTTCTTGAACTAGCTTTTACGGTTGAGTTAGGTTCAAGGTCCATTTTTTTAAAATTAAAAACTATTAACAATGGTGTATGTTATGATACATTGAAATTTATAGTCCACAATGTAAAATTTTCTTGGTTTTTGCCTTTATACACCTAACACAGTTTTTCTGGTATTGAACTCTTATTTACCTATGACAAAACCTTTCCTTTCCGCATTTGATGTTCCAGGCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTTGTAAGTCAACTTTTACTTGTCTTTTCCGAGATAATATTATGTACTTCATATTAGGAACATCATATTTCAATACCATTCGACCAAGTTAGTGATGTCCTGTTCTTTTACTTACAGATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAGGTATGACACTAGCCCATGAAATTCTTGCAACTCTTTTTAAGAAGTGAGAAATTGGTGCGACAAAAAGAAAGAACTTTTTTCTTTTCGATGGGGTTTTGGATATGGACTTCGGAAATATTTGTCACTGAGTATCTTCGATCTTTGAACTAGTGAGTTAAAAGAAAGCTTAACGTACATCACAGGTTCGATTTTCGAACGTGCAGTAGATAAAAGCCTGATATTAAAGTAGAGAAGGGTAAAACGGTAGGTTCATTATTTATCGAGTTTCATACCTTGTGCTGCTACAGGCCCTTGGGAATTTCTCGGTAATTAAAACAAAGAAGAAGAAAGAAAGCTTAAAGCTACAAATACATCTATTCTTTGTCACCTATTAGTATTAGATATTTAAATAAGCGAAACCATTAGAACTTTTGTGGTCGTTTAAACATTATTAAAAGAATGCACTCTTCTCCAACATAACTCCCAGAACAGGACATTTCTCCACACATCTAAATCGTAATTCACTGTCTTATCCTTTTTTTCTTCTCTTTTCGGAACTTTTCTGGATTTATATCAATATCTTTCTACCGTGATCAAGGATTTGAATTCACTTATAAATCTCGTAGTTTCTTTTTCTCTCTTTTTATAATTTTCTGTGATAAAACGCCCCCACAGTCTCTGGTTCTTTAATGATGAATATTAACTTTATTCTGATTGCAGTAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTG</genome_strand>
        <mrna_strand>CCATTAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAG.............................................................................................GTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT..................................................................................................................ATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294823" ref_strand="+" ref_description="SGN-E294823 [cLET-17-J10]">
      <seq>gattataaaccctggaaatcccactggacaatgtcttagtgtggcaaatcttaagcaaattattcaattctgtcaccaagaaaatttagtattacttggagacgaagtttatcagcaaaacatttaccaagatgagcgccccttcataagtgcaagaaaggttttattggatatgggactaccattaagcaaggaggttcagcttgtctcgtttcacactgtctccaaaggatattggggtgaatgtggacagcgtggaggatactttgagatgaccaacattcctcccaaggctgttgaagaaatatacaaggttgcttcaatttcactcagtccaaatgtacctggacagatatttatggggctcatggtgaacccccctaaacctggagatatctcatatgaccaatatgtcagagagagtaagggtatcctcgagtcattaaggaagagggcacacatgatgactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="79127" stop="75792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78827" g_stop="78668" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78667" i_stop="78575" i_length="93">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78574" g_stop="78443" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="292" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77083" g_stop="77018" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="358" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76903" g_stop="76839" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="423" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76838" i_stop="76140" i_length="699">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76139" g_stop="76092" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="471" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E294823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78827" e_stop="78668"/>
          <exon e_start="78574" e_stop="78443"/>
          <exon e_start="77083" e_stop="77018"/>
          <exon e_start="76903" e_stop="76839"/>
          <exon e_start="76139" e_stop="76092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAGGTTTGTATTTTGCTTCCATTAAAACTGTAGGGATACGAATATATTTGGTAGTTCTTGCTTATTGTGAATTGCTTATTCTCGGTGTCACATTGTATGTCATGGTTTGAATTGGAAAAACTCCAATAGTGATAGTGAAAAGTATAGTGATCTCATGACACGTTTTATTGGAGTGGTGCTATAATAGTCTTTTCTTTGTAGTGCTTATAAATGACTTATTTCACATTTTGGGGAAGTCTTAAAAGGCACATTCTCCAATGTGGATTGTGGATTAGCTAAGAACATTGGCTAAAAAAAGAACAGGAAGGGAACAGATGATCCATATATGAGATATCAACTAGTTGGAATTAAGACTTTAGTTATTGTTGTTTCTTTTGTGTTAGGTTCAGTGTTTGGCACGAGCTTTTCAACTTTAGTTAAAGACTTGTCTGCCACTGTTAAGTTAAGTTTGATAATTAGAATTTCCTTGGCTCTAGATAAACCCGAAGTCTTGAAATAGAAATTACTGGTACTGTTACCAAAATGGCCCGAATAGGGCAGAGCTGAGCTTTCAAACTCTAGTTAAAGACTTGTATGCCACTGTTAAGTTAAGTTTGATAATTAGGATTTCCCTGGATCTAGATAAACCAATGTCTTGAAATAGAAATTACTAGTACTGTTACCAAAATGGCCTGAATAGGGCAGAGTTGATAGAGATTAGAGATGATTCAAGTAGCCATAACTAGTTATGATTGAGAAGAGGTTCGTCGGTTGATTAGAATAATTTGAAAGAAATCTAGGTTGGATCTTGTAAGCGGACTATTTTTCGTACTATTCATATAGTTTAGTTTAGTTTTTTCTAAGAAACTGTTCAGTCCATCATCAGTTGTTTGAAGGGAGATTGGACTCTTTAGATCGTCTGGGGCAATCCTCACCCCTTGAGCTAACTTTTCCGATTGAGTTAGGCTCAAGGTTCATTTCTTTACCATGGTACCAGAGGCAGGGTCTCCCCAATTATTGTTTACAACATGTTGAGCCCCCATCTCATAATGTGCACGCTCCAGATGTCCAGTCCTCGGCGTGCAGGGGAAGGGGGAGGCTGTTGCGTCCCACATCGGTTGAGGATGGGAGATTGGACTCCTTATGTGGTCTTGGGCAATCCTCACTTCTTGAACTAGCTTTTACGGTTGAGTTAGGTTCAAGGTCCATTTTTTTAAAATTAAAAACTATTAACAATGGTGTATGTTATGATACATTGAAATTTATAGTCCACAATGTAAAATTTTCTTGGTTTTTGCCTTTATACACCTAACACAGTTTTTCTGGTATTGAACTCTTATTTACCTATGACAAAACCTTTCCTTTCCGCATTTGATGTTCCAGGCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTTGTAAGTCAACTTTTACTTGTCTTTTCCGAGATAATATTATGTACTTCATATTAGGAACATCATATTTCAATACCATTCGACCAAGTTAGTGATGTCCTGTTCTTTTACTTACAGATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAGGTATGACACTAGCCCATGAAATTCTTGCAACTCTTTTTAAGAAGTGAGAAATTGGTGCGACAAAAAGAAAGAACTTTTTTCTTTTCGATGGGGTTTTGGATATGGACTTCGGAAATATTTGTCACTGAGTATCTTCGATCTTTGAACTAGTGAGTTAAAAGAAAGCTTAACGTACATCACAGGTTCGATTTTCGAACGTGCAGTAGATAAAAGCCTGATATTAAAGTAGAGAAGGGTAAAACGGTAGGTTCATTATTTATCGAGTTTCATACCTTGTGCTGCTACAGGCCCTTGGGAATTTCTCGGTAATTAAAACAAAGAAGAAGAAAGAAAGCTTAAAGCTACAAATACATCTATTCTTTGTCACCTATTAGTATTAGATATTTAAATAAGCGAAACCATTAGAACTTTTGTGGTCGTTTAAACATTATTAAAAGAATGCACTCTTCTCCAACATAACTCCCAGAACAGGACATTTCTCCACACATCTAAATCGTAATTCACTGTCTTATCCTTTTTTTCTTCTCTTTTCGGAACTTTTCTGGATTTATATCAATATCTTTCTACCGTGATCAAGGATTTGAATTCACTTATAAATCTCGTAGTTTCTTTTTCTCTCTTTTTATAATTTTCTGTGATAAAACGCCCCCACAGTCTCTGGTTCTTTAATGATGAATATTAACTTTATTCTGATTGCAGTAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGA</genome_strand>
        <mrna_strand>GATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAG.............................................................................................GTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT..................................................................................................................ATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735310" ref_strand="+" ref_description="SGN-E735310 [LC01AA03]">
      <seq>ccgctgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatactttgagatgaccaacattcctcccaaggctgttgaagaaatatacaaggttgcttcaatttcactcagtccaaatgtacctggacagatatttatggggctcatggtgaacccccctaaacctggagatatctcatatgaccaatatgtcagagagagtaagggtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="81720" stop="76534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81422" g_stop="81227" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="262" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="380" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79842" g_stop="79771" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="452" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79770" i_stop="78475" i_length="1296">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78474" g_stop="78443" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="484" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77083" g_stop="77018" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="550" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76903" g_stop="76839" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="615" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E735310" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81422" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79771"/>
          <exon e_start="78474" e_stop="78443"/>
          <exon e_start="77083" e_stop="77018"/>
          <exon e_start="76903" e_stop="76839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAGGTTTGTATTTTGCTTCCATTAAAACTGTAGGGATACGAATATATTTGGTAGTTCTTGCTTATTGTGAATTGCTTATTCTCGGTGTCACATTGTATGTCATGGTTTGAATTGGAAAAACTCCAATAGTGATAGTGAAAAGTATAGTGATCTCATGACACGTTTTATTGGAGTGGTGCTATAATAGTCTTTTCTTTGTAGTGCTTATAAATGACTTATTTCACATTTTGGGGAAGTCTTAAAAGGCACATTCTCCAATGTGGATTGTGGATTAGCTAAGAACATTGGCTAAAAAAAGAACAGGAAGGGAACAGATGATCCATATATGAGATATCAACTAGTTGGAATTAAGACTTTAGTTATTGTTGTTTCTTTTGTGTTAGGTTCAGTGTTTGGCACGAGCTTTTCAACTTTAGTTAAAGACTTGTCTGCCACTGTTAAGTTAAGTTTGATAATTAGAATTTCCTTGGCTCTAGATAAACCCGAAGTCTTGAAATAGAAATTACTGGTACTGTTACCAAAATGGCCCGAATAGGGCAGAGCTGAGCTTTCAAACTCTAGTTAAAGACTTGTATGCCACTGTTAAGTTAAGTTTGATAATTAGGATTTCCCTGGATCTAGATAAACCAATGTCTTGAAATAGAAATTACTAGTACTGTTACCAAAATGGCCTGAATAGGGCAGAGTTGATAGAGATTAGAGATGATTCAAGTAGCCATAACTAGTTATGATTGAGAAGAGGTTCGTCGGTTGATTAGAATAATTTGAAAGAAATCTAGGTTGGATCTTGTAAGCGGACTATTTTTCGTACTATTCATATAGTTTAGTTTAGTTTTTTCTAAGAAACTGTTCAGTCCATCATCAGTTGTTTGAAGGGAGATTGGACTCTTTAGATCGTCTGGGGCAATCCTCACCCCTTGAGCTAACTTTTCCGATTGAGTTAGGCTCAAGGTTCATTTCTTTACCATGGTACCAGAGGCAGGGTCTCCCCAATTATTGTTTACAACATGTTGAGCCCCCATCTCATAATGTGCACGCTCCAGATGTCCAGTCCTCGGCGTGCAGGGGAAGGGGGAGGCTGTTGCGTCCCACATCGGTTGAGGATGGGAGATTGGACTCCTTATGTGGTCTTGGGCAATCCTCACTTCTTGAACTAGCTTTTACGGTTGAGTTAGGTTCAAGGTCCATTTTTTTAAAATTAAAAACTATTAACAATGGTGTATGTTATGATACATTGAAATTTATAGTCCACAATGTAAAATTTTCTTGGTTTTTGCCTTTATACACCTAACACAGTTTTTCTGGTATTGAACTCTTATTTACCTATGACAAAACCTTTCCTTTCCGCATTTGATGTTCCAGGCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTTGTAAGTCAACTTTTACTTGTCTTTTCCGAGATAATATTATGTACTTCATATTAGGAACATCATATTTCAATACCATTCGACCAAGTTAGTGATGTCCTGTTCTTTTACTTACAGATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG</genome_strand>
        <mrna_strand>CCGCTGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTTTGAGATGACCAACATTCCTCCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT..................................................................................................................ATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740575" ref_strand="+" ref_description="SGN-E740575 [LC22AB09]">
      <seq>cagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatactttgagatgaccaacattcctcccaaggctgttgaagaaatatacaaggttgcttcaatttcactcagtccaaatgtacctggacagatatttatggggctcatggtgaacccccctaaacctggagatatctcatatgaccaatatgtcagagagagtaagggtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="81721" stop="76534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81422" g_stop="81227" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="262" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="380" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79842" g_stop="79771" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="452" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79770" i_stop="78475" i_length="1296">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78474" g_stop="78443" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="484" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77083" g_stop="77018" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="550" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76903" g_stop="76839" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="615" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E740575" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81422" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79771"/>
          <exon e_start="78474" e_stop="78443"/>
          <exon e_start="77083" e_stop="77018"/>
          <exon e_start="76903" e_stop="76839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAGGTTTGTATTTTGCTTCCATTAAAACTGTAGGGATACGAATATATTTGGTAGTTCTTGCTTATTGTGAATTGCTTATTCTCGGTGTCACATTGTATGTCATGGTTTGAATTGGAAAAACTCCAATAGTGATAGTGAAAAGTATAGTGATCTCATGACACGTTTTATTGGAGTGGTGCTATAATAGTCTTTTCTTTGTAGTGCTTATAAATGACTTATTTCACATTTTGGGGAAGTCTTAAAAGGCACATTCTCCAATGTGGATTGTGGATTAGCTAAGAACATTGGCTAAAAAAAGAACAGGAAGGGAACAGATGATCCATATATGAGATATCAACTAGTTGGAATTAAGACTTTAGTTATTGTTGTTTCTTTTGTGTTAGGTTCAGTGTTTGGCACGAGCTTTTCAACTTTAGTTAAAGACTTGTCTGCCACTGTTAAGTTAAGTTTGATAATTAGAATTTCCTTGGCTCTAGATAAACCCGAAGTCTTGAAATAGAAATTACTGGTACTGTTACCAAAATGGCCCGAATAGGGCAGAGCTGAGCTTTCAAACTCTAGTTAAAGACTTGTATGCCACTGTTAAGTTAAGTTTGATAATTAGGATTTCCCTGGATCTAGATAAACCAATGTCTTGAAATAGAAATTACTAGTACTGTTACCAAAATGGCCTGAATAGGGCAGAGTTGATAGAGATTAGAGATGATTCAAGTAGCCATAACTAGTTATGATTGAGAAGAGGTTCGTCGGTTGATTAGAATAATTTGAAAGAAATCTAGGTTGGATCTTGTAAGCGGACTATTTTTCGTACTATTCATATAGTTTAGTTTAGTTTTTTCTAAGAAACTGTTCAGTCCATCATCAGTTGTTTGAAGGGAGATTGGACTCTTTAGATCGTCTGGGGCAATCCTCACCCCTTGAGCTAACTTTTCCGATTGAGTTAGGCTCAAGGTTCATTTCTTTACCATGGTACCAGAGGCAGGGTCTCCCCAATTATTGTTTACAACATGTTGAGCCCCCATCTCATAATGTGCACGCTCCAGATGTCCAGTCCTCGGCGTGCAGGGGAAGGGGGAGGCTGTTGCGTCCCACATCGGTTGAGGATGGGAGATTGGACTCCTTATGTGGTCTTGGGCAATCCTCACTTCTTGAACTAGCTTTTACGGTTGAGTTAGGTTCAAGGTCCATTTTTTTAAAATTAAAAACTATTAACAATGGTGTATGTTATGATACATTGAAATTTATAGTCCACAATGTAAAATTTTCTTGGTTTTTGCCTTTATACACCTAACACAGTTTTTCTGGTATTGAACTCTTATTTACCTATGACAAAACCTTTCCTTTCCGCATTTGATGTTCCAGGCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTTGTAAGTCAACTTTTACTTGTCTTTTCCGAGATAATATTATGTACTTCATATTAGGAACATCATATTTCAATACCATTCGACCAAGTTAGTGATGTCCTGTTCTTTTACTTACAGATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG</genome_strand>
        <mrna_strand>CAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTTTGAGATGACCAACATTCCTCCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT..................................................................................................................ATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737532" ref_strand="+" ref_description="SGN-E737532 [LC10BA03]">
      <seq>agccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatactttgagatgaccaacattcctcccaaggctgttgaagaaatatacaaggttgcttcaatttcactcagtccaaatgtacctggacagatatttatggggctcatggtgaacccccctaaacctggagatatctcatatgaccaatatgtcagagagagtaagggtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="81721" stop="76534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81421" g_stop="81227" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="261" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="379" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79842" g_stop="79771" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="451" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79770" i_stop="78475" i_length="1296">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78474" g_stop="78443" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="483" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77083" g_stop="77018" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="549" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76903" g_stop="76839" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="614" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E737532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81421" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79771"/>
          <exon e_start="78474" e_stop="78443"/>
          <exon e_start="77083" e_stop="77018"/>
          <exon e_start="76903" e_stop="76839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAGGTTTGTATTTTGCTTCCATTAAAACTGTAGGGATACGAATATATTTGGTAGTTCTTGCTTATTGTGAATTGCTTATTCTCGGTGTCACATTGTATGTCATGGTTTGAATTGGAAAAACTCCAATAGTGATAGTGAAAAGTATAGTGATCTCATGACACGTTTTATTGGAGTGGTGCTATAATAGTCTTTTCTTTGTAGTGCTTATAAATGACTTATTTCACATTTTGGGGAAGTCTTAAAAGGCACATTCTCCAATGTGGATTGTGGATTAGCTAAGAACATTGGCTAAAAAAAGAACAGGAAGGGAACAGATGATCCATATATGAGATATCAACTAGTTGGAATTAAGACTTTAGTTATTGTTGTTTCTTTTGTGTTAGGTTCAGTGTTTGGCACGAGCTTTTCAACTTTAGTTAAAGACTTGTCTGCCACTGTTAAGTTAAGTTTGATAATTAGAATTTCCTTGGCTCTAGATAAACCCGAAGTCTTGAAATAGAAATTACTGGTACTGTTACCAAAATGGCCCGAATAGGGCAGAGCTGAGCTTTCAAACTCTAGTTAAAGACTTGTATGCCACTGTTAAGTTAAGTTTGATAATTAGGATTTCCCTGGATCTAGATAAACCAATGTCTTGAAATAGAAATTACTAGTACTGTTACCAAAATGGCCTGAATAGGGCAGAGTTGATAGAGATTAGAGATGATTCAAGTAGCCATAACTAGTTATGATTGAGAAGAGGTTCGTCGGTTGATTAGAATAATTTGAAAGAAATCTAGGTTGGATCTTGTAAGCGGACTATTTTTCGTACTATTCATATAGTTTAGTTTAGTTTTTTCTAAGAAACTGTTCAGTCCATCATCAGTTGTTTGAAGGGAGATTGGACTCTTTAGATCGTCTGGGGCAATCCTCACCCCTTGAGCTAACTTTTCCGATTGAGTTAGGCTCAAGGTTCATTTCTTTACCATGGTACCAGAGGCAGGGTCTCCCCAATTATTGTTTACAACATGTTGAGCCCCCATCTCATAATGTGCACGCTCCAGATGTCCAGTCCTCGGCGTGCAGGGGAAGGGGGAGGCTGTTGCGTCCCACATCGGTTGAGGATGGGAGATTGGACTCCTTATGTGGTCTTGGGCAATCCTCACTTCTTGAACTAGCTTTTACGGTTGAGTTAGGTTCAAGGTCCATTTTTTTAAAATTAAAAACTATTAACAATGGTGTATGTTATGATACATTGAAATTTATAGTCCACAATGTAAAATTTTCTTGGTTTTTGCCTTTATACACCTAACACAGTTTTTCTGGTATTGAACTCTTATTTACCTATGACAAAACCTTTCCTTTCCGCATTTGATGTTCCAGGCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTTGTAAGTCAACTTTTACTTGTCTTTTCCGAGATAATATTATGTACTTCATATTAGGAACATCATATTTCAATACCATTCGACCAAGTTAGTGATGTCCTGTTCTTTTACTTACAGATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG</genome_strand>
        <mrna_strand>AGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTTTGAGATGACCAACATTCCTCCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT..................................................................................................................ATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289839" ref_strand="+" ref_description="SGN-E289839 [cLET-9-B24]">
      <seq>aagagactgcaaactggggtcttgatatcaatgaccttctccaatcagttgcacaggcacgatacaagggaataactgtacgagctatggtgattataaaccctggaaatcccactggacaatgtcttagtgtggcaaatcttaagcaaattattcaattctgtcaccaagaaaatttagtattacttggagacgaagtttatcagctaaacatttaccaagatgagcgccccttcataagtgcaagaaaggttttattggatatgggactaccattaagcaaggaggttcagcttgtctcgtttcacactgtctccaaaggatattggggtgaatgtggacagcgtggaggatactttgagatgaccaacattcctcccaaggctgttgaagaaatatacaaggttggttcaatttcactcagtccaaatgtacctggacagatatttatggggctcatggtgaacccccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="79653" stop="76580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79353" g_stop="79277" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79276" i_stop="78842" i_length="435">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78841" g_stop="78668" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="251" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78667" i_stop="78575" i_length="93">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78574" g_stop="78443" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="383" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77083" g_stop="77018" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="449" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76903" g_stop="76880" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="473" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E289839" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79353" e_stop="79277"/>
          <exon e_start="78841" e_stop="78668"/>
          <exon e_start="78574" e_stop="78443"/>
          <exon e_start="77083" e_stop="77018"/>
          <exon e_start="76903" e_stop="76880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAGGTTTGTATTTTGCTTCCATTAAAACTGTAGGGATACGAATATATTTGGTAGTTCTTGCTTATTGTGAATTGCTTATTCTCGGTGTCACATTGTATGTCATGGTTTGAATTGGAAAAACTCCAATAGTGATAGTGAAAAGTATAGTGATCTCATGACACGTTTTATTGGAGTGGTGCTATAATAGTCTTTTCTTTGTAGTGCTTATAAATGACTTATTTCACATTTTGGGGAAGTCTTAAAAGGCACATTCTCCAATGTGGATTGTGGATTAGCTAAGAACATTGGCTAAAAAAAGAACAGGAAGGGAACAGATGATCCATATATGAGATATCAACTAGTTGGAATTAAGACTTTAGTTATTGTTGTTTCTTTTGTGTTAGGTTCAGTGTTTGGCACGAGCTTTTCAACTTTAGTTAAAGACTTGTCTGCCACTGTTAAGTTAAGTTTGATAATTAGAATTTCCTTGGCTCTAGATAAACCCGAAGTCTTGAAATAGAAATTACTGGTACTGTTACCAAAATGGCCCGAATAGGGCAGAGCTGAGCTTTCAAACTCTAGTTAAAGACTTGTATGCCACTGTTAAGTTAAGTTTGATAATTAGGATTTCCCTGGATCTAGATAAACCAATGTCTTGAAATAGAAATTACTAGTACTGTTACCAAAATGGCCTGAATAGGGCAGAGTTGATAGAGATTAGAGATGATTCAAGTAGCCATAACTAGTTATGATTGAGAAGAGGTTCGTCGGTTGATTAGAATAATTTGAAAGAAATCTAGGTTGGATCTTGTAAGCGGACTATTTTTCGTACTATTCATATAGTTTAGTTTAGTTTTTTCTAAGAAACTGTTCAGTCCATCATCAGTTGTTTGAAGGGAGATTGGACTCTTTAGATCGTCTGGGGCAATCCTCACCCCTTGAGCTAACTTTTCCGATTGAGTTAGGCTCAAGGTTCATTTCTTTACCATGGTACCAGAGGCAGGGTCTCCCCAATTATTGTTTACAACATGTTGAGCCCCCATCTCATAATGTGCACGCTCCAGATGTCCAGTCCTCGGCGTGCAGGGGAAGGGGGAGGCTGTTGCGTCCCACATCGGTTGAGGATGGGAGATTGGACTCCTTATGTGGTCTTGGGCAATCCTCACTTCTTGAACTAGCTTTTACGGTTGAGTTAGGTTCAAGGTCCATTTTTTTAAAATTAAAAACTATTAACAATGGTGTATGTTATGATACATTGAAATTTATAGTCCACAATGTAAAATTTTCTTGGTTTTTGCCTTTATACACCTAACACAGTTTTTCTGGTATTGAACTCTTATTTACCTATGACAAAACCTTTCCTTTCCGCATTTGATGTTCCAGGCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTTGTAAGTCAACTTTTACTTGTCTTTTCCGAGATAATATTATGTACTTCATATTAGGAACATCATATTTCAATACCATTCGACCAAGTTAGTGATGTCCTGTTCTTTTACTTACAGATGGGGCTCATGGTGAACCCCCCT</genome_strand>
        <mrna_strand>AAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCTCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCTAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAG.............................................................................................GTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAAGAAATATACAAGGTTGGTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT..................................................................................................................ATGGGGCTCATGGTGAACCCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726758" ref_strand="+" ref_description="SGN-E726758 [LA12DA01]">
      <seq>aggctagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccaaaactcatatttctcacagatggtgccagcaaaggagtgatgcatatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtatccactatactcggcttcaatacaattattggggggttctcttgttccttactaccttgaacagactgcgaactggggtcttgatatcaatgaccttcgccaatcagttgcacaggcacgatacaagggaataactgtacgagctatggtgattataaaccctggaaatcccactggacaatgtcttactgtggcaaatcttaagcaaattattcaattctgtcaccaagaaaatttagtattacttggagacgaagtttatcggcaaaacatttaccaagatgagcgccccttcataagtgcaagaaaggttttattggatatgggactaccattaagcaaggaggttcagcttgtctcgtttcacactgtctccaaaggatattggggtgaatgtggacagcgtggaggatactttgagatgaccaacattcctcccaaggctgttgaagaaatatacaaggttgcttcaatttcactcagtcccaatgtacctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="80757" stop="76728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80459" g_stop="80415" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="0.93"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="127" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="215" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="0.98"/>
            <acceptor a_prob="0.482" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79435" g_stop="79277" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="374" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79276" i_stop="78842" i_length="435">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78841" g_stop="78668" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="548" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78667" i_stop="78575" i_length="93">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78574" g_stop="78443" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="680" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77083" g_stop="77028" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="736" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E726758" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80459" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79277"/>
          <exon e_start="78841" e_stop="78668"/>
          <exon e_start="78574" e_stop="78443"/>
          <exon e_start="77083" e_stop="77028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAGGTTTGTATTTTGCTTCCATTAAAACTGTAGGGATACGAATATATTTGGTAGTTCTTGCTTATTGTGAATTGCTTATTCTCGGTGTCACATTGTATGTCATGGTTTGAATTGGAAAAACTCCAATAGTGATAGTGAAAAGTATAGTGATCTCATGACACGTTTTATTGGAGTGGTGCTATAATAGTCTTTTCTTTGTAGTGCTTATAAATGACTTATTTCACATTTTGGGGAAGTCTTAAAAGGCACATTCTCCAATGTGGATTGTGGATTAGCTAAGAACATTGGCTAAAAAAAGAACAGGAAGGGAACAGATGATCCATATATGAGATATCAACTAGTTGGAATTAAGACTTTAGTTATTGTTGTTTCTTTTGTGTTAGGTTCAGTGTTTGGCACGAGCTTTTCAACTTTAGTTAAAGACTTGTCTGCCACTGTTAAGTTAAGTTTGATAATTAGAATTTCCTTGGCTCTAGATAAACCCGAAGTCTTGAAATAGAAATTACTGGTACTGTTACCAAAATGGCCCGAATAGGGCAGAGCTGAGCTTTCAAACTCTAGTTAAAGACTTGTATGCCACTGTTAAGTTAAGTTTGATAATTAGGATTTCCCTGGATCTAGATAAACCAATGTCTTGAAATAGAAATTACTAGTACTGTTACCAAAATGGCCTGAATAGGGCAGAGTTGATAGAGATTAGAGATGATTCAAGTAGCCATAACTAGTTATGATTGAGAAGAGGTTCGTCGGTTGATTAGAATAATTTGAAAGAAATCTAGGTTGGATCTTGTAAGCGGACTATTTTTCGTACTATTCATATAGTTTAGTTTAGTTTTTTCTAAGAAACTGTTCAGTCCATCATCAGTTGTTTGAAGGGAGATTGGACTCTTTAGATCGTCTGGGGCAATCCTCACCCCTTGAGCTAACTTTTCCGATTGAGTTAGGCTCAAGGTTCATTTCTTTACCATGGTACCAGAGGCAGGGTCTCCCCAATTATTGTTTACAACATGTTGAGCCCCCATCTCATAATGTGCACGCTCCAGATGTCCAGTCCTCGGCGTGCAGGGGAAGGGGGAGGCTGTTGCGTCCCACATCGGTTGAGGATGGGAGATTGGACTCCTTATGTGGTCTTGGGCAATCCTCACTTCTTGAACTAGCTTTTACGGTTGAGTTAGGTTCAAGGTCCATTTTTTTAAAATTAAAAACTATTAACAATGGTGTATGTTATGATACATTGAAATTTATAGTCCACAATGTAAAATTTTCTTGGTTTTTGCCTTTATACACCTAACACAGTTTTTCTGGTATTGAACTCTTATTTACCTATGACAAAACCTTTCCTTTCCGCATTTGATGTTCCAGGCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGG</genome_strand>
        <mrna_strand>AGGCTAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAAAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCATATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTATCCACTATACTCGGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAACAGACTGCGAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTACTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCGGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAG.............................................................................................GTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCCAATGTACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738781" ref_strand="+" ref_description="SGN-E738781 [LC14DG11]">
      <seq>gaggcactcaccattcaccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggatactttgagatgaccaacattcctcccaaggtttgtattttgcttccattaaaactgtagggatacgaatatatttggtagttcttgcttattgtgaattgcttattctcggtgccacattgtatgtcatggttcgaattggaaaaactccaatagtgatagtgaaaagtatagtgatctcatgacacgttttattggagtggtgctataaatagtcttttctttgtagtgcttataaatgacttatttcacattttggggaagtcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83549" stop="77903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83253" g_stop="83203" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="252" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="318" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80421" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="430" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80420" i_stop="78475" i_length="1946">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78474" g_stop="78203" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="703" r_length="273" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E738781" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83253" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80421"/>
          <exon e_start="78474" e_stop="78203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAGGTTTGTATTTTGCTTCCATTAAAACTGTAGGGATACGAATATATTTGGTAGTTCTTGCTTATTGTGAATTGCTTATTCTCGGTGTCACATTGTATGTCATGGTTTGAATTGGAAAAACTCCAATAGTGATAGTGAAAAGTATAGTGATCTCATGACACGTTTTATTGGAGTGGTGCTAT-AATAGTCTTTTCTTTGTAGTGCTTATAAATGACTTATTTCACATTTTGGGGAAGTCTTAAA</genome_strand>
        <mrna_strand>GAGGCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTTTGAGATGACCAACATTCCTCCCAAGGTTTGTATTTTGCTTCCATTAAAACTGTAGGGATACGAATATATTTGGTAGTTCTTGCTTATTGTGAATTGCTTATTCTCGGTGCCACATTGTATGTCATGGTTCGAATTGGAAAAACTCCAATAGTGATAGTGAAAAGTATAGTGATCTCATGACACGTTTTATTGGAGTGGTGCTATAAATAGTCTTTTCTTTGTAGTGCTTATAAATGACTTATTTCACATTTTGGGGAAGTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710921" ref_strand="+" ref_description="SGN-E710921 [FA57BF02]">
      <seq>aggaaagaagnntgagaattcattgctttacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgcagatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtatccactatactcagcttcaatacaattattggggggttctcttgttccttactaccttgaagagactgcaaactggggtcttgatatcaatgaccttcgccaatcagttgcacaggcacgatacaagggaataactgtacgagctatggtgattataaaccctggaaatcccactggacaatgtcttagtgtggcaaatcttaagcaaattattcaattctgtcaccaagaaaatttagtattacttggagacgaagtttatcagcaaaacatttaccaagatgagcgccccttcataagtgcaagaaaggttttattggatatgggactaccattaagcaaggaggttcagcttgtctcgtttcacactgtctccaaaggatattggggtgaatgtggacagcgtggaggatactttgagatgaccaacattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="80078" stop="78150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79807" g_stop="79761" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.830"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="0.83"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="135" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.482" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79435" g_stop="79277" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="294" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79276" i_stop="78842" i_length="435">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78841" g_stop="78668" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="468" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78667" i_stop="78575" i_length="93">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78574" g_stop="78450" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="593" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E710921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79807" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79277"/>
          <exon e_start="78841" e_stop="78668"/>
          <exon e_start="78574" e_stop="78450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCC</genome_strand>
        <mrna_strand>AGGAAAGAAGNNTGAGAATTCATTGCTTTACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAG.............................................................................................GTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725504" ref_strand="+" ref_description="SGN-E725504 [LA03DD03]">
      <seq>aagtgatgggatattggtacctgtgccccagtatccactatactcagcttcaatacaattattggggggttctcttgttccttactaccttgaagagactgcaaactggggtcttgatatcaatgaccttcgccaatcagttgcacaggcacgatacaagggaataactgtacgagctatggtgattataaaccctggaaatcccactggacaatgtcttagtgtggcaaatcttaagcaaattattcaattctgtcaccaagaaaatttagtattacttggagacgaagtttatcagcaaaacatttaccaagatgagcgccccttcataagtgcaagagaggttttattggatatgggactaccattaagcaaggaggttcagcttgtctcgtttcacactgtctccaaaggatattggggtgaatgtggacagcgtggaggatactttgagatgaccaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="79736" stop="78152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79593" g_stop="79584" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="0.00"/>
            <acceptor a_prob="0.482" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79435" g_stop="79277" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="169" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79276" i_stop="78842" i_length="435">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78841" g_stop="78668" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="343" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78667" i_stop="78575" i_length="93">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78574" g_stop="78452" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="466" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E725504" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79593" e_stop="79584"/>
          <exon e_start="79435" e_stop="79277"/>
          <exon e_start="78841" e_stop="78668"/>
          <exon e_start="78574" e_stop="78452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATT</genome_strand>
        <mrna_strand>AAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTGCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAGAG.............................................................................................GTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296838" ref_strand="+" ref_description="SGN-E296838 [cLET-26-P21]">
      <seq>aaaggagtgatgcacatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtatccactatactcagcttcaatacaattattggggggttctcttgttccttactaccttgaagagactgcaaactggggtcttgatatcaatgaccttcgccaatcagttgcacaggcacgatacaagggaataactgtacgagctatggtgattataaaccctggaaatcccactggacaatgtcttagtgtggcaaatcttaagcaaattattcaattctgtcaccaagaaaatttagtattacttggagacgaagtttatcagcaaaacatttaccaagatgagcgccccttcataagtgcaagaaaggttttattggatatgggactaccattaagcaaggaggttcagcttgtctcgtttcacactgtctacaaaggatattggggtgaatgtggacagcgtggaggatactttgagatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="79934" stop="78159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79634" g_stop="79584" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="0.98"/>
            <acceptor a_prob="0.482" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79435" g_stop="79277" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="210" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79276" i_stop="78842" i_length="435">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78841" g_stop="78668" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="384" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78667" i_stop="78575" i_length="93">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78574" g_stop="78459" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="500" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E296838" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79634" e_stop="79584"/>
          <exon e_start="79435" e_stop="79277"/>
          <exon e_start="78841" e_stop="78668"/>
          <exon e_start="78574" e_stop="78459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGAC</genome_strand>
        <mrna_strand>AAAGGAGTGATGCACATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAG.............................................................................................GTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTACAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296839" ref_strand="+" ref_description="SGN-E296839 [cLET-26-P23]">
      <seq>accaaccaaataaacagagtagtctgtntcattcgcggcccaagtgatgggatattggtacctgttcccctgtatccactatactcagcttcaatacaattattggggggttctcttgttccttactaccttgaagagactgcaaactggggtcttgatatcaatgaccttcgccaatcagttgcacaggcacgatacaagggaataactgtactagctatggtgattataaaccctggaaatcccactggacattgtcttagtgtggcaaatcttaagcaaattattcaattctgtcaccaagaaaatttagtattacttggagacgaagtttatcagcaaaacatttaccaagatgagcgccccttcataagtgcaagaaaggttttattggatatgggactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="79911" stop="78253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79637" g_stop="79584" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.722"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="0.72"/>
            <acceptor a_prob="0.482" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79435" g_stop="79277" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="210" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79276" i_stop="78842" i_length="435">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78841" g_stop="78668" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="384" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78667" i_stop="78575" i_length="93">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78574" g_stop="78553" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="406" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E296839" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79637" e_stop="79584"/>
          <exon e_start="79435" e_stop="79277"/>
          <exon e_start="78841" e_stop="78668"/>
          <exon e_start="78574" e_stop="78553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATATGGGACTAC</genome_strand>
        <mrna_strand>ACCAACCAAAT-AAACAGA-GTAG-TCTGTNTCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCTGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACATTGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAG.............................................................................................GTTTTATTGGATATGGGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332062" ref_strand="+" ref_description="SGN-E332062 [cTOD-16-E19]">
      <seq>gcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgcagatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtatccactatactcagcttcaatacaattattggggggttctcttgttccttactaccttgaagagactgcaaactggggtcttgatatcaatgaccttcgccaatcagttgcacaggcacgatacaagggaataactgtacgagctatggtgattataaaccctggaaatcccactggacaatgtcttagtgtggcaaatcttaagcaaattattcaattctgtcaccaagaaaatttagtattacttggagacgaagtttatcagccaaacaatttaccaagatgaacgcccccttcataagtgccagaaaagttttattggatatggggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="80140" stop="78256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79840" g_stop="79761" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="168" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.482" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79435" g_stop="79277" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="327" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79276" i_stop="78842" i_length="435">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78841" g_stop="78668" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="503" r_length="176" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78667" i_stop="78575" i_length="93">
            <donor d_prob="0.975" d_score="0.83"/>
            <acceptor a_prob="0.889" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78574" g_stop="78556" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="523" r_length="20" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E332062" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79840" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79277"/>
          <exon e_start="78841" e_stop="78668"/>
          <exon e_start="78574" e_stop="78556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAAC-ATTTACCAAGATGAGCG-CCCCTTCATAAGTGCAAGAAAGGTACATGTGCAAAGTTTTTGCCTGAAGAATTTATAAGCCAACCAGTATTTTTAGATCCTACATACTCATTATTTTATTCACGAAAATATGAAGGTTTTATTGGATAT-GGGAC</genome_strand>
        <mrna_strand>GCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCCAAACAATTTACCAAGATGAACGCCCCCTTCATAAGTGCCAGAAAA.............................................................................................GTTTTATTGGATATGGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340328" ref_strand="+" ref_description="SGN-E340328 [cTOF-2-I14]">
      <seq>gagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgcagatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtatccactatactcagcttcaatacaattattggggggttctcttgttccttactaccttgaagagactgcaaactggggtcttgatatcaatgaccttcgccaatcagttgcacaggcacgatacaagggaataactgtacgagctatggtgattataaaccctggaaatcccactggacaatgtctttagtgtggcaaatcttaagcaaattattcaattctgtcaccaagaaaatttagtattacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="81619" stop="78430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81319" g_stop="81227" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="159" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="277" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="359" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="447" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.482" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79435" g_stop="79277" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="606" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79276" i_stop="78842" i_length="435">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78841" g_stop="78730" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="719" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E340328" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81319" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79277"/>
          <exon e_start="78841" e_stop="78730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTC-TTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTG</genome_strand>
        <mrna_strand>GAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728927" ref_strand="+" ref_description="SGN-E728927 [LA19BF09]">
      <seq>aaaaagacatcttcaccatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgacgcagatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtagccactatactcagcttcaatacaattattggggggttctcttgttccttactaccttgaagagactgcaaactggggtcttgatatcaatgaccttcgccaatcagttgcacaggcacgatacaagggaataactgtacgagctatggtgattataaaccctggaaagcccactggacaatgtcttagtgtggcaaatcttaagcaaattattcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="80987" stop="78459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="70" r_length="64" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="188" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="270" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="358" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="0.98"/>
            <acceptor a_prob="0.482" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79435" g_stop="79277" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="517" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79276" i_stop="78842" i_length="435">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78841" g_stop="78759" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="600" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E728927" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79277"/>
          <exon e_start="78841" e_stop="78759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATT</genome_strand>
        <mrna_strand>A-CATCTTCACCA-TGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGACGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTAGCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGCTATGGTGATTATAAACCCTGGAAAGCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729605" ref_strand="+" ref_description="SGN-E729605 [LA21CC03]">
      <seq>acctaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgcagatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtatccactatactcagcttcaatacaattattggggggttctcttgttccttactaccttgaagagactgcaaactggggtcttgatatcaatgaccttcgcccaatcagttgcacaggcacgatacaagggaataactgtacgagctatggtgattataaaacctggaaatcccactggacaatgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83537" stop="78491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83237" g_stop="83203" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="236" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="302" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="420" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="502" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="590" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.482" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79435" g_stop="79277" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="750" r_length="160" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="79276" i_stop="78842" i_length="435">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="78841" g_stop="78791" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="801" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E729605" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83237" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79277"/>
          <exon e_start="78841" e_stop="78791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCG-CCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTT</genome_strand>
        <mrna_strand>ACCTAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGCTATGGTGATTATAAAACCTGGAAATCCCACTGGACAATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346715" ref_strand="+" ref_description="SGN-E346715 [cTOF-28-L11]">
      <seq>gagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgcagatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtatccactatactcagcttcaatacaattattggggggttctcttgttccttactaccttgaagagactgcaaactggggtcttgatatcaatgaccttcgccaatcagttgcacaggcacgatacaagggaataactgtacgagctatggtgattataaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="81619" stop="78516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81319" g_stop="81227" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="159" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="277" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="359" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="447" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.482" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79435" g_stop="79277" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="606" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79276" i_stop="78842" i_length="435">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78841" g_stop="78816" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="632" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E346715" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81319" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79277"/>
          <exon e_start="78841" e_stop="78816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACTGTGAGTATGCTGAACTTCTGCTTTCCATTTACATTAAGAAAAATATGGTCTCATGTTTATGTGAATTCCGAGTATAATTCACCAAAGTCAGTTTTATTAGCGACATCAGGCTTGCTGGACGTTCAACCTTCTTTGTCTGTAACCTCAGCCACAACCCCCTCCTCGACCCTCTAGTAACTCCAAGAGAAGAAAAAGAATGGAATATAAAAGAGAGAGCACATGTGGGGCTGAATACTACAAATATTTTCAGAAGTTGGCAAAACTTAAAAAGCTAGTCAATGGGACTGGTTTCTTAATGTGACACATTTAGATATGTCTGCAAATAATAGCGGAATTACTCTTTTGCTTTTAATGCCCTAAAGTATCTGATCCTCTGCATTTATTAGGCATGTCTAACATTAAACTGTACATATATGTTTCTTTGTTTCTGCCTAGGTACGAGCTATGGTGATTATAAACCC</genome_strand>
        <mrna_strand>GAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGCTATGGTGATTATAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345906" ref_strand="+" ref_description="SGN-E345906 [cTOF-24-D23]">
      <seq>ttgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgcagatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtatccactatactcagcttaatacaattatgggggggttctcttgttccttactaccttgaagagactgcnaactggggtcttgatatcaatgaccttcgccaatcagttgcacaggcacgatacaagggaataactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="81706" stop="78976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81406" g_stop="81227" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="246" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="364" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="446" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="534" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.482" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79435" g_stop="79277" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="692" r_length="158" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E345906" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81406" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT</genome_strand>
        <mrna_strand>TTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTT-AATACAATTATGGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCNAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207592" ref_strand="+" ref_description="SGN-E207592 [cLEC-32-M23]">
      <seq>ttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgttaggagaagaagttgcagaattcattgagagacctgatggatatgcaagtgatccagaactcatatttctcacaaatggtgccagcaaaggagtgatgcagatcttgaacagtatcattctcggcccacgtgatgggatatttgtacctgttccccagtatccactatactcagcttcaatacaattattggggggtactcttggtccttactaccttgaagagactgcaaactggggtcttgatatcaatgaccttcgccaatcagttgcacaagcgctatacaagggaataactgtacgagctatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="80741" stop="78966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80441" g_stop="80415" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.897" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="110" r_length="83" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="198" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="0.96"/>
            <acceptor a_prob="0.482" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79435" g_stop="79277" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="357" r_length="159" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E207592" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80441" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGA-AAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT</genome_strand>
        <mrna_strand>TTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTTAGGAGAAGAAGTTGCAGAATTCATTGAGAGACCTGATGGATATGCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAAATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCTCGGCCCACGTGATGGG....................................................................................................................................................ATATTTGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTACTCTTGGTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAAGCGCTATACAAGGGAATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213626" ref_strand="+" ref_description="SGN-E213626 [cLEC-76-C2]">
      <seq>taaattgaacttctcactcaccattcaccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgcagatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtatccactatactcagctttcatacnattattggggggttctcttgntccttactaccntgnagagactgcaaactggggtcttgatatcaatgacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83563" stop="79016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83263" g_stop="83203" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="262" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="328" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="446" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="528" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="616" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.482" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79435" g_stop="79316" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="736" r_length="120" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E213626" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83263" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTT</genome_strand>
        <mrna_strand>TAAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTTCATACNATTATTGGGGGGTTCTCTTGNTCCTTACTACCNTGNAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731300" ref_strand="+" ref_description="SGN-E731300 [LA26CH08]">
      <seq>cactaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgcagatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtatccactatactcagcttcaatacaattattggggggttctcttngtccttactaccttgaagagactgncaactggggtcttgatatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83538" stop="79021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83238" g_stop="83203" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="237" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="303" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="421" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="503" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="591" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.482" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79435" g_stop="79321" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="706" r_length="115" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E731300" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83238" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATG</genome_strand>
        <mrna_strand>CACTAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTNGTCCTTACTACCTTGAAGAGACTGNCAACTGGGGTCTTGATATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727798" ref_strand="+" ref_description="SGN-E727798 [LA15DA12]">
      <seq>ccacgtaaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgccgatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtatccactatactcagcttcaatacaattaattgggggggccctcttgttccttactaccttgaagagactgccaaactggggtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83528" stop="79030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83230" g_stop="83203" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.821"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="228" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="294" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="412" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="494" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="582" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="0.98"/>
            <acceptor a_prob="0.482" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79435" g_stop="79330" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="691" r_length="109" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E727798" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83230" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATT-ATT-GGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTG-CAAACTGGGGTCTTG</genome_strand>
        <mrna_strand>CCACGTA-AACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCCGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTAATTGGGGGGGCCCTCTTGTTCCTTACTACCTTGAAGAGACTGCCAAACTGGGGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317797" ref_strand="+" ref_description="SGN-E317797 [cTOA-30-K22]">
      <seq>ccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgcagatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtatccactatactcagcttcaatacnattattngggggggtctcttgttccttactacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83536" stop="79055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83236" g_stop="83203" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="235" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="301" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="419" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="501" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="589" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.482" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79435" g_stop="79355" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="671" r_length="82" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E317797" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83236" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATT-GGGGGGTTCTCTTGTTCCTTACTACCTT</genome_strand>
        <mrna_strand>CCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACNATTATTNGGGGGGGTCTCTTGTTCCTTACTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343300" ref_strand="+" ref_description="SGN-E343300 [cTOF-17-B6]">
      <seq>tttcatcttggaatttatgtcttcacacttggccacatatacaaataataatatactataattatccccttttcctttacaccccaataaaaaataaattgaacttctcactcaccattcaccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatngcagatcttgaacagtatcattcgcggcccaagtgatgggantattggtacctgttccccagtatccactatactcagcttcatacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83657" stop="79087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83357" g_stop="83203" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="357" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="423" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="541" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="623" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="712" r_length="89" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="0.96"/>
            <acceptor a_prob="0.482" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79435" g_stop="79387" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="761" r_length="49" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E343300" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83357" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTGGAATTTATGTCTTCACACTTGGCCACATATACAAATAATAATATACTATAATTATCCCCTTTTCCTTTACACCCCAATAAAAAATAAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAG-AGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGAT-GCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGA-TATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAAT</genome_strand>
        <mrna_strand>TTTCATCTTGGAATTTATGTCTTCACACTTGGCCACATATACAAATAATAATATACTATAATTATCCCCTTTTCCTTTACACCCCAATAAAAAATAAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATNGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ANTATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTC-ATACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317752" ref_strand="+" ref_description="SGN-E317752 [cTOA-30-K17]">
      <seq>ccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgcagatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctgttccccagtatccactatactcagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83536" stop="79095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83236" g_stop="83203" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="235" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="301" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="419" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="501" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="589" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.482" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79435" g_stop="79395" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="630" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E317752" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83236" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTC</genome_strand>
        <mrna_strand>CCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365245" ref_strand="+" ref_description="SGN-E365245 [cLPT-16-K15]">
      <seq>ccagtacgggcatcactttgcttggaatttgaactaggaggagaattttgattccttataatgtcttcaaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagcttaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgcagatcttgaacagtatcattcgcggcccaagtgatgggatattggtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="81703" stop="79281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81403" g_stop="81227" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="243" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="361" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="443" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79671" g_stop="79584" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="531" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.482" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79435" g_stop="79423" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="544" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E365245" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81403" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79584"/>
          <exon e_start="79435" e_stop="79423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGGTAACTGATAATTTGATATGAATAGCAAGATTTTCCTCTTCATATTTTCCGTCTCCTTTCATATATCTTGTTTTTAACTTAGATAACTCCAGGTTTTTATCTTTTACATGCATTATCATACTCTTAATGAGTGCATATTTGTTGCTAGATATTGGTACCTG</genome_strand>
        <mrna_strand>CCAGTACGGGCATCACTTTGCTTGGAATTTGAACTAGGAGGAGAATTTTGATTCCTTATAATGTCTTCAAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCTTAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG....................................................................................................................................................ATATTGGTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366618" ref_strand="+" ref_description="SGN-E366618 [cLPT-17-A3]">
      <seq>ctgactcacaacacttgcctcctaactgtgttttgagccaaggtgctacattgccagtacgggcatcactttgcttggaatttgaactaagaggaaaattttgattccttataatgtcttcaaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagctaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgcagatcttgaacagtatcattcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83531" stop="79298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83231" g_stop="83203" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="230" r_length="201" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="296" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="414" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="496" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79598" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="570" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E366618" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83231" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCG</genome_strand>
        <mrna_strand>CTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCAAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTGAACTAAGAGGAAAATTTTGATTCCTTATAATGTCTTCAAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCTAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214869" ref_strand="+" ref_description="SGN-E214869 [cLEC-78-C6]">
      <seq>caccattcaccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaaagtgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgcagatcttgaacagtatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83545" stop="79302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83245" g_stop="83203" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="244" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="310" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="428" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="510" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79602" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="580" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E214869" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83245" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATT</genome_strand>
        <mrna_strand>CACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAAGTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725564" ref_strand="+" ref_description="SGN-E725564 [LA04AC10]">
      <seq>attcaccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcacagatggtgccagcaaaggagtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83541" stop="79322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83241" g_stop="83203" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="240" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="306" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="424" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="506" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79622" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="556" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E725564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83241" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGC</genome_strand>
        <mrna_strand>ATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330337" ref_strand="+" ref_description="SGN-E330337 [cTOD-4-L10]">
      <seq>acacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaacaggaaaattttaattccttataatgccttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtgccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaagtgcttatagtgactcccgacgcattcctggtgtaaggaaagaagttgcacaattcattgagagacgtgatggatatccaagtgatccaaaactcatatttctcacagatggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83521" stop="79339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83221" g_stop="83203" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="220" r_length="201" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="286" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="404" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="486" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79639" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="519" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E330337" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83221" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCACAGATGGTGC</genome_strand>
        <mrna_strand>ACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAACAGGAAAATTTTAATTCCTTATAATGCCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTGCCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGACGCATTCCTGGTGTAAGGAAAGAAGTTGCACAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAAAACTCATATTTCTCACAGATGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358642" ref_strand="+" ref_description="SGN-E358642 [cLHT-22-C24]">
      <seq>gactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaatttgaactaagaggaaaattttaattccttaaaatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagctaaacagttaattgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatatttctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83529" stop="79348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83229" g_stop="83203" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="228" r_length="201" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="294" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="412" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="494" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79648" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="518" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E358642" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83229" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATATTTCTCAC</genome_strand>
        <mrna_strand>GACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTGAACTAAGAGGAAAATTTTAATTCCTTAAAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCTAAACAGTTAATTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATATTTCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297310" ref_strand="+" ref_description="SGN-E297310 [cLET-29-D12]">
      <seq>aattgaacttctcactcaccattcaccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggatatccaagtgatccagaactcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83561" stop="79355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83261" g_stop="83203" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="260" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="326" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="444" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="526" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79655" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="543" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E297310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83261" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATCCAGAACTCATAT</genome_strand>
        <mrna_strand>AATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATCCAGAACTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726067" ref_strand="+" ref_description="SGN-E726067 [LA10AG11]">
      <seq>cactcaccattcaccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaaagttgcagactcattgagagacgtgatggatatccaagtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83549" stop="79458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83249" g_stop="83203" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="248" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="314" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="432" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79761" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="514" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89">
            <donor d_prob="0.732" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79671" g_stop="79667" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="519" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E726067" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83249" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79761"/>
          <exon e_start="79671" e_stop="79667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAG-AAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAGGTTGGGTTGCTCGTTCCATTCTACCTGCTCTGGTTTGATGTTCTCAAAAGTTGATTATATAACTGATATCTAGTTATTTTGTTTGACAGTGATC</genome_strand>
        <mrna_strand>CACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAAGTTGCAG-ACTCATTGAGAGACGTGATGGATATCCAAG.........................................................................................TGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291443" ref_strand="+" ref_description="SGN-E291443 [cLET-2-A22]">
      <seq>cactcaccattcaccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagaattcattgagagacgtgatggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83549" stop="79467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83249" g_stop="83203" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="248" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="314" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="432" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79767" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="508" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E291443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83249" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATA</genome_strand>
        <mrna_strand>CACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266648" ref_strand="-" ref_description="SGN-E266648 [cLEI-5-G16]">
      <seq>aatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaaggaaagaagttgcagacctgcagcccgggggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="81616" stop="79486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81316" g_stop="81227" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="156" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="274" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79842" g_stop="79791" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="326" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E266648" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266648" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81316" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGA</genome_strand>
        <mrna_strand>AATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358917" ref_strand="+" ref_description="SGN-E358917 [cLHT-24-K2]">
      <seq>gcatattctttgtgtgttttaattggatcgatataatatagattttctctttcatctgctatgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaatttgaactaagaggaaaattttaattccttaaaatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagctaaacagttaattgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgtaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83459" stop="79505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83159" g_stop="83094" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83093" i_stop="81428" i_length="1666">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="265" r_length="201" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="331" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="449" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.897" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79805" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="487" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E358917" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83159" e_stop="83094"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGG</genome_strand>
        <mrna_strand>GCATATTCTTTGTGTGTTTTAATTGGATCGATATAA--TATAGATTTTCTCTTTCATCTGCTATGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTGAACTAAGAGGAAAATTTTAATTCCTTAAAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCTAAACAGTTAATTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366946" ref_strand="+" ref_description="SGN-E366946 [cLPT-6-C4]">
      <seq>tggtttcatcttggaatttatgtcttcacacttggccacatatacaaataataatatactataattatccccttttcctttacaccccaataaaaaataaattgcacttctcactcaccattcaccaaactgactcacaacacttgcctcctaactgtgttttgagccaaggtgctacattgccagtacgggcatcactttgcttggaatttgaactaagaggaaaattttgattccttataatgtcttcaaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagctaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83660" stop="79509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83360" g_stop="83203" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="359" r_length="201" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="425" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="543" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79809" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="577" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E366946" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83360" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTCATCTTGGAATTTATGTCTTCACACTTGGCCACATATACAAATAATAATATACTATAATTATCCCCTTTTCCTTTACACCCCAATAAAAAATAAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGT</genome_strand>
        <mrna_strand>TGGTTTCATCTTGGAATTTATGTCTTCACACTTGGCCACATATACAAATAATAATATACTATAATTATCCCCTTTTCCTTTACACCCCAATAAAAAATAAATTGCACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCAAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTGAACTAAGAGGAAAATTTTGATTCCTTATAATGTCTTCAAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCTAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357162" ref_strand="+" ref_description="SGN-E357162 [cLHT-17-L19]">
      <seq>accaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaatttgaactaagaggaaaattttaattccttaaaatgtcttgtaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcacaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagctaaacatttaattgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83537" stop="79509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83237" g_stop="83203" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="236" r_length="201" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="302" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="420" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.897" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79809" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="454" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E357162" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83237" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGT</genome_strand>
        <mrna_strand>ACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTGAACTAAGAGGAAAATTTTAATTCCTTAAAATGTCTTGTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCACAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCTAAACATTTAATTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214460" ref_strand="+" ref_description="SGN-E214460 [cLEC-77-L7]">
      <seq>taaattgaacttctcactcaccattcaccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgactttctggagtctangtgcttatagtgactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83563" stop="79526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83263" g_stop="83203" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="262" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="328" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="446" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.897" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79826" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="463" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E214460" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83263" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGAC-TTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCC</genome_strand>
        <mrna_strand>TAAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTTCTGGA-GTCTAN............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286582" ref_strand="+" ref_description="SGN-E286582 [cLES-12-K9]">
      <seq>aaattgaacttctcactcaccattcaccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttctggaggtctaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83562" stop="80113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83262" g_stop="83203" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="261" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="327" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="445" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E286582" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83262" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG</genome_strand>
        <mrna_strand>AAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357258" ref_strand="+" ref_description="SGN-E357258 [cLHT-17-L18]">
      <seq>accaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaatttgaactaagaggaaaattttaattccttaaaatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcaagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagctaaacagttaattgggatgacttctggaggtctaggtgcttatagtgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83537" stop="80113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83237" g_stop="83203" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="236" r_length="201" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="302" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="420" r_length="118" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E357258" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83237" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG</genome_strand>
        <mrna_strand>ACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTGAACTAAGAGGAAAATTTTAATTCCTTAAAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCAAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCTAAACAGTTAATTGGGATGACTTCTGGAGGTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330525" ref_strand="+" ref_description="SGN-E330525 [cTOD-8-C13]">
      <seq>accaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83537" stop="80125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83237" g_stop="83203" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="236" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="302" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80425" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="410" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E330525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83237" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCT</genome_strand>
        <mrna_strand>ACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281002" ref_strand="+" ref_description="SGN-E281002 [cLER-7-D17]">
      <seq>ccaaactgactcacaacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83536" stop="80125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83236" g_stop="83203" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="235" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="301" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80425" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="409" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E281002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83236" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCT</genome_strand>
        <mrna_strand>CCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249622" ref_strand="+" ref_description="SGN-E249622 [cLEF-56-K6]">
      <seq>aacacttgcctcctaacctgtgttttgagccgaggtgcctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgccccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagtttcttgggatgacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83522" stop="80125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83222" g_stop="83203" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="223" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="290" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80425" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="398" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E249622" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83222" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTGCCTCCTAAC-TGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTG-CTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATG-CCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCT</genome_strand>
        <mrna_strand>AACACTTGCCTCCTAACCTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292333" ref_strand="+" ref_description="SGN-E292333 [cLET-1-C2]">
      <seq>aacacttgcctcctaactgtgttttgagccgaggtgctacattgccagtacgggcatcactttgcttggaattttaactaagaggaaaattttaattccttataatgtcttctaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggggagctgtaccttcaagcttctgagcttcataaggaaggcaaaaagatcatcttccccaatgttgggaacccccatgcccttgggcagaaaccactgacattttcacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagccaaacagcttcttgggatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83522" stop="80128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83222" g_stop="83203" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="221" r_length="201" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="287" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80428" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="392" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E292333" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83222" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACT</genome_strand>
        <mrna_strand>AACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGGGAGCTGTACCTTCAAGCTTCTGAGCTTCATAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCCCCAATGTTGGGAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTTCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGCTTCTTGGGATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547505" ref_strand="+" ref_description="SGN-E547505 [TUS-71-G18]">
      <seq>acagtacaagatggactccatttattacaaacagctgtcggggaagagagcattgcttgaatctgatgcacttctgaatgaagatcccagaacaaaggactttatccagaagtttggtgacgatgaaaacggatggttcattaagtttggtaaggccatgaacaagttgacttcaatacaagtgctcacgggagaccaggggcagatcaggaaacaatgccggtttgtcaactgaaaactagatataagtctctaacatgcaacaaaattgaattggttcttcatttcattttccccccttagaagctcataggactaatttaacaaacatatatagatggtgcatgagagctgtaggttgctcatctgcagcaaattaaacaccatgtacaaagcaattttttgactcaaatgaaatcacaattttttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91544" stop="90513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91244" g_stop="90804" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E547505" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91244" e_stop="90804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTACAAGATGGACTCCGTTTATTACAAACAGCTGTCGGGGAAGAGAGCATTGCTTGAATCTGATGCACTTTTGAATGAAGATCCCAGAACAAAGGACTTCATCCAGAAGTTTGGTGACGATGAAAACGGATGGTTCATTAAGTTTGGTAAGGCCATGAATAAGTTGACTTCAATACAAGTGCTCACGGGAGACCAGGGGCAGATCAGGAAACAATGCCGGTTTGTCAACTGAAAACTAGATATAAGTCTCTAACATGCAACAAAATCGAATTGGTTCTTCACTTCATTTTCCCCCCTTAGAAGCTCATAGGACTAATTTAACAAACATATGTAGATGGTGCATGACAGCTGTAGGTTACTCATCTGCAGCAAATTAAACACCATGTACAAAGCTATTTTTTGACTCAAATGAAATCACAATTTTTTGAACTTCTCCAT</genome_strand>
        <mrna_strand>ACAGTACAAGATGGACTCCATTTATTACAAACAGCTGTCGGGGAAGAGAGCATTGCTTGAATCTGATGCACTTCTGAATGAAGATCCCAGAACAAAGGACTTTATCCAGAAGTTTGGTGACGATGAAAACGGATGGTTCATTAAGTTTGGTAAGGCCATGAACAAGTTGACTTCAATACAAGTGCTCACGGGAGACCAGGGGCAGATCAGGAAACAATGCCGGTTTGTCAACTGAAAACTAGATATAAGTCTCTAACATGCAACAAAATTGAATTGGTTCTTCATTTCATTTTCCCCCCTTAGAAGCTCATAGGACTAATTTAACAAACATATATAGATGGTGCATGAGAGCTGTAGGTTGCTCATCTGCAGCAAATTAAACACCATGTACAAAGCAATTTTTTGACTCAAATGAAATCACAATTTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549422" ref_strand="+" ref_description="SGN-E549422 [TUS-70-E9](-)">
      <seq>ttgaactcattgacgagatcaaggctgagctgagggcagaatgccctggcatagtctcatgctctgatcttttggtatactgtcaaggggatgcctttgttgtatcaggtgtccctcactacgacgtgcctggtggacgtcgtgatggaatggaatcccttgaagcaaatgttattggaaacctcccgcttcctgataatacagtggacaagatgattgacctgttcaaaaagaaaggcctgactgaagaggatttggttgtcctaattggtgcccactccattggagtagcccactgtttcagcttccgttacagagtggatgatccagtgaaggctactatggtagatccaagactcgcgggagttgtgaaattcgcatgtaccaccccaatgagtactctggcttttgataccaccacacagtacaagatggactccatttattacaaacagctgtcggggaagagagcattgcttgaatctgatgcacttctgaatgaagatcccagaacaaaggactttatccagaagtttggtgacgatgaaaacggatggttcattaagtttggtaaggccatgaacaagttgacttcaatacaagtgctcacgggagaccaggggcagatcaggaaacaatgccggtttgtcaactgaaaactagatataagtctctaacatgcaacaaaattgaattggttcttcatttcattttccccccttagaagctcataggactaatttaacaaacatatatagatggtgcatgagagctgtaggttgctcatctgcagcaaattaaacaccatgtacaaagcaattttttgactcaaatgaaatcacaatttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91965" stop="90513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91665" g_stop="90805" g_length="861"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="860" r_length="860" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E549422" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91665" e_stop="90805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACTCATTGACGAGATCAAGGCTGAGCTTGAGGCAGAATGCCCTGGCATAGTCTCATGCTCTGATCTTTTGGTATACTTGTCAA-GGGATGCATTTGTTGTATCAGGTGTCCCTTACTACGACGTGCCTGGTGGACGTCGTGATGGAATGGAATCCCTTGAAGCTAATGTTATTGGAAACCTCCCACTTCCTGATAATACAGTGGACAAGATGATTGACCTGTTTAAAAAGAAAGGCCTGACTGAAGAGGATTTGGTTGTCCTAATTGGTGCCCACTCCATTGGAGTAGCCCACTGTTTCAGCTTCCGTTACAGAGTGGATAATCCAGTGAAGGCTACTATGGTAGATCCAAGACTCGCGGGAGTTATGAAATTCACATGTACCACCCCAATGAGTACTCTGGCTTTTGATACCACCACACAGTACAAGATGGACTCCGTTTATTACAAACAGCTGTCGGGGAAGAGAGCATTGCTTGAATCTGATGCACTTTTGAATGAAGATCCCAGAACAAAGGACTTCATCCAGAAGTTTGGTGACGATGAAAACGGATGGTTCATTAAGTTTGGTAAGGCCATGAATAAGTTGACTTCAATACAAGTGCTCACGGGAGACCAGGGGCAGATCAGGAAACAATGCCGGTTTGTCAACTGAAAACTAGATATAAGTCTCTAACATGCAACAAAATCGAATTGGTTCTTCACTTCATTTTCCCCCCTTAGAAGCTCATAGGACTAATTTAACAAACATATGTAGATGGTGCATGACAGCTGTAGGTTACTCATCTGCAGCAAATTAAACACCATGTACAAAGCTATTTTTTGACTCAAATGAAATCACAATTTTTTGAACTTCTCCA</genome_strand>
        <mrna_strand>TTGAACTCATTGACGAGATCAAGGCTGAGCTGAGGGCAGAATGCCCTGGCATAGTCTCATGCTCTGATCTTTTGGTATACT-GTCAAGGGGATGCCTTTGTTGTATCAGGTGTCCCTCACTACGACGTGCCTGGTGGACGTCGTGATGGAATGGAATCCCTTGAAGCAAATGTTATTGGAAACCTCCCGCTTCCTGATAATACAGTGGACAAGATGATTGACCTGTTCAAAAAGAAAGGCCTGACTGAAGAGGATTTGGTTGTCCTAATTGGTGCCCACTCCATTGGAGTAGCCCACTGTTTCAGCTTCCGTTACAGAGTGGATGATCCAGTGAAGGCTACTATGGTAGATCCAAGACTCGCGGGAGTTGTGAAATTCGCATGTACCACCCCAATGAGTACTCTGGCTTTTGATACCACCACACAGTACAAGATGGACTCCATTTATTACAAACAGCTGTCGGGGAAGAGAGCATTGCTTGAATCTGATGCACTTCTGAATGAAGATCCCAGAACAAAGGACTTTATCCAGAAGTTTGGTGACGATGAAAACGGATGGTTCATTAAGTTTGGTAAGGCCATGAACAAGTTGACTTCAATACAAGTGCTCACGGGAGACCAGGGGCAGATCAGGAAACAATGCCGGTTTGTCAACTGAAAACTAGATATAAGTCTCTAACATGCAACAAAATTGAATTGGTTCTTCATTTCATTTTCCCCCCTTAGAAGCTCATAGGACTAATTTAACAAACATATATAGATGGTGCATGAGAGCTGTAGGTTGCTCATCTGCAGCAAATTAAACACCATGTACAAAGCAATTTTTTGACTCAAATGAAATCACAA-TTTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547504" ref_strand="+" ref_description="SGN-E547504 [TUS-71-G18](-)">
      <seq>acagtacaagatggactccatttattacaaacagctgtcggggaagagagcattgcttgaatctgatgcacttctgaatgaagatcccagaacaaaggactttatccagaagtttggtgacgatgaaaacggatggttcattaagtttggtaaggccatgaacaagttgacttcaatacaagtgctcacgggagaccaggggcagatcaggaaacaatgccggtttgtcaactgaaaactagatataagtctctaacatgcaacaaaattgaattggttcttcatttcattttccccccttagaagctcataggactaatttaacaaacatatatagatggtgcatgagagctgtaggttgctcatctgcagcaaattaaacaccatgtacaaagcaattttttgactcaaatgaaatcacaatttttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91544" stop="90513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91244" g_stop="90805" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E547504" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91244" e_stop="90805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTACAAGATGGACTCCGTTTATTACAAACAGCTGTCGGGGAAGAGAGCATTGCTTGAATCTGATGCACTTTTGAATGAAGATCCCAGAACAAAGGACTTCATCCAGAAGTTTGGTGACGATGAAAACGGATGGTTCATTAAGTTTGGTAAGGCCATGAATAAGTTGACTTCAATACAAGTGCTCACGGGAGACCAGGGGCAGATCAGGAAACAATGCCGGTTTGTCAACTGAAAACTAGATATAAGTCTCTAACATGCAACAAAATCGAATTGGTTCTTCACTTCATTTTCCCCCCTTAGAAGCTCATAGGACTAATTTAACAAACATATGTAGATGGTGCATGACAGCTGTAGGTTACTCATCTGCAGCAAATTAAACACCATGTACAAAGCTATTTTTTGACTCAAATGAAATCACAATTTTTTGAACTTCTCCA</genome_strand>
        <mrna_strand>ACAGTACAAGATGGACTCCATTTATTACAAACAGCTGTCGGGGAAGAGAGCATTGCTTGAATCTGATGCACTTCTGAATGAAGATCCCAGAACAAAGGACTTTATCCAGAAGTTTGGTGACGATGAAAACGGATGGTTCATTAAGTTTGGTAAGGCCATGAACAAGTTGACTTCAATACAAGTGCTCACGGGAGACCAGGGGCAGATCAGGAAACAATGCCGGTTTGTCAACTGAAAACTAGATATAAGTCTCTAACATGCAACAAAATTGAATTGGTTCTTCATTTCATTTTCCCCCCTTAGAAGCTCATAGGACTAATTTAACAAACATATATAGATGGTGCATGAGAGCTGTAGGTTGCTCATCTGCAGCAAATTAAACACCATGTACAAAGCAATTTTTTGACTCAAATGAAATCACAATTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360099" ref_strand="+" ref_description="SGN-E360099 [cLPP-14-C2]">
      <seq>cagtacaagatggactccatttattacaaacagctgtcggggaagagagcattgcttgaatctgatgcacttctgaatgaagatcccagaacaaaggactttatccagaagtttggtgacgatgaaaacggatggttcattaagtttggtaaggccatgaacaagttgacttcaatacaagtgctcacgggagaccaggggcagatcaggaaacaatgccggttttgtcaactgaaaactagatataagtctctaacatgcaacaaaattgaattggttcttcatttcattttccccccttaaaagctcataggactaatttaacaaacatatatagatggtgcatgagagctgtaggttgctcatctgcagcaaatttaacaccatgttccaaagcaattttttgactcaaatgaaatcacaattttttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91543" stop="90513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91243" g_stop="90813" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="443"/>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E360099" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91243" e_stop="90813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACAAGATGGACTCCGTTTATTACAAACAGCTGTCGGGGAAGAGAGCATTGCTTGAATCTGATGCACTTTTGAATGAAGATCCCAGAACAAAGGACTTCATCCAGAAGTTTGGTGACGATGAAAACGGATGGTTCATTAAGTTTGGTAAGGCCATGAATAAGTTGACTTCAATACAAGTGCTCACGGGAGACCAGGGGCAGATCAGGAAACAATGCCGG-TTTGTCAACTGAAAACTAGATATAAGTCTCTAACATGCAACAAAATCGAATTGGTTCTTCACTTCATTTTCCCCCCTTAGAAGCTCATAGGACTAATTTAACAAACATATGTAGATGGTGCATGACAGCTGTAGGTTACTCATCTGCAGCAAATTAAACACCATG-TACAAAGCTATTTTTTGACTCAAATGAAATCACAATTTTTTGAA</genome_strand>
        <mrna_strand>CAGTACAAGATGGACTCCATTTATTACAAACAGCTGTCGGGGAAGAGAGCATTGCTTGAATCTGATGCACTTCTGAATGAAGATCCCAGAACAAAGGACTTTATCCAGAAGTTTGGTGACGATGAAAACGGATGGTTCATTAAGTTTGGTAAGGCCATGAACAAGTTGACTTCAATACAAGTGCTCACGGGAGACCAGGGGCAGATCAGGAAACAATGCCGGTTTTGTCAACTGAAAACTAGATATAAGTCTCTAACATGCAACAAAATTGAATTGGTTCTTCATTTCATTTTCCCCCCTTAAAAGCTCATAGGACTAATTTAACAAACATATATAGATGGTGCATGAGAGCTGTAGGTTGCTCATCTGCAGCAAATTTAACACCATGTTCCAAAGCAATTTTTTGACTCAAATGAAATCACAATTTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364282" ref_strand="+" ref_description="SGN-E364282 [cLPP-20-E12]">
      <seq>tgatggaatggaatcccttgaagcaaatgttattggaaacctcccgcttcctgattatacagtggacaagatgattgacctgttcaaaaagaaaggcctgactgaagaggatttggttgtcctaattggtgcccactccattggagtagcccactgtttcagcttccgttacagagtggatgatccagtgaaggctactatggtagatccaagactcgcgggagttgtgaaattcgcatgtaccaccccaatgagtactctggcttttgataccaccacacagtacaagatggactccatttattacaaacagctgtcgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91823" stop="90902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91523" g_stop="91202" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E364282" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91523" e_stop="91202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGAATGGAATCCCTTGAAGCTAATGTTATTGGAAACCTCCCACTTCCTGATAATACAGTGGACAAGATGATTGACCTGTTTAAAAAGAAAGGCCTGACTGAAGAGGATTTGGTTGTCCTAATTGGTGCCCACTCCATTGGAGTAGCCCACTGTTTCAGCTTCCGTTACAGAGTGGATAATCCAGTGAAGGCTACTATGGTAGATCCAAGACTCGCGGGAGTTATGAAATTCACATGTACCACCCCAATGAGTACTCTGGCTTTTGATACCACCACACAGTACAAGATGGACTCCGTTTATTACAAACAGCTGTCGGGG</genome_strand>
        <mrna_strand>TGATGGAATGGAATCCCTTGAAGCAAATGTTATTGGAAACCTCCCGCTTCCTGATTATACAGTGGACAAGATGATTGACCTGTTCAAAAAGAAAGGCCTGACTGAAGAGGATTTGGTTGTCCTAATTGGTGCCCACTCCATTGGAGTAGCCCACTGTTTCAGCTTCCGTTACAGAGTGGATGATCCAGTGAAGGCTACTATGGTAGATCCAAGACTCGCGGGAGTTGTGAAATTCGCATGTACCACCCCAATGAGTACTCTGGCTTTTGATACCACCACACAGTACAAGATGGACTCCATTTATTACAAACAGCTGTCGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546747" ref_strand="+" ref_description="SGN-E546747 [TUS-70-E9]">
      <seq>ggaaggcgaggattttcgctggtctttttcttatttgcattgtcctcccttcgctggcctcagcgtttgtagatcatctacctgaagttggccaagtaaacgataacaatgatgtaccgatccatgttagtactgttgctcacttcagcgaaaatcaagttaaggaggcattgataagaagggcaaaggcagtgcaagatctgtgggcaaattttggtaatgatgataagaatgatgtagctaaagaagatgctgcacctgtaactccaacgcctgttgattcaacacctacaactacacctgttgatccaactccaacgcctgttgatccaacacctaatcctgggcctgttaaccctgttccagctgatccaacacctaatcctgtgcctgctaacaatgtacctgcaggatatccaggagcaactcaagggccgcctgtggcgatgggatatgggggtgcacctataacacaaaatccatcagaccaacaaactgtgcctgaacaggcaggtgctgctcagaaccatccaacaccggaagaaattaaagagcagcgcaaacatgctggattacaagtgggattttacgataacacttgcccgaatgctgagaagatcattaaggatggaatgaacagagcttttgggaatgattccagcatggctgctccaattgggcgtcttctgttccatgattgctttgtcaatggatgtgatgcgtctatactcttagacaagacaccaagtggtgcaagggtagaaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="92893" stop="91398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92593" g_stop="91884" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91883" i_stop="91757" i_length="127">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91756" g_stop="91697" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="770" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E546747" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92593" e_stop="91884"/>
          <exon e_start="91756" e_stop="91697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGCGAGGATTTTCGCTGGTCTTTTTCTTATTTGCATTGTCCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAAGCAAGTTAAGGAGGCAATGATAAGAAGGGCAAAGGCAGTGCATGATCTGTGGGCAAATTTTGGTAATAATGATAAGGATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTGCAGGATATCCAGGAGCAACTCAAGGGCCGCCTGTGGCGATGGGATATGGGGGTGCACCTATAACACAAAATCCATCAGACCAACAAACTGTGCCTGAACAGGCAGGTGCTGCTCAGAACCATCCAACACCGGAAGAAATTAAAGAGCAGCGCAAACATGCTGGATTACAAGTGGGATTTTACGATAGCACTTGCCCGAATGCTGAGAAGATCATTAAGGATGGAATGAACAGAGCTTTTGGGAATGATTCCAGCATGGCTGCTCCAATTGGGCGTCTTCTGTTCCATGATTGCTTTGTCAATGTAAGTTTTCAGTGTGCAGATTCTACAATGTACACCTCTGAAAATAGGTTTTGCTATGCTTTCTTAACAATGACAACCAAAAGAAACCCTTAAAAGTTTCATGAAAATTCATTTATCTAATGTACAGGGATGTGATGCGTCTATACTCTTAGACAAGACACCAAGTGGTGCAAGGGTAGAAAAACTC</genome_strand>
        <mrna_strand>GGAAGGCGAGGATTTTCGCTGGTCTTTTTCTTATTTGCATTGTCCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAATCAAGTTAAGGAGGCATTGATAAGAAGGGCAAAGGCAGTGCAAGATCTGTGGGCAAATTTTGGTAATGATGATAAGAATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTGCAGGATATCCAGGAGCAACTCAAGGGCCGCCTGTGGCGATGGGATATGGGGGTGCACCTATAACACAAAATCCATCAGACCAACAAACTGTGCCTGAACAGGCAGGTGCTGCTCAGAACCATCCAACACCGGAAGAAATTAAAGAGCAGCGCAAACATGCTGGATTACAAGTGGGATTTTACGATAACACTTGCCCGAATGCTGAGAAGATCATTAAGGATGGAATGAACAGAGCTTTTGGGAATGATTCCAGCATGGCTGCTCCAATTGGGCGTCTTCTGTTCCATGATTGCTTTGTCAAT...............................................................................................................................GGATGTGATGCGTCTATACTCTTAGACAAGACACCAAGTGGTGCAAGGGTAGAAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360864" ref_strand="+" ref_description="SGN-E360864 [cLPP-7-N4]">
      <seq>gttgatccaactccaacgcctgttgatccaacacctaatcctgggcctgttaaccctgttccagctgatccaacacctaatcctgtgcctgctaacaatgtacctgcaggatatccaggagcaactcaagggccgcctgtggcgatgggatatgggggtgcacctataacacaaaatccatcagaccaacaaactgtgcctgaacaggcaggtgctgctcagaaccatccaacaccggaagaaattaaagagcagcgcaaacatgctggattacaagtgggattttacgataacacttgcccgaatgctgagaagatcattaaggatggaatgaacagagcttttgggaatgattccagcatggctgctccaattgggcgtcttctgttccatgattgctttgtcaatggatgtgatgcgtctatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="92591" stop="91436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92291" g_stop="91884" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91883" i_stop="91757" i_length="127">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91756" g_stop="91736" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="429" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E360864" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92291" e_stop="91884"/>
          <exon e_start="91756" e_stop="91736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTGCAGGATATCCAGGAGCAACTCAAGGGCCGCCTGTGGCGATGGGATATGGGGGTGCACCTATAACACAAAATCCATCAGACCAACAAACTGTGCCTGAACAGGCAGGTGCTGCTCAGAACCATCCAACACCGGAAGAAATTAAAGAGCAGCGCAAACATGCTGGATTACAAGTGGGATTTTACGATAGCACTTGCCCGAATGCTGAGAAGATCATTAAGGATGGAATGAACAGAGCTTTTGGGAATGATTCCAGCATGGCTGCTCCAATTGGGCGTCTTCTGTTCCATGATTGCTTTGTCAATGTAAGTTTTCAGTGTGCAGATTCTACAATGTACACCTCTGAAAATAGGTTTTGCTATGCTTTCTTAACAATGACAACCAAAAGAAACCCTTAAAAGTTTCATGAAAATTCATTTATCTAATGTACAGGGATGTGATGCGTCTATACTC</genome_strand>
        <mrna_strand>GTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTGCAGGATATCCAGGAGCAACTCAAGGGCCGCCTGTGGCGATGGGATATGGGGGTGCACCTATAACACAAAATCCATCAGACCAACAAACTGTGCCTGAACAGGCAGGTGCTGCTCAGAACCATCCAACACCGGAAGAAATTAAAGAGCAGCGCAAACATGCTGGATTACAAGTGGGATTTTACGATAACACTTGCCCGAATGCTGAGAAGATCATTAAGGATGGAATGAACAGAGCTTTTGGGAATGATTCCAGCATGGCTGCTCCAATTGGGCGTCTTCTGTTCCATGATTGCTTTGTCAAT...............................................................................................................................GGATGTGATGCGTCTATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365111" ref_strand="+" ref_description="SGN-E365111 [cLPP-17-C8]">
      <seq>tcgctggtctttttcttatttgcattgtcctcccttcgctggcctcagcgtttgtagatcatctacctgaagttggccaagtaaacgataacaatgatgtaccgatccatgttagtactgttgctcacttcagcgaaaatcaagttaaggaggcattgataagaagggcaaaggcagtgcaagatctgtgggcaaattttggtaatgatgataagaatgatgtagctaaagaagatgctgcacctgtaactccaacgcctgttgattcaacacctacaactacacctgttgatccaactccaacgcctgttgatccaacacctaatcctgggcctgttaaccctgttccagctgatccaacacctaatcctgtgcctgctaacaatgtacctgcaggatatccaggagcaactcaagggccgcctgtggcgatgggatatgggggtgcacctataacacanaatccatcagaccaacaaactgtgcctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="92878" stop="91787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92578" g_stop="92087" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E365111" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92578" e_stop="92087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTGGTCTTTTTCTTATTTGCATTGTCCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAAGCAAGTTAAGGAGGCAATGATAAGAAGGGCAAAGGCAGTGCATGATCTGTGGGCAAATTTTGGTAATAATGATAAGGATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTGCAGGATATCCAGGAGCAACTCAAGGGCCGCCTGTGGCGATGGGATATGGGGGTGCACCTATAACACAAAATCCATCAGACCAACAAACTGTGCCTGAAC</genome_strand>
        <mrna_strand>TCGCTGGTCTTTTTCTTATTTGCATTGTCCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAATCAAGTTAAGGAGGCATTGATAAGAAGGGCAAAGGCAGTGCAAGATCTGTGGGCAAATTTTGGTAATGATGATAAGAATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTGCAGGATATCCAGGAGCAACTCAAGGGCCGCCTGTGGCGATGGGATATGGGGGTGCACCTATAACACANAATCCATCAGACCAACAAACTGTGCCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361077" ref_strand="+" ref_description="SGN-E361077 [cLPP-13-E4]">
      <seq>gaggattttcgctggtctttttcttatttgcattgtcctcccttcgctggcctcagcgtttgtagatcatctacctgaagttggccaagtaaacgataacaatgatgtaccgatccatgttagtactgttgctcacttcagcgaaaatcaagttaaggaggcattgataagaagggcaaaggcagtgcaagatctgtgggcaaattttggtaatgatgataagaatgatgtagctaaagaagatgctgcacctgtaactccaacgcctgttgattcaacacctacaactacacctgttgatccaactccaacgcctgttgatccaacacctaatcctgggcctgttaaccctgttccagctgatccaacacctaatcctgtgcctgctaacaatgtacctgcaggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="92886" stop="91879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92586" g_stop="92179" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E361077" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92586" e_stop="92179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATTTTCGCTGGTCTTTTTCTTATTTGCATTGTCCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAAGCAAGTTAAGGAGGCAATGATAAGAAGGGCAAAGGCAGTGCATGATCTGTGGGCAAATTTTGGTAATAATGATAAGGATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTGCAGGATA</genome_strand>
        <mrna_strand>GAGGATTTTCGCTGGTCTTTTTCTTATTTGCATTGTCCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAATCAAGTTAAGGAGGCATTGATAAGAAGGGCAAAGGCAGTGCAAGATCTGTGGGCAAATTTTGGTAATGATGATAAGAATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTGCAGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360105" ref_strand="+" ref_description="SGN-E360105 [cLPP-14-E2]">
      <seq>aggattttcgctggtctttttcttatgtgcattgtgctcccttcgctggcctcagcgtttgtagatcatctacctgaagttggccaagtaaactataacaatgatgtaccgatccatgttagtactgttgctcacttcagcgaaaatcaagttaaggaggcattgataagaagggcaaaggcagtgcaagatctgtgggcaaattttggtaatgatgataagaatgatgtagctaaagaagatgctgcacctgtaactccaacgcctgttgattcaacacctacaactacacctgttgatccaacttcaacgcctgttgatccaacacctaatcctgggcctgttaaccctgttccagctgatccaacacctaatcctgtgcctgctaacaatgtacctgcaggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="92885" stop="91879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92585" g_stop="92179" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E360105" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92585" e_stop="92179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTTCGCTGGTCTTTTTCTTATTTGCATTGTCCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAAGCAAGTTAAGGAGGCAATGATAAGAAGGGCAAAGGCAGTGCATGATCTGTGGGCAAATTTTGGTAATAATGATAAGGATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTGCAGGATA</genome_strand>
        <mrna_strand>AGGATTTTCGCTGGTCTTTTTCTTATGTGCATTGTGCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACTATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAATCAAGTTAAGGAGGCATTGATAAGAAGGGCAAAGGCAGTGCAAGATCTGTGGGCAAATTTTGGTAATGATGATAAGAATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAACTTCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTGCAGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361883" ref_strand="+" ref_description="SGN-E361883 [cLPP-12-J24]">
      <seq>aaagatggcagggaaggcgaggattttcgctggtctttttcttatttgcattgtcctcccttcgctggcctcagcgtttgtagatcatctacctgaagttggccaagtaaacgataacaatgatgtaccgatccatgttagtactgttgctcacttcagcgaaaatcaagttaaggaggcattgataagaagggcaaaggcagtgcaagatctgtgggcaaattttggtaatgatgataagaatgatgtagctaaagaagatgctgcacctgtaactccaacgcctgttgattcaacacctacaactacacctgttgatccaactccaacgcctgttgatccaacacctaatcctgggcctgttaaccctgttccagctgatccaacacctaatcctgtgcctgctaacaatgtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="92904" stop="91886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92604" g_stop="92186" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E361883" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92604" e_stop="92186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGGTAGGGAAGGCGAGGATTTTCGCTGGTCTTTTTCTTATTTGCATTGTCCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAAGCAAGTTAAGGAGGCAATGATAAGAAGGGCAAAGGCAGTGCATGATCTGTGGGCAAATTTTGGTAATAATGATAAGGATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTG</genome_strand>
        <mrna_strand>AAAGATGGCAGGGAAGGCGAGGATTTTCGCTGGTCTTTTTCTTATTTGCATTGTCCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAATCAAGTTAAGGAGGCATTGATAAGAAGGGCAAAGGCAGTGCAAGATCTGTGGGCAAATTTTGGTAATGATGATAAGAATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363694" ref_strand="+" ref_description="SGN-E363694 [cLPP-3-N14]">
      <seq>ggcagggaaggcgaggattttcgctggtctttttcttatttgcattgtcctcccttcgctggcctcagcgtttgtagatcatctacctgaagttggccaagtaaacgataacaatgatgtaccgatccatgttagtactgttgctcacttcagcgaaaatcaagttaaggaggcattgataagaagggcaaaggcagtgcaagatctgtgggcaaattttggtaatgatgataagaatgatgtagctaaagaagatgctgcacctgtaactccaacgcctgttgattcaacacctacaactacacctgttgatccaactccaacgcctgttgatccaacacctaatcctgggcctgttaaccctgttccagctgatccaacacctaatcctgtgcctgctaacaatgtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="92898" stop="91886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92598" g_stop="92186" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E363694" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92598" e_stop="92186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGGGAAGGCGAGGATTTTCGCTGGTCTTTTTCTTATTTGCATTGTCCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAAGCAAGTTAAGGAGGCAATGATAAGAAGGGCAAAGGCAGTGCATGATCTGTGGGCAAATTTTGGTAATAATGATAAGGATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTG</genome_strand>
        <mrna_strand>GGCAGGGAAGGCGAGGATTTTCGCTGGTCTTTTTCTTATTTGCATTGTCCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAATCAAGTTAAGGAGGCATTGATAAGAAGGGCAAAGGCAGTGCAAGATCTGTGGGCAAATTTTGGTAATGATGATAAGAATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359809" ref_strand="+" ref_description="SGN-E359809 [cLPP-9-I17]">
      <seq>ttttcttatttgcattgtcctcccttcgctgaccttaacgtgagtagatcatctacctgaagttggccaagtaaacgataacaatgatgtaccgatccatgttagtactgttgctcacttcagcgaaaatcaagttaaggaggcattgataagaagggcaaaggcagtgcaagatctgcgggcaaattttggtaatgatgatgagaatgatgtagctaaagaagatgctgcacctggtacttcaacgcctgttgattcaacacctacaactacacctgttgatccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="92868" stop="91982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92568" g_stop="92282" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E359809" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92568" e_stop="92282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTATTTGCATTGTCCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAAGCAAGTTAAGGAGGCAATGATAAGAAGGGCAAAGGCAGTGCATGATCTGTGGGCAAATTTTGGTAATAATGATAAGGATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAA</genome_strand>
        <mrna_strand>TTTTCTTATTTGCATTGTCCTCCCTTCGCTGACCTTAACGTGAGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAATCAAGTTAAGGAGGCATTGATAAGAAGGGCAAAGGCAGTGCAAGATCTGCGGGCAAATTTTGGTAATGATGATGAGAATGATGTAGCTAAAGAAGATGCTGCACCTGGTACTTCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740177" ref_strand="+" ref_description="SGN-E740177 [LC20BF01]">
      <seq>caatattcactgcggagcttatatttgatcgtttttactctaccaccagtagatctacaccggaaagcttctctccgacagcttttccgatctgctatattgatcggaatccgtactacttcacatggcaggggcggcgtccgcgctgttcctccttgacatcaaaggccgggtcctcgtctggcgtgattaccgtggagacgtcacttcagttcaagcggaacgattcttcaccaagctcattgaaaaagagggcgatcctctggatcctgtagcatatgataatggcgtgacctatatgtttatacagcataacaatgtgtatctcatgactgcatcaaggcagaactgtaatgcagctagtctccttctgtttctacaccgtgtcgtagatgtattcaagcattattttgaagagctagaagaagaatcccttcgcgataattttgttgtggtgtatgagctacttgatgaaatgatggactttggttatcctcaatataccgaagcaaaaattcttagtgagttcataaaaactgatgcatataggatggaggttacacaaaggcctccaatggcagttacaaatgctgtgtcctggcgtagtgaagggataaattacaagaagaatgaagtgtttttggatgttgtggagagtgttaatatacttgtaaacagcaatgggcaaatagtgagatcagatgttgttggtgcactgaagatgagggcatacttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaanggcgaactaccaaggggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95075" stop="102494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95374" g_stop="95626" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95627" i_stop="96130" i_length="504">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="96271" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="394" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96272" i_stop="96644" i_length="373">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96645" g_stop="96707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="457" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96708" i_stop="96809" i_length="102">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96810" g_stop="96986" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="634" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96987" i_stop="97054" i_length="68">
            <donor d_prob="0.381" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97055" g_stop="97158" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="738" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="846" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102150" g_stop="102194" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="891" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E740177" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95374" e_stop="95626"/>
          <exon e_start="96131" e_stop="96271"/>
          <exon e_start="96645" e_stop="96707"/>
          <exon e_start="96810" e_stop="96986"/>
          <exon e_start="97055" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTCACTGCGGAGCTTATATTTGATCGTTTTTACTCTACCACCAGTAGATCTACACCGGAAAGCTTCTCTCCGACAGCTTTTCCGATCTGCTATATTGATCGGAATCCGTACTACTTCACATGGCAGGGGCGGCGTCCGCGCTGTTCCTCCTTGACATCAAAGGCCGGGTCCTCGTCTGGCGTGATTACCGTGGAGACGTCACTTCAGTTCAAGCGGAACGATTCTTCACCAAGCTCATTGAAAAAGAGGTTCTTTTTTCCTCTCTTTTGAATTTAATATGAGAAATTGAAACATTTATCACAAGTTGATGCGCTAATAAATGGTTCTAGTTTGAAATTGGAGTTAGATTTGAGTTTAGGAGAGTGGAGATTGGTGTAATTTGATGTGAAATGATGCCAATTTAGTTAAATAGAACGGAGAAAGAGTTATAATTTCTTTTGAAGATTTCACGTGTTTTGAATTTTGAAGTTTCAAATCTTAAGTAAATTTGTGCAAGCATAGGTTCAAGGACTTATATTCTATCAATAATAATGTTGTACCACTCTACTTAAAAAGAGCAAATCTCATTGAGAAGTCAAAGTTAAGATGATTAATATTAAAACAAAGTTACCTTTTCTCTGATATGTATGCCTTTTTATCATCTACATTTTTGTTTCTTTTCCAGGAAGTTGATTTGTTTTGATTTAGTAGGAGCTTGAGCAGTTCGCGGTTTGCTGTGTAATTTGATTGTTATGTGATTTTATCCATTGCAGGGCGATCCTCTGGATCCTGTAGCATATGATAATGGCGTGACCTATATGTTTATACAGCATAACAATGTGTATCTCATGACTGCATCAAGGCAGAACTGTAATGCAGCTAGTCTCCTTCTGTTTCTACACCGTGTCGTAGATGTAAGTTATGCTGATATTTGAGGATTTGTACTCTAACTATGTTAATCCAAAATCAATTACTCTCTCAGTTATGAGAATAATGGCAGATTTCGGAGTTTAGGGTCAATCTGTTCAACTTTCAATATCAATTTGGACATCAACTTCTCTAATTTTGAAGTAAAATTTACATATTATATGATTATAACTATATTAACTGAACTATGTATCTACGTCACAGTATTTTAAAAATAAATTTATTCTTGAAATGGAAGAACTTTTTTTGTTTGACTCCTCTAATAGTTATAGTACCGTAAAAATGTAATGGAGGGAGTAATGGTTTCTTGGTTGGAACTTGGGGAGATTTATCATTTTTTATATGTTACCTTTCTGACAGGTATTCAAGCATTATTTTGAAGAGCTAGAAGAAGAATCCCTTCGCGATAATTTTGTTGTGGTGGTATGAGGAATATTTCATGTCTCTTTAAGATCAAAAGTTAGATAGGAAATTGTCATTCATATTTTCTCATTCAGACTGAGCTGATGTTTGTTGTCTTTGCAGTATGAGCTACTTGATGAAATGATGGACTTTGGTTATCCTCAATATACCGAAGCAAAAATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAAGTAGGTATACATGTTTATTTAAGAAGATATTTTTCTTCATTGGGTTACATGGAAGTTTGTTCTTTCAGGTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATT</genome_strand>
        <mrna_strand>CAATATTCACTGCGGAGCTTATATTTGATCGTTTTTACTCTACCACCAGTAGATCTACACCGGAAAGCTTCTCTCCGACAGCTTTTCCGATCTGCTATATTGATCGGAATCCGTACTACTTCACATGGCAGGGGCGGCGTCCGCGCTGTTCCTCCTTGACATCAAAGGCCGGGTCCTCGTCTGGCGTGATTACCGTGGAGACGTCACTTCAGTTCAAGCGGAACGATTCTTCACCAAGCTCATTGAAAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGATCCTCTGGATCCTGTAGCATATGATAATGGCGTGACCTATATGTTTATACAGCATAACAATGTGTATCTCATGACTGCATCAAGGCAGAACTGTAATGCAGCTAGTCTCCTTCTGTTTCTACACCGTGTCGTAGAT.....................................................................................................................................................................................................................................................................................................................................................................................GTATTCAAGCATTATTTTGAAGAGCTAGAAGAAGAATCCCTTCGCGATAATTTTGTTGTGGTG......................................................................................................TATGAGCTACTTGATGAAATGATGGACTTTGGTTATCCTCAATATACCGAAGCAAAAATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAA....................................................................GTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAANGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737132" ref_strand="+" ref_description="SGN-E737132 [LC08CD08]">
      <seq>aagattcactgcggagcttatatttgatcgtttttactctaccaccagtagatctacaccggaaagcttctctccgacagcttttccgatctgctatattgatcggaatccgtactacttcacatggcaggggcggcgtccgcgctgttcctccttgacatcaaaggccgggtcctcgtctggcgtgattaccgtggagacgtcacttcagttcaagcggaacgattcttcaccaagctcattgaaaaagagggcgatcctctggatcctgtagcatatgataatggcgtgacctatatgtttatacagcataacaatgtgtatctcatgactgcatcaaggcagaactgtaatgcagctagtctccttctgtttctacaccgtgtcgtagatgtattcaagcattattttgaagagctagaagaagaatcccttcgcgataattttgttgtggtgtatgagctacttgatgaaatgatggactttggttatcctcaatataccgaagcaaaaattcttagtgagttcataaaaactgatgcatataggatggaggttacacaaaggcctccaatggcagttacaaatgctgtgtcctggcgtagtgaagggataaattacaagaagaatgaagtgtttttggatgttgtggagagtgttaatatacttgtaaacagcaatgggcaaatagtgagatcagatgttgttggtgcactgaagatgagggcatacttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaagggaaagccattgatcttgatgatatncagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95075" stop="102497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95375" g_stop="95626" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95627" i_stop="96130" i_length="504">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="96271" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="393" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96272" i_stop="96644" i_length="373">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96645" g_stop="96707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="456" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96708" i_stop="96809" i_length="102">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96810" g_stop="96986" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="633" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96987" i_stop="97054" i_length="68">
            <donor d_prob="0.381" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97055" g_stop="97158" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="737" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="845" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102150" g_stop="102197" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="893" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E737132" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95375" e_stop="95626"/>
          <exon e_start="96131" e_stop="96271"/>
          <exon e_start="96645" e_stop="96707"/>
          <exon e_start="96810" e_stop="96986"/>
          <exon e_start="97055" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTCACTGCGGAGCTTATATTTGATCGTTTTTACTCTACCACCAGTAGATCTACACCGGAAAGCTTCTCTCCGACAGCTTTTCCGATCTGCTATATTGATCGGAATCCGTACTACTTCACATGGCAGGGGCGGCGTCCGCGCTGTTCCTCCTTGACATCAAAGGCCGGGTCCTCGTCTGGCGTGATTACCGTGGAGACGTCACTTCAGTTCAAGCGGAACGATTCTTCACCAAGCTCATTGAAAAAGAGGTTCTTTTTTCCTCTCTTTTGAATTTAATATGAGAAATTGAAACATTTATCACAAGTTGATGCGCTAATAAATGGTTCTAGTTTGAAATTGGAGTTAGATTTGAGTTTAGGAGAGTGGAGATTGGTGTAATTTGATGTGAAATGATGCCAATTTAGTTAAATAGAACGGAGAAAGAGTTATAATTTCTTTTGAAGATTTCACGTGTTTTGAATTTTGAAGTTTCAAATCTTAAGTAAATTTGTGCAAGCATAGGTTCAAGGACTTATATTCTATCAATAATAATGTTGTACCACTCTACTTAAAAAGAGCAAATCTCATTGAGAAGTCAAAGTTAAGATGATTAATATTAAAACAAAGTTACCTTTTCTCTGATATGTATGCCTTTTTATCATCTACATTTTTGTTTCTTTTCCAGGAAGTTGATTTGTTTTGATTTAGTAGGAGCTTGAGCAGTTCGCGGTTTGCTGTGTAATTTGATTGTTATGTGATTTTATCCATTGCAGGGCGATCCTCTGGATCCTGTAGCATATGATAATGGCGTGACCTATATGTTTATACAGCATAACAATGTGTATCTCATGACTGCATCAAGGCAGAACTGTAATGCAGCTAGTCTCCTTCTGTTTCTACACCGTGTCGTAGATGTAAGTTATGCTGATATTTGAGGATTTGTACTCTAACTATGTTAATCCAAAATCAATTACTCTCTCAGTTATGAGAATAATGGCAGATTTCGGAGTTTAGGGTCAATCTGTTCAACTTTCAATATCAATTTGGACATCAACTTCTCTAATTTTGAAGTAAAATTTACATATTATATGATTATAACTATATTAACTGAACTATGTATCTACGTCACAGTATTTTAAAAATAAATTTATTCTTGAAATGGAAGAACTTTTTTTGTTTGACTCCTCTAATAGTTATAGTACCGTAAAAATGTAATGGAGGGAGTAATGGTTTCTTGGTTGGAACTTGGGGAGATTTATCATTTTTTATATGTTACCTTTCTGACAGGTATTCAAGCATTATTTTGAAGAGCTAGAAGAAGAATCCCTTCGCGATAATTTTGTTGTGGTGGTATGAGGAATATTTCATGTCTCTTTAAGATCAAAAGTTAGATAGGAAATTGTCATTCATATTTTCTCATTCAGACTGAGCTGATGTTTGTTGTCTTTGCAGTATGAGCTACTTGATGAAATGATGGACTTTGGTTATCCTCAATATACCGAAGCAAAAATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAAGTAGGTATACATGTTTATTTAAGAAGATATTTTTCTTCATTGGGTTACATGGAAGTTTGTTCTTTCAGGTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTAT</genome_strand>
        <mrna_strand>AAGATTCACTGCGGAGCTTATATTTGATCGTTTTTACTCTACCACCAGTAGATCTACACCGGAAAGCTTCTCTCCGACAGCTTTTCCGATCTGCTATATTGATCGGAATCCGTACTACTTCACATGGCAGGGGCGGCGTCCGCGCTGTTCCTCCTTGACATCAAAGGCCGGGTCCTCGTCTGGCGTGATTACCGTGGAGACGTCACTTCAGTTCAAGCGGAACGATTCTTCACCAAGCTCATTGAAAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGATCCTCTGGATCCTGTAGCATATGATAATGGCGTGACCTATATGTTTATACAGCATAACAATGTGTATCTCATGACTGCATCAAGGCAGAACTGTAATGCAGCTAGTCTCCTTCTGTTTCTACACCGTGTCGTAGAT.....................................................................................................................................................................................................................................................................................................................................................................................GTATTCAAGCATTATTTTGAAGAGCTAGAAGAAGAATCCCTTCGCGATAATTTTGTTGTGGTG......................................................................................................TATGAGCTACTTGATGAAATGATGGACTTTGGTTATCCTCAATATACCGAAGCAAAAATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAA....................................................................GTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAAGGGAAAGCCATTGATCTTGATGATATNCAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278637" ref_strand="+" ref_description="SGN-E278637 [cLER-10-P2]">
      <seq>atcgtttttactctaccaccagtagatctacaccggaaagcttctctccgacagcttttccgatctgctatattgatcggaatccgtactacttcacatggcaggggcggcgtccgcgctgttcctccttgacatcaaaggccgggtcctcgtctggcgtgattaccgtggagacgtcacttcagttcaagcggaacgattcttcaccaagctcattgaaaaagagggcgatcctctggatcctgtagcatatgataatggcgtgacctatatgtttatacagcataacaatgtgtatctcatgactgcatcaaggcagaactgtaatgcagctagtctccttctgtttctacaccgtgtcgtagatgtattcaagcattattttgaagagctagaagaagaatcccttcgcgataattttgttgtggtgtatgagctacttgatgaaatgatggactttggttatcctcaatataccgaagcaaaaattcttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95101" stop="97175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95401" g_stop="95626" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95627" i_stop="96130" i_length="504">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="96271" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="367" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96272" i_stop="96644" i_length="373">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96645" g_stop="96707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="430" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96708" i_stop="96809" i_length="102">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96810" g_stop="96875" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="496" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E278637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95401" e_stop="95626"/>
          <exon e_start="96131" e_stop="96271"/>
          <exon e_start="96645" e_stop="96707"/>
          <exon e_start="96810" e_stop="96875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTTTTTACTCTACCACCAGTAGATCTACACCGGAAAGCTTCTCTCCGACAGCTTTTCCGATCTGCTATATTGATCGGAATCCGTACTACTTCACATGGCAGGGGCGGCGTCCGCGCTGTTCCTCCTTGACATCAAAGGCCGGGTCCTCGTCTGGCGTGATTACCGTGGAGACGTCACTTCAGTTCAAGCGGAACGATTCTTCACCAAGCTCATTGAAAAAGAGGTTCTTTTTTCCTCTCTTTTGAATTTAATATGAGAAATTGAAACATTTATCACAAGTTGATGCGCTAATAAATGGTTCTAGTTTGAAATTGGAGTTAGATTTGAGTTTAGGAGAGTGGAGATTGGTGTAATTTGATGTGAAATGATGCCAATTTAGTTAAATAGAACGGAGAAAGAGTTATAATTTCTTTTGAAGATTTCACGTGTTTTGAATTTTGAAGTTTCAAATCTTAAGTAAATTTGTGCAAGCATAGGTTCAAGGACTTATATTCTATCAATAATAATGTTGTACCACTCTACTTAAAAAGAGCAAATCTCATTGAGAAGTCAAAGTTAAGATGATTAATATTAAAACAAAGTTACCTTTTCTCTGATATGTATGCCTTTTTATCATCTACATTTTTGTTTCTTTTCCAGGAAGTTGATTTGTTTTGATTTAGTAGGAGCTTGAGCAGTTCGCGGTTTGCTGTGTAATTTGATTGTTATGTGATTTTATCCATTGCAGGGCGATCCTCTGGATCCTGTAGCATATGATAATGGCGTGACCTATATGTTTATACAGCATAACAATGTGTATCTCATGACTGCATCAAGGCAGAACTGTAATGCAGCTAGTCTCCTTCTGTTTCTACACCGTGTCGTAGATGTAAGTTATGCTGATATTTGAGGATTTGTACTCTAACTATGTTAATCCAAAATCAATTACTCTCTCAGTTATGAGAATAATGGCAGATTTCGGAGTTTAGGGTCAATCTGTTCAACTTTCAATATCAATTTGGACATCAACTTCTCTAATTTTGAAGTAAAATTTACATATTATATGATTATAACTATATTAACTGAACTATGTATCTACGTCACAGTATTTTAAAAATAAATTTATTCTTGAAATGGAAGAACTTTTTTTGTTTGACTCCTCTAATAGTTATAGTACCGTAAAAATGTAATGGAGGGAGTAATGGTTTCTTGGTTGGAACTTGGGGAGATTTATCATTTTTTATATGTTACCTTTCTGACAGGTATTCAAGCATTATTTTGAAGAGCTAGAAGAAGAATCCCTTCGCGATAATTTTGTTGTGGTGGTATGAGGAATATTTCATGTCTCTTTAAGATCAAAAGTTAGATAGGAAATTGTCATTCATATTTTCTCATTCAGACTGAGCTGATGTTTGTTGTCTTTGCAGTATGAGCTACTTGATGAAATGATGGACTTTGGTTATCCTCAATATACCGAAGCAAAAATTCTTAGT</genome_strand>
        <mrna_strand>ATCGTTTTTACTCTACCACCAGTAGATCTACACCGGAAAGCTTCTCTCCGACAGCTTTTCCGATCTGCTATATTGATCGGAATCCGTACTACTTCACATGGCAGGGGCGGCGTCCGCGCTGTTCCTCCTTGACATCAAAGGCCGGGTCCTCGTCTGGCGTGATTACCGTGGAGACGTCACTTCAGTTCAAGCGGAACGATTCTTCACCAAGCTCATTGAAAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGATCCTCTGGATCCTGTAGCATATGATAATGGCGTGACCTATATGTTTATACAGCATAACAATGTGTATCTCATGACTGCATCAAGGCAGAACTGTAATGCAGCTAGTCTCCTTCTGTTTCTACACCGTGTCGTAGAT.....................................................................................................................................................................................................................................................................................................................................................................................GTATTCAAGCATTATTTTGAAGAGCTAGAAGAAGAATCCCTTCGCGATAATTTTGTTGTGGTG......................................................................................................TATGAGCTACTTGATGAAATGATGGACTTTGGTTATCCTCAATATACCGAAGCAAAAATTCTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304900" ref_strand="+" ref_description="SGN-E304900 [cLEX-10-I24]">
      <seq>accagtagatctacaccggaaagcttctctccgacagcttttccgatctgctatattgatcggaatccgtactacttcacatggcaggggcggcgtccgcgctgttcctccttgacatcaaaggccgggtcctcgtctggcgtgattaccgtggagacgtcacttcagttcaagcggaacgattcttcaccaagctcattgaaaaagagggcgatcctctggatcctgtagcatatgataatggcgtgacctatatgtttatacagcataacaatgtgtatctcatgactgcatcaaggcagaactgtaatgcagctagtctccttctgtttctacaccgtgtcgtagatgtattcaagcattattttgaagagctagaagaagaatcccttcgcgataattttgttgtggtgtatgagctacttgatgaaatgatggactttggttatcctcaatataccgaagcaaaaattcttagtgagttcataaaaactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95118" stop="97194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95418" g_stop="95626" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95627" i_stop="96130" i_length="504">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="96271" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="350" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96272" i_stop="96644" i_length="373">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96645" g_stop="96707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="413" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96708" i_stop="96809" i_length="102">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96810" g_stop="96894" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="498" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E304900" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95418" e_stop="95626"/>
          <exon e_start="96131" e_stop="96271"/>
          <exon e_start="96645" e_stop="96707"/>
          <exon e_start="96810" e_stop="96894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGTAGATCTACACCGGAAAGCTTCTCTCCGACAGCTTTTCCGATCTGCTATATTGATCGGAATCCGTACTACTTCACATGGCAGGGGCGGCGTCCGCGCTGTTCCTCCTTGACATCAAAGGCCGGGTCCTCGTCTGGCGTGATTACCGTGGAGACGTCACTTCAGTTCAAGCGGAACGATTCTTCACCAAGCTCATTGAAAAAGAGGTTCTTTTTTCCTCTCTTTTGAATTTAATATGAGAAATTGAAACATTTATCACAAGTTGATGCGCTAATAAATGGTTCTAGTTTGAAATTGGAGTTAGATTTGAGTTTAGGAGAGTGGAGATTGGTGTAATTTGATGTGAAATGATGCCAATTTAGTTAAATAGAACGGAGAAAGAGTTATAATTTCTTTTGAAGATTTCACGTGTTTTGAATTTTGAAGTTTCAAATCTTAAGTAAATTTGTGCAAGCATAGGTTCAAGGACTTATATTCTATCAATAATAATGTTGTACCACTCTACTTAAAAAGAGCAAATCTCATTGAGAAGTCAAAGTTAAGATGATTAATATTAAAACAAAGTTACCTTTTCTCTGATATGTATGCCTTTTTATCATCTACATTTTTGTTTCTTTTCCAGGAAGTTGATTTGTTTTGATTTAGTAGGAGCTTGAGCAGTTCGCGGTTTGCTGTGTAATTTGATTGTTATGTGATTTTATCCATTGCAGGGCGATCCTCTGGATCCTGTAGCATATGATAATGGCGTGACCTATATGTTTATACAGCATAACAATGTGTATCTCATGACTGCATCAAGGCAGAACTGTAATGCAGCTAGTCTCCTTCTGTTTCTACACCGTGTCGTAGATGTAAGTTATGCTGATATTTGAGGATTTGTACTCTAACTATGTTAATCCAAAATCAATTACTCTCTCAGTTATGAGAATAATGGCAGATTTCGGAGTTTAGGGTCAATCTGTTCAACTTTCAATATCAATTTGGACATCAACTTCTCTAATTTTGAAGTAAAATTTACATATTATATGATTATAACTATATTAACTGAACTATGTATCTACGTCACAGTATTTTAAAAATAAATTTATTCTTGAAATGGAAGAACTTTTTTTGTTTGACTCCTCTAATAGTTATAGTACCGTAAAAATGTAATGGAGGGAGTAATGGTTTCTTGGTTGGAACTTGGGGAGATTTATCATTTTTTATATGTTACCTTTCTGACAGGTATTCAAGCATTATTTTGAAGAGCTAGAAGAAGAATCCCTTCGCGATAATTTTGTTGTGGTGGTATGAGGAATATTTCATGTCTCTTTAAGATCAAAAGTTAGATAGGAAATTGTCATTCATATTTTCTCATTCAGACTGAGCTGATGTTTGTTGTCTTTGCAGTATGAGCTACTTGATGAAATGATGGACTTTGGTTATCCTCAATATACCGAAGCAAAAATTCTTAGTGAGTTCATAAAAACTGATG</genome_strand>
        <mrna_strand>ACCAGTAGATCTACACCGGAAAGCTTCTCTCCGACAGCTTTTCCGATCTGCTATATTGATCGGAATCCGTACTACTTCACATGGCAGGGGCGGCGTCCGCGCTGTTCCTCCTTGACATCAAAGGCCGGGTCCTCGTCTGGCGTGATTACCGTGGAGACGTCACTTCAGTTCAAGCGGAACGATTCTTCACCAAGCTCATTGAAAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGATCCTCTGGATCCTGTAGCATATGATAATGGCGTGACCTATATGTTTATACAGCATAACAATGTGTATCTCATGACTGCATCAAGGCAGAACTGTAATGCAGCTAGTCTCCTTCTGTTTCTACACCGTGTCGTAGAT.....................................................................................................................................................................................................................................................................................................................................................................................GTATTCAAGCATTATTTTGAAGAGCTAGAAGAAGAATCCCTTCGCGATAATTTTGTTGTGGTG......................................................................................................TATGAGCTACTTGATGAAATGATGGACTTTGGTTATCCTCAATATACCGAAGCAAAAATTCTTAGTGAGTTCATAAAAACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295305" ref_strand="+" ref_description="SGN-E295305 [cLET-20-D2]">
      <seq>ctacaccggaaagcttctctccgacagcttttccgatctgctatattgatcggaatccgtactacttcacatggcaggggcggcgtccgcgctgttcctccttgacatcaaaggccgggtcctcgtctggcgtgattaccgtggagacgtcacttcagttcaagcggaacgattcttcaccaagctcattgaaaaagagggcgatcctctggatcctgtagcatatgataatggcgtgacctatatgtttatacagcataacaatgtgtatctcatgactgcatcaaggcagaactgtaatgcagctagtctccttctgtttctacaccgtgtcgtagatgtattcaagcattattttgaagagctagaagaagaatcccttcgcgataattttgttgtggtgtatgagctacttgatgaaatgatggactttggttatcctcaatataccgaagcaaaaattcttagtgagttcataaaaactgatgcatataggatggaggttacacaaaggcctccaatggcagttacaaatgctgtgtcctggcgtagtgaagggataaattacaagaagaatgaagtgtttttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95128" stop="97294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95428" g_stop="95626" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95627" i_stop="96130" i_length="504">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="96271" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="340" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96272" i_stop="96644" i_length="373">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96645" g_stop="96707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="403" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96708" i_stop="96809" i_length="102">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96810" g_stop="96986" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="580" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96987" i_stop="97054" i_length="68">
            <donor d_prob="0.381" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97055" g_stop="97067" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="593" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E295305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95428" e_stop="95626"/>
          <exon e_start="96131" e_stop="96271"/>
          <exon e_start="96645" e_stop="96707"/>
          <exon e_start="96810" e_stop="96986"/>
          <exon e_start="97055" e_stop="97067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACCGGAAAGCTTCTCTCCGACAGCTTTTCCGATCTGCTATATTGATCGGAATCCGTACTACTTCACATGGCAGGGGCGGCGTCCGCGCTGTTCCTCCTTGACATCAAAGGCCGGGTCCTCGTCTGGCGTGATTACCGTGGAGACGTCACTTCAGTTCAAGCGGAACGATTCTTCACCAAGCTCATTGAAAAAGAGGTTCTTTTTTCCTCTCTTTTGAATTTAATATGAGAAATTGAAACATTTATCACAAGTTGATGCGCTAATAAATGGTTCTAGTTTGAAATTGGAGTTAGATTTGAGTTTAGGAGAGTGGAGATTGGTGTAATTTGATGTGAAATGATGCCAATTTAGTTAAATAGAACGGAGAAAGAGTTATAATTTCTTTTGAAGATTTCACGTGTTTTGAATTTTGAAGTTTCAAATCTTAAGTAAATTTGTGCAAGCATAGGTTCAAGGACTTATATTCTATCAATAATAATGTTGTACCACTCTACTTAAAAAGAGCAAATCTCATTGAGAAGTCAAAGTTAAGATGATTAATATTAAAACAAAGTTACCTTTTCTCTGATATGTATGCCTTTTTATCATCTACATTTTTGTTTCTTTTCCAGGAAGTTGATTTGTTTTGATTTAGTAGGAGCTTGAGCAGTTCGCGGTTTGCTGTGTAATTTGATTGTTATGTGATTTTATCCATTGCAGGGCGATCCTCTGGATCCTGTAGCATATGATAATGGCGTGACCTATATGTTTATACAGCATAACAATGTGTATCTCATGACTGCATCAAGGCAGAACTGTAATGCAGCTAGTCTCCTTCTGTTTCTACACCGTGTCGTAGATGTAAGTTATGCTGATATTTGAGGATTTGTACTCTAACTATGTTAATCCAAAATCAATTACTCTCTCAGTTATGAGAATAATGGCAGATTTCGGAGTTTAGGGTCAATCTGTTCAACTTTCAATATCAATTTGGACATCAACTTCTCTAATTTTGAAGTAAAATTTACATATTATATGATTATAACTATATTAACTGAACTATGTATCTACGTCACAGTATTTTAAAAATAAATTTATTCTTGAAATGGAAGAACTTTTTTTGTTTGACTCCTCTAATAGTTATAGTACCGTAAAAATGTAATGGAGGGAGTAATGGTTTCTTGGTTGGAACTTGGGGAGATTTATCATTTTTTATATGTTACCTTTCTGACAGGTATTCAAGCATTATTTTGAAGAGCTAGAAGAAGAATCCCTTCGCGATAATTTTGTTGTGGTGGTATGAGGAATATTTCATGTCTCTTTAAGATCAAAAGTTAGATAGGAAATTGTCATTCATATTTTCTCATTCAGACTGAGCTGATGTTTGTTGTCTTTGCAGTATGAGCTACTTGATGAAATGATGGACTTTGGTTATCCTCAATATACCGAAGCAAAAATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAAGTAGGTATACATGTTTATTTAAGAAGATATTTTTCTTCATTGGGTTACATGGAAGTTTGTTCTTTCAGGTGTTTTTGGATG</genome_strand>
        <mrna_strand>CTACACCGGAAAGCTTCTCTCCGACAGCTTTTCCGATCTGCTATATTGATCGGAATCCGTACTACTTCACATGGCAGGGGCGGCGTCCGCGCTGTTCCTCCTTGACATCAAAGGCCGGGTCCTCGTCTGGCGTGATTACCGTGGAGACGTCACTTCAGTTCAAGCGGAACGATTCTTCACCAAGCTCATTGAAAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGATCCTCTGGATCCTGTAGCATATGATAATGGCGTGACCTATATGTTTATACAGCATAACAATGTGTATCTCATGACTGCATCAAGGCAGAACTGTAATGCAGCTAGTCTCCTTCTGTTTCTACACCGTGTCGTAGAT.....................................................................................................................................................................................................................................................................................................................................................................................GTATTCAAGCATTATTTTGAAGAGCTAGAAGAAGAATCCCTTCGCGATAATTTTGTTGTGGTG......................................................................................................TATGAGCTACTTGATGAAATGATGGACTTTGGTTATCCTCAATATACCGAAGCAAAAATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAA....................................................................GTGTTTTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341099" ref_strand="+" ref_description="SGN-E341099 [cTOE-22-K12]">
      <seq>cgattcttcaccaagctcatttaaaaagagggcgatcctctggatcctgtagcatatgataatggcgtgacctatatgtttatacagcataacaatgtgtatctcatgactgcatcaaggcagaactgtaatgcagctagtctccttctgtttctacaccgtgtcgtagatgtattcaagcattattttgaagagctagaagaagaatcccttcgcgataattttgttgtggtgtatgagctacttgatgaaatgatggactttggttatcctcaatataccgaagcaaaaattcttagtgagttcataaaaactgatgcatataggatggaggttacacaaaggcctccaatggcagttacaaatgctgtgtcctggcgtagtgaagggataaattacaagaagaatgaagtgtttttggatgttgtggagagtgttaatatacttgtaaacagcaatgggcaaatagtgagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95297" stop="97419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95597" g_stop="95626" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95627" i_stop="96130" i_length="504">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="96271" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="171" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96272" i_stop="96644" i_length="373">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96645" g_stop="96707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="234" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96708" i_stop="96809" i_length="102">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96810" g_stop="96986" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="411" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96987" i_stop="97054" i_length="68">
            <donor d_prob="0.381" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97055" g_stop="97119" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="476" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E341099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95597" e_stop="95626"/>
          <exon e_start="96131" e_stop="96271"/>
          <exon e_start="96645" e_stop="96707"/>
          <exon e_start="96810" e_stop="96986"/>
          <exon e_start="97055" e_stop="97119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTCTTCACCAAGCTCATTGAAAAAGAGGTTCTTTTTTCCTCTCTTTTGAATTTAATATGAGAAATTGAAACATTTATCACAAGTTGATGCGCTAATAAATGGTTCTAGTTTGAAATTGGAGTTAGATTTGAGTTTAGGAGAGTGGAGATTGGTGTAATTTGATGTGAAATGATGCCAATTTAGTTAAATAGAACGGAGAAAGAGTTATAATTTCTTTTGAAGATTTCACGTGTTTTGAATTTTGAAGTTTCAAATCTTAAGTAAATTTGTGCAAGCATAGGTTCAAGGACTTATATTCTATCAATAATAATGTTGTACCACTCTACTTAAAAAGAGCAAATCTCATTGAGAAGTCAAAGTTAAGATGATTAATATTAAAACAAAGTTACCTTTTCTCTGATATGTATGCCTTTTTATCATCTACATTTTTGTTTCTTTTCCAGGAAGTTGATTTGTTTTGATTTAGTAGGAGCTTGAGCAGTTCGCGGTTTGCTGTGTAATTTGATTGTTATGTGATTTTATCCATTGCAGGGCGATCCTCTGGATCCTGTAGCATATGATAATGGCGTGACCTATATGTTTATACAGCATAACAATGTGTATCTCATGACTGCATCAAGGCAGAACTGTAATGCAGCTAGTCTCCTTCTGTTTCTACACCGTGTCGTAGATGTAAGTTATGCTGATATTTGAGGATTTGTACTCTAACTATGTTAATCCAAAATCAATTACTCTCTCAGTTATGAGAATAATGGCAGATTTCGGAGTTTAGGGTCAATCTGTTCAACTTTCAATATCAATTTGGACATCAACTTCTCTAATTTTGAAGTAAAATTTACATATTATATGATTATAACTATATTAACTGAACTATGTATCTACGTCACAGTATTTTAAAAATAAATTTATTCTTGAAATGGAAGAACTTTTTTTGTTTGACTCCTCTAATAGTTATAGTACCGTAAAAATGTAATGGAGGGAGTAATGGTTTCTTGGTTGGAACTTGGGGAGATTTATCATTTTTTATATGTTACCTTTCTGACAGGTATTCAAGCATTATTTTGAAGAGCTAGAAGAAGAATCCCTTCGCGATAATTTTGTTGTGGTGGTATGAGGAATATTTCATGTCTCTTTAAGATCAAAAGTTAGATAGGAAATTGTCATTCATATTTTCTCATTCAGACTGAGCTGATGTTTGTTGTCTTTGCAGTATGAGCTACTTGATGAAATGATGGACTTTGGTTATCCTCAATATACCGAAGCAAAAATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAAGTAGGTATACATGTTTATTTAAGAAGATATTTTTCTTCATTGGGTTACATGGAAGTTTGTTCTTTCAGGTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATC</genome_strand>
        <mrna_strand>CGATTCTTCACCAAGCTCATTTAAAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGATCCTCTGGATCCTGTAGCATATGATAATGGCGTGACCTATATGTTTATACAGCATAACAATGTGTATCTCATGACTGCATCAAGGCAGAACTGTAATGCAGCTAGTCTCCTTCTGTTTCTACACCGTGTCGTAGAT.....................................................................................................................................................................................................................................................................................................................................................................................GTATTCAAGCATTATTTTGAAGAGCTAGAAGAAGAATCCCTTCGCGATAATTTTGTTGTGGTG......................................................................................................TATGAGCTACTTGATGAAATGATGGACTTTGGTTATCCTCAATATACCGAAGCAAAAATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAA....................................................................GTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233032" ref_strand="+" ref_description="SGN-E233032 [cLED-6-C5]">
      <seq>attcttagtgagttcataaaaactgatgcatataggatggaggttacacaaaggcctccaatggcagttacaaatgctgtgtcctggcgtagtgaagggataaattacaagaagaatgaagtgtttttggatgttgtggagagtgttaatatacttgtaaacagcaatgggcaaatagtgagatcagatgttgttggtgcactgaagatgagggcatacttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaggggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttataccgccagatggagcctttgatcttatgacctacagacttggtactcaggtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaggagccgtatggaaattgtggttaaagcacggagccagttcaaggaacgaagtactgcaactaatgttgaaattgagttacctgtggcaacggatgctacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96567" stop="102926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96867" g_stop="96986" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96987" i_stop="97054" i_length="68">
            <donor d_prob="0.381" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97055" g_stop="97158" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="224" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="332" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102150" g_stop="102246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="429" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="527" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102576" g_stop="102626" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="578" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E233032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96867" e_stop="96986"/>
          <exon e_start="97055" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAAGTAGGTATACATGTTTATTTAAGAAGATATTTTTCTTCATTGGGTTACATGGAAGTTTGTTCTTTCAGGTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAA</genome_strand>
        <mrna_strand>ATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAA....................................................................GTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG.......................................................................................................................................TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255046" ref_strand="+" ref_description="SGN-E255046 [cLEG-31-O1]">
      <seq>tcccccgggctgcaggaaatagtgagatcagatgttgttgttgcactgaagatgagggcatacttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaggggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttataccgccagatggagcctttgatcttatgacctacagacttggtactcaggtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaggagccgtatggaaattgtggttaaagcacggagccagttcaaggaacgaagtactgcaactaatgttgaaattgagttacctgtggcaacggatgctacaaatccaaatgtccgaacatcaatgggatcatctacttatgcacctgaaaaagatgcactgatttggaaaataaaatctttcccaggtggtaaggaatatatgttgagagcggagtttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96804" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96921" g_stop="96929" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.444"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96930" i_stop="97098" i_length="169">
            <donor d_prob="0.602" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97099" g_stop="97158" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="68" r_length="59" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="176" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102150" g_stop="102246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="273" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="371" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102576" g_stop="102717" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="513" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102718" i_stop="102821" i_length="104">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102822" g_stop="102848" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="540" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E255046" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96921" e_stop="96929"/>
          <exon e_start="97099" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102717"/>
          <exon e_start="102822" e_stop="102848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAAGTAGGTATACATGTTTATTTAAGAAGATATTTTTCTTCATTGGGTTACATGGAAGTTTGTTCTTTCAGGTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAGGTTAGTGTTGACTTGATCATAGTTGAAGTTTTAACTCATTGTTTAACTTTTCTGATTGTTCTCTTGTTGACATTTGCCTATATGTAATGCCATTTCTTTTTCAGGAATATATGTTGAGAGCGGAGTTTACT</genome_strand>
        <mrna_strand>TCCCCCGGG.........................................................................................................................................................................CTGCAGG-AAATAGTGAGATCAGATGTTGTTGTTGCACTGAAGATGAGGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG.......................................................................................................................................TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAG........................................................................................................GAATATATGTTGAGAGCGGAGTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251810" ref_strand="+" ref_description="SGN-E251810 [cLEG-14-G11]">
      <seq>ttacaagaagaatgaagtgtttttggatgttgtggagagtgttaatatacttgtaaacagcaatgggcaaatagtgagatcagatgttgttggtgcactgaagatgagggcatacttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaggggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttataccgccagatggagcctttgatcttatgacctacagacttggtactcaggtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaggagccgtatggaaattgtggttaaagcacggagccagttcaaggaacgaagtactgcaactaatgttgaaattgagttacctgtggcaacggatgctacaaatccaaatgtccgaacatcaatgggatcatctacttatgcacctgaaaaagatgcactgatttggaaaataaaatctttcccaggtggtaaggaatatatgttgagagcggagtttactcttcccagtattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96671" stop="103163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96971" g_stop="96986" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96987" i_stop="97054" i_length="68">
            <donor d_prob="0.381" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97055" g_stop="97158" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="120" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="228" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102150" g_stop="102246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="325" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="423" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102576" g_stop="102717" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="565" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102718" i_stop="102821" i_length="104">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102822" g_stop="102863" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="607" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E251810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96971" e_stop="96986"/>
          <exon e_start="97055" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102717"/>
          <exon e_start="102822" e_stop="102863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGAAGAATGAAGTAGGTATACATGTTTATTTAAGAAGATATTTTTCTTCATTGGGTTACATGGAAGTTTGTTCTTTCAGGTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAGGTTAGTGTTGACTTGATCATAGTTGAAGTTTTAACTCATTGTTTAACTTTTCTGATTGTTCTCTTGTTGACATTTGCCTATATGTAATGCCATTTCTTTTTCAGGAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTACA</genome_strand>
        <mrna_strand>TTACAAGAAGAATGAA....................................................................GTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG.......................................................................................................................................TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAG........................................................................................................GAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243402" ref_strand="+" ref_description="SGN-E243402 [cLED-34-G21]">
      <seq>ttggatgttgtggagagtgttaatatacttgtaaacagcaatgggcaaatagtgagatcagatgttgttggtgcactgaagatgagggcatacttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaggggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttataccgccagatggagcctttgatcttatgacctacagacttggtactcaggtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaggagccgtatggaaattgtggttaaagcacggagccagttcaaggaacgaagtactgcaactaatgttgaaattgagttacctgtggcaacggatgctacaaatccaaatgtccgaacatcaatgggatcatctacttatgcacctgaaaaagatgcactgatttggaaaataaaatctttcccaggtggtaaggaatatatgttgagagcggagtttactcttcccagtattacagcagaagaatcagttcctgagagaaaagctcctatacgtgtgaaatttgaaattccttattttactgtttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96761" stop="103236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97061" g_stop="97158" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="206" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102150" g_stop="102246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="303" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="401" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102576" g_stop="102717" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="543" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102718" i_stop="102821" i_length="104">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102822" g_stop="102936" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="658" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E243402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97061" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102717"/>
          <exon e_start="102822" e_stop="102936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAGGTTAGTGTTGACTTGATCATAGTTGAAGTTTTAACTCATTGTTTAACTTTTCTGATTGTTCTCTTGTTGACATTTGCCTATATGTAATGCCATTTCTTTTTCAGGAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTACAGCAGAAGAATCAGTTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAAATTCCTTATTTTACTGTTTCTG</genome_strand>
        <mrna_strand>TTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG.......................................................................................................................................TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAG........................................................................................................GAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTACAGCAGAAGAATCAGTTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAAATTCCTTATTTTACTGTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242914" ref_strand="+" ref_description="SGN-E242914 [cLED-31-K18]">
      <seq>ttggatgttgtggagagtgttaatatacttgtaaacagcaatgggcaaatagtgagatcagatgttgttggtgcactgaagatgagggcatacttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaggggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttataccgccagatggagcctttgatcttatgacctacagacttggtactcaggtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaggagccgtatggaaattgtggttaaagcacggagccagttcaaggaacgaagtactgcaactaatgttgaaattgagttacctgtggcaacggatgctacaaatccaaatgtccgaacatcaatgggatcatctacttatgcacctgaaaaagatgcactgatttggaaaataaaatctttcccaggtggtaaggaatatatgttgagagcggagtttactctttccagtatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96761" stop="103161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97061" g_stop="97158" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="206" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102150" g_stop="102246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="303" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="401" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102576" g_stop="102717" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="543" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102718" i_stop="102821" i_length="104">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102822" g_stop="102861" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="583" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E242914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97061" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102717"/>
          <exon e_start="102822" e_stop="102861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAGGTTAGTGTTGACTTGATCATAGTTGAAGTTTTAACTCATTGTTTAACTTTTCTGATTGTTCTCTTGTTGACATTTGCCTATATGTAATGCCATTTCTTTTTCAGGAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTA</genome_strand>
        <mrna_strand>TTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG.......................................................................................................................................TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAG........................................................................................................GAATATATGTTGAGAGCGGAGTTTACTCTTTCCAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260977" ref_strand="+" ref_description="SGN-E260977 [cLEG-55-L18]">
      <seq>tagtgagatcagatgttgttggtgcactgaagatgagggcatacttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaggggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttataccgccagatggagcctttgatcttatgacctacagacttggtactcaggtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaggagccgtatggaaattgtggttaaagcacggagccagttcaaggaacgaagtactgcaactaatgttgaaattgagttacctgtggcaacggatgctacaaatccaaatgtccgaacatcaatgggatcatctacttatgcacctgaaaaagatgcactgatttggaaaataaaatctttcccaggtggtaaggaatatatgttgagagcggagtttactcttcccagtattacagcagaagaatcagttcctgagagaaaagctcctatacgtgtgaaatttgaaattccttattttactgtttctggtatacaggttcgctacttgaagattattgagaaaagtggctatcaggctcttccatgggtgagatatattactatggctggtgaatacgagtttagactagtataaggtcaaagcacagatgatgtttctagccaatttgagttgtagaaggcctcagttaactcccaagntctagaattttgagctgcttggcaaaaggcactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96810" stop="105158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97110" g_stop="97158" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="157" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102150" g_stop="102246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="254" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="352" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102576" g_stop="102717" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="494" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102718" i_stop="102821" i_length="104">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102822" g_stop="102944" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="617" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102945" i_stop="104657" i_length="1713">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104658" g_stop="104858" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="817" r_length="200" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E260977" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97110" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102717"/>
          <exon e_start="102822" e_stop="102944"/>
          <exon e_start="104658" e_stop="104858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAGGTTAGTGTTGACTTGATCATAGTTGAAGTTTTAACTCATTGTTTAACTTTTCTGATTGTTCTCTTGTTGACATTTGCCTATATGTAATGCCATTTCTTTTTCAGGAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTACAGCAGAAGAATCAGTTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAAATTCCTTATTTTACTGTTTCTGGTATACAGGTAAGCCCTCGACTCTTTTTCCTATTCTAAGATCAGCAATTTATCCATAGAAATATATTTGTTCAAGAAGGGTTCCAAAAGATGTTGATTGTAAATGTAAAGACCACACTCCACAGTTGTGGCTCTCAGAAAGAGTATTACAAAGGCATAGTCGTACTAACCCCTAAAAGCATTGGTTTTACTTAGTCGTAGACTTCCAAGTCTGCATTCCCTTATTTCTGTAATCTTTAGGCCCATGTTGATATCCTTGCTTGGTCTATCATATTAAGAAACCACCGAGTCTCGGATGAGCTGTTAATTCTATGTACTTGATTAGTTCTCAGGCTGGGATGGCAGGAGGGGAGTCAGATGGGATTAGGAATTAGGACTTACAGTGAGTGTTGGCACTTCAAATGGTATTGGGAATTTAGGGTTATTGTAGTGCAAAGGCATATTGGGGATAATGAGGTGATGTGGCTGGTTCGATTCTGCTGTAGACGCACATTGTAAAAATCTTAGAATTGGCACAACAGAACACAAAATGTCCATTTAGTTGAACTCCTTTTTAAATTATTTTCCTTGCTAGTGGTTATTGTTGGTATTGCTTGACACTGCAATATGAAAAGAGAGGCAGGGCGGGGGTTCTGTGCTGGAAGAGGGCAATGTATAGCTGATTGTCATCTTTATGCCCAACAACTGCATATACTAAAGTCTAATTAACCATGGTCAACATTATCTGATTTCCTGGTAAGGTGTAGGCTGTAATACTACAATTAACCAGCCGAATAAACTTCAAATTATTTAAAGGTGGAGATGAGCTTATAAGACACCAACTATACTGACTAGTAAGTGGATTCCAATTAGGCACTCAGAGTTCCCCACATGCCTTCCCAAAGAACACGAAGTAACAATCTGCAGTAGTCAAACTTTTCCTCAGATCTAATCTGGCTCTGCTGTGTAGATCAAGCTGTCACCTATAGTATATCTTGCCTTCTATGACTTTTCTCCTTTGTTCAGTGCTGGAAGTTTATTTATATATATATATATAGAGAGAGAGAGAGAGATGGTAACAAACTTATATTTCAAAAGAGGCTGTGGAGCCATAATTATAATGAGTGTGAGCAAAACCTAAATTAGACAAAAACTATGTTAAACAGACTCTAAAACTTGGATTAGAGTCTCAGTGTCACATATGTACTCCTGTTTACACCAAAACCAAAAAAAGCAAAATACTTCTGTACTGGGTTGCTCTTTCCATCAAAACATCTTAGATTCCTTCCTCTTTAGATTTGTCCACCATATGCAGCCTGAGATCATACTCCATCTATTTTTTTAAAAAATAAATCTTTAGTGCCTCCCTTTCTGTTCTAGCTGGAAATCATCAGTGTAATCATTGGCACTGACCAATTCAAACCAATCATAGCAAAAAGTACGTCCCAGAGTTCTTTGTCACTCTACAGAACAAAAAAAGGTGACTCTTTGTTTCTGCATACTTACCACATAAGTGGCACTGGAGCAAAGTTGTATTCCCCTCCTCTGCAGCCTGTCCCGAGTCGAACAAGCTTGCTTGATTACCAGCCAAATAAAACAAGCCACCTAGTATGGGATTTGTTCCCCGTGCTTCAAAGGCCCATAACAAAACAAGCATATTTTTGTTTTAATCTGTTCTCTAAGCTGAATAGCTGATATAGCATGTTCTTGACATTGCAATAATATGTATTTAATGAATGTCAGGTTCGCTACTTGAAGATTATTGAGAAAAGTGGCTATCAGGCTCTTCCATGGGTGAGATATATTACTATGGCTGGTGAATACGAGTTAAGACTAGTATAAGGTCAAAGCACAGATGATGTTTCTAGCCAATTGAGTTTGTAGAAGGCCTCAGTTAACTCCCAAGTTCTAGAATTTTGAGCTGCTTGGCAAAAGGCAACTGCT</genome_strand>
        <mrna_strand>TAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG.......................................................................................................................................TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAG........................................................................................................GAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTACAGCAGAAGAATCAGTTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAAATTCCTTATTTTACTGTTTCTGGTATACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGCTACTTGAAGATTATTGAGAAAAGTGGCTATCAGGCTCTTCCATGGGTGAGATATATTACTATGGCTGGTGAATACGAGTTTAGACTAGTATAAGGTCAAAGCACAGATGATGTTTCTAGCCAATTTGAGTTGTAGAAGGCCTCAGTTAACTCCCAAGNTCTAGAATTTTGAGCTGCTTGGCAAAAGGC-ACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263792" ref_strand="+" ref_description="SGN-E263792 [cLEG-60-J18]">
      <seq>tagtgagatcagatgttgttggtgcactgaagatgagggcatacttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaggggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttataccgccagatggagcctttgatcttatgacctacagacttggtactcaggtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaggagccgtatggaaattgtggttaaagcacggagccagttcaaggaacgaagtactgcaactaatgttgaaattgagttacctgtggcaacggatgctacaaatccaaatgtccgaacatcaatgggatcatctacttatgcacctgaaaaagatgcactgatttggaaaataaaatctttcccaggtggtaaggaatatatgttgagagcggagtttactcttcccagtattacagcagaagaatcagttcctgagagaaaagctcctatacgtgtgaaatttgaaattccttattttactgtttctggtatacaggttcgctacttgaagattattgagaaaagtggctatcaggctcttccatgggtgagatatattactatggctggtgaatacgagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96810" stop="105044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97110" g_stop="97158" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="157" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102150" g_stop="102246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="254" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="352" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102576" g_stop="102717" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="494" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102718" i_stop="102821" i_length="104">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102822" g_stop="102944" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="617" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102945" i_stop="104657" i_length="1713">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104658" g_stop="104744" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="704" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E263792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97110" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102717"/>
          <exon e_start="102822" e_stop="102944"/>
          <exon e_start="104658" e_stop="104744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAGGTTAGTGTTGACTTGATCATAGTTGAAGTTTTAACTCATTGTTTAACTTTTCTGATTGTTCTCTTGTTGACATTTGCCTATATGTAATGCCATTTCTTTTTCAGGAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTACAGCAGAAGAATCAGTTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAAATTCCTTATTTTACTGTTTCTGGTATACAGGTAAGCCCTCGACTCTTTTTCCTATTCTAAGATCAGCAATTTATCCATAGAAATATATTTGTTCAAGAAGGGTTCCAAAAGATGTTGATTGTAAATGTAAAGACCACACTCCACAGTTGTGGCTCTCAGAAAGAGTATTACAAAGGCATAGTCGTACTAACCCCTAAAAGCATTGGTTTTACTTAGTCGTAGACTTCCAAGTCTGCATTCCCTTATTTCTGTAATCTTTAGGCCCATGTTGATATCCTTGCTTGGTCTATCATATTAAGAAACCACCGAGTCTCGGATGAGCTGTTAATTCTATGTACTTGATTAGTTCTCAGGCTGGGATGGCAGGAGGGGAGTCAGATGGGATTAGGAATTAGGACTTACAGTGAGTGTTGGCACTTCAAATGGTATTGGGAATTTAGGGTTATTGTAGTGCAAAGGCATATTGGGGATAATGAGGTGATGTGGCTGGTTCGATTCTGCTGTAGACGCACATTGTAAAAATCTTAGAATTGGCACAACAGAACACAAAATGTCCATTTAGTTGAACTCCTTTTTAAATTATTTTCCTTGCTAGTGGTTATTGTTGGTATTGCTTGACACTGCAATATGAAAAGAGAGGCAGGGCGGGGGTTCTGTGCTGGAAGAGGGCAATGTATAGCTGATTGTCATCTTTATGCCCAACAACTGCATATACTAAAGTCTAATTAACCATGGTCAACATTATCTGATTTCCTGGTAAGGTGTAGGCTGTAATACTACAATTAACCAGCCGAATAAACTTCAAATTATTTAAAGGTGGAGATGAGCTTATAAGACACCAACTATACTGACTAGTAAGTGGATTCCAATTAGGCACTCAGAGTTCCCCACATGCCTTCCCAAAGAACACGAAGTAACAATCTGCAGTAGTCAAACTTTTCCTCAGATCTAATCTGGCTCTGCTGTGTAGATCAAGCTGTCACCTATAGTATATCTTGCCTTCTATGACTTTTCTCCTTTGTTCAGTGCTGGAAGTTTATTTATATATATATATATAGAGAGAGAGAGAGAGATGGTAACAAACTTATATTTCAAAAGAGGCTGTGGAGCCATAATTATAATGAGTGTGAGCAAAACCTAAATTAGACAAAAACTATGTTAAACAGACTCTAAAACTTGGATTAGAGTCTCAGTGTCACATATGTACTCCTGTTTACACCAAAACCAAAAAAAGCAAAATACTTCTGTACTGGGTTGCTCTTTCCATCAAAACATCTTAGATTCCTTCCTCTTTAGATTTGTCCACCATATGCAGCCTGAGATCATACTCCATCTATTTTTTTAAAAAATAAATCTTTAGTGCCTCCCTTTCTGTTCTAGCTGGAAATCATCAGTGTAATCATTGGCACTGACCAATTCAAACCAATCATAGCAAAAAGTACGTCCCAGAGTTCTTTGTCACTCTACAGAACAAAAAAAGGTGACTCTTTGTTTCTGCATACTTACCACATAAGTGGCACTGGAGCAAAGTTGTATTCCCCTCCTCTGCAGCCTGTCCCGAGTCGAACAAGCTTGCTTGATTACCAGCCAAATAAAACAAGCCACCTAGTATGGGATTTGTTCCCCGTGCTTCAAAGGCCCATAACAAAACAAGCATATTTTTGTTTTAATCTGTTCTCTAAGCTGAATAGCTGATATAGCATGTTCTTGACATTGCAATAATATGTATTTAATGAATGTCAGGTTCGCTACTTGAAGATTATTGAGAAAAGTGGCTATCAGGCTCTTCCATGGGTGAGATATATTACTATGGCTGGTGAATACGAGTTA</genome_strand>
        <mrna_strand>TAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG.......................................................................................................................................TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAG........................................................................................................GAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTACAGCAGAAGAATCAGTTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAAATTCCTTATTTTACTGTTTCTGGTATACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGCTACTTGAAGATTATTGAGAAAAGTGGCTATCAGGCTCTTCCATGGGTGAGATATATTACTATGGCTGGTGAATACGAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257958" ref_strand="+" ref_description="SGN-E257958 [cLEG-48-K10]">
      <seq>tagtgagatcagatgttgttggtgcactgaagatgagggcatacttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaggggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttataccgccagatggagcctttgatcttatgacctacagacttggtactcaggtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaggagccgtatggaaattgtggttaaagcacggagccagttcaaggaacgaagtactgcaactaatgttgaaattgagttacctgtggcaacggatgctacaaatccaaatgtccgaacatcaatgggatcatctacttatgcacctgaaaaagatgcactgattttggaaaataaatctttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96810" stop="103006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97110" g_stop="97158" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="157" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102150" g_stop="102246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="254" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="352" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102576" g_stop="102706" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="483" r_length="131" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E257958" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97110" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCC</genome_strand>
        <mrna_strand>TAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG.......................................................................................................................................TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTTGGAAAATAAATCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258808" ref_strand="+" ref_description="SGN-E258808 [cLEG-50-D8]">
      <seq>tagtgagatcagatgttgttggtgcactgaagatgagggcatacttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaggggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttataccgccagatggagcctttgatcttatgacctacagacttggtactcaggtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaggagccgtatggaaattgtggttaaagcacggagccagttcaaggaacgaagtactgcaactaatgttgaaattgagttacctgtggcaacggatgctacaaatccaaatgtccgaacatcaatgggatcatctacttatgcacctgaaaaagatgcactgatttggaaaataaaatctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96810" stop="103005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97110" g_stop="97158" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="157" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102150" g_stop="102246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="254" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="352" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102576" g_stop="102705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="482" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E258808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97110" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTC</genome_strand>
        <mrna_strand>TAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG.......................................................................................................................................TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264091" ref_strand="+" ref_description="SGN-E264091 [cLEG-64-C2]">
      <seq>gtgagatcagatgttgttggtgcactgaagatgagggcatacttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaggggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttataccgccagatggagcctttgatcttatgacctacagacttggtactcaggtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaggagccgtatggaaattgtggttaaagcacggagccagttcaaggaacgaagtactgcaactaatgttgaaattgagttacctgtggcaacggatgctacaaatccaaatgtccgaacatcaatgggatcatctacttatgcacctgaaaaagatgcactgatttggaaaataaaatctttcccaggtggtaaggaatatatgttgagagcggagtttactcttcccagtattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96812" stop="103162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97112" g_stop="97158" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="155" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102150" g_stop="102246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="252" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="350" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102576" g_stop="102717" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="492" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102718" i_stop="102821" i_length="104">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102822" g_stop="102862" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="533" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E264091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97112" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102717"/>
          <exon e_start="102822" e_stop="102862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAGGTTAGTGTTGACTTGATCATAGTTGAAGTTTTAACTCATTGTTTAACTTTTCTGATTGTTCTCTTGTTGACATTTGCCTATATGTAATGCCATTTCTTTTTCAGGAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTAC</genome_strand>
        <mrna_strand>GTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG.......................................................................................................................................TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAG........................................................................................................GAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258676" ref_strand="+" ref_description="SGN-E258676 [cLEG-50-D7]">
      <seq>atcagatgttgttggtgcactgaagatgaaggcatacttgagtggcatgcctgagtgtaatcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaagggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttataccgccagatagagcctttgatcttatgacctaccaacttggtactcacgtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaagagccgtatggaaattgtgggtaaagcacggagccagttcaaggaaccaaatactgcgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96817" stop="102739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97117" g_stop="97158" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="150" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102150" g_stop="102246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="247" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="345" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102576" g_stop="102586" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="356" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E258676" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97117" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTA</genome_strand>
        <mrna_strand>ATCAGATGTTGTTGGTGCACTGAAGATGAAGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAATCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAAGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATAGAGCCTTTGATCTTATGACCTACCAACTTGGTACTCAC................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAAGAGCCGTATGGAAATTGTGGGTAAAGCACGGAGCCAGTTCAAGGAACCAAA.......................................................................................................................................TACTGCGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697406" ref_strand="+" ref_description="SGN-E697406 [FA02DB02]">
      <seq>agccctttttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaggggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttataccgccagatggagcctttgatcttatgacctacagacttggtactcaggtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaggagccgtatggaaattgtggttaaagcacggagccagttcaaggaacgaagtactgcaactaatgttgaaactgacttacctgtggcaacggatgctacaaatccaaatgtccgaccatcaatgggatcatctacttatgcacctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101394" stop="102972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101691" g_stop="101812" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102150" g_stop="102246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="218" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="316" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102576" g_stop="102672" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="413" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E697406" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101691" e_stop="101812"/>
          <exon e_start="102150" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAA</genome_strand>
        <mrna_strand>AGCCCTTTTTG-AGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG.......................................................................................................................................TACTGCAACTAATGTTGAAACTGACTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGACCATCAATGGGATCATCTACTTATGCACCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712160" ref_strand="+" ref_description="SGN-E712160 [FB04AC11]">
      <seq>atcttatgacctacagacttggtactcaggtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaggagccgtatggaaattgtggttaaagcacggagccagttcaaggaacgaagtactgcaactaatgttgaaattgagttacctgtggcaacggatgctacaaatccaaatgtccgaacatcaatgggatcatctacttatgcacctgaaaaagatgcactgatttggaaaataaaatctttcccaggtggtaaggaatatatgttgagagcggagtttactcttcccagtattacagcagaagaatcagttcctgagagaaaagctcctatacgtgtgaaatttgaaattccttattttactgtttctggtatacaggttcgctacttgaagattattgagaaaagtggctatcaggctcttccatgggtgagatatattactatggctggtgaatacgagttaagactagtataaggtcaaagcacagatgatgtttccagccaattgagtttgtagaaggcctcagttaactcccaagttctagaattttgagctgcttggcaaaaggcaactgctcgttcaaaccggatgttaaacaatattttccagggaccgttttgttgtttgtaatcgactcttatatgtaatagtgttcattttcttgtatcataaacttatgacggtaagtttcatatccaatatttcttcaaggcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101918" stop="105298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102218" g_stop="102246" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="127" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102576" g_stop="102717" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="269" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102718" i_stop="102821" i_length="104">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102822" g_stop="102944" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="392" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102945" i_stop="104657" i_length="1713">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104658" g_stop="104993" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="728" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="731" polyA_stop="742"/>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E712160" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102218" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102717"/>
          <exon e_start="102822" e_stop="102944"/>
          <exon e_start="104658" e_stop="104993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAGGTTAGTGTTGACTTGATCATAGTTGAAGTTTTAACTCATTGTTTAACTTTTCTGATTGTTCTCTTGTTGACATTTGCCTATATGTAATGCCATTTCTTTTTCAGGAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTACAGCAGAAGAATCAGTTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAAATTCCTTATTTTACTGTTTCTGGTATACAGGTAAGCCCTCGACTCTTTTTCCTATTCTAAGATCAGCAATTTATCCATAGAAATATATTTGTTCAAGAAGGGTTCCAAAAGATGTTGATTGTAAATGTAAAGACCACACTCCACAGTTGTGGCTCTCAGAAAGAGTATTACAAAGGCATAGTCGTACTAACCCCTAAAAGCATTGGTTTTACTTAGTCGTAGACTTCCAAGTCTGCATTCCCTTATTTCTGTAATCTTTAGGCCCATGTTGATATCCTTGCTTGGTCTATCATATTAAGAAACCACCGAGTCTCGGATGAGCTGTTAATTCTATGTACTTGATTAGTTCTCAGGCTGGGATGGCAGGAGGGGAGTCAGATGGGATTAGGAATTAGGACTTACAGTGAGTGTTGGCACTTCAAATGGTATTGGGAATTTAGGGTTATTGTAGTGCAAAGGCATATTGGGGATAATGAGGTGATGTGGCTGGTTCGATTCTGCTGTAGACGCACATTGTAAAAATCTTAGAATTGGCACAACAGAACACAAAATGTCCATTTAGTTGAACTCCTTTTTAAATTATTTTCCTTGCTAGTGGTTATTGTTGGTATTGCTTGACACTGCAATATGAAAAGAGAGGCAGGGCGGGGGTTCTGTGCTGGAAGAGGGCAATGTATAGCTGATTGTCATCTTTATGCCCAACAACTGCATATACTAAAGTCTAATTAACCATGGTCAACATTATCTGATTTCCTGGTAAGGTGTAGGCTGTAATACTACAATTAACCAGCCGAATAAACTTCAAATTATTTAAAGGTGGAGATGAGCTTATAAGACACCAACTATACTGACTAGTAAGTGGATTCCAATTAGGCACTCAGAGTTCCCCACATGCCTTCCCAAAGAACACGAAGTAACAATCTGCAGTAGTCAAACTTTTCCTCAGATCTAATCTGGCTCTGCTGTGTAGATCAAGCTGTCACCTATAGTATATCTTGCCTTCTATGACTTTTCTCCTTTGTTCAGTGCTGGAAGTTTATTTATATATATATATATAGAGAGAGAGAGAGAGATGGTAACAAACTTATATTTCAAAAGAGGCTGTGGAGCCATAATTATAATGAGTGTGAGCAAAACCTAAATTAGACAAAAACTATGTTAAACAGACTCTAAAACTTGGATTAGAGTCTCAGTGTCACATATGTACTCCTGTTTACACCAAAACCAAAAAAAGCAAAATACTTCTGTACTGGGTTGCTCTTTCCATCAAAACATCTTAGATTCCTTCCTCTTTAGATTTGTCCACCATATGCAGCCTGAGATCATACTCCATCTATTTTTTTAAAAAATAAATCTTTAGTGCCTCCCTTTCTGTTCTAGCTGGAAATCATCAGTGTAATCATTGGCACTGACCAATTCAAACCAATCATAGCAAAAAGTACGTCCCAGAGTTCTTTGTCACTCTACAGAACAAAAAAAGGTGACTCTTTGTTTCTGCATACTTACCACATAAGTGGCACTGGAGCAAAGTTGTATTCCCCTCCTCTGCAGCCTGTCCCGAGTCGAACAAGCTTGCTTGATTACCAGCCAAATAAAACAAGCCACCTAGTATGGGATTTGTTCCCCGTGCTTCAAAGGCCCATAACAAAACAAGCATATTTTTGTTTTAATCTGTTCTCTAAGCTGAATAGCTGATATAGCATGTTCTTGACATTGCAATAATATGTATTTAATGAATGTCAGGTTCGCTACTTGAAGATTATTGAGAAAAGTGGCTATCAGGCTCTTCCATGGGTGAGATATATTACTATGGCTGGTGAATACGAGTTAAGACTAGTATAAGGTCAAAGCACAGATGATGTTTCTAGCCAATTGAGTTTGTAGAAGGCCTCAGTTAACTCCCAAGTTCTAGAATTTTGAGCTGCTTGGCAAAAGGCAACTGCTCGTTCAAACCGGATGTTAAACAATATTTTCCAGGGACCGTTTTGTTGTTTGTAATCGACTCTTATATGTAATAGTGTTCATTTTCTTGTATCATAAACTTATGACGGTAAGTTTCATATCCAATATTTCTTCAAG</genome_strand>
        <mrna_strand>ATCTTATGACCTACAGACTTGGTACTCAG................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG.......................................................................................................................................TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAG........................................................................................................GAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTACAGCAGAAGAATCAGTTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAAATTCCTTATTTTACTGTTTCTGGTATACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGCTACTTGAAGATTATTGAGAAAAGTGGCTATCAGGCTCTTCCATGGGTGAGATATATTACTATGGCTGGTGAATACGAGTTAAGACTAGTATAAGGTCAAAGCACAGATGATGTTTCCAGCCAATTGAGTTTGTAGAAGGCCTCAGTTAACTCCCAAGTTCTAGAATTTTGAGCTGCTTGGCAAAAGGCAACTGCTCGTTCAAACCGGATGTTAAACAATATTTTCCAGGGACCGTTTTGTTGTTTGTAATCGACTCTTATATGTAATAGTGTTCATTTTCTTGTATCATAAACTTATGACGGTAAGTTTCATATCCAATATTTCTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361117" ref_strand="-" ref_description="SGN-E361117 [cLPP-13-B5]">
      <seq>atatatatatatatatatatatattccnttaatggtggattcctatatatactaataaatattcgtaaccaacggtagaataaaataggccaaagtcatatgcggccactcaaacttgtcccgattattcatttagacacctcaactagacgtactacttattgaacacttcaaccattctgaatttgaatcatttgaacattttttcgagaataaacaaaaaatagagaatgtgtgaaatacactcgcgctgacatgtcaatttgaccaatcaaataatgacatgtgttattttttaatccaaaaaattatttaaacattatattataaagtaaaaaaaataaaaattattttaaagtaaaaaaaatttaaaaaaaaagtaaaacctaaacacctccctgccttcaactggaacaaaacatacattttctttaactccattaatggcgaccccccctccctgtacagttctatctttaaccctacaaatttttttttcatcagcttttattaattataactttttacttcatctcgttttttaggtagagaaagatggggaaaagaatctcttcgaaaaatttataaatgaaacaaaatgctaagaattttgaaaccattagaatggtgggggaagaagataaccactgatactaagaattttgaaatcattagaatgatggggaagaagataaccactggtgtatggggataggggttggggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="84509" stop="116597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107676" g_stop="107714" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.795"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107715" i_stop="109721" i_length="2007">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.667" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109722" g_stop="109763" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="80" r_length="41" r_score="0.524"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109764" i_stop="115632" i_length="5869">
            <donor d_prob="0.900" d_score="0.52"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115633" g_stop="116297" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="727" r_length="647" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E361117" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361117" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107676" e_stop="107714"/>
          <exon e_start="109722" e_stop="109763"/>
          <exon e_start="115633" e_stop="116297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATATATATATATATATATATATTAAATTATGTAAATTGATTCCTAACCAAAATTTACACAAACAAGAATATACAGTTTCATGATACTCTAAGAAGTTATGATCAAAAAAAAAGTAATCTTACCTTCTATGTTCAAAGAGGTGAAATAACTATGATACACACATTTATCTATCCAAGTAAGATGACTTTCAACTAATCAAAAAACATATATGAATAATTCGAATTAAAGACAGTAACTTATAATGTGAATAGAGAACATAAATAAAGTAGAAAAGAAAGACACAAATACAAAATAAATATGAGAAAATGTACCCACACAAACTAGTATTGATAATCTAATAATTTGATGAATTAGGATAGTAGTCTTGTGATTTTTCACTATGTATGCACAATATTAGTAGTATTTAGTGAATGAATATATTGTATTGAATTGATCAAAAAAATTTACTCCACATTGAATACACCAACCAACTTTTCAAATTCTTCATATGCTTATTAATACGAAGAGATGTTTTATATTTTGCATTACAAATTGGAAAATAAAAAATTTACATAAATTAAACGTATAACTCCATGTCTTTTAATTTATCCAGTTCATATTTATTTGAAAGACTTATTTTTTAGCAAAAAAATATAACATAAATAGGAGTTAAATAAATGAAAAAATACTAATGCATATTTTTATGTATATATGTTCAATAGCCTAATGCATTGAAGTAAGTGTATATTTATATTCTTGTACAATATTATTGCGGGAATAATATTTAATTGAAGGATATTAATGTCATTAAATATTTTATGGATATTTTGATAATTCAATTTTTAACATATTTTGGTTCCACTTATATATATACTACTATTTACTGGAGTAATTTAATAGAAGTGTTATTTCTCTTTGTTTTTATATGTGAAGGAAAAGTGACAAATTAATATATGATTACTATTAAATATTTAATTAATAAAATATTTTATAACTTTTTTATTTAGTATAGGGTAAAACGGCAATTCAAATTTAAATTTTGGAGCTTTCCACTTTTAATTATTATTATTTTTATTAGTTATATTATTTATGGTAATATGATGATAAGTTGGGAAAATGAAGAGGTATAGCTACGAAATTGCTTTTAAATGGAGAAATAATTTCTTAAAATGATTTTAAGAAAAATAAATTAATAGGTAAGGGGTATTTTCATGATTTAACTTTTGACTTACATTCTTTCTACCTTTAATAGTATTATGTCTCGAGTACGTGCGTTGCACGTGTATTTCATGCTAAGTAATTTTAAAAATAATAATATTAGCTCAAACTTGCGATGAGTTATATGAATTTTGAAAGCGAAGATTACCTTTTGTCTGATTTAAGCTTATAGTCATTTCATCTTTGAATTTAACATAAATAATTAATAAAATATTTTGTGTGTATATATATATATATCGGATGTAATATGACAAACGATTAAAATCAACGTGTTTCACGCATTTGAACACTGCAATAGACAAATAACTTCAAATTTTTTATTAAACCTTTAAAGTATATAATCTCATGTTTATCATTTTTTTTCTGTAGTTATCCATGTTACATCTTAAAGCGTAACACAAATTAAAGATTAACAATATGAAGGCACAATAATTTTAACTAATTAATCAACATCATGGGAGGTAAACTACCACAAAATGGTTCTTTGACAAAAACTGCTTCAAGTCTTATTGCCTCAAATCAGTAATCAACTTGAAGAATATCTAGCTTTCAATTTAAATAACAATACACTTACCTAAATTACTGTGCAAATCAATTGTGAAACTGCATCTTATAATTTTTCCAATAATGTTATATATATTATATAAAACTTAATAGAGTACATGAAAAGTATTCTAACAGTTGAAAATTAAAAGAATTAACAAATTTAAAATTAATGGATAAGTCCATATAATTATAAAATAAAAGATAAACTAAGGACTAGTCAAATTCATGAACTTTACAATAATATTTCACAATTTATTAATTTATTATTAAAAGGTAAATGTATTATTTGATTGACAGTATAAAAATATTTTGAACAAGTAGGGGTAGATAGGGGAAAAAATATCCTATATGAAGGTGACTAAAATGTATATATTCATGAAATAGTGACAAAACGAACCAACAATACATTTCGTAATCATTTAAATTTAATTATTCATATAATTTTGCCTTTTTATAAATCTTTTCTGATGTGCATACAGTTATTTCATCATAGATTTTTACGAAGGAACTTTGACGAAGATGAAGTATTGAGAAGTCTTAAAACTATGTGCAATGTATAAAGCCCTAGGACTTGATGGTTTCACCGTGGATTTTTACTTTAAATGCTGGGAGATCGTAAAACATGACATAATGAATACCAAATTTTTCATGACCAAGAAGTGTTGGAAAAAAGCTTCAATGCTACTTTCATTGCTTTCATTCCCAAGAAAAAAGGTATCACCGAGTTGAGAGCTTTCAGATCTATTAGCCTGATAGAAAGCATCTATAAAATCTTCTCAAAAGTACTAACAGAGAGATTGAAATGGGTGATTGAAAAATTGGTAGGTTCTCATAAAAACCAAGGTTAAGGTTAGAAAGGGGAAAAAACAAGCTTCTGGGAAGATGACTAGCATGAGATGGGGATTCTAAATAATATCTACCCAGATATCCACAACTTAATGTTAAACCAACAAAGAACAATTACATGAACGTGGATACCTGATGGGTGGGAAATCAGTTTCAGAAGACAAGCAAATGATTGAAAAATCACAACAGTTGCAGATTTTCTTAACACTATTGGCCAGTTTAAAGGAACATAAGAAGGGGAAGATGAGCTTTGGTGGCAGGGCAGAGGGAGAGGAACCTTTAGTGTAAGCAAAACATACATATGGTTGAATAGTCACAATCAACAAAATGTCAACCGAAACTAAAAAAACTATATGAAAAACGCATATACCCTACAATGTATCATGTTTTATTTGGCTCTTATCTAAGAAAGTTGTCCTTACACAAGACAATTTGATGAATGTTTTTGCGGAGAACAAGCAGAAATTATTTGACATTTGTTCCTTAACTTTCATATCACATGTCAACTTTGGAGGCTATTCATAAACTTTCAAGGTTTCTCGTAGACTATGCAGGAAAGGTTACAGAGGCCCTTCAAAGTTTGGAAGAAGGTAGGGTTCTAGCAAAAAGCAGAAGTACGTGGAAAATCATATTAATCAACATATAGTGGACAATCTAGAAGCATAGAAATTCTAAGTGTTTTGAGAACATAGAAAATGATATGGAACAAATCAAACTAAATTGTGTCTTGATTCTATGTTTTTGGTGTAATCAAATTCAGTCTAATGATCTTGTATCTATTATTGAAGTCTTAAATTCAACATTAGGATCCCAATTTACTTGTAAATATGATCCTAGTAGTTACCAGTTTAAAAAAACACATTTAAAAACTTATTTGTTGTCGTACATATAATTCAAATGCATAATATACTATTAAGAGATTTAACATGTACGAGACACAAAATACTAATAGACAAAATATCTTTAATAAAAATCATTGCAAAGCACGTGTAGTACGTACCATTATTGAAATAGAATAACAAAATTATAAAATATAACACACACATAATATATTCTTTCATGACTAAAATTGGAAAAATTATGCACTATGATAATTAAATTTCAAGTCAATTATTGCAATGGAAAGTAATTTTTTTTTCATAATGAAAATTATAGTAAAACATTTTTATTGAATTAACACTCAAATTTGAGCTTTATGGTAAGTAAATCTGAAATTTTAATTTAAAATAGGTAAATATTTAATATACTAAATGAAATTTATCAATTAATGATGAAGTGTTCTAAATATAATTTGATGGATTATTAACTACATACAAAATGCACATTTGCTTACCCTAAAACTCAGATTTGAGCGTCAATTAAATATAAATGTTGTACTATAATTTTCAATCATGAAAAAAAGATTATCTTCCATTACAATATTTGACTTGAAATTTTTAATTATCATGGTAAATAATTTTTTAAATTCTTTCAATTCCTTTATAGTAACTAAATCAACATTTTCACTTGCTCAAATAAATCTATCATTTAACTTGGAAAGAGAAGTACAGTAATATACTTACAGTTTTAAACATACATATTCAATTTAAAATGACATTTAATATAATTAACAATTTAACTTGATCCGTAAATGCTTTAATAAACAACTATAATGAAAATCAAACTTTTGACATGTATTAAAATAACCAAAATTAAAATTCAACTTAAATTATATTTAAAAATTTTATATACTTACTAGAATAAAAGATTTTTTTCTAGACTAATTAATTTTTGGAAATGCATTATCAATTTAAAAGTTGAATTTTAGTGCTAACATTTTACCGTAGACATACTTGATTTCACTCCCTCGCATTGACTATGCCCCTTTTGGCATCAACCCACCCCACACCCACTAAAATGATGTAACAATATCAAAATACAAGCCACTATTGATACTTCCCGTTTTGGGCCTAGTCCTACATTACTTTAAACGAATAAATATTATAAAAGATCACTAAACTATAAGAAATTATGTGCTTGTGAATTGCGAAGAAGCGCAACGAACAGTGTTGGACCAATGCAACAACTCAACTTATGTGTTTAGGAGTGCACATTTAATTATATGTTCCTTAATTAAGTATATACATGTGTTAATGGGTACACGTGCACCCACTCTTTCACACGTGGGTAAAACTCGATTATGAACTAATTGGTCTATACTTCTAATTACTTGGCGGGTAGCTTATTACATGAGCCATGCGCAGGAACTTAGCTTCCATTTCTTACCAAAAGTACCTCTTTAAGGTAACACTTTACAAAATGAACCGATTTTAAAAGCTTGACCAAACAGGCTATCGAAGCTTATCAACTAAAATCCAACTCGTACATCACCTCTATCAGCATCTATCAGTAAGTTCACATACATACAACTAATACAATTTCATAACTTAGCACAACCAATCCAAGAATTGAAAAAACATATACAAATTCAGAAAGATATATACTAGTGCAGATCCAATTATTGTATTGTGTCAAACTTTTGGGAGAAAGTAAGTGCTTATAGAGAGTAGCATAAGTCATTTTTTAGAAGCTAACATAGTTCACCTTATGATGGATGGTCTTGACCTCAGTATACACTTTGAGGTTGCTAGTTCAAATCTCGCTTGAGATTTTTAATGTCTTTTTTTGAAAAAAACAAAAACAAAAACGAAGTGAAAATGCAACAGTCAGAATCGAACTCAGCTTACTATGCTTGTGAGTTGCGAAGAAGCCCAATGAACAGTATTGGACCAATGCAACAACTCAACTTATATATTTGAGAGTGCACATTTAATTATATGATCCATAATTAAGTATATACATGTATTAACGGGTGCAAGTGAGTCCAACTCGATTATGAACTAATTGGTCTACACTTTTCACTACTTGGCAGGTAGCTTATTACATGAGCCTTGAGCAGAAACTTAGCTTCCGTTTCACCAAAAGTACTTCGTTGAGGTAACACTGTACAAAATGAACCGATTTTAAAAGCTTGACCGATTTGGCTACCGAAGCTTATCAATTGAAATCCAAATCCTACATCACCTCTATCAACATCTATCAGTAAGTTCACATACATACAACTAAGACAATTTCACAACTCAGCACAATCAATCAAAGAGCTGAAAAAAAAAGATACAAATTCAGAAAGATACATACCAGTACAGATCTAATTCCTAATTCGAGGAAACCACTTTGAATCATGAGGAGTTGTATTGTCAACAAGGAGATGAGGCTTCTTACACCTATTGCAGAAAAATCTGAATGCATAATTCTTATCACCGCAACTACTACACTCCCAATTCCCTTCTTGTCCCATCCCTCTCTCTGTATGTTATCTTCTTCGTCTCTCCGACGGGAGAGAGGGAGAATCTCACCGGCGAGTTTCAACTCTTATAGTACAACAACGAGGGATTTATTGCCATATTTTGCTTTTGTTACTGACGGGCTGAGGAATATCACGTGACTTAAGCCTTTGGCGGAAATTACACTCTTACCTCTAATAACTCGAGAAATTACTTACATCACCTAGCTCAATGATTGTAAAATATTGATCTATATATTATATTAGTGAAATTAGCCGCGCTTCGTGAGATAAAAAGTTACTCGTTAAATTCGTTAAATAACTAATTTTTTGAATAGTTGAGTACTAAATATATTTCTAAAGATTTTTTATAATCTTTAATCGAAATATATAAAATTTAAGTGTTAATTAAGTTTATTATTAGTATTAAATTATAATTTTTTGTAATTTTAAATCACTTAAGAATTTCCGATATTATGGAAAAACCTAAATTTATTCTCTTTATTTTAATAAGAAAAGTAAATTTAATGTATTAAGTTTTCTAATATCTATTATTTTCCTTCAAAAGTTATTATTCTTTCCTTTAATAATGAAAATTTTCCCCCATCTTTCACTAATCTTATATTATGAAATGTTTCACACACACACGCACACACACGCACACGCACACGCGCACACACACACGCGCGCGCGCACACACACGCGCACACACACACGCACACGCACACACACACGCACACACGCACACACACGCACACACACACGCACGCGCGCGCGCACACACACACACGCACGCACACGCACACGCACACGCACACGCACACGAGGCTTAAGTCATCGATAGCCACTTAAAGTTGTCTGCAAATTTCACTTAAACACCTCTTCTTAGGCTTGTTCAAATTGAACACCTAGACAACAAAATTGTTTACCTATTAAACCCCTTTTGCTGACATGACAAAGCGTTTGTGGTACACACAAAGAAAGGAGCGTGAAAGCATAACTTTTCAGTAAAAAAAAAGATTTTATATTTTCTTCTTCTTTGAGAAAGCTCATCACCATTTTTCCATGGCAAGCTGCAACCATCACCGCTCATAATTCTGCAACCATCACCACTCATAATTCTTTCTCCTTCTTTTTCGATTTACAACCATTCTCTTTCTCCAATACACCAGTTTATCAAATCGGTTGCTATCATCCACAAGTCTACCATTGTCAAACAACCTTAGCCTTTCAAACAACCAACTACACATTCAAATTACCCACTGTAAGTTTTTCAGCTGTAAAAAATGTTATCTCTGCTGCCATCAAAAGCATCTAACCTTGTTCATCTATTTTGTCAAATTAAACCCAAACATAAATTAAATAAAAATCTTAAAACAAAAGAAAAACAAAAAAAGGAAGAAGATGAAACAGAGATTCCTTTCCTTTGAAATGGGATGTTAAGCAAATTTCATTAAATAAAGATTAAAAAAAATTAAAATAACAAGCAATTAGTGATCAATCATCTTTTTACTTTACTTTAGTGTTCATTATTTCCGGCAAACTCCATTTTTTGGGGCAAGAATAATATGAATTTGAAATTATTCTTTGAAATTGTTAATTTATTTAAATTTTAAAGAACTGACAACACAAGAAGAAAAAAGAACATCAATAAATCTAAATGAAGTTTGAGGATAAGAGTAAGATTTAAAAATGGTAGTCTATGGTGTATTTGGGGAAGGTTATGGAGAAAGAGGAGAAGGGTAATGGTGATTTTCTTTTTCTTTTATTTCTAAAAAATATATAATTTTTCCTTATTATTTTTTTAGTTATTCTAGGTCCAATACCACGTGTCTTTTTTTAATTAGTTACTATGCCACATCACCAGCAAGTGTATAACACACACTCTCTTATTTCAGCTGATTGTCTATAAAGTGTTTGATAGGTAAATTTTTTTATTAGTACGGGGGTTCAATTAGAACAAGCCTAAGAAGATGTGTTTAAGTGAATTTTGCGGACAACTTTAAGTGGCTATCGATGACTTAAGCGAAAATACAACTTTAAACTTAGGCCAAAGTCATATGCGGCCACTCAAAGTTGTCCCGATTATTCATTTAGACACCTCAACTAGACGTACTACCTATCGAACACTTCAACCATTCTGAATTTGAACCATTTGAACATTTTTTCGAGAATAAACAAAAAATAGAGAATGTGTGAAATACACTCGCGCTGACATGTCAATTTGACCAATCAAATAATGACATGTGTTATTTTTTAATCCAAAAAATTATTTAAACATTATATTATAAAGTAAAAAAAATAAAAATTATTTTAAAGTAAAAAAAAAAAGAAAAAAAAAAGAGAAAAACCTAAACACCCACTTCCCTGCCTTCAACTGGAACAAAACATACATTTCCTCTAACTCCATTAATGGCGACCCCCCCCCCCCCTTCCCTGTACAGTTATCTTTAACTCAACAAATTTTTTTTTCATCAGCTTTTTTATTAATTATAATTTTTTACTTCATCTCGTTTTTTAGGTAGAGAAAGATGGGGAAAAGAATCTCTTCGAAAAATTTATAAATGAAACAAAAATGCTAAGAATTTTGAAACCATTAGAATGGTGGGGGAAGAAGATAACCATTGATACTAAGAATTTTGAAATCATTAGAATGATGGGGGAAGAAGATAACCACTGGTGTATGGGTATGGGGGTTGGGGTGG</genome_strand>
        <mrna_strand>ATATATATATATATATATATATATTCCNTTAATGGTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTATATATACT-AATAAATATTCGTAACCAACGGTAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA-ATAGGCCAAAGTCATATGCGGCCACTCAAACTTGTCCCGATTATTCATTTAGACACCTCAACTAGACGTACTACTTATTGAACACTTCAACCATTCTGAATTTGAATCATTTGAACATTTTTTCGAGAATAAACAAAAAATAGAGAATGTGTGAAATACACTCGCGCTGACATGTCAATTTGACCAATCAAATAATGACATGTGTTATTTTTTAATCCAAAAAATTATTTAAACATTATATTATAAAGTAAAAAAAATAAAAATTATTTTAAAGT---AAAAAAAATTTAAAAAAAA-AGTAAAACCTAAACA--C-C-TCCCTGCCTTCAACTGGAACAAAACATACATTTTCTTTAACTCCATTAATGGCGA--CCCCCCCTCCCTGTACAGTTC---TATCTTTAACCCTACAAATTTTTTTTTCATCAGC--TTTTATTAATTATAACTTTTTACTTCATCTCGTTTTTTAGGTAGAGAAAGATGGGGAAAAGAATCTCTTCGAAAAATTTATAAATGAAAC-AAAATGCTAAGAATTTTGAAACCATTAGAATGGTGGGGGAAGAAGATAACCACTGATACTAAGAATTTTGAAATCATTAGAATGAT-GGGGAAGAAGATAACCACTGGTGTATGGGGATAGGGGTTGGGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547448" ref_strand="+" ref_description="SGN-E547448 [TUS-71-F9]">
      <seq>cccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataggtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtgggcgcatatgactttgggctattttattctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="116598" stop="115335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116298" g_stop="115627" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E547448" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116298" e_stop="115627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCAACCCCCATACCCATACACCAGTGGTTATCTTCTTCCCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAATGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAATTATAATTAATAAAAAAGCTGATGAAAAAAAAATTTGTTGAGTTAAAGATAACTGTACAGGGAAGGGGGGGGGGGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAGGTTTTTCTCTTTTTTTTTTCTTTTTTTTTTTACTTTAAAATAATTTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCGATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAACTTTGAGTGGCCGCATATGACTTTGGCCTAAGTTTAAAGTTG</genome_strand>
        <mrna_strand>CCCACCCCAACCCCTATCCCCATACACCAGTGGTTATCTTCTT-CCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCA-TTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATGAAAAAAAAATTTGTAGGGTTAAAGAT-A--G-A-ACTGTACAGGGAGGGGGGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAAGGCAGGG-A---GGTGTTTAGG-TTTT-AC-TTTTTTTTT-AAATTTTTTTTACTTTAAAATAATTTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGGCGCATATGACTTTGGGCT-ATTTTATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327705" ref_strand="+" ref_description="SGN-E327705 [cTOC-20-M11]">
      <seq>ttttaaaatcaaactataaaaatttttaataaatattttataatatatttatttattatattaacagtgaaaaaagttgcaataattatccaaaggcaaaggcagctgcacagtaaaacttgtcagtctctcctccaaatctccattgctctgaaatttgcgctgtcaaatactagtagatttatttatgtattaatgggaagcaagtattccaaggcaacaaattccataagtgatgcttcaaactcttttgaaagttatcgatttcctttagaagatttggaggaagcaaccaacaattttgatgacaagtttttcattggagagggtgcatttgggaaggtttacaagggtgttttgcgtgatggaacaaaggtcgccctgaaaaggcaaaatcgtgactcccggcaaggtattgaagagttcggaacagaaattgggatactctcacgccgtagccatccgcatctggtttcattgataggatactgtgatgaaagaaatgagatggttctaatttatgactacatggagaatgggaacctcaagagccatttgactggctcagatctaccctccatgagctgggagcagaggctggagatatgcataggggcagccagaggtctacactaccttcatactaacggagttatgcatcgtgatgtcaaatctcaaacatattgcttgatgagaattttgtgcaaaaatactgactttggactatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="127439" stop="128867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127739" g_stop="127891" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127892" i_stop="127987" i_length="96">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.420" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127988" g_stop="128567" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="730" r_length="577" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E327705" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127739" e_stop="127891"/>
          <exon e_start="127988" e_stop="128567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAATCAAACTATAAAAATTTTTAATAAATATTTTATAATATATTTATTTATTATATTAACAGTGAAAAAAGTTGCAATAATTATCCAAAGGCAAAGGCAGCTGCACAGTAAAACTTGTCAGTCTCTCCTCCAAATCTCCATTGCTCTGGTAATGTTATTGCTGTAGTTGAGATTTTTGTGAATTAGGGTTCATTTTTTCTTTTGAATCATGAGATTTACTTGTAACTCTCCGATTTTGCTGTAGAAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAATGAGATGGTTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGACTGGCTCAGATCTACCCTCCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAACGGAGTTATGCATCGTGATGTCAAATCTTCAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGACTTTGGACTATCCA</genome_strand>
        <mrna_strand>TTTTAAAATCAAACTATAAAAATTTTTAATAAATATTTTATAATATATTTATTTATTATATTAACAGTGAAAAAAGTTGCAATAATTATCCAAAGGCAAAGGCAGCTGCACAGTAAAACTTGTCAGTCTCTCCTCCAAATCTCCATTGCTCTG................................................................................................AAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAATGAGATGGTTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGACTGGCTCAGATCTACCCTCCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAACGGAGTTATGCATCGTGATGTCAAATC-TCAAACATATTGCTTGATGAGAATTTTGTG-CAAAAA-TACTGACTTTGGACTATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328803" ref_strand="+" ref_description="SGN-E328803 [cTOC-23-P4]">
      <seq>ttttaaaatcaaactataaaaatttttaataaatattttataatatatttatttattatattaacagtgaaaaaagttgcaataattatccaaaggcaaaggcagctgcacagtaaaacttgtcagtctctcctccaaatctccattgctctgaaatttgcgctgtcaaatactagtagatttatttatgtattaatgggaagcaagtattccaaggcaacaaattccataagtgatgcttcaaactcttttgaaagttatcgatttcctttagaagatttggaggaagcaaccaacaattttgatgacaagtttttcattggagagggtgcatttgggaaggtttacaagggtgttttgcgtgatggaacaaaggtcgccctgaaaaggcaaaatcgtgactcccggcaaggtattgaagagttcggaacagaaattgggatactctcacgccgtagccatccgcatctggtttcattgataggatactgtgatgaaagaaatgagatggttctaatttatgactacatggagaatgggaacctcaagagccatttgactggctcagatctaccctccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="127439" stop="128716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127739" g_stop="127891" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127892" i_stop="127987" i_length="96">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.420" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127988" g_stop="128416" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="582" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E328803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127739" e_stop="127891"/>
          <exon e_start="127988" e_stop="128416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAATCAAACTATAAAAATTTTTAATAAATATTTTATAATATATTTATTTATTATATTAACAGTGAAAAAAGTTGCAATAATTATCCAAAGGCAAAGGCAGCTGCACAGTAAAACTTGTCAGTCTCTCCTCCAAATCTCCATTGCTCTGGTAATGTTATTGCTGTAGTTGAGATTTTTGTGAATTAGGGTTCATTTTTTCTTTTGAATCATGAGATTTACTTGTAACTCTCCGATTTTGCTGTAGAAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAATGAGATGGTTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGACTGGCTCAGATCTACCCTCCATG</genome_strand>
        <mrna_strand>TTTTAAAATCAAACTATAAAAATTTTTAATAAATATTTTATAATATATTTATTTATTATATTAACAGTGAAAAAAGTTGCAATAATTATCCAAAGGCAAAGGCAGCTGCACAGTAAAACTTGTCAGTCTCTCCTCCAAATCTCCATTGCTCTG................................................................................................AAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAATGAGATGGTTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGACTGGCTCAGATCTACCCTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721385" ref_strand="+" ref_description="SGN-E721385 [FC13CH09]">
      <seq>tattaacatgaacccagttgcaataattatccaaaggcaaaggcagctgtacagtaaaacctgtcagtctctcctccaaatctccattgctctggtaatgttattactgtagttgagatatttgtcaattagggttcattttttcttttgagtcatgagatttacttgcaactttccgattgtgctgtagaaatttgcgctgtcaaatactagtagatttatttatgtattaatgggaagcaagtattccaaggcaacaaattccataagtgatgcttcaaactcgagatatggcgttccttttgaaaattatcgagttcctttagtagatttggaggaagcaaccaacaactttgatgacaattttttcattgcagaaggtggatttgggaaggtttacaggggtgttttgcgtgatggaacaaaggtcgccctgaaaaggcataattgtgactcccaacaaagtattgaagagttccgaacagaaattgagatactctcacgccgtagccatccgcatctggtttcattgataggatactgtgatggaagaaatgagatgattctaatttatgactacatggagaatgggaacctgaagagccatttgtatggctcaaatttaccctccatgagctgggagcagaggttggagatatgcataggggcagccagaggtctccactaccttcatactaacggagttatgcatcgtgatgtcaaatcttcaaacatattgcttgatgagaattttgtgccaaaaattactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="127513" stop="128854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127797" g_stop="128554" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E721385" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127797" e_stop="128554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAACAGTGAAAAAAGTTGCAATAATTATCCAAAGGCAAAGGCAGCTGCACAGTAAAACTTGTCAGTCTCTCCTCCAAATCTCCATTGCTCTGGTAATGTTATTGCTGTAGTTGAGATTTTTGTGAATTAGGGTTCATTTTTTCTTTTGAATCATGAGATTTACTTGTAACTCTCCGATTTTGCTGTAGAAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGC-T-----TC-A-A-A---C--T-CTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAATGAGATGGTTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGACTGGCTCAGATCTACCCTCCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAACGGAGTTATGCATCGTGATGTCAAATCTTCAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGAC</genome_strand>
        <mrna_strand>TATTAACA-TGAACCCAGTTGCAATAATTATCCAAAGGCAAAGGCAGCTGTACAGTAAAACCTGTCAGTCTCTCCTCCAAATCTCCATTGCTCTGGTAATGTTATTACTGTAGTTGAGATATTTGTCAATTAGGGTTCATTTTTTCTTTTGAGTCATGAGATTTACTTGCAACTTTCCGATTGTGCTGTAGAAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCGAGATATGGCGTTCCTTTTGAAAATTATCGAGTTCCTTTAGTAGATTTGGAGGAAGCAACCAACAACTTTGATGACAATTTTTTCATTGCAGAAGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCATAATTGTGACTCCCAACAAAGTATTGAAGAGTTCCGAACAGAAATTGAGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGGAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTGAAGAGCCATTTGTATGGCTCAAATTTACCCTCCATGAGCTGGGAGCAGAGGTTGGAGATATGCATAGGGGCAGCCAGAGGTCTCCACTACCTTCATACTAACGGAGTTATGCATCGTGATGTCAAATCTTCAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327769" ref_strand="+" ref_description="SGN-E327769 [cTOC-20-D5]">
      <seq>tctcctccaaatctccattgctctggtaatgttattgctgtagttgagatttttgtgaattagggttcattttttcttttgaatcatgagatttacttgtaactctccgattttgctgtagaaatttgcgctgtcaaatactagtagatttatttatgtattaatgggaagcaagtattccaaggcaacaaattccataagtgatgcttcaaactcttttgaaagttatcgatttcctttagaagatttggaggaagcaaccaacaattttgatgacaagtttttcattggagagggtgcatttgggaaggtttacaagggtgttttgcgtgatggaacaaaggtcgccctgaaaaggcaaaatcgtgactcccggcaaggtattgaagagttcggaacagaaattgggatactctcacgccgtagccatccgcatctggtttcattgataggatactgtgatgaaagaaatgagatggttctaatttatgactacatggagaatgggaacctcaagagccatttgactggctcagatctaccctccatgagctgggagcagaggctggagatatgcataggggcagccagaggtctacactaccttcatactaacggagttatgcatcgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="127567" stop="128800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127867" g_stop="128500" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E327769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127867" e_stop="128500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCAAATCTCCATTGCTCTGGTAATGTTATTGCTGTAGTTGAGATTTTTGTGAATTAGGGTTCATTTTTTCTTTTGAATCATGAGATTTACTTGTAACTCTCCGATTTTGCTGTAGAAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAATGAGATGGTTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGACTGGCTCAGATCTACCCTCCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAACGGAGTTATGCATCGTGAT</genome_strand>
        <mrna_strand>TCTCCTCCAAATCTCCATTGCTCTGGTAATGTTATTGCTGTAGTTGAGATTTTTGTGAATTAGGGTTCATTTTTTCTTTTGAATCATGAGATTTACTTGTAACTCTCCGATTTTGCTGTAGAAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAATGAGATGGTTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGACTGGCTCAGATCTACCCTCCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAACGGAGTTATGCATCGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329588" ref_strand="+" ref_description="SGN-E329588 [cTOD-3-E21]">
      <seq>ccaaatctccattgctctggtaatgttattgctgtaggtgagatttttgtgaattagggttcattttttcttttgaatcatgagatttacttgtaactctccgattttgctgtagaaatttgcgctgtcaaatactagtagatttatttatgtattaatgggaagcaagtattccaaggcaacaaattccataagtgatgcttcaaactcttttgaaagttatcgatttcctttagaagatttggaggaagcaaccaacaattttgatgacaagtttttcattggagagggtgcatttgggaaggtttacaagggtgttttgcgtgatggaacaaaggtcgccctgaaaaggcaaaatcgtgactcccggcaaggtattgaagagttcggaacagaaattgggatactctcacgccgtagccatccgcatctggtttcattgataggatactgtgatgaaagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="127573" stop="128638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127873" g_stop="128338" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E329588" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127873" e_stop="128338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCTCCATTGCTCTGGTAATGTTATTGCTGTAGTTGAGATTTTTGTGAATTAGGGTTCATTTTTTCTTTTGAATCATGAGATTTACTTGTAACTCTCCGATTTTGCTGTAGAAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAAT</genome_strand>
        <mrna_strand>CCAAATCTCCATTGCTCTGGTAATGTTATTGCTGTAGGTGAGATTTTTGTGAATTAGGGTTCATTTTTTCTTTTGAATCATGAGATTTACTTGTAACTCTCCGATTTTGCTGTAGAAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324039" ref_strand="+" ref_description="SGN-E324039 [cTOC-3-G21]">
      <seq>gatttgtgtgaattagggttcattttttcttttgaatcatgagatttacttgtaactctccgattttgctgtacaaatttgcgctgtcaaatactagtagatttatttatgtattaatgggaagcaagtattccaaggcaacaaattccataagtgatgcttcaaactcttttgaaagttatcgatttcctttagaagatttggaggaagcaaccaacaattttgatgacaagtttttcattggagagggtgcatttgggaaggtttacaagggtgttttgcgtgatggaacaaaggtcgccctgaaaaggcaaaatcgtgactcccggcaaggtattgaagagttcggaacagaaattgggatactctcacgccgtagccatccgcatctggtttcattgataggatactgtgatgaaagaaatgagatggttctaatttatgactacatggagaatgggaacctcaagagccatttgactggctcagatctaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="127614" stop="128710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127914" g_stop="128410" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E324039" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127914" e_stop="128410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTGTGAATTAGGGTTCATTTTTTCTTTTGAATCATGAGATTTACTTGTAACTCTCCGATTTTGCTGTAGAAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAATGAGATGGTTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGACTGGCTCAGATCTACCC</genome_strand>
        <mrna_strand>GATTTGTGTGAATTAGGGTTCATTTTTTCTTTTGAATCATGAGATTTACTTGTAACTCTCCGATTTTGCTGTACAAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAATGAGATGGTTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGACTGGCTCAGATCTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E741112" ref_strand="+" ref_description="SGN-E741112 [GI|430991]">
      <seq>atgggaagcaagtattctaaggcaacaaattccataaatgatgctttaagctcgagttatctcgttccttttgaaagttatcgagttcctttagtagatttggaggaagcaactaataattttgatcacaagtttttaattggacatggtgtctttgggaaggtttacaagggtgttttgcgtgatggagcaaaggtggccctgaaaaggcgtacacctgagtcctcacaaggtattgaagagttcgaaacagaaattgagactctctcattttgcagacatccgcatctggtttcattgataggattctgtgatgaaagaaatgagatgattctaatttataaatacatggagaatgggaacctcaagagacatttgtatggatcagatctacccacaatgagcatgagctgggagcagaggctggagatatgcataggggcagccagaggtctacactaccttcatactagagcaattatacatcgtgatgtcaagtctataaacatattgcttgatgagaattttgtgccaaaaattactgattttggaatatccaagaaagggactgagcttgatcaaacccatcttagcacagtagtgaaaggaactctcggctacattgaccctgaatattttataaagggacgactcactgaaaaatctgatgtttattctttcggtgttgttttattcgaagttctttgtgctaggtctgccatagttcaatctcttccaagggagatggttaatttagctgaatgggcagtggagtcgcataataatggacagttggaacaaatcgtagatcccaatcttgcagataaaataagaccagagtccctcaggaagtttggagatacagcggtaaaatgcttagctttgtctagtgaagataggccatcaatgggtgatgtgttgtggaaactggagtatgcacttcgtctccaagagtctgttatttaagatatttttgtttttctgagttttatatagaaaaaggtaaactttgaaaacttgaattgctatacctgtggatccttctttcattttattaggtgcgtccggctgttacacatattgtatatggttcttattaagttcttcagacattttgttattgtaaagaggcaaaaaggaagtttgctgctttgacatagtcaatctaaaactatatacattcaactttcagaatggaactataaaagtttgtggagcaattcaaaatgttactcaacctgttcacaaaatgactattgtagagcaataatggttataatatataaccattattgagtaatatttttgtagtagtattgcccaagtccattagcggagaggtaattttctttttggttctctcttccacaatagctatcaatctctctgtcttctcgctaaatttcctcagttgtggtataatcagaggttcctaagccttctgttttgtatacatatatttgtgattttcatctatcatgcttactgttaggagttatattgcttgatgagaattttgtggcaaaaattaatgattttggtcgattcaagaagcttgatcaaacccatgttaccacaatagtaaaggaacttttggttaccttgaccctgaatattatcaaactagtcagctgacagaaaaatctgatgtttattctttcggtgttgttttattagaagttatttgtgctaggcctgcgctggattcatctcgttcgagggagatggtcagctcagttaaatgggcaaaggagtgtcagaagaacggacagtcggaacgaattatagatcccaatcttgttggcaaaataagaccagattcccccaggaagtttggagaaacagctgtgaaatgcttagctgaaactggcgtaaacaggccatcaatgggtgaggtgctcgagaaactggactatgcacttcatctctaagagcctgtcattcaagaaaacagtaccatccctatccgcgagcaaatcaatgatttcagtcatgttgatgacacttcctctgcttcttcggtcaaaattgggctgatctctagtatgaatgcgttcagattttgctcaagaaaacagccgggagaagttcaattaatggttgcactccatgggaaccaactattccaagccaacaacttccataaatgatgcttccaatttgagtaatcgcgttccttttgaaagttttcgagttccttttgtagatttgcaggaagcaactaataactttgatgacaagtttctgattggagtgggtatatttggtaaggattacaggggtgttttgcgtgatggtacaaaggtggccctgaaaagacataagcctgagtctccacaaggtattgaagagttccgaacagaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="127730" stop="131737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128081" g_stop="130053" g_length="1973"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="2052" r_length="1986" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130054" i_stop="131123" i_length="1070">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131124" g_stop="131438" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="2053" r_stop="2367" r_length="315" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E741112" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>2288</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E741112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128081" e_stop="130053"/>
          <exon e_start="131124" e_stop="131438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAATGAGATGGTTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGACTGGCTCAGATCTA-CC-C--T--CCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAACGGAGTTATGCATCGTGATGTCAAATCTTCAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGACTTTGGACTATCCAAGACAAGGCCTCAGCTTTATCAAA-CCA-C--AG-AC----GTGAAAGGAACTTTCGGCTACATTGACCCTGAATATTTTATAAAGGGACGACTTACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTTGAAGTTCTTTGTGCTAGGTCTGCCATGGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAG--AAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTTCATTTTATTAGGTGCGTCCGGCTGTTACACATATTGTATATGGTTCTTATTAAGTTGTTCAGACATTTTCTTATTGTAAAGAGGCAAAAAGGAAGTTTGCTGCTTTGACATAGTC-ATCTAAAACTATATACATTCAACTTTCAGAATGGAACTATAAAAGTTTGTGGAGCAATTCTAAATGTTACTCAACCTGTTCACAAAATGACTATTGTAGAGCAATAATGGTTATAATATATAACCATTATTGAGTAATATTTTTGTAGTAGTATTGCCCAAGTCCATTAGCGGAAAGGTAATTTTCTTTTCGGTTCTCTCTTCCACAATAGCTATCAATCTCTCTGTCTTCTCGCTAAATTTCCTCAGTTGTGGTATAATCAGAGGTTCCTCAAGCCTTCTGTTTTTGTATACATATATTTGTGATTTTCATCTATCATGCTTACTGTTAGGAGTTCATATTGCTTGATGAGAATTTTGTGGCAAAAATTACTGATTTTGGACGATTCAAGAAAGCTTGATCAAACCCATGTTACCACAATAGAAAAGGGAACTTTTGGTTATCTTGACCCTGAATATTATCAAACTAGTCTGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTAGAAGTTCTTTGTGCTAGGCCTGCGCTGGATTCACCTCGTTCGAGGGAGATGGTCAGCTTAGTTAAATGGGCAAAGGAGTGTCAGACGAACGGACAGTCAAAACGAATTATAGATCCCAATCTTGTTGGCAAAATAAGACCAGATTCCCTCGGGAGGTTTGGAGAAACAGCGGTGAAATGCTTAGCTGAAACTGGCGTAGACTGGCCATCAATGGGTGAGGTGCTGCAGAAACTGGACTATGCACTTCATCTCTAAGAGCCTGTCATTCAAGAAAACACTGCCATCCCTATTCGCGAGCAAATCAATGATTTCAGTCATGTTGATGACACTTCCTCTGCTGCTTCGGTCAAAATTGGGCTGATCTCTAGTATGAATGGTACATACCTTCCTTTAGTATTGTTTACATATTTTTTTTTTGTTTTTTAAAGAGTCTTCTGAGTTTTATATAGAATGTTTCACATTGAAAAACTTGAATTACTCTACCTGTAGATCCTGCTTTCATTTTATTAGGTGTGTCACATGTTGTATATGGTTTCTATTAAGTTCTTCATACATAACAAATCATTACATTAATGTCATGGTAGCGAAAACACTTTAGAAAACATGGAACAATTTTTAGGCTCTGGAAAGTTTGCATATGGTAATACACTCTTTTCTTATTGTAAAGAGCCAAAAGGAAGTTTGCATTACTTCTTCTGAGACTGCTCATGAGACTCTTCTTTATTTCAATAAAAAAAAATAGTCAAAACACATTTTGATTTTGCATCATGAAAATGAGTAAATAGTACTCCCTCTGTCTCCATTTACTTGTCAAATTTTTACTTTGCAAGCCTATTAACAAAACAATGATTGATATAGTGAGTTTACCATTTTATCATTATTAATTGATAGGATTTCAAACATATCTACACGCTACATTTTTCAAAGACATGAATTGAATGTTAATAAATTGAGTGTATAATAGAAAAATAAAAATTGTGTTCTTTCTTGATTTGTCAAAAATGACAAATAAAAGGAAAAATTCAAATTAGAAAATATTTGATAAATAAATAGGAACGGAAAGAGTACACAACAAGCAATCATTCTTTTGCACACATAAATTATTAAGTACTATTACTTCTAGAGAAAAAGGCAGTTTCATATAATAATGGAGAAACATAAACAAAAGTAAAAAAAAATAATAGTTTCATATATAAGTTAGATACAGATATATACATTATTAAATTTAGAGAGGTCTAAACTATCAAGTAGTAATCAACAAGTAAATGTCCTAATCAAGACTAAAAAAAGTTTGTGTTTTCTTTATATAGAATTTGTGATTTTTCATCAATTATATACTTGGAATTGTTCTACATTCCTCAATCAGGGTTGACTTTGTTCTTTTCTTATCTATGTTTTCAATTTTGAAATAGTGACCCCTTTCAATCATGTAACTTTTACTTGTAGCGTTCAGATTTTGCTCAAGAAAACAGCCGGGAGAAGTTCAATTAATGGTTGCACTCCATGGGAACCAACTATTCCAAGCCAACAACTTCCATAAATGATGCTTCCAATTTGAGTAATCGCGTTCCTTTTGAAAGTTTTCGAGTTCCTTTTGTAGATTTGCAGGAAGCAACTAATAACTTTGATGACAAGTTTCTGATTGGAGTGGGTATATTTGGTAAGGTTTACAGGGGTGTTTTGCGTGATGGTACAAAGGTGGCCCTGAAAAGACGTAAGCCTGAGTCTCCACAAGGTATTGAAGAGTTCCGAACAGAAATT</genome_strand>
        <mrna_strand>CCTTTTGAAAGTTATCGAGTTCCTTTAGTAGATTTGGAGGAAGCAACTAATAATTTTGATCACAAGTTTTTAATTGGACATGGTGTCTTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAGCAAAGGTGGCCCTGAAAAGGCGTACACCTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGACTCTCTCATTTTGCAGACATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATAAATACATGGAGAATGGGAACCTCAAGAGACATTTGTATGGATCAGATCTACCCACAATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAGAGCAATTATACATCGTGATGTCAAGTCTATAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCCAAGAAAGGGACTGAGCTTGATCAAACCCATCTTAGCACAGTAGTGAAAGGAACTCTCGGCTACATTGACCCTGAATATTTTATAAAGGGACGACTCACTGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGTCTGCCATAGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGATACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAGAAAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTTCATTTTATTAGGTGCGTCCGGCTGTTACACATATTGTATATGGTTCTTATTAAGTTCTTCAGACATTTTGTTATTGTAAAGAGGCAAAAAGGAAGTTTGCTGCTTTGACATAGTCAATCTAAAACTATATACATTCAACTTTCAGAATGGAACTATAAAAGTTTGTGGAGCAATTCAAAATGTTACTCAACCTGTTCACAAAATGACTATTGTAGAGCAATAATGGTTATAATATATAACCATTATTGAGTAATATTTTTGTAGTAGTATTGCCCAAGTCCATTAGCGGAGAGGTAATTTTCTTTTTGGTTCTCTCTTCCACAATAGCTATCAATCTCTCTGTCTTCTCGCTAAATTTCCTCAGTTGTGGTATAATCAGAGGTTCCT-AAGCCTTCTG-TTTTGTATACATATATTTGTGATTTTCATCTATCATGCTTACTGTTAGGAGTT-ATATTGCTTGATGAGAATTTTGTGGCAAAAATTAATGATTTTGGTCGATTCAAG-AAGCTTGATCAAACCCATGTTACCACAATAGTAAA-GGAACTTTTGGTTACCTTGACCCTGAATATTATCAAACTAGTCAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTAGAAGTTATTTGTGCTAGGCCTGCGCTGGATTCATCTCGTTCGAGGGAGATGGTCAGCTCAGTTAAATGGGCAAAGGAGTGTCAGAAGAACGGACAGTCGGAACGAATTATAGATCCCAATCTTGTTGGCAAAATAAGACCAGATTCCCCCAGGAAGTTTGGAGAAACAGCTGTGAAATGCTTAGCTGAAACTGGCGTAAACAGGCCATCAATGGGTGAGGTGCTCGAGAAACTGGACTATGCACTTCATCTCTAAGAGCCTGTCATTCAAGAAAACAGTACCATCCCTATCCGCGAGCAAATCAATGATTTCAGTCATGTTGATGACACTTCCTCTGCTTCTTCGGTCAAAATTGGGCTGATCTCTAGTATGAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCAGATTTTGCTCAAGAAAACAGCCGGGAGAAGTTCAATTAATGGTTGCACTCCATGGGAACCAACTATTCCAAGCCAACAACTTCCATAAATGATGCTTCCAATTTGAGTAATCGCGTTCCTTTTGAAAGTTTTCGAGTTCCTTTTGTAGATTTGCAGGAAGCAACTAATAACTTTGATGACAAGTTTCTGATTGGAGTGGGTATATTTGGTAAGGATTACAGGGGTGTTTTGCGTGATGGTACAAAGGTGGCCCTGAAAAGACATAAGCCTGAGTCTCCACAAGGTATTGAAGAGTTCCGAACAGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391120" ref_strand="+" ref_description="SGN-E391120 [TUS-48-P2](-)">
      <seq>gagcaattttacatcgtgatgtcaagtctataaacatattggttgatgagaattttgtgccaaaaattactgattttggaatatccaagaaagggactgagcttgatcaaacccatcttagcacagtagtgaaaggaactctcggctacattgaccctgaatattttataaagggacgactcactgaaaaatctgatgtttattctttcggtgttgttttattcgaagttctttgtgctaggtctgccatagttcaatctcttccaagggagatggttaatttagctgaatgggcagtggagtcgcataataatggacagttggaacaaatcgtagatcccaatcttgcagataaaataagaccagagtccctcaggaagtttggagatacagcggtaaaatgcttagctttgtctagtgaagataggccatcaatgggtgatgtgttgtggaaactggagtatgcacttcgtctccaagagtctgttatttaagatatttttgtttttctgagttttatatagaaaaaggtaaactttgaaaacttgaattgctatacctgtggatccgtcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="128183" stop="129341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128481" g_stop="129044" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E391120" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128481" e_stop="129044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGAGTTATGCATCGTGATGTCAAATCTTCAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGACTTTGGACTATCCAAGACAAGGCCTCAGCTTTATCAAA-CCA-C--AG-AC----GTGAAAGGAACTTTCGGCTACATTGACCCTGAATATTTTATAAAGGGACGACTTACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTTGAAGTTCTTTGTGCTAGGTCTGCCATGGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAG--AAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTT</genome_strand>
        <mrna_strand>GAGCAATTTTACATCGTGATGTCAAGTCTATAAACATATTGGTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCCAAGAAAGGGACTGAGCTTGATCAAACCCATCTTAGCACAGTAGTGAAAGGAACTCTCGGCTACATTGACCCTGAATATTTTATAAAGGGACGACTCACTGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGTCTGCCATAGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGATACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAGAAAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCGTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347404" ref_strand="+" ref_description="SGN-E347404 [cTOF-33-C3]">
      <seq>tccaagacaaggcctcagctttatcaaaccacagacgtgaaaggaactttcggctacattgaccctgaatattttataaagggacgacttacagaaaaatctgatgtttattctttcggtgttgttttatttgaagttctttgtgctaggtctgccatggttcaatctcttccaagggagatggttaatttagctgaatgggcagtggagtcgcataataatggacagttggaacaaatcgtagatcccaatcttgcagataaaataagaccagagtccctcaggaagtttggagaaacagcggtaaaatgcttagctttgtctagtgaagataggccatcaatgggtgatgtgttgtggaaactggagtatgcacttcgtctccaagagtctgttatttaagatatttttgtttttctgagttttatatagaaaggtaaactttgaaaacttgaattgctatacctgtggatccttctttcattttattaggtgcgtccggctgttacacatattgtatatggttcttattaagttgttcagacattttcttattgtaaagaggcaaaaagggagtttgctgcttttgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="128264" stop="129456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128564" g_stop="129160" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E347404" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128564" e_stop="129160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGACAAGGCCTCAGCTTTATCAAACCACAGACGTGAAAGGAACTTTCGGCTACATTGACCCTGAATATTTTATAAAGGGACGACTTACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTTGAAGTTCTTTGTGCTAGGTCTGCCATGGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAGAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTTCATTTTATTAGGTGCGTCCGGCTGTTACACATATTGTATATGGTTCTTATTAAGTTGTTCAGACATTTTCTTATTGTAAAGAGGCAAAAAGGAAGTTTGCTGCTTTGACATAGTCA</genome_strand>
        <mrna_strand>TCCAAGACAAGGCCTCAGCTTTATCAAACCACAGACGTGAAAGGAACTTTCGGCTACATTGACCCTGAATATTTTATAAAGGGACGACTTACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTTGAAGTTCTTTGTGCTAGGTCTGCCATGGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAGAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTTCATTTTATTAGGTGCGTCCGGCTGTTACACATATTGTATATGGTTCTTATTAAGTTGTTCAGACATTTTCTTATTGTAAAGAGGCAAAAAGGGAGTTTGCTGCTTTTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398641" ref_strand="+" ref_description="SGN-E398641 [TUS-44-O2](-)">
      <seq>gcacagtagtgaaaggaactctcggttacattgaccctgaatatcttataaagggccgactcactgaaaaatctgatgtttattctttcggtgttgttttattcgaagttctttgtgctaggtctgccatagttcaatctcttccaagggagatggttaatttagctgaatgggcagtggagtcgcataataatggacagttggaacaaatcgtagatcccaatcttgcagataaaataagaccagagtccctcaggaagtttggagatacagcggtaaaatgcttagctttgtctagtgaagataggccatcaatgggtgatgtgttgtggaaactggagtatgcacttcgtctccaagagtctgttatttaagatatttttgttgtggtgagttttatatagaaaaaggtaaactttgaaaacttgaattgctatacctgtggatccgtcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="128293" stop="129341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128592" g_stop="129044" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E398641" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128592" e_stop="129044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAGACGTGAAAGGAACTTTCGGCTACATTGACCCTGAATATTTTATAAAGGGACGACTTACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTTGAAGTTCTTTGTGCTAGGTCTGCCATGGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAG--AAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTT</genome_strand>
        <mrna_strand>GCACAGTAGTGAAAGGAACTCTCGGTTACATTGACCCTGAATATCTTATAAAGGGCCGACTCACTGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGTCTGCCATAGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGATACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTGTGGTGAGTTTTATATAGAAAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCGTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390650" ref_strand="+" ref_description="SGN-E390650 [TUS-47-O6](-)">
      <seq>gaatattttataaagggacgactcactgaaaaatatgaagtttattcgttcggtgttgttttattcgaagtgcgtttgtattaggtaagccataggtcaatctcttccaagggagagggttaatttagctgaaagaacagcggagtcgcataataatggacagttggaacaaatcgtagatcccaatcttgcagataaaataagaccagagtccctcaggaagtttggagatacagcggtaaaatgcttagctttgtctagtgaagataggccatcaatgggtgatgtgttgtggaaactggagtatgcacttcgtctccaagagtctgttatttaagatatttttgtttttctgagttttatatagaaaaaggtaaactttgaaaacttgaattgctatacctgtggatccgtcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="128330" stop="129341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128630" g_stop="129044" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E390650" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128630" e_stop="129044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTTTATAAAGGGACGACTTACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTTGAAGTTC-TTTGTGCTAGGTCTGCCATGGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAG--AAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTT</genome_strand>
        <mrna_strand>GAATATTTTATAAAGGGACGACTCACTGAAAAATATGAAGTTTATTCGTTCGGTGTTGTTTTATTCGAAGTGCGTTTGTATTAGGTAAGCCATAGGTCAATCTCTTCCAAGGGAGAGGGTTAATTTAGCTGAAAGAACAGCGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGATACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAGAAAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCGTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247170" ref_strand="+" ref_description="SGN-E247170 [cLEF-46-N9]">
      <seq>tcttccaagggagatggttaatttagctgaatgggcagtggagtcgcataataatggacagttggaacaaatcgtagatcccaatcttgcagataaaataagaccagagtccctcaagaagtttggagaaacagcggtaaaatgcttagctttgtctagtgaagataggccatcaatgggtgatgtgttgtggaaactggagtatgcacttcgtctccaagagtctgttatttaagatatttttgtttttctgagttttatatagaaaggtaaactttgaaaacttgaattgctatacctgtggatccttctttcattttattaggtgcgtccggctgttacacatattgtatatggttcttattaagttgttcagacattttcttattgtaaagaggcaaaaaggaagtttgctgctttgacatagtcatctaaaactatatacattcaactttcagaatggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="128431" stop="129496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128731" g_stop="129196" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E247170" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128731" e_stop="129196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAGAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTTCATTTTATTAGGTGCGTCCGGCTGTTACACATATTGTATATGGTTCTTATTAAGTTGTTCAGACATTTTCTTATTGTAAAGAGGCAAAAAGGAAGTTTGCTGCTTTGACATAGTCATCTAAAACTATATACATTCAACTTTCAGAATGGAAC</genome_strand>
        <mrna_strand>TCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAAGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAGAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTTCATTTTATTAGGTGCGTCCGGCTGTTACACATATTGTATATGGTTCTTATTAAGTTGTTCAGACATTTTCTTATTGTAAAGAGGCAAAAAGGAAGTTTGCTGCTTTGACATAGTCATCTAAAACTATATACATTCAACTTTCAGAATGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390886" ref_strand="+" ref_description="SGN-E390886 [TUS-47-O10](-)">
      <seq>gggagatgcataatttagatgaatgggcaggggagtcgcataataacggacagttggaacaaatcgtagatcccaatcttgcagataaaataagaccagagtccctcaggaagtttggagatacagcggtaaaatgcttagctttgtctagtgaagataggccatcaatgggtgatgtgttgtggaaactggagtatgcacttcgtctccaagagtctgttatataagatatttttgtttttctgagttttatatagaaaaaggtaaactctgaaaacttgaactgctatacctgaggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="128439" stop="129298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128739" g_stop="129037" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E390886" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128739" e_stop="129037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAG--AAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATC</genome_strand>
        <mrna_strand>GGGAGATGCATAATTTAGATGAATGGGCAGGGGAGTCGCATAATAACGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGATACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATATAAGATATTTTTGTTTTTCTGAGTTTTATATAGAAAAAGGTAAACTCTGAAAACTTGAACTGCTATACCTGAGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391237" ref_strand="+" ref_description="SGN-E391237 [TUS-48-N1](-)">
      <seq>gagtcgcataataatggacagttggaacaaatcgtagatcccaatcttgcagataaaataagaccagagtccctcaggaagtttggagatacagcggtaaaatgcttagctttgtctagtgaagataggccatcaatgggtgatgtgttgtggaaactggagtatgcacttcgtctccaagagtctgttatttaagatatttttgtttttctgagttttatatagaaaaaggtaaactttgaaaacttgaattgctatacctgtggatccgtcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="128471" stop="129341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128771" g_stop="129044" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E391237" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128771" e_stop="129044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAG--AAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTT</genome_strand>
        <mrna_strand>GAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGATACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAGAAAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCGTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396730" ref_strand="+" ref_description="SGN-E396730 [TUS-43-N1](-)">
      <seq>ataataatggacagtgggaacaaatcgtagatcccaatcttgcagataaaataagaccagagtccctcaggaagtttggagatacagcggtaaaatgcttagctttgtctagtgaagataggccatcaatgggtgatgtgttgtggaaactggagtatgcacttcgtctccaagagtctgttatttaagatatttttgtatttctgagttttatatagaaaaaggtaaactttgaaaacttgaattgctatacctgtggatccgtcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="128478" stop="129341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128778" g_stop="129044" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E396730" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128778" e_stop="129044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAG--AAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTT</genome_strand>
        <mrna_strand>ATAATAATGGACAGTGGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGATACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTATTTCTGAGTTTTATATAGAAAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCGTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391248" ref_strand="+" ref_description="SGN-E391248 [TUS-48-P1](-)">
      <seq>accagagtccctcaggaagtttggagatacagcggtaaaatgcttagctttgtctagtgaagataggccatcaatgggtgatgtcccgtggaaactggagtatgcacttcgtctccaagagtctgttatttaagatatttttgtttttcccagttttatatagaaaaaggtaaactttgaaaacttgaattgctatacctgtggatccgtcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="128533" stop="129341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128833" g_stop="129044" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E391248" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128833" e_stop="129044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAG--AAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTT</genome_strand>
        <mrna_strand>ACCAGAGTCCCTCAGGAAGTTTGGAGATACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTCCCGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCCCAGTTTTATATAGAAAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCGTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253711" ref_strand="+" ref_description="SGN-E253711 [cLEG-32-E21]">
      <seq>ggagaaacagcggtaaaatgcttatctttgtctagtgaagataggccatcaatgggtgatgtgttgtggaaactggagtatgcacttcgtctccaagagtctgttatttaagatattcttgtttttctgagttttatatagaaaggtaaactttgaaaacttgaattgctatacctgtggatccttctttcattttattaggtgcgtccggctgttacacatattgtatatggttcttattaagttgttcagacattttcttattgtaaagaggccaaaaggaagtttgctgctttgacatagtcatctaaaactatatacattcaactttcagaatggaactataaaagtttgtggagcaattctaaatgttactcaacctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="128555" stop="129539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128855" g_stop="129239" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E253711" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128855" e_stop="129239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAGAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTTCATTTTATTAGGTGCGTCCGGCTGTTACACATATTGTATATGGTTCTTATTAAGTTGTTCAGACATTTTCTTATTGTAAAGAGGCAAAAAGGAAGTTTGCTGCTTTGACATAGTCATCTAAAACTATATACATTCAACTTTCAGAATGGAACTATAAAAGTTTGTGGAGCAATTCTAAATGTTACTCAACCTGTT</genome_strand>
        <mrna_strand>GGAGAAACAGCGGTAAAATGCTTATCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTCTTGTTTTTCTGAGTTTTATATAGAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTTCATTTTATTAGGTGCGTCCGGCTGTTACACATATTGTATATGGTTCTTATTAAGTTGTTCAGACATTTTCTTATTGTAAAGAGGCCAAAAGGAAGTTTGCTGCTTTGACATAGTCATCTAAAACTATATACATTCAACTTTCAGAATGGAACTATAAAAGTTTGTGGAGCAATTCTAAATGTTACTCAACCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271284" ref_strand="+" ref_description="SGN-E271284 [cLEM-5-J3]">
      <seq>aaaacttgaattgctatacctgtggatccttctttcattttattaggtgcgtccggctgttacacatattgtatatggttcttattaagttgttcagacattttcttattgtaaagaggcaaaaaggaagtttgctgctttgacatagtcatctaaaactatatacattcaactttcagaatggaactataaaagtttgtggagcaattctaaatgttactcaacctgttcacaaaatgactattgtagagcaataatggttataatatataaccattattgagtaatatttttgtagtagtattgcccaagtccattagcggaaaggtaattttcttttcggttctctcttccacaatagctatcaatctctctgtcttctcgctaaatttcctcagttgtggtataatcagaggttcctcaagccttctgtttttgtatacatatatttgtgattttcatctatcatgcttactgttaggagttcatattgcttgatgagaattttgtggcaaaaattactgattttggacgattcaagaaagcttgatcaaacccatgttaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="128710" stop="129877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129010" g_stop="129577" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E271284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129010" e_stop="129577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTGAATTGCTATACCTGTGGATCCTTCTTTCATTTTATTAGGTGCGTCCGGCTGTTACACATATTGTATATGGTTCTTATTAAGTTGTTCAGACATTTTCTTATTGTAAAGAGGCAAAAAGGAAGTTTGCTGCTTTGACATAGTCATCTAAAACTATATACATTCAACTTTCAGAATGGAACTATAAAAGTTTGTGGAGCAATTCTAAATGTTACTCAACCTGTTCACAAAATGACTATTGTAGAGCAATAATGGTTATAATATATAACCATTATTGAGTAATATTTTTGTAGTAGTATTGCCCAAGTCCATTAGCGGAAAGGTAATTTTCTTTTCGGTTCTCTCTTCCACAATAGCTATCAATCTCTCTGTCTTCTCGCTAAATTTCCTCAGTTGTGGTATAATCAGAGGTTCCTCAAGCCTTCTGTTTTTGTATACATATATTTGTGATTTTCATCTATCATGCTTACTGTTAGGAGTTCATATTGCTTGATGAGAATTTTGTGGCAAAAATTACTGATTTTGGACGATTCAAGAAAGCTTGATCAAACCCATGTTACCAC</genome_strand>
        <mrna_strand>AAAACTTGAATTGCTATACCTGTGGATCCTTCTTTCATTTTATTAGGTGCGTCCGGCTGTTACACATATTGTATATGGTTCTTATTAAGTTGTTCAGACATTTTCTTATTGTAAAGAGGCAAAAAGGAAGTTTGCTGCTTTGACATAGTCATCTAAAACTATATACATTCAACTTTCAGAATGGAACTATAAAAGTTTGTGGAGCAATTCTAAATGTTACTCAACCTGTTCACAAAATGACTATTGTAGAGCAATAATGGTTATAATATATAACCATTATTGAGTAATATTTTTGTAGTAGTATTGCCCAAGTCCATTAGCGGAAAGGTAATTTTCTTTTCGGTTCTCTCTTCCACAATAGCTATCAATCTCTCTGTCTTCTCGCTAAATTTCCTCAGTTGTGGTATAATCAGAGGTTCCTCAAGCCTTCTGTTTTTGTATACATATATTTGTGATTTTCATCTATCATGCTTACTGTTAGGAGTTCATATTGCTTGATGAGAATTTTGTGGCAAAAATTACTGATTTTGGACGATTCAAGAAAGCTTGATCAAACCCATGTTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252617" ref_strand="+" ref_description="SGN-E252617 [cLEG-20-F23]">
      <seq>tttcctcagttgtggtataatcagaggttcctcaagccttctgtttttgtatacatatatttgtgattttcatctatcatgcttactgttaggagttcatattgcttgatgagaattttgtggcaaaaattactgattttggacgattcaagaaagcttgatcaaacccatgttaccacaatagaaaagggaacttttggctatcttgaccctgaatattatcaaactagtctgctgacagaaaaatctgatgtttattctttcggcgttgttttattcgaagttctttgtgctaggcctgccataggtcgttcacatatgatcagcttagctgaatgggccgtagagacgcagaagatgggacagttggaacaaattgtagatcccactattgtggccaaaataagaccacagtccctcaggatgtttggagaaacggcaatgaaatgcttagcttcatctagtgaaaataggccatcactgggtgatgtgctgaggaaactggagtatgcacttcatctcccagagcctatcattcaacataatcctgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="129099" stop="132451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129399" g_stop="129694" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129695" i_stop="131893" i_length="2199">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.797" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131894" g_stop="132151" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="554" r_length="258" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E252617" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129399" e_stop="129694"/>
          <exon e_start="131894" e_stop="132151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCAGTTGTGGTATAATCAGAGGTTCCTCAAGCCTTCTGTTTTTGTATACATATATTTGTGATTTTCATCTATCATGCTTACTGTTAGGAGTTCATATTGCTTGATGAGAATTTTGTGGCAAAAATTACTGATTTTGGACGATTCAAGAAAGCTTGATCAAACCCATGTTACCACAATAGAAAAGGGAACTTTTGGTTATCTTGACCCTGAATATTATCAAACTAGTCTGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTAGAAGTTCTTTGTGCTAGGCCTGCGCTGGATTCACCTCGTTCGAGGGAGATGGTCAGCTTAGTTAAATGGGCAAAGGAGTGTCAGACGAACGGACAGTCAAAACGAATTATAGATCCCAATCTTGTTGGCAAAATAAGACCAGATTCCCTCGGGAGGTTTGGAGAAACAGCGGTGAAATGCTTAGCTGAAACTGGCGTAGACTGGCCATCAATGGGTGAGGTGCTGCAGAAACTGGACTATGCACTTCATCTCTAAGAGCCTGTCATTCAAGAAAACACTGCCATCCCTATTCGCGAGCAAATCAATGATTTCAGTCATGTTGATGACACTTCCTCTGCTGCTTCGGTCAAAATTGGGCTGATCTCTAGTATGAATGGTACATACCTTCCTTTAGTATTGTTTACATATTTTTTTTTTGTTTTTTAAAGAGTCTTCTGAGTTTTATATAGAATGTTTCACATTGAAAAACTTGAATTACTCTACCTGTAGATCCTGCTTTCATTTTATTAGGTGTGTCACATGTTGTATATGGTTTCTATTAAGTTCTTCATACATAACAAATCATTACATTAATGTCATGGTAGCGAAAACACTTTAGAAAACATGGAACAATTTTTAGGCTCTGGAAAGTTTGCATATGGTAATACACTCTTTTCTTATTGTAAAGAGCCAAAAGGAAGTTTGCATTACTTCTTCTGAGACTGCTCATGAGACTCTTCTTTATTTCAATAAAAAAAAATAGTCAAAACACATTTTGATTTTGCATCATGAAAATGAGTAAATAGTACTCCCTCTGTCTCCATTTACTTGTCAAATTTTTACTTTGCAAGCCTATTAACAAAACAATGATTGATATAGTGAGTTTACCATTTTATCATTATTAATTGATAGGATTTCAAACATATCTACACGCTACATTTTTCAAAGACATGAATTGAATGTTAATAAATTGAGTGTATAATAGAAAAATAAAAATTGTGTTCTTTCTTGATTTGTCAAAAATGACAAATAAAAGGAAAAATTCAAATTAGAAAATATTTGATAAATAAATAGGAACGGAAAGAGTACACAACAAGCAATCATTCTTTTGCACACATAAATTATTAAGTACTATTACTTCTAGAGAAAAAGGCAGTTTCATATAATAATGGAGAAACATAAACAAAAGTAAAAAAAAATAATAGTTTCATATATAAGTTAGATACAGATATATACATTATTAAATTTAGAGAGGTCTAAACTATCAAGTAGTAATCAACAAGTAAATGTCCTAATCAAGACTAAAAAAAGTTTGTGTTTTCTTTATATAGAATTTGTGATTTTTCATCAATTATATACTTGGAATTGTTCTACATTCCTCAATCAGGGTTGACTTTGTTCTTTTCTTATCTATGTTTTCAATTTTGAAATAGTGACCCCTTTCAATCATGTAACTTTTACTTGTAGCGTTCAGATTTTGCTCAAGAAAACAGCCGGGAGAAGTTCAATTAATGGTTGCACTCCATGGGAACCAACTATTCCAAGCCAACAACTTCCATAAATGATGCTTCCAATTTGAGTAATCGCGTTCCTTTTGAAAGTTTTCGAGTTCCTTTTGTAGATTTGCAGGAAGCAACTAATAACTTTGATGACAAGTTTCTGATTGGAGTGGGTATATTTGGTAAGGTTTACAGGGGTGTTTTGCGTGATGGTACAAAGGTGGCCCTGAAAAGACGTAAGCCTGAGTCTCCACAAGGTATTGAAGAGTTCCGAACAGAAATTGAGATACTCTCACACTGCAGCCATCCACATCTGGTTTCACTGATAGGATACTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAGTAAACGTTTGTATGGATCAGATCTATGTCTTCCCACTATGAGCTGGGAGCAGAGGCTGGAGATATGCATCGGGGCAGCCAGAGGTCTTCACTACCTTCATAACAGTGCAGTTATACATCGTGATGTCAAGTCTACAAACATATTGCTTGATGAGAATTTTGTGGCAAAAATTACTGATTTTGGAATATCCAAGACAACGCCTGAGTTTGATCAAACCCATCTTAGCACAATGGTGCAAGGAAGTATAGGCTACATTGACCCTGAATATTTTATAAGGGGACAACTGACAAAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGCCTGCCATAGGTCGTTCACATATGATCAGTTTAGCTGAATGGGCAGTAGAGACGCAGAAGATGGGACAGTTGGAACAAATTGTAGATCCCACTATTGTGGCCAAAATAAGACCAGAGTCCCTCAGGATGTTTGGAGAAACGGCAGTGAAATGCTTAGCTTCATCTAGTGAAAATAGGCCATCAATGGGTGATGTGCTGTGGAAACTGGAGTATGCACTTCATCTCCAAGAGCCTATCATTCAAGATAATCCTGAATG</genome_strand>
        <mrna_strand>TTTCCTCAGTTGTGGTATAATCAGAGGTTCCTCAAGCCTTCTGTTTTTGTATACATATATTTGTGATTTTCATCTATCATGCTTACTGTTAGGAGTTCATATTGCTTGATGAGAATTTTGTGGCAAAAATTACTGATTTTGGACGATTCAAGAAAGCTTGATCAAACCCATGTTACCACAATAGAAAAGGGAACTTTTGGCTATCTTGACCCTGAATATTATCAAACTAGTCTGCTGACAGAAAAATCTGATGTTTATTCTTTCGGCGTTGTTTTATTCGAAGTTCTTTGTGCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGCCATAGGTCGTTCACATATGATCAGCTTAGCTGAATGGGCCGTAGAGACGCAGAAGATGGGACAGTTGGAACAAATTGTAGATCCCACTATTGTGGCCAAAATAAGACCACAGTCCCTCAGGATGTTTGGAGAAACGGCAATGAAATGCTTAGCTTCATCTAGTGAAAATAGGCCATCACTGGGTGATGTGCTGAGGAAACTGGAGTATGCACTTCATCTCCCAGAGCCTATCATTCAACATAATCCTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249721" ref_strand="+" ref_description="SGN-E249721 [cLEF-56-N16]">
      <seq>tttggacgattcaagaaagcttgatcaaacccatgttaccacaatagaaaagggaacttttggttatcttgaccctgaatattatcaaactagtctgctgacagaaaaatctgatgtttattctttcggtgttgttttattagaagttctttgtgctaggcctgcgctggattcacctcgttcgagggagatggtcagcttagttaaatgggcaaaggagtgtcagacgaacggacagtcaaaacgaattatagatcccaatcttgttggcaaaataagaccagattccctcgggaggtttggagaaacagcggtgaaatgcttagctgaaactggcgtagactggccatcaatgggtgaggtgctgcagaaactggactatgcacttcatctctaagagcctgtcattcaagaaaacactgccatccctattcgcgagcaaatcaatgatttcagtcatgttgatgacacttcctctgctgcttcggtcaaaattgggctgatctctagtatgaatgcgttcagattttgctcaagaaaacagccgggagaagttcaattaatggttgcactccatgggaaccaactattccaagccaacaacttccataaatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="129236" stop="131524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129536" g_stop="130053" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130054" i_stop="131123" i_length="1070">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131124" g_stop="131224" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="619" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E249721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129536" e_stop="130053"/>
          <exon e_start="131124" e_stop="131224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGACGATTCAAGAAAGCTTGATCAAACCCATGTTACCACAATAGAAAAGGGAACTTTTGGTTATCTTGACCCTGAATATTATCAAACTAGTCTGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTAGAAGTTCTTTGTGCTAGGCCTGCGCTGGATTCACCTCGTTCGAGGGAGATGGTCAGCTTAGTTAAATGGGCAAAGGAGTGTCAGACGAACGGACAGTCAAAACGAATTATAGATCCCAATCTTGTTGGCAAAATAAGACCAGATTCCCTCGGGAGGTTTGGAGAAACAGCGGTGAAATGCTTAGCTGAAACTGGCGTAGACTGGCCATCAATGGGTGAGGTGCTGCAGAAACTGGACTATGCACTTCATCTCTAAGAGCCTGTCATTCAAGAAAACACTGCCATCCCTATTCGCGAGCAAATCAATGATTTCAGTCATGTTGATGACACTTCCTCTGCTGCTTCGGTCAAAATTGGGCTGATCTCTAGTATGAATGGTACATACCTTCCTTTAGTATTGTTTACATATTTTTTTTTTGTTTTTTAAAGAGTCTTCTGAGTTTTATATAGAATGTTTCACATTGAAAAACTTGAATTACTCTACCTGTAGATCCTGCTTTCATTTTATTAGGTGTGTCACATGTTGTATATGGTTTCTATTAAGTTCTTCATACATAACAAATCATTACATTAATGTCATGGTAGCGAAAACACTTTAGAAAACATGGAACAATTTTTAGGCTCTGGAAAGTTTGCATATGGTAATACACTCTTTTCTTATTGTAAAGAGCCAAAAGGAAGTTTGCATTACTTCTTCTGAGACTGCTCATGAGACTCTTCTTTATTTCAATAAAAAAAAATAGTCAAAACACATTTTGATTTTGCATCATGAAAATGAGTAAATAGTACTCCCTCTGTCTCCATTTACTTGTCAAATTTTTACTTTGCAAGCCTATTAACAAAACAATGATTGATATAGTGAGTTTACCATTTTATCATTATTAATTGATAGGATTTCAAACATATCTACACGCTACATTTTTCAAAGACATGAATTGAATGTTAATAAATTGAGTGTATAATAGAAAAATAAAAATTGTGTTCTTTCTTGATTTGTCAAAAATGACAAATAAAAGGAAAAATTCAAATTAGAAAATATTTGATAAATAAATAGGAACGGAAAGAGTACACAACAAGCAATCATTCTTTTGCACACATAAATTATTAAGTACTATTACTTCTAGAGAAAAAGGCAGTTTCATATAATAATGGAGAAACATAAACAAAAGTAAAAAAAAATAATAGTTTCATATATAAGTTAGATACAGATATATACATTATTAAATTTAGAGAGGTCTAAACTATCAAGTAGTAATCAACAAGTAAATGTCCTAATCAAGACTAAAAAAAGTTTGTGTTTTCTTTATATAGAATTTGTGATTTTTCATCAATTATATACTTGGAATTGTTCTACATTCCTCAATCAGGGTTGACTTTGTTCTTTTCTTATCTATGTTTTCAATTTTGAAATAGTGACCCCTTTCAATCATGTAACTTTTACTTGTAGCGTTCAGATTTTGCTCAAGAAAACAGCCGGGAGAAGTTCAATTAATGGTTGCACTCCATGGGAACCAACTATTCCAAGCCAACAACTTCCATAAATGATGC</genome_strand>
        <mrna_strand>TTTGGACGATTCAAGAAAGCTTGATCAAACCCATGTTACCACAATAGAAAAGGGAACTTTTGGTTATCTTGACCCTGAATATTATCAAACTAGTCTGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTAGAAGTTCTTTGTGCTAGGCCTGCGCTGGATTCACCTCGTTCGAGGGAGATGGTCAGCTTAGTTAAATGGGCAAAGGAGTGTCAGACGAACGGACAGTCAAAACGAATTATAGATCCCAATCTTGTTGGCAAAATAAGACCAGATTCCCTCGGGAGGTTTGGAGAAACAGCGGTGAAATGCTTAGCTGAAACTGGCGTAGACTGGCCATCAATGGGTGAGGTGCTGCAGAAACTGGACTATGCACTTCATCTCTAAGAGCCTGTCATTCAAGAAAACACTGCCATCCCTATTCGCGAGCAAATCAATGATTTCAGTCATGTTGATGACACTTCCTCTGCTGCTTCGGTCAAAATTGGGCTGATCTCTAGTATGAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCAGATTTTGCTCAAGAAAACAGCCGGGAGAAGTTCAATTAATGGTTGCACTCCATGGGAACCAACTATTCCAAGCCAACAACTTCCATAAATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228193" ref_strand="+" ref_description="SGN-E228193 [cLED-2-O9]">
      <seq>aaaggagtgtctgacgaacggacagtcaaaacgaattatagatcccaatcttgttggccaaataagaccagattccctcgggaggtttggagaaacagcggtgaaatgcttagctgatactggcgttgactggccatcaatgggtgaggtgctgcctaaactggactatgcacttcatctctaatagcctgtcattcaagaaaacactgccatccctatttgcgagcaaatcaaagatttcagtcatgttgatgacacttcctctgctgcttccgtcaaaattgggctgatctctaatatgaatgcgttcagattttgctcaagaaaacagccgggagaagttcaattaatgggtgcactccatgggaaccaactattgcaagccaacaacttgcatgaatgatgcttccaatttgagtaatcgcgtccctttcgaaagtgttcgagttccttttgtagatttgcaggaagcaactaataactgtgatgacaagttactgattggagtgggtttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="129449" stop="131636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129749" g_stop="130053" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130054" i_stop="131123" i_length="1070">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131124" g_stop="131336" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="518" r_length="213" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E228193" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129749" e_stop="130053"/>
          <exon e_start="131124" e_stop="131336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAGTGTCAGACGAACGGACAGTCAAAACGAATTATAGATCCCAATCTTGTTGGCAAAATAAGACCAGATTCCCTCGGGAGGTTTGGAGAAACAGCGGTGAAATGCTTAGCTGAAACTGGCGTAGACTGGCCATCAATGGGTGAGGTGCTGCAGAAACTGGACTATGCACTTCATCTCTAAGAGCCTGTCATTCAAGAAAACACTGCCATCCCTATTCGCGAGCAAATCAATGATTTCAGTCATGTTGATGACACTTCCTCTGCTGCTTCGGTCAAAATTGGGCTGATCTCTAGTATGAATGGTACATACCTTCCTTTAGTATTGTTTACATATTTTTTTTTTGTTTTTTAAAGAGTCTTCTGAGTTTTATATAGAATGTTTCACATTGAAAAACTTGAATTACTCTACCTGTAGATCCTGCTTTCATTTTATTAGGTGTGTCACATGTTGTATATGGTTTCTATTAAGTTCTTCATACATAACAAATCATTACATTAATGTCATGGTAGCGAAAACACTTTAGAAAACATGGAACAATTTTTAGGCTCTGGAAAGTTTGCATATGGTAATACACTCTTTTCTTATTGTAAAGAGCCAAAAGGAAGTTTGCATTACTTCTTCTGAGACTGCTCATGAGACTCTTCTTTATTTCAATAAAAAAAAATAGTCAAAACACATTTTGATTTTGCATCATGAAAATGAGTAAATAGTACTCCCTCTGTCTCCATTTACTTGTCAAATTTTTACTTTGCAAGCCTATTAACAAAACAATGATTGATATAGTGAGTTTACCATTTTATCATTATTAATTGATAGGATTTCAAACATATCTACACGCTACATTTTTCAAAGACATGAATTGAATGTTAATAAATTGAGTGTATAATAGAAAAATAAAAATTGTGTTCTTTCTTGATTTGTCAAAAATGACAAATAAAAGGAAAAATTCAAATTAGAAAATATTTGATAAATAAATAGGAACGGAAAGAGTACACAACAAGCAATCATTCTTTTGCACACATAAATTATTAAGTACTATTACTTCTAGAGAAAAAGGCAGTTTCATATAATAATGGAGAAACATAAACAAAAGTAAAAAAAAATAATAGTTTCATATATAAGTTAGATACAGATATATACATTATTAAATTTAGAGAGGTCTAAACTATCAAGTAGTAATCAACAAGTAAATGTCCTAATCAAGACTAAAAAAAGTTTGTGTTTTCTTTATATAGAATTTGTGATTTTTCATCAATTATATACTTGGAATTGTTCTACATTCCTCAATCAGGGTTGACTTTGTTCTTTTCTTATCTATGTTTTCAATTTTGAAATAGTGACCCCTTTCAATCATGTAACTTTTACTTGTAGCGTTCAGATTTTGCTCAAGAAAACAGCCGGGAGAAGTTCAATTAATGGTTGCACTCCATGGGAACCAACTATTCCAAGCCAACAACTTCCATAAATGATGCTTCCAATTTGAGTAATCGCGTTCCTTTTGAAAGTTTTCGAGTTCCTTTTGTAGATTTGCAGGAAGCAACTAATAACTTTGATGACAAGTTTCTGATTGGAGTGGGTATATTT</genome_strand>
        <mrna_strand>AAAGGAGTGTCTGACGAACGGACAGTCAAAACGAATTATAGATCCCAATCTTGTTGGCCAAATAAGACCAGATTCCCTCGGGAGGTTTGGAGAAACAGCGGTGAAATGCTTAGCTGATACTGGCGTTGACTGGCCATCAATGGGTGAGGTGCTGCCTAAACTGGACTATGCACTTCATCTCTAATAGCCTGTCATTCAAGAAAACACTGCCATCCCTATTTGCGAGCAAATCAAAGATTTCAGTCATGTTGATGACACTTCCTCTGCTGCTTCCGTCAAAATTGGGCTGATCTCTAATATGAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCAGATTTTGCTCAAGAAAACAGCCGGGAGAAGTTCAATTAATGGGTGCACTCCATGGGAACCAACTATTGCAAGCCAACAACTTGCATGAATGATGCTTCCAATTTGAGTAATCGCGTCCCTTTCGAAAGTGTTCGAGTTCCTTTTGTAGATTTGCAGGAAGCAACTAATAACTGTGATGACAAGTTACTGATTGGAGTGGGTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="140738" stop="139745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140438" g_stop="140045" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140438" e_stop="140045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAG-TGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCAGCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCATAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAATAGAAAGAAGTCCAACGGGCAGAAGTCAGAATAGGCCAAGAAGAAATTCAAAGGCAACTATTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="140734" stop="139773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140434" g_stop="140073" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140434" e_stop="140073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAG-TGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCAGCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCATAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAATAGAAAGAAGTCCAACGGGCAGAAGTCAGAATAGGCCAAGAAGAAATTCAAAGGCAACTATTATAATT</genome_strand>
        <mrna_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538064" ref_strand="+" ref_description="SGN-E538064 [TUS-56-P20]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaatataacggaatttaaaacgggtcacgcgcgcggatccgagtcgggtcgggttaactaaaaagttgaaaacaattcggttaatttctgttatcaactgattaattgaaaataatttttggccatttaannttattaataaataattaaaataatttgtccaaaaaatatctctcgatcatttgccaagtcgaagccgagcgagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="140590" stop="142029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140888" g_stop="141727" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E538064" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140888" e_stop="141727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTT-AATAATTTCCTTAAGATTGTTTCCAATCTGTGTT-ATAAAATCAGAAATTACTGGTTCTAATAAATCATTCAGAAACACAAAGTAACTGAGATTTTTTTTATAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTTAATTTGTAAAAACGTACCAGAATCTGGAATACTCTTATTGAAAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCAAGGTTTGATTTGGAATACAACCTCCCTGGGTAAAATGATTTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAATATATG-TTTTTAAGAAAAAGGAAGATCAGAAAAAAAAAATTCG-TAGGAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAGAATATATTCTAAAAGGTTGCAACCCTTTCAGAATTAACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGATATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTCATGGCGGGAAATTTTGAATATAACGGAATTTAAAATGGGTCACTCGAGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACATTTCGGTTAAATTCTGTTATCAACTAATTTATTGAAAATAATTTTTGGCCATTTAAAATTAATTAATAAATAATTAAAATAAATTTTGTCCAAAAAATTATCTCTCG</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGA---TTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGT-AAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAG------AAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAG---TGGCGGGAATTTTTAAATATAACGGAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACAATTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAANNTT-ATTAATAAATAATTAAAAT-AA-TTTGTCCAAAAAA-TATCTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538071" ref_strand="+" ref_description="SGN-E538071 [TUS-56-P24]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgagggttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgagacaaccattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="140590" stop="141766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140888" g_stop="141466" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E538071" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140888" e_stop="141466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTT-AATAATTTCCTTAAGATTGTTTCCAATCTGTGTT-ATAAAATCAGAAATTACTGGTTCTAATAAATCATTCAGAAACACAAAGTAACTGAGATTTTTTTTATAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTTAATTTGTAAAAACGTACCAGAATCTGGAATACTCTTATTGAAAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCAAGGTTTGATTTGGAATACAACCTCCCTGGGTAAAATGATTTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAATATATG-TTTTTAAGAAAAAGGAAGATCAGAAAAAAAAAATTCG-TAGGAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAGAATATATTCTAAAAGGTTGCAACCCTTTCAGAATTAACACGACCATTAA</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGA---TTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGT-AAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGGTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAG------AAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGAGACAACCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268499" ref_strand="+" ref_description="SGN-E268499 [cLEI-13-K15]">
      <seq>ttataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="140590" stop="141598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140889" g_stop="141298" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E268499" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140889" e_stop="141298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTT-AATAATTTCCTTAAGATTGTTTCCAATCTGTGTT-ATAAAATCAGAAATTACTGGTTCTAATAAATCATTCAGAAACACAAAGTAACTGAGATTTTTTTTATAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTTAATTTGTAAAAACGTACCAGAATCTGGAATACTCTTATTGAAAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCAAGGTTTGATTTGGAATACAACCTCCCTGGGTAAAATGATTTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</genome_strand>
        <mrna_strand>TTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGA---TTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGT-AAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267255" ref_strand="+" ref_description="SGN-E267255 [cLEI-4-N5]">
      <seq>aagactttacagtctttcttcttcttctccaaatcttcatatgttttcaactttgctacattgaagtttgccctgtgagtttcctattttgctgtagaagtttgcgctgtcaaatactagtagattccattatctattgatgggaagcaagtattccaaggcaacaaattccataaatgatgcttctaacttgagttatggcattccttttgaaaattatcgagttccttttgtagatttggaggaagcaactaacaactttgatgacaagtttttcattggagagggtggatttgggaaggtttacaggggtgttttgcgtgatggaacaaaggtcgccctgaaaaagcataaacgtgagtcctcacaaggtattgaagagttcgaaacagaaattgagattctctcattttgcagccatccgcatctggtttcattgataggattctgtgatgaaagaaatgagatgattctaatttatgactacatggagaatgggaacctcaagagccatttgtatggctcagatctacccactatgagcatgagctgggagcagaggctggagatatgcataggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="144306" stop="145485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144606" g_stop="145185" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E267255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144606" e_stop="145185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACTTTACAGTCTTTCTTCTTCTTCTCCAAATCTTCATATGTTTTCAACTTTGCTACATTGAAGTTTGCCCTGTGAGTTTCCTATTTTGCTGTAGAAGTTTGCGCTGTCAAATACTAGTAGATTCCATTATCTATTGATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGG</genome_strand>
        <mrna_strand>AAGACTTTACAGTCTTTCTTCTTCTTCTCCAAATCTTCATATGTTTTCAACTTTGCTACATTGAAGTTTGCCCTGTGAGTTTCCTATTTTGCTGTAGAAGTTTGCGCTGTCAAATACTAGTAGATTCCATTATCTATTGATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267055" ref_strand="+" ref_description="SGN-E267055 [cLEI-4-O5]">
      <seq>aagactttacagtctttcttcttcttctccaaatcttcatatgttttcaactttgctacattgaagtttgccctgtgagtttcctattttgctgtagaagtttgcgctgtcaaatactagtagattccattatctattgatgggaagcaagtattccaaggcaacaaattccataaatgatgcttctaacttgagttatggcattccttttgaaaattatcgagttccttttgtagatttggaggaagcaactaacaactttgatgacaagtttttcattggagagggtggatttgggaaggtttacaggggtgttttgcgtgatggaacaaaggtcgccctgaaaaagcataaacgtgagtcctcacaaggtattgaagagttcgaaacagaaattgagattctctcattttgcagccatccgcatctggtttcattgataggattctgtgatgaaagaaatgagatgattctaatttatgactacatggagaatgggaacctcaagagccatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="144306" stop="145422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144606" g_stop="145122" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E267055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144606" e_stop="145122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACTTTACAGTCTTTCTTCTTCTTCTCCAAATCTTCATATGTTTTCAACTTTGCTACATTGAAGTTTGCCCTGTGAGTTTCCTATTTTGCTGTAGAAGTTTGCGCTGTCAAATACTAGTAGATTCCATTATCTATTGATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTG</genome_strand>
        <mrna_strand>AAGACTTTACAGTCTTTCTTCTTCTTCTCCAAATCTTCATATGTTTTCAACTTTGCTACATTGAAGTTTGCCCTGTGAGTTTCCTATTTTGCTGTAGAAGTTTGCGCTGTCAAATACTAGTAGATTCCATTATCTATTGATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702010" ref_strand="+" ref_description="SGN-E702010 [FA17CC04]">
      <seq>gtttgccctgtgagttttcgattttgctgtagaagtttgccctgtcaaatactagtagattccattatctattaatgggaagcaagtattccaaggcaacaaattcgataaatgatgcttctaacttgagttatggcgttccttttgaaaattatcgagttccttttgtagatttggaggaagcaactaacaactttgatgacaattttttcattggagagggtggatttgggaaggtttacaggggtgttttgcgtgatggaacaaaggtcgccctgaaaaagcataaacctgagtcctcacaaggtattgaagagttcgaaacagaaattgagattctctcattttgcagccatccgcatctggtttcattgataggattctgtgatgaaagaaatgagatgattctaatttatgactacatggagaatgggaacctcaagagccatttgtatggatcagatctaccctccatgagctgggagcagaggctggagatatgtatcggggcagccagaggtcttcactaccttcataagaatgcagttatacatcgtgatgtcaagtgtacaaacatattgcttgatgagaattttgtgccaaaaattactgattttggaatatctaagacaatgcccgagcttgatcaaacccatcttagcacagtagtgagaggaaatataggctacattgcccctgaatatgctttgtggggacagctgacagaaaaatctgatgtttattctttcggtgttgttttattcgaagttctttgtgctangcctgccttagatcgttcagagataatgagtttagatgatgagacgcagaagatgggacagttggaacaaatgtagatcccactattgcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="144371" stop="145850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144671" g_stop="145550" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E702010" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144671" e_stop="145550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCCCTGTGAGTTTCCTATTTTGCTGTAGAAGTTTGCGCTGTCAAATACTAGTAGATTCCATTATCTATTGATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTTCACTACCTTCATACTAACGGAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCTAAGACAATGCCCGAGCTTGATCTAACCCATCTTAGCACAGTAGTGAGAGGAAATATAGGCTACATTGCCCCTGAATATGCTTTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGCCTGCCCTATATCTTTCAGAGATGATGAGTTCTGATGATGAGACGCAGAAGATGGGACAGTTGGAACAAATTGTAGATCCCGCTATTGCGGC</genome_strand>
        <mrna_strand>GTTTGCCCTGTGAGTTTTCGATTTTGCTGTAGAAGTTTGCCCTGTCAAATACTAGTAGATTCCATTATCTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCGATAAATGATGCTTCTAACTTGAGTTATGGCGTTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAATTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACCTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGATCAGATCTA-CC-C--T--CCATGAGCTGGGAGCAGAGGCTGGAGATATGTATCGGGGCAGCCAGAGGTCTTCACTACCTTCATAAGAATGCAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCTAAGACAATGCCCGAGCTTGATCAAACCCATCTTAGCACAGTAGTGAGAGGAAATATAGGCTACATTGCCCCTGAATATGCTTTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTANGCCTGCCTTAGATCGTTCAGAGATAATGAGTTTAGATGATGAGACGCAGAAGATGGGACAGTTGGAACAAA-TGTAGATCCCACTATTGCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200566" ref_strand="+" ref_description="SGN-E200566 [cLEB-8-L6]">
      <seq>gcacgagctcgtgccgaattcggcacgaggtttgccctgtgagtttcctattttgctgtagaagtttgcgctgtcaaatactagtagattccattatctattgatgggaagcaagtattccaaggcaacaaattccataaatgatgcttctaacttgagttatggcattccttttgaaaattatcgagttccttttgtagatttggaggaagcaactaacaactttgatgacaagtttttcattggagagggtggatttgggaaggtttacaggggtgttttgcgtgatggaacaaaggtcgccctgaaaaagcataaacgtgagtcctcacaaggtattgaagagttcgaaacagaaattgagattctctcattttgcagccatccgcatctggtttcattgataggattctgtgatgaaagaaatgagatgattctaatttatgactacatggagaatgggaacctcaagagccatttgtatggctcagatctacccactatgagcatgagctgggagcagaggctggagatatgcataagggcagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="144368" stop="145491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144672" g_stop="145191" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="550" r_length="520" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E200566" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144672" e_stop="145191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCCTGTGAGTTTCCTATTTTGCTGTAGAAGTTTGCGCTGTCAAATACTAGTAGATTCCATTATCTATTGATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCC</genome_strand>
        <mrna_strand>TTTGCCCTGTGAGTTTCCTATTTTGCTGTAGAAGTTTGCGCTGTCAAATACTAGTAGATTCCATTATCTATTGATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAAGGGCAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697345" ref_strand="+" ref_description="SGN-E697345 [FA02BH01]">
      <seq>gagttttcgattttgctgtagaagtttgccctgtcaaatactagtagattccattatctattaatgggaagcaagtattccaaggcaacaaattcgataaatgatgcttctaacttgagttatggcgttccttttgaaaattatcgagttccttttgtagatttggaggaagcaactaacaactttgatgacaattttttcattggagagggtggatttgggaaggtttacaggggtgttttgcgtgatggaacaaaggtcgccctgaaaaagcataaacctgagtcctcacaaggtattgaagagttcgaaacagaaattgagattctctcattttgcagccatccgcatctggtttcattgataggattctgtgatgaaagaaatgagatgattctaatttatgactacatggagaatgggaacctcaagagccatttgtatggatcagatctaccctccatgagctgggagcagaggctggagatatgtatcggggcagccagaggtcttcactaccttcataagaatgcagttatacatcgtgatgtcaagtgtacaaacatattgcttgatgagaattttgtgccaaaaattactgattttggaatatctaagacaatgcccgagcttgatcaaacccatcttagcacagtagtgagaggaaatataggctacattgcccctgaatatgctttgtggggacagctgacagaaaaatctgatgtttattctttcggtgttgttttattcgaagttctttgtgctaggcctgccttagatcgntcagagataatgagtttagatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="144382" stop="145798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144682" g_stop="145498" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="811" r_length="811" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E697345" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144682" e_stop="145498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTCCTATTTTGCTGTAGAAGTTTGCGCTGTCAAATACTAGTAGATTCCATTATCTATTGATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTTCACTACCTTCATACTAACGGAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCTAAGACAATGCCCGAGCTTGATCTAACCCATCTTAGCACAGTAGTGAGAGGAAATATAGGCTACATTGCCCCTGAATATGCTTTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGCCTGCCCTATATCTTTCAGAGATGATGAGTTCTGATGATG</genome_strand>
        <mrna_strand>GAGTTTTCGATTTTGCTGTAGAAGTTTGCCCTGTCAAATACTAGTAGATTCCATTATCTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCGATAAATGATGCTTCTAACTTGAGTTATGGCGTTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAATTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACCTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGATCAGATCTA-CC-C--T--CCATGAGCTGGGAGCAGAGGCTGGAGATATGTATCGGGGCAGCCAGAGGTCTTCACTACCTTCATAAGAATGCAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCTAAGACAATGCCCGAGCTTGATCAAACCCATCTTAGCACAGTAGTGAGAGGAAATATAGGCTACATTGCCCCTGAATATGCTTTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGCCTGCCTTAGATCGNTCAGAGATAATGAGTTTAGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E741111" ref_strand="+" ref_description="SGN-E741111 [GI|557881]">
      <seq>atgggaagcaagtattccaaggcaacaaattcgataaatgatgcttctaacttgagttatggcgttccttttgaaaattatcgagttccttttgtagatttggaggaagcaactaacaactttgatgacaattttttcatcggagagggtggatttgggaaggtttacaggggtgttttgcgtgatggaacaaaggtcgccctgaaaaagcataaacctgagtcctcacaaggtattgaagagttcgaaacagaaattgagattctctcattttgcagccatccgcatctggtttcattgataggattctgtgatgaaagaaatgagatgattctaatttatgactacatggagaatgggaacctcaagagccatttgtatggatcagatctaccctccatgagctgggagcagaggctggagatatgtatcggggcagccagaggtcttcactaccttcataagaatgcagttatacatcgtgatgtcaagtgtacaaacatattgcttgatgagaattttgtgccaaaaattactgattttggaatatctaagacaatgcccgagcttgatcaaacccatcttagcacagtagtgagaggaaatataggctacattgcccctgaatatgctttgtggggacagctgacagaaaaatctgatgtttattctttcggtgttgttttattcgaagttctttgtgctaggcctgccttagatcgttcagagataatgagtttagatgatgagacgcagaagatgggacagttggaacaaattgtagatcccactattgcggccaaaataagaccagagtccctcaggatgtttggagaaacagcgatcaaatgcttagctccgtctagtaaaaataggccatcaatgggtgatgtgctgtggaaactggagtatgcactttgtctccaagagcctaccattcaagatgatcctgaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="144445" stop="146007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144745" g_stop="145707" g_length="963"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="957" r_length="957" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E741111" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>963</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E741111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144745" e_stop="145707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTTCACTACCTTCATACTAACGGAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCTAAGACAATGCCCGAGCTTGATCTAACCCATCTTAGCACAGTAGTGAGAGGAAATATAGGCTACATTGCCCCTGAATATGCTTTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGCCTGCCCTATATCTTTCAGAGATGATGAGTTCTGATGATGAGACGCAGAAGATGGGACAGTTGGAACAAATTGTAGATCCCGCTATTGCGGCCAAAATAAGACCAGAGTCCCTCAGGATGTTTGGAGAAACAGCGATGAAATGCTTAGCTCCGTCTAGTAAAAATAGGCCATCAATGGGTGATGTGCTGTGGAAACTGGAGTATGCACTTTGTCTCCAAGAGCCTACCATTCAAGATGATCCTGAATGA</genome_strand>
        <mrna_strand>ATGGGAAGCAAGTATTCCAAGGCAACAAATTCGATAAATGATGCTTCTAACTTGAGTTATGGCGTTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAATTTTTTCATCGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACCTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGATCAGATCTA-CC-C--T--CCATGAGCTGGGAGCAGAGGCTGGAGATATGTATCGGGGCAGCCAGAGGTCTTCACTACCTTCATAAGAATGCAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCTAAGACAATGCCCGAGCTTGATCAAACCCATCTTAGCACAGTAGTGAGAGGAAATATAGGCTACATTGCCCCTGAATATGCTTTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGCCTGCCTTAGATCGTTCAGAGATAATGAGTTTAGATGATGAGACGCAGAAGATGGGACAGTTGGAACAAATTGTAGATCCCACTATTGCGGCCAAAATAAGACCAGAGTCCCTCAGGATGTTTGGAGAAACAGCGATCAAATGCTTAGCTCCGTCTAGTAAAAATAGGCCATCAATGGGTGATGTGCTGTGGAAACTGGAGTATGCACTTTGTCTCCAAGAGCCTACCATTCAAGATGATCCTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395322" ref_strand="+" ref_description="SGN-E395322 [TUS-43-O1]">
      <seq>atgggaagcaagtattctaaggcaacaaattccataaatgatgctttaagctcgagttatctcgttccttttgaaagttatcgagttcctttagtagatttggaggaagcaactaataattttgatcacaagtttttaattggacatggtgtctttgggaaggtttacaagggtgttttgcgtgatggagcaaaggtggccctgaaaaggcgtacacctgagtcctcacaaggtattgaagagttcgaaacagaaattgagactctctcattttgcagacatccgcatctggtttcattgataggattctgtgatgaaagaaatgagatgattctaatttataaatacatggagaatgggaacctcaagagacatttgtatggatcagatctacccacaatgagcatgagctgggagcagaggcgggagatatgcataggggcagccacaggtctacactaccttcatactagagcaattatacatcgtgatgtcaagtctataaacatattgcttgatgagaatttttgtgccgaaaattactgattttggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="144445" stop="145599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144745" g_stop="145299" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E395322" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144745" e_stop="145299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTTCACTACCTTCATACTAACGGAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAA-TTTTGTGCCAAAAATTACTGATTTTGGAATA</genome_strand>
        <mrna_strand>ATGGGAAGCAAGTATTCTAAGGCAACAAATTCCATAAATGATGCTTTAAGCTCGAGTTATCTCGTTCCTTTTGAAAGTTATCGAGTTCCTTTAGTAGATTTGGAGGAAGCAACTAATAATTTTGATCACAAGTTTTTAATTGGACATGGTGTCTTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAGCAAAGGTGGCCCTGAAAAGGCGTACACCTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGACTCTCTCATTTTGCAGACATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATAAATACATGGAGAATGGGAACCTCAAGAGACATTTGTATGGATCAGATCTACCCACAATGAGCATGAGCTGGGAGCAGAGGCGGGAGATATGCATAGGGGCAGCCACAGGTCTACACTACCTTCATACTAGAGCAATTATACATCGTGATGTCAAGTCTATAAACATATTGCTTGATGAGAATTTTTGTGCCGAAAATTACTGATTTTGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396660" ref_strand="+" ref_description="SGN-E396660 [TUS-43-P2]">
      <seq>atgggaagcaagtattctaaggcaacaaattccataaatgatgctttaagctcgagttatctcgttccttttgaaagttatcgagttcctttagtagatttggaggaagcaactaataattttgatcacaagtttttaattggacatggtgtctttgggaaggtttaccagggtgttttgcgtgatggagcaaaggtggccctgaaaaggcgtacacctgagtcctcacaaggtattgaagagttcgaaacagaaattgagactctctcattttgcagacatccgcatctggtttcattgataggattctgtgatgaaagaaatgagatgattctaatttataaatacatggacaatgggaacctcaagagacatttgtatggatcagatctacccacaatgagcatgagctgggagcagaggctggagatatgcataggggcagccacaggtctacactaccttcatactacaccaattatacatcgtgatgtcaagtctacaaacatattgcttgatgagaattttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="144445" stop="145576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144745" g_stop="145276" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E396660" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144745" e_stop="145276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTTCACTACCTTCATACTAACGGAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGC</genome_strand>
        <mrna_strand>ATGGGAAGCAAGTATTCTAAGGCAACAAATTCCATAAATGATGCTTTAAGCTCGAGTTATCTCGTTCCTTTTGAAAGTTATCGAGTTCCTTTAGTAGATTTGGAGGAAGCAACTAATAATTTTGATCACAAGTTTTTAATTGGACATGGTGTCTTTGGGAAGGTTTACCAGGGTGTTTTGCGTGATGGAGCAAAGGTGGCCCTGAAAAGGCGTACACCTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGACTCTCTCATTTTGCAGACATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATAAATACATGGACAATGGGAACCTCAAGAGACATTTGTATGGATCAGATCTACCCACAATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCACAGGTCTACACTACCTTCATACTACACCAATTATACATCGTGATGTCAAGTCTACAAACATATTGCTTGATGAGAATTTTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391168" ref_strand="+" ref_description="SGN-E391168 [TUS-47-J24]">
      <seq>atgggaagcaagtattctaaggcaacaaattccataaatgatgctttaagctcgagttatctcgttccttttgaaagttatcgagttcctttagtagatttggaggaagcaactaataattttgatcacaagtttttaattggacatggtgtctttgggaaggtttacaagggtgttttgcgtgatggagcaaaggtggccctgaaaaggcgtacacctgagtcctcacaaggtattgaagagttcgaaacagaaattgagactctctcattttgcagacatccgcatctggtttcattgataggattctgtgatgaaagaaatgagatgattctaatttataaatacatggagaatgggaacctcaagagacatttgtatggatcagatctacccacaatgagcatgagctgggagcagagggtggagatatgcataggggcagccagaggtctacactaccttcttactagagcaattatacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="144445" stop="145531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144745" g_stop="145231" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E391168" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144745" e_stop="145231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTTCACTACCTTCATACTAACGGAGTTATACATC</genome_strand>
        <mrna_strand>ATGGGAAGCAAGTATTCTAAGGCAACAAATTCCATAAATGATGCTTTAAGCTCGAGTTATCTCGTTCCTTTTGAAAGTTATCGAGTTCCTTTAGTAGATTTGGAGGAAGCAACTAATAATTTTGATCACAAGTTTTTAATTGGACATGGTGTCTTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAGCAAAGGTGGCCCTGAAAAGGCGTACACCTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGACTCTCTCATTTTGCAGACATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATAAATACATGGAGAATGGGAACCTCAAGAGACATTTGTATGGATCAGATCTACCCACAATGAGCATGAGCTGGGAGCAGAGGGTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCTTACTAGAGCAATTATACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391121" ref_strand="+" ref_description="SGN-E391121 [TUS-48-P2]">
      <seq>atgggaagcaagtattctaaggcaacaaattccataaatgatgctttaagctcgagttatctcgttccttttgaaagttatcgagttcctttagtagatttggaggaagcaactaataattttgatcacaagtttttaattggacatggtgtctttgggaaggtttacaagggtgttttgcgtgatggagcaaaggtggccctgaaaaggcgtacacctgagtcctcacaaggtattgaagagttcgaaacagaaattgagactctctcattttgcagacatccgcatctggtttcagtgacaggattctgtgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="144445" stop="145362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144745" g_stop="145062" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E391121" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144745" e_stop="145062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAA</genome_strand>
        <mrna_strand>ATGGGAAGCAAGTATTCTAAGGCAACAAATTCCATAAATGATGCTTTAAGCTCGAGTTATCTCGTTCCTTTTGAAAGTTATCGAGTTCCTTTAGTAGATTTGGAGGAAGCAACTAATAATTTTGATCACAAGTTTTTAATTGGACATGGTGTCTTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAGCAAAGGTGGCCCTGAAAAGGCGTACACCTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGACTCTCTCATTTTGCAGACATCCGCATCTGGTTTCAGTGACAGGATTCTGTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266651" ref_strand="+" ref_description="SGN-E266651 [cLEI-5-I12]">
      <seq>tgaagagttctttacagaaattgagattctctcattttgcagccatccgcatctggtttcattgataggattctgtgatgaaagaaatgagatgattctaatttatgactacatggagaatgggaacctcaagagccatttgtctggctcagatctacccactatgagcatgagctgggagcagaggctggagatatgcatacgggcagccagaggtcttcactaccttcatactaacggagttatacatcgtgatgtcaagtgtacaaacatattgcttgatgagaattttgtgccaaaaattactgattctggaatatctaagacaatgcccgagcttgatctaacccatcttagcacagtagtgagaggaaatataggctacattgcccctgaatatgctttgtggggacagctgacagaaaaatctgatgtttattctttcggtgttgttgtattcgaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="144694" stop="145748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144981" g_stop="145448" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="SGN-E266651" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144981" e_stop="145448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTTCACTACCTTCATACTAACGGAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCTAAGACAATGCCCGAGCTTGATCTAACCCATCTTAGCACAGTAGTGAGAGGAAATATAGGCTACATTGCCCCTGAATATGCTTTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCT</genome_strand>
        <mrna_strand>TGAAGAGTTCTTTACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTCTGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATACGGGCAGCCAGAGGTCTTCACTACCTTCATACTAACGGAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTCTGGAATATCTAAGACAATGCCCGAGCTTGATCTAACCCATCTTAGCACAGTAGTGAGAGGAAATATAGGCTACATTGCCCCTGAATATGCTTTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTGTATTCGAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703592" ref_strand="+" ref_description="SGN-E703592 [FA21DG02]">
      <seq>cagagttcctagaactcaaatacttaaaactggacaacctcaaagttgtacaatggtccatctctgatgatgcttttcctaagcttgaacatttggttttaacgaaatgtaagcatcttgagaaaatcccttctcgttttgaagatgctgtttgcctaaatagagttgaggtgaactggtgcaactggaatgttgccaattcagcccaagatattcaaactatgcaacatgaagttatagcaaatgattcattcacagttactatacagcctccagattggtctaaagaacagccccttgactcttagcaaagaggtagcagcagctaaagttcaaggcattttgtttatttctagaacaaggggagttcttacgttgaattcttgaaaagaagaagaatcaggagcagagtatatatgacgcgagaatacttggcctaaaagtttttgcttcactaatttaactattgccgtggatgaaacaagcatggcaacattttcaacaactatcactcaagcaatgtaaaaaaaggaggttctacgagtggtacatgtaagagttttgtgcacacaagaggttctgagacttgaaccatccatgtccaaggcagttcagatgctagtaaagaaagaagaagatgaacctgcactaattaatcctccctttatgaataagagaatgagaaaaagatggagcttcatgaaccaaaagttaccttttttttttttaatggcattactttgaagcacatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="148279" stop="145937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147979" g_stop="147667" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147666" i_stop="147192" i_length="475">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.616" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="147191" g_stop="147096" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="409" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="147095" i_stop="146647" i_length="449">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146646" g_stop="146633" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="422" r_length="13" r_score="0.857"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146632" i_stop="146575" i_length="58">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="146574" g_stop="146237" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="756" r_length="334" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E703592" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147979" e_stop="147667"/>
          <exon e_start="147191" e_stop="147096"/>
          <exon e_start="146646" e_stop="146633"/>
          <exon e_start="146574" e_stop="146237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTTCCTAGAACTCAAATACTTAAAACTGGACAACCTCAAAGTTGTACAATGGTCCATCTCTGATGATGCTTTTCCTAAGCTTGAACATTTGGTTTTAACGAAATGTAAGCATCTTGAGAAAATCCCTTCTCGTTTTGAAGATGCTGTTTGTCTAAATAGAGTTGAGGTGAACTGGTGCAACTGGAATGTTGCCAATTCAGCCCAAGATATTCAAACTATGCAACATGAAGTTATAGCAAATGATTCATTCACAGTTACTATACAGCCTCCAGATTGGTCTAAAGAACAGCCCCTTGACTCTTAGCAAAGGTTTGTTCTTGCTGTGTTCATCCAAGTGCATTTAACATTTATTCATTTTGTTTTACACCAGAACATGTTTATTTTGCTAGTATTACTTGATACATTAAAAGAAATCGAACTCATATTTCTGCTACAGTCTTAACTTTTCTTGGGCTTACTTGAGGTCTAGATTAGATCAATGGTTCATGTAATTTTTAATTCACTGTTTCATTCAACTGTCATCATAGTTGTGAAATGACAATATTGTTATCCCTAGCCAAATTTATTATGTTCAAATGAAAACTGATGTCACAACTACTTTTTTGTGAAATGTTTTTGAATTTTTTGCTATAAAATTGACGAATTGACAGGCTTCTATATTTGTCAGCTAAACTCTTTGTCACCAGAAGTGTATTTAGAATTACTGTGGTTTTATGAAAGAGGTCTGTAGAATTTTATGCTTTTGCAGAATCTAGTTTAAAACAACAACACTTCTCTGTTTCAGAGGTAGCAGAAGCTAAAGTTCAAGGCATTTTGTTTATTTCTAGAACAAGTGGAGTTCTTATGTTGAATTCTTGAAAAGAAGAAGAATCAGGAGCAGGTAAAGATTATCTCTTTTTATGTTTTTCTTCTTTTAGATGTTATTTCTTCATCTTGAACGTGAACACCGCTGAAAGCATTTTAATAAAACCGGAGAGAAAAATAAGATCTTTTTATATAAAGCATTATCATGTAAATATGCCTAAATCCATATGGTACAACTGTTTGACAAAATGATAGAGAGGGGAGTTTTATAGTATAAGTAAAACAGGATTGAGAAAAAAATCCTTGCACGATTTTCAATTTCTGGCCACATCACAATGTGTGTCAAAGTTCCCCTCTTTAAGTGGAACAAGCAATCAGAAAAGCACATTCTTATCGGTGACATACCAATACCAGCTGACTGTCTCATCTTGGTTAACTTAGCCTTGCTTACTTAGACTATTAGATTAGTTACTAATGAGCTGGTAAATTGGAACCAAATGTAGTTAGCTTGATGAGCTGGTAGACATGTATATATGAAGATACACGCGTAACTTTAGTCGATGGTTAATTTTCATTTTGTATTTTTTTTCTTCACAGAGTATATATGACTTGGCCTAAAAGTTTTTGCTTCACTAATTTAACTATTGCCGTGGATGAAACAAGCATGGCAACATTTT---CAACTATCACTCAAGCAATGTAAAAAATGGAGGTTCTACGAGCGGTACATGTAAGAGTTTTGTGCACACAAGAGGTTCTGAGACTTGAACCATCCATGTCCAAGGCAGTTGAGATGCTAGTAAAGAAAGAAGAAGATGAGCCTGCACAAATTAATCCTCCCTGTATGAATGAGAGAATGAGAAAAAGATGGAGCTTCATGAACCAAAAGTTACCTTTTTTTTTTCTTCTTAATGGCATTACTTTGAAGCACATGTTTG</genome_strand>
        <mrna_strand>CAGAGTTCCTAGAACTCAAATACTTAAAACTGGACAACCTCAAAGTTGTACAATGGTCCATCTCTGATGATGCTTTTCCTAAGCTTGAACATTTGGTTTTAACGAAATGTAAGCATCTTGAGAAAATCCCTTCTCGTTTTGAAGATGCTGTTTGCCTAAATAGAGTTGAGGTGAACTGGTGCAACTGGAATGTTGCCAATTCAGCCCAAGATATTCAAACTATGCAACATGAAGTTATAGCAAATGATTCATTCACAGTTACTATACAGCCTCCAGATTGGTCTAAAGAACAGCCCCTTGACTCTTAGCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTAGCAGCAGCTAAAGTTCAAGGCATTTTGTTTATTTCTAGAACAAGGGGAGTTCTTACGTTGAATTCTTGAAAAGAAGAAGAATCAGGAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GTATATATGACG..........................................................CG-AGA-AT-ACTTGGCCTAAAAGTTTTTGCTTCACTAATTTAACTATTGCCGTGGATGAAACAAGCATGGCAACATTTTCAACAACTATCACTCAAGCAATGTAAAAAAAGGAGGTTCTACGAGTGGTACATGTAAGAGTTTTGTGCACACAAGAGGTTCTGAGACTTGAACCATCCATGTCCAAGGCAGTTCAGATGCTAGTAAAGAAAGAAGAAGATGAACCTGCACTAATTAATCCTCCCTTTATGAATAAGAGAATGAGAAAAAGATGGAGCTTCATGAACCAAAAGTTACC--TTTTTTTT-TT-TTAATGGCATTACTTTGAAGCACATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347693" ref_strand="+" ref_description="SGN-E347693 [cTOF-26-E9]">
      <seq>attgttcgttcattcttaccaagatgaaattgatctgtggcgcccatctcgctctaatgtccgctctttactattcaatgcaattgatccaaataacttggtatggccgcgtgatatctccttcatttttgagagcttcaagcttggtaaagtgttggatttggaatcattcaacattggtgggacttttcccactgaaatacaatatctaattcagatgaagtactttgcggcccaaactgatgcaaattcaattccttcatctatagctaagcttgaaaatcttgagacttttgtcgtaagaggattgggaggagagatgatattaccttgttcacttctgaagatggtgaaattgaggcatatacatgtaaatgatcgggtttcttttggtttgcatgagaacatggatgttttaactggtaactcacaattatctaatttggaaaccttttctactccgcgtctcttttatggtaaagacgcagagaagattttgaggaagatgccaaaattgagaaatttgagttgcatattttcagggacatttggttattcaaggaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="149097" stop="147930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148797" g_stop="148230" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E347693" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="148797" e_stop="148230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTCGTTCATTCTTACCAAGATGAAATTGATCTGTGGCGCCCATCTCGCTCTAATGTCCGCTCTTTACTATTCAATGCAATTGATCCAGATAACTTGTTATGGCCGCGTGATATCTCCTTCATTTTTGAGAGCTTCAAGCTTGTTAAAGTGTTGGATTTGGAATCATTCAACATTGGTGGTACTTTTCCCACTGAAATACAATATCTAATTCAGATGAAGTACTTTGCGGCCCAAACTGATGCAAATTCAATTCCTTCATCTATAGCTAAGCTTGAAAATCTTGAGACTTTTGTCGTAAGAGGATTGGGAGGAGAGATGATATTACCTTGTTCACTTCTGAAGATGGTGAAATTGAGGCATATACATGTAAATGATCGGGTTTCTTTTGGTTTGCATGAGAACATGGATGTTTTAACTGGTAACTCACAATTATCTAATTTGGAAACCTTTTCTACTCCGCGTCTCTTTTATGGTAAAGACGCAGAGAAGATTTTGAGGAAGATGCCAAAATTGAGAAAATTGAGTTGCATATTTTCAGGGACATTTGGTTATTCAAGGAAATTG</genome_strand>
        <mrna_strand>ATTGTTCGTTCATTCTTACCAAGATGAAATTGATCTGTGGCGCCCATCTCGCTCTAATGTCCGCTCTTTACTATTCAATGCAATTGATCCAAATAACTTGGTATGGCCGCGTGATATCTCCTTCATTTTTGAGAGCTTCAAGCTTGGTAAAGTGTTGGATTTGGAATCATTCAACATTGGTGGGACTTTTCCCACTGAAATACAATATCTAATTCAGATGAAGTACTTTGCGGCCCAAACTGATGCAAATTCAATTCCTTCATCTATAGCTAAGCTTGAAAATCTTGAGACTTTTGTCGTAAGAGGATTGGGAGGAGAGATGATATTACCTTGTTCACTTCTGAAGATGGTGAAATTGAGGCATATACATGTAAATGATCGGGTTTCTTTTGGTTTGCATGAGAACATGGATGTTTTAACTGGTAACTCACAATTATCTAATTTGGAAACCTTTTCTACTCCGCGTCTCTTTTATGGTAAAGACGCAGAGAAGATTTTGAGGAAGATGCCAAAATTGAGAAATTTGAGTTGCATATTTTCAGGGACATTTGGTTATTCAAGGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328738" ref_strand="+" ref_description="SGN-E328738 [cTOC-23-F15]">
      <seq>aacaacgaaaatggacaagaagataccgcacaaggtttcttggacgatcttattggtaggaatctggtgatggccatggagaagagacctaatgccaaggtgaaaacgtgccgcattcatgatttgttgcataaattctgcatggaaaaggccaaacaagaggatttccttctccagatcaatagtggagaaggtgtatttcctgaacgattggaagaataccgattgttcgttcattcttaccaagatgaaattgatctgtggcgcccatctcgctctaatgtccgctctttactattcaatgcaattgatccagataacttgttatggccgcgtgatatctccttcatttttgagagcttcaagcttgttaaagtgttggatttggaatcattcaacattggtggtacttttcccactgaaatacaatatctaattcagatgaagtactttgcggcccaaactgatgcaaattcaattccttcatctatagctaagcttgaaaatcttgagacttttgtcgtaagaggattgggaggagagatgatattaccttgttcacttctgaagatggtgaaattgaggcatatacatgtaaatgatcgggtttncttttggtttgcatgagaacatggatgttttaactggtaactcacaattatctaatttggaaaccttttctactccgcgtctcttttatggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="149434" stop="148018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149134" g_stop="148950" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="148949" i_stop="148837" i_length="113">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148836" g_stop="148318" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="705" r_length="520" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E328738" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149134" e_stop="148950"/>
          <exon e_start="148836" e_stop="148318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACGAAAATGGACAAGAAGATACCGCACAAGGTTTCTTGGACGATCTTATTGGTAGGAATCTGGTGATGGCCATGGAGAAGAGACCTAATGCCAAGGTGAAAACGTGCCGCATTCATGATTTGTTGCATAAATTCTGCATGGAAAAGGCCAAACAAGAGGATTTCCTTCTCCAGATCAATAGGTAAAAAAAACTGTATTAATTTTACATTACCAAAAAAAAAGAACTGTATTAATTTTACTGTATTATGTTTATGCCAACTCTCATTTCCATGTGTTCTCTTTTATCCAATTCAGTGGAGAAGGTGTATTTCCTGAACGATTGGAAGAATACCGATTGTTCGTTCATTCTTACCAAGATGAAATTGATCTGTGGCGCCCATCTCGCTCTAATGTCCGCTCTTTACTATTCAATGCAATTGATCCAGATAACTTGTTATGGCCGCGTGATATCTCCTTCATTTTTGAGAGCTTCAAGCTTGTTAAAGTGTTGGATTTGGAATCATTCAACATTGGTGGTACTTTTCCCACTGAAATACAATATCTAATTCAGATGAAGTACTTTGCGGCCCAAACTGATGCAAATTCAATTCCTTCATCTATAGCTAAGCTTGAAAATCTTGAGACTTTTGTCGTAAGAGGATTGGGAGGAGAGATGATATTACCTTGTTCACTTCTGAAGATGGTGAAATTGAGGCATATACATGTAAATGATCGGGTTT-CTTTTGGTTTGCATGAGAACATGGATGTTTTAACTGGTAACTCACAATTATCTAATTTGGAAACCTTTTCTACTCCGCGTCTCTTTTATGGTAA</genome_strand>
        <mrna_strand>AACAACGAAAATGGACAAGAAGATACCGCACAAGGTTTCTTGGACGATCTTATTGGTAGGAATCTGGTGATGGCCATGGAGAAGAGACCTAATGCCAAGGTGAAAACGTGCCGCATTCATGATTTGTTGCATAAATTCTGCATGGAAAAGGCCAAACAAGAGGATTTCCTTCTCCAGATCAATAG.................................................................................................................TGGAGAAGGTGTATTTCCTGAACGATTGGAAGAATACCGATTGTTCGTTCATTCTTACCAAGATGAAATTGATCTGTGGCGCCCATCTCGCTCTAATGTCCGCTCTTTACTATTCAATGCAATTGATCCAGATAACTTGTTATGGCCGCGTGATATCTCCTTCATTTTTGAGAGCTTCAAGCTTGTTAAAGTGTTGGATTTGGAATCATTCAACATTGGTGGTACTTTTCCCACTGAAATACAATATCTAATTCAGATGAAGTACTTTGCGGCCCAAACTGATGCAAATTCAATTCCTTCATCTATAGCTAAGCTTGAAAATCTTGAGACTTTTGTCGTAAGAGGATTGGGAGGAGAGATGATATTACCTTGTTCACTTCTGAAGATGGTGAAATTGAGGCATATACATGTAAATGATCGGGTTTNCTTTTGGTTTGCATGAGAACATGGATGTTTTAACTGGTAACTCACAATTATCTAATTTGGAAACCTTTTCTACTCCGCGTCTCTTTTATGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328649" ref_strand="+" ref_description="SGN-E328649 [cTOC-23-A3]">
      <seq>aacaacgaaaatggacaagaagataccgcacaaggtttcttggacgatcttattggtaggaatctggtgatggccatggagaagagacctaatgccaaggtgaaaacgtgccgcattcatgatttgttgcataaattctgcatggaaaaggccaaacaagaggatttccttctccagatcaatagtggagaaggtgtatttcctgaacgattggaagaataccgattgttcgttcattcttaccaagatgaaattgatctgtggcgcccatctcgctctaatgtccgctctttactattcaatgcaattgatccagataacttgttatggccgcgtgatatctccttcatttttgagagcttcaagcttgttaaagtgttggatttggaatcattcaacattggtggtacttttcccactgaaatacaatatctaattcagatgaagtactttgcggcccaaactgatgcaaattcaattccttcatctatagctaagcttgaaaatcttgagacttttgtcgtaagaggattgggaggagagatgatattaccttgttcacttctgaagatggtgaaattgaggcatatacatgtaaatgatcgggttttcttttggtttgcatgagaacatggatgttttaactggtaactcacaattatctaatttgggaaacttttctactccgcgtctcttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="149434" stop="148022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149134" g_stop="148950" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="148949" i_stop="148837" i_length="113">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148836" g_stop="148322" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="701" r_length="516" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="SGN-E328649" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149134" e_stop="148950"/>
          <exon e_start="148836" e_stop="148322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACGAAAATGGACAAGAAGATACCGCACAAGGTTTCTTGGACGATCTTATTGGTAGGAATCTGGTGATGGCCATGGAGAAGAGACCTAATGCCAAGGTGAAAACGTGCCGCATTCATGATTTGTTGCATAAATTCTGCATGGAAAAGGCCAAACAAGAGGATTTCCTTCTCCAGATCAATAGGTAAAAAAAACTGTATTAATTTTACATTACCAAAAAAAAAGAACTGTATTAATTTTACTGTATTATGTTTATGCCAACTCTCATTTCCATGTGTTCTCTTTTATCCAATTCAGTGGAGAAGGTGTATTTCCTGAACGATTGGAAGAATACCGATTGTTCGTTCATTCTTACCAAGATGAAATTGATCTGTGGCGCCCATCTCGCTCTAATGTCCGCTCTTTACTATTCAATGCAATTGATCCAGATAACTTGTTATGGCCGCGTGATATCTCCTTCATTTTTGAGAGCTTCAAGCTTGTTAAAGTGTTGGATTTGGAATCATTCAACATTGGTGGTACTTTTCCCACTGAAATACAATATCTAATTCAGATGAAGTACTTTGCGGCCCAAACTGATGCAAATTCAATTCCTTCATCTATAGCTAAGCTTGAAAATCTTGAGACTTTTGTCGTAAGAGGATTGGGAGGAGAGATGATATTACCTTGTTCACTTCTGAAGATGGTGAAATTGAGGCATATACATGTAAATGATCGGG-TTTCTTTTGGTTTGCATGAGAACATGGATGTTTTAACTGGTAACTCACAATTATCTAATTTGGAAACCTTTTCTACTCCGCGTCTCTTTTATG</genome_strand>
        <mrna_strand>AACAACGAAAATGGACAAGAAGATACCGCACAAGGTTTCTTGGACGATCTTATTGGTAGGAATCTGGTGATGGCCATGGAGAAGAGACCTAATGCCAAGGTGAAAACGTGCCGCATTCATGATTTGTTGCATAAATTCTGCATGGAAAAGGCCAAACAAGAGGATTTCCTTCTCCAGATCAATAG.................................................................................................................TGGAGAAGGTGTATTTCCTGAACGATTGGAAGAATACCGATTGTTCGTTCATTCTTACCAAGATGAAATTGATCTGTGGCGCCCATCTCGCTCTAATGTCCGCTCTTTACTATTCAATGCAATTGATCCAGATAACTTGTTATGGCCGCGTGATATCTCCTTCATTTTTGAGAGCTTCAAGCTTGTTAAAGTGTTGGATTTGGAATCATTCAACATTGGTGGTACTTTTCCCACTGAAATACAATATCTAATTCAGATGAAGTACTTTGCGGCCCAAACTGATGCAAATTCAATTCCTTCATCTATAGCTAAGCTTGAAAATCTTGAGACTTTTGTCGTAAGAGGATTGGGAGGAGAGATGATATTACCTTGTTCACTTCTGAAGATGGTGAAATTGAGGCATATACATGTAAATGATCGGGTTTTCTTTTGGTTTGCATGAGAACATGGATGTTTTAACTGGTAACTCACAATTATCTAATTTGGGAAACTTTTCTACTCCGCGTCTCTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>157</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="743" PGL_stop="1065"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="743" e_stop="1065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="743" e_stop="1065" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="743" stop="1065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="743" stop="1034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="743" stop="893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACATAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATCGTATAATTCGTTAGCCTTTTTCTCTGCAATATTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  *  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  R  I  I  R  *  P  F  S  L  Q  Y  L  K  *  N  I  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  H  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  V  S  L  F  L  C  N  I  *  S  K  I  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  I  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  S  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  Y  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0190L02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10320" PGL_stop="9014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10320" e_stop="9803"/>
            <exon e_start="9696" e_stop="9014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.915"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="10320" e_stop="9803" e_length="518"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9802" i_stop="9697" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="9696" e_stop="9014" e_length="683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10320" stop="9803"/>
              <exon start="9696" stop="9495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10320" stop="9916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9650" stop="9413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9649" stop="9172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9217" stop="9014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTACTTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAATCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAATTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCATTGATGAATTGATAGAAGGAGATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGGACGGGTGTCACGAACCGACACGTAGAATTA : TGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGATGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGACATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGAAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACGCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTT</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  T  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  *  K  I  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  I  D  E  L  I  E  G  D  *  W  I  G  C  H  E  P  T  H  R  I  S  G  T  G  V  T  N  R  H  I  E  L  V  D  R  V  S  R  T  D  T  *  N  *  W  I  G  C  H  E  P  T  H  R  I  S  G  S  G  V  T  N  R  H  I  E  L  V  G  R  V  S  R  T  D  T  *  N  Y :   G  T  G  V  T  N  R  H  I  E  L  V  D  R  V  S  R  T  D  T  *  M  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  *  L  *  H  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  *  S  A  A  N  V  P  S  S  S  T  Q  Q  *  R  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G  L  D  L  P  L  H  V  L  M  P  *  S  S  G  M  D  *  L  L  C  I  F  S  F  L  E  T  L  R  F  S  N  L  K  *  M  F  L  *  *  *  L  P  D  F  G  D  N  N  S  Y  *  F  </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  L  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  E  K  S  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  L  M  N  *  *  K  E  I  S  G  S  G  V  T  N  R  H  I  E  L  V  G  R  V  S  R  T  D  T  *  N  *  W  I  G  C  H  E  P  T  H  R  I  S  G  S  G  V  T  N  R  H  I  E  L  V  D  R  V  S  R  T  D  T  *  N  *  W  D  G  C  H  E  P  T  R  R  I   : M  G  R  V  S  R  T  D  T  *  N  *  W  I  G  C  H  E  P  T  R  R  C  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  D  Y  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  N  C  E  V  Q  Q  T  C  R  H  L  R  L  N  S  N  A  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  W  I  F  L  F  M  S  *  C  L  E  V  P  A  W  T  S  F  Y  V  F  L  A  S  *  K  L  L  D  L  V  I  *  S  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  I  V  I  D  F </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  Y  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  K  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  I  K  I  M  R  L  M  M  P  W  *  E  R  R  H  *  *  I  D  R  R  R  L  V  D  R  V  S  R  T  D  T  *  N  *  W  D  G  C  H  E  P  T  H  R  I  S  G  S  G  V  T  N  R  H  I  E  L  V  D  R  V  S  R  T  D  T  *  N  *  W  I  G  C  H  E  P  T  H  R  I  S  G  T  G  V  T  N  R  H  V  E  L  :  W  D  G  C  H  E  P  T  H  R  I  S  G  S  G  V  T  N  R  H  V  D  V  G  D  R  S  V  T  Y  R  H  K  R  T  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  I  M  T  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  K  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  M  Y  F  *  L  L  R  N  S  *  I  *  *  F  E  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  L  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9387" stop="9106"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLIVKCSKRAVIFDSTVTLASLHYSGYQGELMLLAWTGSSSSCLDALKFRHGLAFMYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9871" stop="9803"/>
                    <exon start="9696" stop="9544"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WIGCHEPTHRISGTGVTNRHVELWDGCHEPTHRISGSGVTNRHVDVGDRSVTYRHKRTNEYEGAECHVPTQEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="9324" PGL_stop="9660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9324" e_stop="9660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="9324" e_stop="9660" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9324" stop="9660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAGTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTACATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  M  S  *  S  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  H  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  C  H  N  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  S  P  L  V  S  V  R  D  T  P  I  P  Y  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  V  I  I  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  V  L  L  C  R  Y  V  T  L  R  S  P  T  S  T  C  R  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0190L02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="21697" PGL_stop="24305"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21697" e_stop="22092"/>
            <exon e_start="23380" e_stop="23489"/>
            <exon e_start="23573" e_stop="23878"/>
            <exon e_start="24251" e_stop="24305"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21697" e_stop="22092" e_length="396"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="22093" i_stop="23379" i_length="1287"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23380" e_stop="23489" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="23490" i_stop="23572" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23573" e_stop="23878" e_length="306"/>
          </exon>
          <intron i_serial="3" don_prob="0.929" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23879" i_stop="24250" i_length="372"/>
          </intron>
          <exon e_serial="4" e_score="0.909">
            <gDNA_exon_boundary e_start="24251" e_stop="24305" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21697" stop="22092"/>
              <exon start="23380" stop="23489"/>
              <exon start="23573" stop="23878"/>
              <exon start="24251" stop="24305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21697" stop="22092"/>
              <exon start="23380" stop="23489"/>
              <exon start="23573" stop="23853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTCCATTGAAAAACTCAAAAACAAGTTTTCGCAGAGAGAAGAATCAGTCGGAAGAAGGTGGTGAATTTGTCAAATCGGAGAAGGAGAATAGTGAATCTCTGTATGTCAGAGGATTACTACTACTACTATTACAGTAACAAGTACTACGGCGGTTACGGTGAACTTACCAATCCATTACAATGGCCTCAGCTCAGGAAAAGACGACGGTTTCTGCCCCTTCACGAAATGCTTCCGCCGCTTCTGAAACTGAATGGAATGCTGGTGGAACCGTAACTGATGTTTCTGATCTTTCATCCACCAGATCGGCTAGTTCTGCTGCTCCCTCTACTTTGACGGCTGTGATTGATTCTATTGATCGTCCTTCTGCGCAAAATCAGCAGCCTGCTGTGAAAG : GACTGCCTACCTTATTGAGGGCTCAAACTCACCATCCCTTGGACCCCTTAACTGCTGCTGAAATTTCTGTGGCCGTGGCAACTGTCAGGGCAGCTGGAAGCACTCCCGAG : GTGAGAGATAGCATGCGCTTTGTTGAGGTTGTTTTGGTGGAACCAGATAAGAGTGTGGTTGCTTTAGCTGATGCGTACTTCTTTCCTCCTTTTCAACCATCTTTATTGCCGAGAACAAAAGGTGGGCCTGTAATTCCCAGTAAACTTCCTCCAAGGAAAGCTAAACTGATTGTTTATAACAAGAAATCAAATGAGACCAGCATATGGATTGTTGAGCTCTCACAGGTTCATGCTGTCACTCGAGGAGGCCACCACCGTGGCAAAGTCATTTCATCTAAAGTCGTGCCCGATATACAGCCACCAATG : GACGCCGTTGAATATGCTGAATGCGAAGCCGTGGTGAAGGATTTCCCTCCTTTTC</gDNA_template>
            <first_frame> I  L  H  *  K  T  Q  K  Q  V  F  A  E  R  R  I  S  R  K  K  V  V  N  L  S  N  R  R  R  R  I  V  N  L  C  M  S  E  D  Y  Y  Y  Y  Y  Y  S  N  K  Y  Y  G  G  Y  G  E  L  T  N  P  L  Q  W  P  Q  L  R  K  R  R  R  F  L  P  L  H  E  M  L  P  P  L  L  K  L  N  G  M  L  V  E  P  *  L  M  F  L  I  F  H  P  P  D  R  L  V  L  L  L  P  L  L  *  R  L  *  L  I  L  L  I  V  L  L  R  K  I  S  S  L  L  *  K  :  D  C  L  P  Y  *  G  L  K  L  T  I  P  W  T  P  *  L  L  L  K  F  L  W  P  W  Q  L  S  G  Q  L  E  A  L  P  R :   *  E  I  A  C  A  L  L  R  L  F  W  W  N  Q  I  R  V  W  L  L  *  L  M  R  T  S  F  L  L  F  N  H  L  Y  C  R  E  Q  K  V  G  L  *  F  P  V  N  F  L  Q  G  K  L  N  *  L  F  I  T  R  N  Q  M  R  P  A  Y  G  L  L  S  S  H  R  F  M  L  S  L  E  E  A  T  T  V  A  K  S  F  H  L  K  S  C  P  I  Y  S  H  Q  W :   T  P  L  N  M  L  N  A  K  P  W  *  R  I  S  L  L  F </first_frame>
            <second_frame>  F  S  I  E  K  L  K  N  K  F  S  Q  R  E  E  S  V  G  R  R  W  *  I  C  Q  I  G  E  G  E  *  *  I  S  V  C  Q  R  I  T  T  T  T  I  T  V  T  S  T  T  A  V  T  V  N  L  P  I  H  Y  N  G  L  S  S  G  K  D  D  G  F  C  P  F  T  K  C  F  R  R  F  *  N  *  M  E  C  W  W  N  R  N  *  C  F  *  S  F  I  H  Q  I  G  *  F  C  C  S  L  Y  F  D  G  C  D  *  F  Y  *  S  S  F  C  A  K  S  A  A  C  C  E  R :   T  A  Y  L  I  E  G  S  N  S  P  S  L  G  P  L  N  C  C  *  N  F  C  G  R  G  N  C  Q  G  S  W  K  H  S  R   : G  E  R  *  H  A  L  C  *  G  C  F  G  G  T  R  *  E  C  G  C  F  S  *  C  V  L  L  S  S  F  S  T  I  F  I  A  E  N  K  R  W  A  C  N  S  Q  *  T  S  S  K  E  S  *  T  D  C  L  *  Q  E  I  K  *  D  Q  H  M  D  C  *  A  L  T  G  S  C  C  H  S  R  R  P  P  P  W  Q  S  H  F  I  *  S  R  A  R  Y  T  A  T  N   : G  R  R  *  I  C  *  M  R  S  R  G  E  G  F  P  S  F   </second_frame>
            <third_frame>   S  P  L  K  N  S  K  T  S  F  R  R  E  K  N  Q  S  E  E  G  G  E  F  V  K  S  E  K  E  N  S  E  S  L  Y  V  R  G  L  L  L  L  L  L  Q  *  Q  V  L  R  R  L  R  *  T  Y  Q  S  I  T  M  A  S  A  Q  E  K  T  T  V  S  A  P  S  R  N  A  S  A  A  S  E  T  E  W  N  A  G  G  T  V  T  D  V  S  D  L  S  S  T  R  S  A  S  S  A  A  P  S  T  L  T  A  V  I  D  S  I  D  R  P  S  A  Q  N  Q  Q  P  A  V  K   : G  L  P  T  L  L  R  A  Q  T  H  H  P  L  D  P  L  T  A  A  E  I  S  V  A  V  A  T  V  R  A  A  G  S  T  P  E  :  V  R  D  S  M  R  F  V  E  V  V  L  V  E  P  D  K  S  V  V  A  L  A  D  A  Y  F  F  P  P  F  Q  P  S  L  L  P  R  T  K  G  G  P  V  I  P  S  K  L  P  P  R  K  A  K  L  I  V  Y  N  K  K  S  N  E  T  S  I  W  I  V  E  L  S  Q  V  H  A  V  T  R  G  G  H  H  R  G  K  V  I  S  S  K  V  V  P  D  I  Q  P  P  M  :  D  A  V  E  Y  A  E  C  E  A  V  V  K  D  F  P  P  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21861" stop="22092"/>
                    <exon start="23380" stop="23489"/>
                    <exon start="23573" stop="23878"/>
                    <exon start="24251" stop="24304"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYQSITMASAQEKTTVSAPSRNASAASETEWNAGGTVTDVSDLSSTRSASSAAPSTLTAVIDSIDRPSAQNQQPAVKGLPTLLRAQTHHPLDPLTAAEISVAVATVRAAGSTPEVRDSMRFVEVVLVEPDKSVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRKAKLIVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVISSKVVPDIQPPMDAVEYAECEAVVKDFPPF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="24686" PGL_stop="31082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24686" e_stop="24811"/>
            <exon e_start="24900" e_stop="25115"/>
            <exon e_start="25217" e_stop="25453"/>
            <exon e_start="25785" e_stop="25970"/>
            <exon e_start="26730" e_stop="26870"/>
            <exon e_start="27400" e_stop="27668"/>
            <exon e_start="30068" e_stop="30149"/>
            <exon e_start="30848" e_stop="31082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="0.968"/>
          <exon-intron don_prob="0.998" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.473" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.767" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="24686" e_stop="24811" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="24812" i_stop="24899" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24900" e_stop="25115" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.910">
            <gDNA_intron_boundary i_start="25116" i_stop="25216" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25217" e_stop="25453" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.473" acc_prob="0.989">
            <gDNA_intron_boundary i_start="25454" i_stop="25784" i_length="331"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25785" e_stop="25970" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.767" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25971" i_stop="26729" i_length="759"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26730" e_stop="26870" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.983">
            <gDNA_intron_boundary i_start="26871" i_stop="27399" i_length="529"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27400" e_stop="27668" e_length="269"/>
          </exon>
          <intron i_serial="6" don_prob="0.911" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27669" i_stop="30067" i_length="2399"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30068" e_stop="30149" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30150" i_stop="30847" i_length="698"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="30848" e_stop="31082" e_length="235"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24686" stop="24811"/>
              <exon start="24900" stop="25115"/>
              <exon start="25217" stop="25453"/>
              <exon start="25785" stop="25962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25233" stop="25453"/>
              <exon start="25785" stop="25970"/>
              <exon start="26730" stop="26790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25234" stop="25453"/>
              <exon start="25785" stop="25970"/>
              <exon start="26730" stop="26870"/>
              <exon start="27400" stop="27592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25854" stop="25970"/>
              <exon start="26730" stop="26870"/>
              <exon start="27400" stop="27668"/>
              <exon start="30068" stop="30149"/>
              <exon start="30848" stop="31035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25925" stop="25970"/>
              <exon start="26730" stop="26870"/>
              <exon start="27400" stop="27668"/>
              <exon start="30068" stop="30149"/>
              <exon start="30848" stop="31082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25953" stop="25970"/>
              <exon start="26730" stop="26870"/>
              <exon start="27400" stop="27668"/>
              <exon start="30068" stop="30145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAGAAATTACACTGCCGGTGAAACGAGAGGAGGGGTTGACCGAAGTGATGTTAAACCACTTCTTATTGTTCAACCTGAAGGTCCCAGCTTCCGTGTCAATGGACACTTTGTTGAATGGCAGAAG : TGGAACTTTCGTATTGGTTTTACCCCCAGGGAGGGCCTGGTTATCTATTCTGTTGCGTATATTGATGGTAGCAGAGGCCGTAGACCTGTTGCTCATAGACTGAGCTTCATTGAAATGGTTGTGCCCTATGGGGATCCAAATGAGCCACATTACAGAAAAAATGCTTTTGATGCAGGGGAAGATGGGCTTGGTAAAAATGCACATTCCTTAAAGAAG : GGTTGTGATTGCTTAGGTTACATTAAATATTTCGATGCGCATTTTACAAATTTCACTGGCGGTGTTGAGACAATTGAAAATTGTGTCTGTTTACACGAGGAGGATCATGGAATCTTATGGAAGCATCAAGATTGGAGAACTGGTTTAGCTGAAGTACGACGCTCCAGACGGCTAACTGTGTCTTTCATCTGTACCGTGGCAAACTATGAATATGGATTTTACTGGCATTTTTATCAG : GATGGGAAGATCGAGGCTGAGGTCAAGCTGACTGGAATTCTCAGCTTAGGTGCTCTTCTACCAGGGGAAGTTCGAAAATATGGAACAACTATTGCACCTGGCTTGTATGCACCTGTACATCAGCACTTCTTTGTGGCTCGCATGGATATGGCTGTTGATTGCAAATCAGGGGAATCACATAATCAG : GTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCATTTTATGCTGAAGAAAGATTGCTTAGAACTGAACTGGAAGCAATGCGTGATTGTAATCCTTTAACTGCACGCCATTGGATT : ATCCGGAACACAAGAACAGTCAATCGCACTGGGCAGTTAACTGGTTATAAGCTAGTACCAGGTTCAAATTGTCTGCCACTAGCTGGTTCAGAGGCAAAATTCTTGAGGAGAGCTGCCTTCTTAAAGCATAATCTTTGGGTCACCCCTTACTCTCGTGAAGAGATGTTTCCTGGAGGAGAGTTTCCAAATCAAAATCCCCGTGTTGGTGAAGGTTTGGCTACTTGGGTTCAGCAGAATCGATCCCTAGAAGAAACGCAAATAGTTCTTTG : GTATATTTTTGGACTTATACATGTTCCACGGCTAGAAGACTGGCCTGTCATGCCAGTGGAACACATTGGTTTTATGCTCCAG : CCTCATGGGTTCTTCAATTGCTCCCCAGCTGTTGATGTTCCTCCCAGCATGTCTGACTCAGATATTAAGGAAAACGGGACAGTGGCAAAGTCTTGCCACAACGATGGTGTAATGTCTAAGCTTTGATAGATTCAATCTAGTTTTGTCTTCAGGGATCGTGTTGCACAAATGCTTTCTTATCTTTGTATTTGGATTGAATAAGCGATTTCTTGTGAACATAAACATTCGACTGCAA</gDNA_template>
            <first_frame> L  R  N  Y  T  A  G  E  T  R  G  G  V  D  R  S  D  V  K  P  L  L  I  V  Q  P  E  G  P  S  F  R  V  N  G  H  F  V  E  W  Q  K  :  W  N  F  R  I  G  F  T  P  R  E  G  L  V  I  Y  S  V  A  Y  I  D  G  S  R  G  R  R  P  V  A  H  R  L  S  F  I  E  M  V  V  P  Y  G  D  P  N  E  P  H  Y  R  K  N  A  F  D  A  G  E  D  G  L  G  K  N  A  H  S  L  K  K  :  G  C  D  C  L  G  Y  I  K  Y  F  D  A  H  F  T  N  F  T  G  G  V  E  T  I  E  N  C  V  C  L  H  E  E  D  H  G  I  L  W  K  H  Q  D  W  R  T  G  L  A  E  V  R  R  S  R  R  L  T  V  S  F  I  C  T  V  A  N  Y  E  Y  G  F  Y  W  H  F  Y  Q  :  D  G  K  I  E  A  E  V  K  L  T  G  I  L  S  L  G  A  L  L  P  G  E  V  R  K  Y  G  T  T  I  A  P  G  L  Y  A  P  V  H  Q  H  F  F  V  A  R  M  D  M  A  V  D  C  K  S  G  E  S  H  N  Q  :  V  V  E  V  N  A  R  V  E  P  P  G  E  N  N  V  H  N  N  A  F  Y  A  E  E  R  L  L  R  T  E  L  E  A  M  R  D  C  N  P  L  T  A  R  H  W  I  :  I  R  N  T  R  T  V  N  R  T  G  Q  L  T  G  Y  K  L  V  P  G  S  N  C  L  P  L  A  G  S  E  A  K  F  L  R  R  A  A  F  L  K  H  N  L  W  V  T  P  Y  S  R  E  E  M  F  P  G  G  E  F  P  N  Q  N  P  R  V  G  E  G  L  A  T  W  V  Q  Q  N  R  S  L  E  E  T  Q  I  V  L  W :   Y  I  F  G  L  I  H  V  P  R  L  E  D  W  P  V  M  P  V  E  H  I  G  F  M  L  Q  :  P  H  G  F  F  N  C  S  P  A  V  D  V  P  P  S  M  S  D  S  D  I  K  E  N  G  T  V  A  K  S  C  H  N  D  G  V  M  S  K  L  *  *  I  Q  S  S  F  V  F  R  D  R  V  A  Q  M  L  S  Y  L  C  I  W  I  E  *  A  I  S  C  E  H  K  H  S  T  A  </first_frame>
            <second_frame>  *  E  I  T  L  P  V  K  R  E  E  G  L  T  E  V  M  L  N  H  F  L  L  F  N  L  K  V  P  A  S  V  S  M  D  T  L  L  N  G  R  S :   G  T  F  V  L  V  L  P  P  G  R  A  W  L  S  I  L  L  R  I  L  M  V  A  E  A  V  D  L  L  L  I  D  *  A  S  L  K  W  L  C  P  M  G  I  Q  M  S  H  I  T  E  K  M  L  L  M  Q  G  K  M  G  L  V  K  M  H  I  P  *  R  R :   V  V  I  A  *  V  T  L  N  I  S  M  R  I  L  Q  I  S  L  A  V  L  R  Q  L  K  I  V  S  V  Y  T  R  R  I  M  E  S  Y  G  S  I  K  I  G  E  L  V  *  L  K  Y  D  A  P  D  G  *  L  C  L  S  S  V  P  W  Q  T  M  N  M  D  F  T  G  I  F  I  R :   M  G  R  S  R  L  R  S  S  *  L  E  F  S  A  *  V  L  F  Y  Q  G  K  F  E  N  M  E  Q  L  L  H  L  A  C  M  H  L  Y  I  S  T  S  L  W  L  A  W  I  W  L  L  I  A  N  Q  G  N  H  I  I  R :   W  L  K  *  T  L  E  L  N  H  Q  E  K  I  M  F  I  I  M  H  F  M  L  K  K  D  C  L  E  L  N  W  K  Q  C  V  I  V  I  L  *  L  H  A  I  G  L :   S  G  T  Q  E  Q  S  I  A  L  G  S  *  L  V  I  S  *  Y  Q  V  Q  I  V  C  H  *  L  V  Q  R  Q  N  S  *  G  E  L  P  S  *  S  I  I  F  G  S  P  L  T  L  V  K  R  C  F  L  E  E  S  F  Q  I  K  I  P  V  L  V  K  V  W  L  L  G  F  S  R  I  D  P  *  K  K  R  K  *  F  F   : G  I  F  L  D  L  Y  M  F  H  G  *  K  T  G  L  S  C  Q  W  N  T  L  V  L  C  S  S :   L  M  G  S  S  I  A  P  Q  L  L  M  F  L  P  A  C  L  T  Q  I  L  R  K  T  G  Q  W  Q  S  L  A  T  T  M  V  *  C  L  S  F  D  R  F  N  L  V  L  S  S  G  I  V  L  H  K  C  F  L  I  F  V  F  G  L  N  K  R  F  L  V  N  I  N  I  R  L  Q </second_frame>
            <third_frame>   E  K  L  H  C  R  *  N  E  R  R  G  *  P  K  *  C  *  T  T  S  Y  C  S  T  *  R  S  Q  L  P  C  Q  W  T  L  C  *  M  A  E   : V  E  L  S  Y  W  F  Y  P  Q  G  G  P  G  Y  L  F  C  C  V  Y  *  W  *  Q  R  P  *  T  C  C  S  *  T  E  L  H  *  N  G  C  A  L  W  G  S  K  *  A  T  L  Q  K  K  C  F  *  C  R  G  R  W  A  W  *  K  C  T  F  L  K  E   : G  L  *  L  L  R  L  H  *  I  F  R  C  A  F  Y  K  F  H  W  R  C  *  D  N  *  K  L  C  L  F  T  R  G  G  S  W  N  L  M  E  A  S  R  L  E  N  W  F  S  *  S  T  T  L  Q  T  A  N  C  V  F  H  L  Y  R  G  K  L  *  I  W  I  L  L  A  F  L  S   : G  W  E  D  R  G  *  G  Q  A  D  W  N  S  Q  L  R  C  S  S  T  R  G  S  S  K  I  W  N  N  Y  C  T  W  L  V  C  T  C  T  S  A  L  L  C  G  S  H  G  Y  G  C  *  L  Q  I  R  G  I  T  *  S   : G  G  *  S  K  R  *  S  *  T  T  R  R  K  *  C  S  *  *  C  I  L  C  *  R  K  I  A  *  N  *  T  G  S  N  A  *  L  *  S  F  N  C  T  P  L  D   : Y  P  E  H  K  N  S  Q  S  H  W  A  V  N  W  L  *  A  S  T  R  F  K  L  S  A  T  S  W  F  R  G  K  I  L  E  E  S  C  L  L  K  A  *  S  L  G  H  P  L  L  S  *  R  D  V  S  W  R  R  V  S  K  S  K  S  P  C  W  *  R  F  G  Y  L  G  S  A  E  S  I  P  R  R  N  A  N  S  S  L  :  V  Y  F  W  T  Y  T  C  S  T  A  R  R  L  A  C  H  A  S  G  T  H  W  F  Y  A  P   : A  S  W  V  L  Q  L  L  P  S  C  *  C  S  S  Q  H  V  *  L  R  Y  *  G  K  R  D  S  G  K  V  L  P  Q  R  W  C  N  V  *  A  L  I  D  S  I  *  F  C  L  Q  G  S  C  C  T  N  A  F  L  S  L  Y  L  D  *  I  S  D  F  L  *  T  *  T  F  D  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24686" stop="24811"/>
                    <exon start="24900" stop="25115"/>
                    <exon start="25217" stop="25453"/>
                    <exon start="25785" stop="25970"/>
                    <exon start="26730" stop="26870"/>
                    <exon start="27400" stop="27668"/>
                    <exon start="30068" stop="30149"/>
                    <exon start="30848" stop="30973"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRNYTAGETRGGVDRSDVKPLLIVQPEGPSFRVNGHFVEWQKWNFRIGFTPREGLVIYSVAYIDGSRGRRPVAHRLSFIEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGILSLGALLPGEVRKYGTTIAPGLYAPVHQHFFVARMDMAVDCKSGESHNQVVEVNARVEPPGENNVHNNAFYAEERLLRTELEAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNLWVTPYSREEMFPGGEFPNQNPRVGEGLATWVQQNRSLEETQIVLWYIFGLIHVPRLEDWPVMPVEHIGFMLQPHGFFNCSPAVDVPPSMSDSDIKENGTVAKSCHNDGVMSKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="52851" PGL_stop="52157"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52851" e_stop="52157"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="52851" e_stop="52157" e_length="695"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52851" stop="52157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52851" stop="52205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTTATTATATTTCTTTCCATTTCAAGAATCTGAAACCCCTTCATCTCATTTCTTCTTTTGAACAAACTCCATTTTCATTTCAATAGCAATCGCCTTCACAAATTCGAAATCTTGTGCTAAATTTGGTTATCATTTTCCTTCAATTTCAATGGCAATGGCAGCGATTTCACCTGAATCCCAAATGATTCAAAGAACATGGCCGTGTAATTCGGACGGTGGTCCTCGTTTCACCGCCATTTCGTTTATCGGAAAACATGTCAATAAGAATGATAATCGAAGAATAACAAACAACCCCACAACCAATAATTTCCAAATTAGTCCAAAAAATCAAGATTTCGCTGATTTTTCACAACTTCCTGACGATGTGCTATTGAAAATTGCAGCTAATTTCACTTTACCTAATTTACGTGCGGCTTCACAAGTATGTAAGTCTTGGTGTGATGGGTTGAAACCTTTAAGAGAAGCTATGTTGTTTCTTAAAAATGGGAAGCGGTTTAAGCATGGGCGTGGAGGGGTGAAACCTGATTTGAATAAGGCTCTTGAATCGTTCCTTAAAGGTGCGGCTCTTGGGTCTACGTTGGCTATGGTGGATGCTGGATTGGTTTATTGGGAAATGGGGAGGAAGGAACAAGGGATTGCTTTTTACAGAAAAGCAGCTGCGCTTGGTGATCCTGCTGGTCAGTGTAATTTGGG</gDNA_template>
            <first_frame> S  L  L  Y  F  F  P  F  Q  E  S  E  T  P  S  S  H  F  F  F  *  T  N  S  I  F  I  S  I  A  I  A  F  T  N  S  K  S  C  A  K  F  G  Y  H  F  P  S  I  S  M  A  M  A  A  I  S  P  E  S  Q  M  I  Q  R  T  W  P  C  N  S  D  G  G  P  R  F  T  A  I  S  F  I  G  K  H  V  N  K  N  D  N  R  R  I  T  N  N  P  T  T  N  N  F  Q  I  S  P  K  N  Q  D  F  A  D  F  S  Q  L  P  D  D  V  L  L  K  I  A  A  N  F  T  L  P  N  L  R  A  A  S  Q  V  C  K  S  W  C  D  G  L  K  P  L  R  E  A  M  L  F  L  K  N  G  K  R  F  K  H  G  R  G  G  V  K  P  D  L  N  K  A  L  E  S  F  L  K  G  A  A  L  G  S  T  L  A  M  V  D  A  G  L  V  Y  W  E  M  G  R  K  E  Q  G  I  A  F  Y  R  K  A  A  A  L  G  D  P  A  G  Q  C  N  L   </first_frame>
            <second_frame>  P  Y  Y  I  S  F  H  F  K  N  L  K  P  L  H  L  I  S  S  F  E  Q  T  P  F  S  F  Q  *  Q  S  P  S  Q  I  R  N  L  V  L  N  L  V  I  I  F  L  Q  F  Q  W  Q  W  Q  R  F  H  L  N  P  K  *  F  K  E  H  G  R  V  I  R  T  V  V  L  V  S  P  P  F  R  L  S  E  N  M  S  I  R  M  I  I  E  E  *  Q  T  T  P  Q  P  I  I  S  K  L  V  Q  K  I  K  I  S  L  I  F  H  N  F  L  T  M  C  Y  *  K  L  Q  L  I  S  L  Y  L  I  Y  V  R  L  H  K  Y  V  S  L  G  V  M  G  *  N  L  *  E  K  L  C  C  F  L  K  M  G  S  G  L  S  M  G  V  E  G  *  N  L  I  *  I  R  L  L  N  R  S  L  K  V  R  L  L  G  L  R  W  L  W  W  M  L  D  W  F  I  G  K  W  G  G  R  N  K  G  L  L  F  T  E  K  Q  L  R  L  V  I  L  L  V  S  V  I  W  </second_frame>
            <third_frame>   L  I  I  F  L  S  I  S  R  I  *  N  P  F  I  S  F  L  L  L  N  K  L  H  F  H  F  N  S  N  R  L  H  K  F  E  I  L  C  *  I  W  L  S  F  S  F  N  F  N  G  N  G  S  D  F  T  *  I  P  N  D  S  K  N  M  A  V  *  F  G  R  W  S  S  F  H  R  H  F  V  Y  R  K  T  C  Q  *  E  *  *  S  K  N  N  K  Q  P  H  N  Q  *  F  P  N  *  S  K  K  S  R  F  R  *  F  F  T  T  S  *  R  C  A  I  E  N  C  S  *  F  H  F  T  *  F  T  C  G  F  T  S  M  *  V  L  V  *  W  V  E  T  F  K  R  S  Y  V  V  S  *  K  W  E  A  V  *  A  W  A  W  R  G  E  T  *  F  E  *  G  S  *  I  V  P  *  R  C  G  S  W  V  Y  V  G  Y  G  G  C  W  I  G  L  L  G  N  G  E  E  G  T  R  D  C  F  L  Q  K  S  S  C  A  W  *  S  C  W  S  V  *  F  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52788" stop="52159"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNSIFISIAIAFTNSKSCAKFGYHFPSISMAMAAISPESQMIQRTWPCNSDGGPRFTAISFIGKHVNKNDNRRITNNPTTNNFQISPKNQDFADFSQLPDDVLLKIAANFTLPNLRAASQVCKSWCDGLKPLREAMLFLKNGKRFKHGRGGVKPDLNKALESFLKGAALGSTLAMVDAGLVYWEMGRKEQGIAFYRKAAALGDPAGQCNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="61280" PGL_stop="62271"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61280" e_stop="61970"/>
            <exon e_start="62247" e_stop="62271"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.993"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="61280" e_stop="61970" e_length="691"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="61971" i_stop="62246" i_length="276"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="62247" e_stop="62271" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61280" stop="61970"/>
              <exon start="62247" stop="62271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61280" stop="61834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209135" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATTCACTGTCGGTGCAGTACTTAACAGCTATTGTCAGAAGGGTGACATGGAGGGAGCTCTTGGCTTCTTTTCTGAGTTCAAAATGAGAGGTACACTTCCTGATTTCTTGGGTTTCATGTACTTGGTGAGAGGCTTATGTGATAAAGGGAGGATGGAAGAATCTCGATGCATTTTGAGGGAGATGTTCCAATCAAAATCTGTCATTGATCTTCTTGATAGAGTTGAAAGTGAAATTGGAACAGAGTCAATTAGAAGTTTTCTTTCTCTGTTGTGTGAGCAAGGAAGCGTCCAAGAGGCAGTTAATATTCTCAATGAAGTGGTGACCATGTTTTTCCCTGTTAGAGAGAAGAGAGCCGATTCTAAAGACTCACCCTGCAAATACAAAATAGATATAGACTCCAGGTCATGTGAGAGTCGGAAATTGGTGAAGGCATCACACAACTGTCATAGTCAAGACACTCAAATAACGCAGTTCCTCGACTTCAATTCTTATTATTCTTGTATTGCTTTATTGTGTGCAAAAGGGGAGTATGATAATGCCAATGAAGTGGCAAAAATTGTTACTGGTTTCACGTAGAGCTTATTTGTCTTTAGACAAAATTGACTAGCTTCTCTAGATATGGTCTGAGCACTTCTAGTGTTTCTTGCCGGAACAAAGAACCATGCAATCATACAAGAGCTCTATTGG : GTGGAAAAAGAATTGGAAGCCTTAC</gDNA_template>
            <first_frame> *  I  H  C  R  C  S  T  *  Q  L  L  S  E  G  *  H  G  G  S  S  W  L  L  F  *  V  Q  N  E  R  Y  T  S  *  F  L  G  F  H  V  L  G  E  R  L  M  *  *  R  E  D  G  R  I  S  M  H  F  E  G  D  V  P  I  K  I  C  H  *  S  S  *  *  S  *  K  *  N  W  N  R  V  N  *  K  F  S  F  S  V  V  *  A  R  K  R  P  R  G  S  *  Y  S  Q  *  S  G  D  H  V  F  P  C  *  R  E  E  S  R  F  *  R  L  T  L  Q  I  Q  N  R  Y  R  L  Q  V  M  *  E  S  E  I  G  E  G  I  T  Q  L  S  *  S  R  H  S  N  N  A  V  P  R  L  Q  F  L  L  F  L  Y  C  F  I  V  C  K  R  G  V  *  *  C  Q  *  S  G  K  N  C  Y  W  F  H  V  E  L  I  C  L  *  T  K  L  T  S  F  S  R  Y  G  L  S  T  S  S  V  S  C  R  N  K  E  P  C  N  H  T  R  A  L  L   : G  G  K  R  I  G  S  L   </first_frame>
            <second_frame>  E  F  T  V  G  A  V  L  N  S  Y  C  Q  K  G  D  M  E  G  A  L  G  F  F  S  E  F  K  M  R  G  T  L  P  D  F  L  G  F  M  Y  L  V  R  G  L  C  D  K  G  R  M  E  E  S  R  C  I  L  R  E  M  F  Q  S  K  S  V  I  D  L  L  D  R  V  E  S  E  I  G  T  E  S  I  R  S  F  L  S  L  L  C  E  Q  G  S  V  Q  E  A  V  N  I  L  N  E  V  V  T  M  F  F  P  V  R  E  K  R  A  D  S  K  D  S  P  C  K  Y  K  I  D  I  D  S  R  S  C  E  S  R  K  L  V  K  A  S  H  N  C  H  S  Q  D  T  Q  I  T  Q  F  L  D  F  N  S  Y  Y  S  C  I  A  L  L  C  A  K  G  E  Y  D  N  A  N  E  V  A  K  I  V  T  G  F  T  *  S  L  F  V  F  R  Q  N  *  L  A  S  L  D  M  V  *  A  L  L  V  F  L  A  G  T  K  N  H  A  I  I  Q  E  L  Y  W  :  V  E  K  E  L  E  A  L  </second_frame>
            <third_frame>   N  S  L  S  V  Q  Y  L  T  A  I  V  R  R  V  T  W  R  E  L  L  A  S  F  L  S  S  K  *  E  V  H  F  L  I  S  W  V  S  C  T  W  *  E  A  Y  V  I  K  G  G  W  K  N  L  D  A  F  *  G  R  C  S  N  Q  N  L  S  L  I  F  L  I  E  L  K  V  K  L  E  Q  S  Q  L  E  V  F  F  L  C  C  V  S  K  E  A  S  K  R  Q  L  I  F  S  M  K  W  *  P  C  F  S  L  L  E  R  R  E  P  I  L  K  T  H  P  A  N  T  K  *  I  *  T  P  G  H  V  R  V  G  N  W  *  R  H  H  T  T  V  I  V  K  T  L  K  *  R  S  S  S  T  S  I  L  I  I  L  V  L  L  Y  C  V  Q  K  G  S  M  I  M  P  M  K  W  Q  K  L  L  L  V  S  R  R  A  Y  L  S  L  D  K  I  D  *  L  L  *  I  W  S  E  H  F  *  C  F  L  P  E  Q  R  T  M  Q  S  Y  K  S  S  I  G :   W  K  K  N  W  K  P  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61281" stop="61859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFTVGAVLNSYCQKGDMEGALGFFSEFKMRGTLPDFLGFMYLVRGLCDKGRMEESRCILREMFQSKSVIDLLDRVESEIGTESIRSFLSLLCEQGSVQEAVNILNEVVTMFFPVREKRADSKDSPCKYKIDIDSRSCESRKLVKASHNCHSQDTQITQFLDFNSYYSCIALLCAKGEYDNANEVAKIVTGFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="72267" PGL_stop="71538"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72267" e_stop="71538"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="72267" e_stop="71538" e_length="730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72267" stop="71538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721751" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATATTTCATGAGAAAAATGGGATTAATTTCTAAAAAATCAAAGGATGGAAATCATGTTTTAGAGTCATCAGAAGGCAAAAAAGGATGGATGATTACATTGAGAAGTCCATTGAAGCCTATATTAACATCCAAGAATTGGAAGAACAACAAACATGTTGATGATGATGAAGAGGAACAAGAGATTGCAACAACTCCAACATATGAGGAATCAAAGTTATCAAGAAAGTATGTAACATGTCCACCACCTCCTAAGAAGAGAAAAACATCATCAAGGTGTAATCATCATGACTATAGTAGTAGTAACAATAATAATAGGGAATTCTTTCATCCACCATTAGACTTGGAAAGTGTTTTTATGAGCATGCACACTTTAAATTAATTATTTACCGAGCCGTGAATTCAGCTATTTTGCAGAAATGCAAGATAAGACTGTATACAATAGATCATTTATGTGGTGTGTAATCAGCTCTTTGCAGAAATACAGGACAAGACCGCATATAATAGACCTTTTATGTAGTCTGACACTTCTCTAGATCCCGCACATAGCGGGAGCTTAGTGTAATTGTTCTTTTTTTTCTTTTACTTTTCCTATTTTGATTAGGTTTAAGTTCTCCCTTTGTTAATTTACTCAGACTACTTAGGTAGTAGCTTTTAATCTTGTTTGGTTTCCACAATTTCATGTGTACTACACGATTTCTCTATAAATAAATAAGATGGGATTTTCACT</gDNA_template>
            <first_frame> N  I  F  H  E  K  N  G  I  N  F  *  K  I  K  G  W  K  S  C  F  R  V  I  R  R  Q  K  R  M  D  D  Y  I  E  K  S  I  E  A  Y  I  N  I  Q  E  L  E  E  Q  Q  T  C  *  *  *  *  R  G  T  R  D  C  N  N  S  N  I  *  G  I  K  V  I  K  K  V  C  N  M  S  T  T  S  *  E  E  K  N  I  I  K  V  *  S  S  *  L  *  *  *  *  Q  *  *  *  G  I  L  S  S  T  I  R  L  G  K  C  F  Y  E  H  A  H  F  K  L  I  I  Y  R  A  V  N  S  A  I  L  Q  K  C  K  I  R  L  Y  T  I  D  H  L  C  G  V  *  S  A  L  C  R  N  T  G  Q  D  R  I  *  *  T  F  Y  V  V  *  H  F  S  R  S  R  T  *  R  E  L  S  V  I  V  L  F  F  L  L  L  F  L  F  *  L  G  L  S  S  P  F  V  N  L  L  R  L  L  R  *  *  L  L  I  L  F  G  F  H  N  F  M  C  T  T  R  F  L  Y  K  *  I  R  W  D  F  H  </first_frame>
            <second_frame>  I  Y  F  M  R  K  M  G  L  I  S  K  K  S  K  D  G  N  H  V  L  E  S  S  E  G  K  K  G  W  M  I  T  L  R  S  P  L  K  P  I  L  T  S  K  N  W  K  N  N  K  H  V  D  D  D  E  E  E  Q  E  I  A  T  T  P  T  Y  E  E  S  K  L  S  R  K  Y  V  T  C  P  P  P  P  K  K  R  K  T  S  S  R  C  N  H  H  D  Y  S  S  S  N  N  N  N  R  E  F  F  H  P  P  L  D  L  E  S  V  F  M  S  M  H  T  L  N  *  L  F  T  E  P  *  I  Q  L  F  C  R  N  A  R  *  D  C  I  Q  *  I  I  Y  V  V  C  N  Q  L  F  A  E  I  Q  D  K  T  A  Y  N  R  P  F  M  *  S  D  T  S  L  D  P  A  H  S  G  S  L  V  *  L  F  F  F  F  F  Y  F  S  Y  F  D  *  V  *  V  L  P  L  L  I  Y  S  D  Y  L  G  S  S  F  *  S  C  L  V  S  T  I  S  C  V  L  H  D  F  S  I  N  K  *  D  G  I  F  T </second_frame>
            <third_frame>   Y  I  S  *  E  K  W  D  *  F  L  K  N  Q  R  M  E  I  M  F  *  S  H  Q  K  A  K  K  D  G  *  L  H  *  E  V  H  *  S  L  Y  *  H  P  R  I  G  R  T  T  N  M  L  M  M  M  K  R  N  K  R  L  Q  Q  L  Q  H  M  R  N  Q  S  Y  Q  E  S  M  *  H  V  H  H  L  L  R  R  E  K  H  H  Q  G  V  I  I  M  T  I  V  V  V  T  I  I  I  G  N  S  F  I  H  H  *  T  W  K  V  F  L  *  A  C  T  L  *  I  N  Y  L  P  S  R  E  F  S  Y  F  A  E  M  Q  D  K  T  V  Y  N  R  S  F  M  W  C  V  I  S  S  L  Q  K  Y  R  T  R  P  H  I  I  D  L  L  C  S  L  T  L  L  *  I  P  H  I  A  G  A  *  C  N  C  S  F  F  S  F  T  F  P  I  L  I  R  F  K  F  S  L  C  *  F  T  Q  T  T  *  V  V  A  F  N  L  V  W  F  P  Q  F  H  V  Y  Y  T  I  S  L  *  I  N  K  M  G  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72266" stop="71886"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYFMRKMGLISKKSKDGNHVLESSEGKKGWMITLRSPLKPILTSKNWKNNKHVDDDEEEQEIATTPTYEESKLSRKYVTCPPPPKKRKTSSRCNHHDYSSSNNNNREFFHPPLDLESVFMSMHTLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="83360" PGL_stop="74987"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83360" e_stop="83203"/>
            <exon e_start="81427" e_stop="81227"/>
            <exon e_start="80685" e_stop="80620"/>
            <exon e_start="80532" e_stop="80415"/>
            <exon e_start="79842" e_stop="79761"/>
            <exon e_start="79671" e_stop="79584"/>
            <exon e_start="79435" e_stop="79277"/>
            <exon e_start="78841" e_stop="78668"/>
            <exon e_start="78574" e_stop="78443"/>
            <exon e_start="77083" e_stop="77018"/>
            <exon e_start="76903" e_stop="76839"/>
            <exon e_start="76139" e_stop="76048"/>
            <exon e_start="75971" e_stop="75815"/>
            <exon e_start="75561" e_stop="75262"/>
            <exon e_start="75006" e_stop="74987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.482" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.403" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83360" e_stop="83203" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81427" e_stop="81227" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80685" e_stop="80620" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80532" e_stop="80415" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.897">
            <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79842" e_stop="79761" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.732" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79671" e_stop="79584" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.883" acc_prob="0.482">
            <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79435" e_stop="79277" e_length="159"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="79276" i_stop="78842" i_length="435"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="78841" e_stop="78668" e_length="174"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.889">
            <gDNA_intron_boundary i_start="78667" i_stop="78575" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="78574" e_stop="78443" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="77083" e_stop="77018" e_length="66"/>
          </exon>
          <intron i_serial="10" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="76903" e_stop="76839" e_length="65"/>
          </exon>
          <intron i_serial="11" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76838" i_stop="76140" i_length="699"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="76139" e_stop="76048" e_length="92"/>
          </exon>
          <intron i_serial="12" don_prob="0.980" acc_prob="0.403">
            <gDNA_intron_boundary i_start="76047" i_stop="75972" i_length="76"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="75971" e_stop="75815" e_length="157"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="75561" e_stop="75262" e_length="300"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="75261" i_stop="75007" i_length="255"/>
          </intron>
          <exon e_serial="15" e_score="0.700">
            <gDNA_exon_boundary e_start="75006" e_stop="74987" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83360" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83357" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83263" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83263" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83262" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83261" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83249" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83249" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83245" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83241" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83238" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83237" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83237" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83237" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83237" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83236" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83236" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83236" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83231" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83230" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83229" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83222" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83222" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83221" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81406" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81403" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81319" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81319" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81316" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266648" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80459" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78443"/>
              <exon start="77083" stop="77028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80441" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79840" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79807" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79637" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79634" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79593" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79353" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78827" stop="78668"/>
              <exon start="78574" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78762" stop="78668"/>
              <exon start="78574" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78524" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78504" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76885" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76094" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76080" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76060" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75970" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75940" stop="75815"/>
              <exon start="75561" stop="75318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75913" stop="75815"/>
              <exon start="75561" stop="75341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75848" stop="75815"/>
              <exon start="75561" stop="75318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75540" stop="75267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281097" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75513" stop="75262"/>
              <exon start="75006" stop="74987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281144" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTTTCATCTTGGAATTTATGTCTTCACACTTGGCCACATATACAAATAATAATATACTATAATTATCCCCTTTTCCTTTACACCCCAATAAAAAATAAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT : GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG : ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG : GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG : GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG : TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG : ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT : GTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAG : GTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAG : GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT : ATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG : TAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAG : GTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG : GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTCTCCCCTCTTTTTAACTTTCATCTATGTGTTTATATATATATATATATATATATATGACTTGCTAGATTTA : GAAAAAAAGGGTAAAAGCTC</gDNA_template>
            <first_frame> W  F  H  L  G  I  Y  V  F  T  L  G  H  I  Y  K  *  *  Y  T  I  I  I  P  F  S  F  T  P  Q  *  K  I  N  *  T  S  H  S  P  F  T  K  L  T  H  N  T  C  L  L  T  V :   F  *  A  E  V  L  H  C  Q  Y  G  H  H  F  A  W  N  F  N  *  E  E  N  F  N  S  L  *  C  L  L  R  H  *  T  M  R  I  *  T  K  M  S  R  S  A  N  M  L  S  E  V  S  C  T  F  E  L  L  S  F  R  R  K  A  K  R :   S  S  S  P  M  L  V  T  P  M  P  L  G  R  N  H  *  H  F  H  A  R :   S  L  L  S  V  K  L  H  F  Y  W  M  I  R  M  W  D  S  Y  S  L  L  M  Q  L  Q  E  P  N  S  F  L  G  *  L  L  E  V  *  :  V  L  I  V  T  P  E  A  F  L  V  *  G  K  K  L  Q  N  S  L  R  D  V  M  D  I  Q   : V  I  Q  N  S  Y  F  S  Q  M  V  P  A  K  E  *  C  R  S  *  T  V  S  F  A  A  Q  V  M  G :   Y  W  Y  L  F  P  S  I  H  Y  T  Q  L  Q  Y  N  Y  W  G  V  L  L  F  L  T  T  L  K  R  L  Q  T  G  V  L  I  S  M  T  F  A  N  Q  L  H  R  H  D  T  R  E  *  L :   Y  E  L  W  *  L  *  T  L  E  I  P  L  D  N  V  L  V  W  Q  I  L  S  K  L  F  N  S  V  T  K  K  I  *  Y  Y  L  E  T  K  F  I  S  K  T  F  T  K  M  S  A  P  S  *  V  Q  E  R :   F  Y  W  I  W  D  Y  H  *  A  R  R  F  S  L  S  R  F  T  L  S  P  K  D  I  G  V  N  V  D  S  V  E  D  T  L  R  *  P  T  F  L  P  R :   L  L  K  K  Y  T  R  L  L  Q  F  H  S  V  Q  M  Y  L  D  R  Y  L :   W  G  S  W  *  T  P  L  N  L  E  I  S  H  M  T  N  M  S  E  R   : V  R  V  S  S  S  H  *  G  R  G  H  T  *  *  L  M  V  S  T  A  A  E  M  L  F  V  I  S  Q  K  :  V  Q  C  I  P  S  R  K  Y  D  C  L  L  K  Q  *  R  L  Q  I  S  L  G  K  L  L  M  F  S  I  V  *  G  C  W  K  Q  L  A  S  P  P  S  L  V  Q  V  S  V  K  R  K   : G  C  S  I  *  G  Q  P  S  C  Q  L  K  K  T  C  Q  Q  *  W  K  V  S  K  S  S  M  M  N  S  W  R  N  M  K  T  T  K  V  I  P  G  C  N  R  K  K  M  V  G  A  F  I  V  Y  V  F  T  L  Q  L  L  Q  L  F  S  Q  T  N  Y  C  T  L  L  D  L  F  S  P  L  F  N  F  H  L  C  V  Y  I  Y  I  Y  I  Y  I  *  L  A  R  F   : R  K  K  G  *  K  L </first_frame>
            <second_frame>  G  F  I  L  E  F  M  S  S  H  L  A  T  Y  T  N  N  N  I  L  *  L  S  P  F  P  L  H  P  N  K  K  *  I  E  L  L  T  H  H  S  P  N  *  L  T  T  L  A  S  *  L   : C  F  E  P  R  C  Y  I  A  S  T  G  I  T  L  L  G  I  L  T  K  R  K  I  L  I  P  Y  N  V  F  *  G  I  R  L  *  E  S  E  R  K  C  Q  E  V  P  I  C  C  Q  R  *  A  V  P  S  S  F  *  A  S  E  G  R  Q  K   : D  H  L  H  Q  C  W  *  P  P  C  P  W  A  E  T  T  D  I  S  T  P   : G  H  C  S  L  S  S  S  I  F  T  G  *  S  E  C  G  T  H  I  P  C  *  C  N  C  K  S  Q  T  V  S  W  D  D  F  W  R  S  R :   C  L  *  *  L  P  R  H  S  W  C  K  E  R  S  C  R  I  H  *  E  T  *  W  I  S  K  :  *  S  R  T  H  I  S  H  R  W  C  Q  Q  R  S  D  A  D  L  E  Q  Y  H  S  R  P  K  *  W   : D  I  G  T  C  S  P  V  S  T  I  L  S  F  N  T  I  I  G  G  F  S  C  S  L  L  P  *  R  D  C  K  L  G  S  *  Y  Q  *  P  S  P  I  S  C  T  G  T  I  Q  G  N  N   : C  T  S  Y  G  D  Y  K  P  W  K  S  H  W  T  M  S  *  C  G  K  S  *  A  N  Y  S  I  L  S  P  R  K  F  S  I  T  W  R  R  S  L  S  A  K  H  L  P  R  *  A  P  L  H  K  C  K  K   : G  F  I  G  Y  G  T  T  I  K  Q  G  G  S  A  C  L  V  S  H  C  L  Q  R  I  L  G  *  M  W  T  A  W  R  I  L  *  D  D  Q  H  S  S  Q   : G  C  *  R  N  I  Q  G  C  F  N  F  T  Q  S  K  C  T  W  T  D  I   : Y  G  A  H  G  E  P  P  *  T  W  R  Y  L  I  *  P  I  C  Q  R  E  :  *  G  Y  P  R  V  I  K  E  E  G  T  H  D  D  *  W  F  Q  Q  L  Q  K  C  C  L  *  F  H  R  R :   C  N  V  F  L  P  A  N  T  I  A  S  *  S  N  R  D  C  K  *  A  W  E  S  S  *  C  S  L  L  S  E  A  V  G  S  N  W  H  L  H  R  P  W  F  R  F  R  S  K  G  R  :  G  V  P  S  K  D  N  H  L  A  S  *  R  R  H  A  S  N  N  G  K  F  Q  K  V  Q  *  *  I  H  G  E  I  *  R  P  Q  R  L  F  Q  D  V  I  E  K  R  W  L  E  H  L  L  Y  M  F  L  P  C  N  Y  C  N  F  F  H  K  Q  I  I  V  H  Y  L  I  S  S  P  L  F  L  T  F  I  Y  V  F  I  Y  I  Y  I  Y  I  Y  D  L  L  D  L  :  E  K  K  G  K  S   </second_frame>
            <third_frame>   V  S  S  W  N  L  C  L  H  T  W  P  H  I  Q  I  I  I  Y  Y  N  Y  P  L  F  L  Y  T  P  I  K  N  K  L  N  F  S  L  T  I  H  Q  T  D  S  Q  H  L  P  P  N  C  :  V  L  S  R  G  A  T  L  P  V  R  A  S  L  C  L  E  F  *  L  R  G  K  F  *  F  L  I  M  S  S  K  A  L  D  Y  E  N  L  N  E  N  V  K  K  C  Q  Y  A  V  R  G  E  L  Y  L  R  A  S  E  L  Q  K  E  G  K  K  :  I  I  F  T  N  V  G  N  P  H  A  L  G  Q  K  P  L  T  F  P  R  Q  :  V  I  A  L  C  Q  A  P  F  L  L  D  D  P  N  V  G  L  I  F  P  A  D  A  I  A  R  A  K  Q  F  L  G  M  T  S  G  G  L   : G  A  Y  S  D  S  R  G  I  P  G  V  R  K  E  V  A  E  F  I  E  R  R  D  G  Y  P  S :   D  P  E  L  I  F  L  T  D  G  A  S  K  G  V  M  Q  I  L  N  S  I  I  R  G  P  S  D  G  :  I  L  V  P  V  P  Q  Y  P  L  Y  S  A  S  I  Q  L  L  G  G  S  L  V  P  Y  Y  L  E  E  T  A  N  W  G  L  D  I  N  D  L  R  Q  S  V  A  Q  A  R  Y  K  G  I  T  :  V  R  A  M  V  I  I  N  P  G  N  P  T  G  Q  C  L  S  V  A  N  L  K  Q  I  I  Q  F  C  H  Q  E  N  L  V  L  L  G  D  E  V  Y  Q  Q  N  I  Y  Q  D  E  R  P  F  I  S  A  R  K  :  V  L  L  D  M  G  L  P  L  S  K  E  V  Q  L  V  S  F  H  T  V  S  K  G  Y  W  G  E  C  G  Q  R  G  G  Y  F  E  M  T  N  I  P  P  K  :  A  V  E  E  I  Y  K  V  A  S  I  S  L  S  P  N  V  P  G  Q  I  F  :  M  G  L  M  V  N  P  P  K  P  G  D  I  S  Y  D  Q  Y  V  R  E  S :   K  G  I  L  E  S  L  R  K  R  A  H  M  M  T  D  G  F  N  S  C  R  N  V  V  C  N  F  T  E   : G  A  M  Y  S  F  P  Q  I  R  L  P  P  K  A  I  E  T  A  N  K  L  G  K  A  P  D  V  L  Y  C  L  R  L  L  E  A  T  G  I  S  T  V  P  G  S  G  F  G  Q  K  E  G :   V  F  H  L  R  T  T  I  L  P  A  E  E  D  M  P  A  I  M  E  S  F  K  K  F  N  D  E  F  M  E  K  Y  E  D  H  K  G  Y  S  R  M  *  *  K  K  D  G  W  S  I  Y  C  I  C  F  Y  L  A  T  T  A  T  F  F  T  N  K  L  L  Y  T  T  *  S  L  L  P  S  F  *  L  S  S  M  C  L  Y  I  Y  I  Y  I  Y  M  T  C  *  I  * :   K  K  R  V  K  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81352" stop="81227"/>
                    <exon start="80685" stop="80620"/>
                    <exon start="80532" stop="80415"/>
                    <exon start="79842" stop="79761"/>
                    <exon start="79671" stop="79584"/>
                    <exon start="79435" stop="79277"/>
                    <exon start="78841" stop="78668"/>
                    <exon start="78574" stop="78443"/>
                    <exon start="77083" stop="77018"/>
                    <exon start="76903" stop="76839"/>
                    <exon start="76139" stop="76048"/>
                    <exon start="75971" stop="75815"/>
                    <exon start="75561" stop="75432"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1452</number_coding_nucleotides>
                  <number_encoded_amino_acids>484</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLIMSSKALDYENLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVIALCQAPFLLDDPNVGLIFPADAIARAKQFLGMTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNSIIRGPSDGILVPVPQYPLYSASIQLLGGSLVPYYLEETANWGLDINDLRQSVAQARYKGITVRAMVIINPGNPTGQCLSVANLKQIIQFCHQENLVLLGDEVYQQNIYQDERPFISARKVLLDMGLPLSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKAVEEIYKVASISLSPNVPGQIFMGLMVNPPKPGDISYDQYVRESKGILESLRKRAHMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIETANKLGKAPDVLYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEKYEDHKGYSRM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75459" stop="75262"/>
                    <exon start="75006" stop="74989"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPQRLFQDVIEKRWLEHLLYMFLPCNYCNFFHKQIIVHYLISSPLFLTFIYVFIYIYIYIYDLLDLEKKGKS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83358" stop="83203"/>
                    <exon start="81427" stop="81371"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSSWNLCLHTWPHIQIIIYYNYPLFLYTPIKNKLNFSLTIHQTDSQHLPPNCVLSRGATLPVRASLCLEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83159" e_stop="83094"/>
            <exon e_start="81427" e_stop="81227"/>
            <exon e_start="80685" e_stop="80620"/>
            <exon e_start="80532" e_stop="80415"/>
            <exon e_start="79842" e_stop="79761"/>
            <exon e_start="79671" e_stop="79584"/>
            <exon e_start="79435" e_stop="79277"/>
            <exon e_start="78841" e_stop="78668"/>
            <exon e_start="78574" e_stop="78443"/>
            <exon e_start="77083" e_stop="77018"/>
            <exon e_start="76903" e_stop="76839"/>
            <exon e_start="76139" e_stop="76048"/>
            <exon e_start="75971" e_stop="75815"/>
            <exon e_start="75561" e_stop="75262"/>
            <exon e_start="75006" e_stop="74987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.970"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.482" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.403" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="83159" e_stop="83094" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83093" i_stop="81428" i_length="1666"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81427" e_stop="81227" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80685" e_stop="80620" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80532" e_stop="80415" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.897">
            <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79842" e_stop="79761" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.732" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79760" i_stop="79672" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79671" e_stop="79584" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.883" acc_prob="0.482">
            <gDNA_intron_boundary i_start="79583" i_stop="79436" i_length="148"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79435" e_stop="79277" e_length="159"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="79276" i_stop="78842" i_length="435"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="78841" e_stop="78668" e_length="174"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.889">
            <gDNA_intron_boundary i_start="78667" i_stop="78575" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="78574" e_stop="78443" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="77083" e_stop="77018" e_length="66"/>
          </exon>
          <intron i_serial="10" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="76903" e_stop="76839" e_length="65"/>
          </exon>
          <intron i_serial="11" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76838" i_stop="76140" i_length="699"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="76139" e_stop="76048" e_length="92"/>
          </exon>
          <intron i_serial="12" don_prob="0.980" acc_prob="0.403">
            <gDNA_intron_boundary i_start="76047" i_stop="75972" i_length="76"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="75971" e_stop="75815" e_length="157"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="75561" e_stop="75262" e_length="300"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="75261" i_stop="75007" i_length="255"/>
          </intron>
          <exon e_serial="15" e_score="0.700">
            <gDNA_exon_boundary e_start="75006" e_stop="74987" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83159" stop="83094"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81406" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81403" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81319" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81319" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81316" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266648" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80459" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78443"/>
              <exon start="77083" stop="77028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80441" stop="80415"/>
              <exon start="79842" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79840" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79807" stop="79761"/>
              <exon start="79671" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79637" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79634" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79593" stop="79584"/>
              <exon start="79435" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79353" stop="79277"/>
              <exon start="78841" stop="78668"/>
              <exon start="78574" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78827" stop="78668"/>
              <exon start="78574" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78762" stop="78668"/>
              <exon start="78574" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78524" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78504" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76885" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76094" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76080" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76060" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75970" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75940" stop="75815"/>
              <exon start="75561" stop="75318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75913" stop="75815"/>
              <exon start="75561" stop="75341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75848" stop="75815"/>
              <exon start="75561" stop="75318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75540" stop="75267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281097" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75513" stop="75262"/>
              <exon start="75006" stop="74987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281144" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGT : GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG : ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG : GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG : GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATGGATATCCAAG : TGATCCAGAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGG : ATATTGGTACCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGGGGTCTTGATATCAATGACCTTCGCCAATCAGTTGCACAGGCACGATACAAGGGAATAACT : GTACGAGCTATGGTGATTATAAACCCTGGAAATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATTATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAG : GTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAG : GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT : ATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG : TAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAG : GTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG : GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTCTCCCCTCTTTTTAACTTTCATCTATGTGTTTATATATATATATATATATATATATGACTTGCTAGATTTA : GAAAAAAAGGGTAAAAGCTC</gDNA_template>
            <first_frame> A  Y  S  L  C  V  L  I  G  S  I  *  Y  I  D  F  L  F  H  L  L  C  :  V  L  S  R  G  A  T  L  P  V  R  A  S  L  C  L  E  F  *  L  R  G  K  F  *  F  L  I  M  S  S  K  A  L  D  Y  E  N  L  N  E  N  V  K  K  C  Q  Y  A  V  R  G  E  L  Y  L  R  A  S  E  L  Q  K  E  G  K  K  :  I  I  F  T  N  V  G  N  P  H  A  L  G  Q  K  P  L  T  F  P  R  Q  :  V  I  A  L  C  Q  A  P  F  L  L  D  D  P  N  V  G  L  I  F  P  A  D  A  I  A  R  A  K  Q  F  L  G  M  T  S  G  G  L   : G  A  Y  S  D  S  R  G  I  P  G  V  R  K  E  V  A  E  F  I  E  R  R  D  G  Y  P  S :   D  P  E  L  I  F  L  T  D  G  A  S  K  G  V  M  Q  I  L  N  S  I  I  R  G  P  S  D  G  :  I  L  V  P  V  P  Q  Y  P  L  Y  S  A  S  I  Q  L  L  G  G  S  L  V  P  Y  Y  L  E  E  T  A  N  W  G  L  D  I  N  D  L  R  Q  S  V  A  Q  A  R  Y  K  G  I  T  :  V  R  A  M  V  I  I  N  P  G  N  P  T  G  Q  C  L  S  V  A  N  L  K  Q  I  I  Q  F  C  H  Q  E  N  L  V  L  L  G  D  E  V  Y  Q  Q  N  I  Y  Q  D  E  R  P  F  I  S  A  R  K  :  V  L  L  D  M  G  L  P  L  S  K  E  V  Q  L  V  S  F  H  T  V  S  K  G  Y  W  G  E  C  G  Q  R  G  G  Y  F  E  M  T  N  I  P  P  K  :  A  V  E  E  I  Y  K  V  A  S  I  S  L  S  P  N  V  P  G  Q  I  F  :  M  G  L  M  V  N  P  P  K  P  G  D  I  S  Y  D  Q  Y  V  R  E  S :   K  G  I  L  E  S  L  R  K  R  A  H  M  M  T  D  G  F  N  S  C  R  N  V  V  C  N  F  T  E   : G  A  M  Y  S  F  P  Q  I  R  L  P  P  K  A  I  E  T  A  N  K  L  G  K  A  P  D  V  L  Y  C  L  R  L  L  E  A  T  G  I  S  T  V  P  G  S  G  F  G  Q  K  E  G :   V  F  H  L  R  T  T  I  L  P  A  E  E  D  M  P  A  I  M  E  S  F  K  K  F  N  D  E  F  M  E  K  Y  E  D  H  K  G  Y  S  R  M  *  *  K  K  D  G  W  S  I  Y  C  I  C  F  Y  L  A  T  T  A  T  F  F  T  N  K  L  L  Y  T  T  *  S  L  L  P  S  F  *  L  S  S  M  C  L  Y  I  Y  I  Y  I  Y  M  T  C  *  I  * :   K  K  R  V  K  A  </first_frame>
            <second_frame>  H  I  L  C  V  F  *  L  D  R  Y  N  I  *  I  F  S  F  I  C  Y  V :   F  *  A  E  V  L  H  C  Q  Y  G  H  H  F  A  W  N  F  N  *  E  E  N  F  N  S  L  *  C  L  L  R  H  *  T  M  R  I  *  T  K  M  S  R  S  A  N  M  L  S  E  V  S  C  T  F  E  L  L  S  F  R  R  K  A  K  R :   S  S  S  P  M  L  V  T  P  M  P  L  G  R  N  H  *  H  F  H  A  R :   S  L  L  S  V  K  L  H  F  Y  W  M  I  R  M  W  D  S  Y  S  L  L  M  Q  L  Q  E  P  N  S  F  L  G  *  L  L  E  V  *  :  V  L  I  V  T  P  E  A  F  L  V  *  G  K  K  L  Q  N  S  L  R  D  V  M  D  I  Q   : V  I  Q  N  S  Y  F  S  Q  M  V  P  A  K  E  *  C  R  S  *  T  V  S  F  A  A  Q  V  M  G :   Y  W  Y  L  F  P  S  I  H  Y  T  Q  L  Q  Y  N  Y  W  G  V  L  L  F  L  T  T  L  K  R  L  Q  T  G  V  L  I  S  M  T  F  A  N  Q  L  H  R  H  D  T  R  E  *  L :   Y  E  L  W  *  L  *  T  L  E  I  P  L  D  N  V  L  V  W  Q  I  L  S  K  L  F  N  S  V  T  K  K  I  *  Y  Y  L  E  T  K  F  I  S  K  T  F  T  K  M  S  A  P  S  *  V  Q  E  R :   F  Y  W  I  W  D  Y  H  *  A  R  R  F  S  L  S  R  F  T  L  S  P  K  D  I  G  V  N  V  D  S  V  E  D  T  L  R  *  P  T  F  L  P  R :   L  L  K  K  Y  T  R  L  L  Q  F  H  S  V  Q  M  Y  L  D  R  Y  L :   W  G  S  W  *  T  P  L  N  L  E  I  S  H  M  T  N  M  S  E  R   : V  R  V  S  S  S  H  *  G  R  G  H  T  *  *  L  M  V  S  T  A  A  E  M  L  F  V  I  S  Q  K  :  V  Q  C  I  P  S  R  K  Y  D  C  L  L  K  Q  *  R  L  Q  I  S  L  G  K  L  L  M  F  S  I  V  *  G  C  W  K  Q  L  A  S  P  P  S  L  V  Q  V  S  V  K  R  K   : G  C  S  I  *  G  Q  P  S  C  Q  L  K  K  T  C  Q  Q  *  W  K  V  S  K  S  S  M  M  N  S  W  R  N  M  K  T  T  K  V  I  P  G  C  N  R  K  K  M  V  G  A  F  I  V  Y  V  F  T  L  Q  L  L  Q  L  F  S  Q  T  N  Y  C  T  L  L  D  L  F  S  P  L  F  N  F  H  L  C  V  Y  I  Y  I  Y  I  Y  I  *  L  A  R  F   : R  K  K  G  *  K  L </second_frame>
            <third_frame>   I  F  F  V  C  F  N  W  I  D  I  I  Y  R  F  S  L  S  S  A  M   : C  F  E  P  R  C  Y  I  A  S  T  G  I  T  L  L  G  I  L  T  K  R  K  I  L  I  P  Y  N  V  F  *  G  I  R  L  *  E  S  E  R  K  C  Q  E  V  P  I  C  C  Q  R  *  A  V  P  S  S  F  *  A  S  E  G  R  Q  K   : D  H  L  H  Q  C  W  *  P  P  C  P  W  A  E  T  T  D  I  S  T  P   : G  H  C  S  L  S  S  S  I  F  T  G  *  S  E  C  G  T  H  I  P  C  *  C  N  C  K  S  Q  T  V  S  W  D  D  F  W  R  S  R :   C  L  *  *  L  P  R  H  S  W  C  K  E  R  S  C  R  I  H  *  E  T  *  W  I  S  K  :  *  S  R  T  H  I  S  H  R  W  C  Q  Q  R  S  D  A  D  L  E  Q  Y  H  S  R  P  K  *  W   : D  I  G  T  C  S  P  V  S  T  I  L  S  F  N  T  I  I  G  G  F  S  C  S  L  L  P  *  R  D  C  K  L  G  S  *  Y  Q  *  P  S  P  I  S  C  T  G  T  I  Q  G  N  N   : C  T  S  Y  G  D  Y  K  P  W  K  S  H  W  T  M  S  *  C  G  K  S  *  A  N  Y  S  I  L  S  P  R  K  F  S  I  T  W  R  R  S  L  S  A  K  H  L  P  R  *  A  P  L  H  K  C  K  K   : G  F  I  G  Y  G  T  T  I  K  Q  G  G  S  A  C  L  V  S  H  C  L  Q  R  I  L  G  *  M  W  T  A  W  R  I  L  *  D  D  Q  H  S  S  Q   : G  C  *  R  N  I  Q  G  C  F  N  F  T  Q  S  K  C  T  W  T  D  I   : Y  G  A  H  G  E  P  P  *  T  W  R  Y  L  I  *  P  I  C  Q  R  E  :  *  G  Y  P  R  V  I  K  E  E  G  T  H  D  D  *  W  F  Q  Q  L  Q  K  C  C  L  *  F  H  R  R :   C  N  V  F  L  P  A  N  T  I  A  S  *  S  N  R  D  C  K  *  A  W  E  S  S  *  C  S  L  L  S  E  A  V  G  S  N  W  H  L  H  R  P  W  F  R  F  R  S  K  G  R  :  G  V  P  S  K  D  N  H  L  A  S  *  R  R  H  A  S  N  N  G  K  F  Q  K  V  Q  *  *  I  H  G  E  I  *  R  P  Q  R  L  F  Q  D  V  I  E  K  R  W  L  E  H  L  L  Y  M  F  L  P  C  N  Y  C  N  F  F  H  K  Q  I  I  V  H  Y  L  I  S  S  P  L  F  L  T  F  I  Y  V  F  I  Y  I  Y  I  Y  I  Y  D  L  L  D  L  :  E  K  K  G  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81352" stop="81227"/>
                    <exon start="80685" stop="80620"/>
                    <exon start="80532" stop="80415"/>
                    <exon start="79842" stop="79761"/>
                    <exon start="79671" stop="79584"/>
                    <exon start="79435" stop="79277"/>
                    <exon start="78841" stop="78668"/>
                    <exon start="78574" stop="78443"/>
                    <exon start="77083" stop="77018"/>
                    <exon start="76903" stop="76839"/>
                    <exon start="76139" stop="76048"/>
                    <exon start="75971" stop="75815"/>
                    <exon start="75561" stop="75432"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1452</number_coding_nucleotides>
                  <number_encoded_amino_acids>484</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLIMSSKALDYENLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVIALCQAPFLLDDPNVGLIFPADAIARAKQFLGMTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNSIIRGPSDGILVPVPQYPLYSASIQLLGGSLVPYYLEETANWGLDINDLRQSVAQARYKGITVRAMVIINPGNPTGQCLSVANLKQIIQFCHQENLVLLGDEVYQQNIYQDERPFISARKVLLDMGLPLSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKAVEEIYKVASISLSPNVPGQIFMGLMVNPPKPGDISYDQYVRESKGILESLRKRAHMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIETANKLGKAPDVLYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEKYEDHKGYSRM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75459" stop="75262"/>
                    <exon start="75006" stop="74989"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPQRLFQDVIEKRWLEHLLYMFLPCNYCNFFHKQIIVHYLISSPLFLTFIYVFIYIYIYIYDLLDLEKKGKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="83360" e_stop="83203"/>
            <exon e_start="81427" e_stop="81227"/>
            <exon e_start="80685" e_stop="80620"/>
            <exon e_start="80532" e_stop="80415"/>
            <exon e_start="79842" e_stop="79771"/>
            <exon e_start="78474" e_stop="78443"/>
            <exon e_start="77083" e_stop="77018"/>
            <exon e_start="76903" e_stop="76839"/>
            <exon e_start="76139" e_stop="76048"/>
            <exon e_start="75971" e_stop="75815"/>
            <exon e_start="75561" e_stop="75262"/>
            <exon e_start="75006" e_stop="74987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.403" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="83360" e_stop="83203" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81427" e_stop="81227" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80685" e_stop="80620" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80532" e_stop="80415" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.897">
            <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79842" e_stop="79771" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79770" i_stop="78475" i_length="1296"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78474" e_stop="78443" e_length="32"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77083" e_stop="77018" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="76903" e_stop="76839" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76838" i_stop="76140" i_length="699"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="76139" e_stop="76048" e_length="92"/>
          </exon>
          <intron i_serial="9" don_prob="0.980" acc_prob="0.403">
            <gDNA_intron_boundary i_start="76047" i_stop="75972" i_length="76"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="75971" e_stop="75815" e_length="157"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="75561" e_stop="75262" e_length="300"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="75261" i_stop="75007" i_length="255"/>
          </intron>
          <exon e_serial="12" e_score="0.700">
            <gDNA_exon_boundary e_start="75006" e_stop="74987" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83360" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83263" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83262" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83237" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83237" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83237" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83236" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83222" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83222" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81422" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79771"/>
              <exon start="78474" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81422" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79771"/>
              <exon start="78474" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81421" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79771"/>
              <exon start="78474" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81316" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266648" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76885" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76094" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76080" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76060" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75970" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75940" stop="75815"/>
              <exon start="75561" stop="75318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75913" stop="75815"/>
              <exon start="75561" stop="75341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75848" stop="75815"/>
              <exon start="75561" stop="75318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75540" stop="75267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281097" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75513" stop="75262"/>
              <exon start="75006" stop="74987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281144" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTTTCATCTTGGAATTTATGTCTTCACACTTGGCCACATATACAAATAATAATATACTATAATTATCCCCTTTTCCTTTACACCCCAATAAAAAATAAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT : GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG : ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG : GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG : GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGTAAGGAAAGAAGTTGCAGAATTCATTGAGAGACGTGATG : GATACTTTGAGATGACCAACATTCCTCCCAAG : GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT : ATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG : TAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAG : GTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG : GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTCTCCCCTCTTTTTAACTTTCATCTATGTGTTTATATATATATATATATATATATATGACTTGCTAGATTTA : GAAAAAAAGGGTAAAAGCTC</gDNA_template>
            <first_frame> W  F  H  L  G  I  Y  V  F  T  L  G  H  I  Y  K  *  *  Y  T  I  I  I  P  F  S  F  T  P  Q  *  K  I  N  *  T  S  H  S  P  F  T  K  L  T  H  N  T  C  L  L  T  V :   F  *  A  E  V  L  H  C  Q  Y  G  H  H  F  A  W  N  F  N  *  E  E  N  F  N  S  L  *  C  L  L  R  H  *  T  M  R  I  *  T  K  M  S  R  S  A  N  M  L  S  E  V  S  C  T  F  E  L  L  S  F  R  R  K  A  K  R :   S  S  S  P  M  L  V  T  P  M  P  L  G  R  N  H  *  H  F  H  A  R :   S  L  L  S  V  K  L  H  F  Y  W  M  I  R  M  W  D  S  Y  S  L  L  M  Q  L  Q  E  P  N  S  F  L  G  *  L  L  E  V  *  :  V  L  I  V  T  P  E  A  F  L  V  *  G  K  K  L  Q  N  S  L  R  D  V  M  :  D  T  L  R  *  P  T  F  L  P  R :   L  L  K  K  Y  T  R  L  L  Q  F  H  S  V  Q  M  Y  L  D  R  Y  L :   W  G  S  W  *  T  P  L  N  L  E  I  S  H  M  T  N  M  S  E  R   : V  R  V  S  S  S  H  *  G  R  G  H  T  *  *  L  M  V  S  T  A  A  E  M  L  F  V  I  S  Q  K  :  V  Q  C  I  P  S  R  K  Y  D  C  L  L  K  Q  *  R  L  Q  I  S  L  G  K  L  L  M  F  S  I  V  *  G  C  W  K  Q  L  A  S  P  P  S  L  V  Q  V  S  V  K  R  K   : G  C  S  I  *  G  Q  P  S  C  Q  L  K  K  T  C  Q  Q  *  W  K  V  S  K  S  S  M  M  N  S  W  R  N  M  K  T  T  K  V  I  P  G  C  N  R  K  K  M  V  G  A  F  I  V  Y  V  F  T  L  Q  L  L  Q  L  F  S  Q  T  N  Y  C  T  L  L  D  L  F  S  P  L  F  N  F  H  L  C  V  Y  I  Y  I  Y  I  Y  I  *  L  A  R  F   : R  K  K  G  *  K  L </first_frame>
            <second_frame>  G  F  I  L  E  F  M  S  S  H  L  A  T  Y  T  N  N  N  I  L  *  L  S  P  F  P  L  H  P  N  K  K  *  I  E  L  L  T  H  H  S  P  N  *  L  T  T  L  A  S  *  L   : C  F  E  P  R  C  Y  I  A  S  T  G  I  T  L  L  G  I  L  T  K  R  K  I  L  I  P  Y  N  V  F  *  G  I  R  L  *  E  S  E  R  K  C  Q  E  V  P  I  C  C  Q  R  *  A  V  P  S  S  F  *  A  S  E  G  R  Q  K   : D  H  L  H  Q  C  W  *  P  P  C  P  W  A  E  T  T  D  I  S  T  P   : G  H  C  S  L  S  S  S  I  F  T  G  *  S  E  C  G  T  H  I  P  C  *  C  N  C  K  S  Q  T  V  S  W  D  D  F  W  R  S  R :   C  L  *  *  L  P  R  H  S  W  C  K  E  R  S  C  R  I  H  *  E  T  *  W :   I  L  *  D  D  Q  H  S  S  Q   : G  C  *  R  N  I  Q  G  C  F  N  F  T  Q  S  K  C  T  W  T  D  I   : Y  G  A  H  G  E  P  P  *  T  W  R  Y  L  I  *  P  I  C  Q  R  E  :  *  G  Y  P  R  V  I  K  E  E  G  T  H  D  D  *  W  F  Q  Q  L  Q  K  C  C  L  *  F  H  R  R :   C  N  V  F  L  P  A  N  T  I  A  S  *  S  N  R  D  C  K  *  A  W  E  S  S  *  C  S  L  L  S  E  A  V  G  S  N  W  H  L  H  R  P  W  F  R  F  R  S  K  G  R  :  G  V  P  S  K  D  N  H  L  A  S  *  R  R  H  A  S  N  N  G  K  F  Q  K  V  Q  *  *  I  H  G  E  I  *  R  P  Q  R  L  F  Q  D  V  I  E  K  R  W  L  E  H  L  L  Y  M  F  L  P  C  N  Y  C  N  F  F  H  K  Q  I  I  V  H  Y  L  I  S  S  P  L  F  L  T  F  I  Y  V  F  I  Y  I  Y  I  Y  I  Y  D  L  L  D  L  :  E  K  K  G  K  S   </second_frame>
            <third_frame>   V  S  S  W  N  L  C  L  H  T  W  P  H  I  Q  I  I  I  Y  Y  N  Y  P  L  F  L  Y  T  P  I  K  N  K  L  N  F  S  L  T  I  H  Q  T  D  S  Q  H  L  P  P  N  C  :  V  L  S  R  G  A  T  L  P  V  R  A  S  L  C  L  E  F  *  L  R  G  K  F  *  F  L  I  M  S  S  K  A  L  D  Y  E  N  L  N  E  N  V  K  K  C  Q  Y  A  V  R  G  E  L  Y  L  R  A  S  E  L  Q  K  E  G  K  K  :  I  I  F  T  N  V  G  N  P  H  A  L  G  Q  K  P  L  T  F  P  R  Q  :  V  I  A  L  C  Q  A  P  F  L  L  D  D  P  N  V  G  L  I  F  P  A  D  A  I  A  R  A  K  Q  F  L  G  M  T  S  G  G  L   : G  A  Y  S  D  S  R  G  I  P  G  V  R  K  E  V  A  E  F  I  E  R  R  D   : G  Y  F  E  M  T  N  I  P  P  K  :  A  V  E  E  I  Y  K  V  A  S  I  S  L  S  P  N  V  P  G  Q  I  F  :  M  G  L  M  V  N  P  P  K  P  G  D  I  S  Y  D  Q  Y  V  R  E  S :   K  G  I  L  E  S  L  R  K  R  A  H  M  M  T  D  G  F  N  S  C  R  N  V  V  C  N  F  T  E   : G  A  M  Y  S  F  P  Q  I  R  L  P  P  K  A  I  E  T  A  N  K  L  G  K  A  P  D  V  L  Y  C  L  R  L  L  E  A  T  G  I  S  T  V  P  G  S  G  F  G  Q  K  E  G :   V  F  H  L  R  T  T  I  L  P  A  E  E  D  M  P  A  I  M  E  S  F  K  K  F  N  D  E  F  M  E  K  Y  E  D  H  K  G  Y  S  R  M  *  *  K  K  D  G  W  S  I  Y  C  I  C  F  Y  L  A  T  T  A  T  F  F  T  N  K  L  L  Y  T  T  *  S  L  L  P  S  F  *  L  S  S  M  C  L  Y  I  Y  I  Y  I  Y  M  T  C  *  I  * :   K  K  R  V  K  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81352" stop="81227"/>
                    <exon start="80685" stop="80620"/>
                    <exon start="80532" stop="80415"/>
                    <exon start="79842" stop="79771"/>
                    <exon start="78474" stop="78443"/>
                    <exon start="77083" stop="77018"/>
                    <exon start="76903" stop="76839"/>
                    <exon start="76139" stop="76048"/>
                    <exon start="75971" stop="75815"/>
                    <exon start="75561" stop="75432"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLIMSSKALDYENLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVIALCQAPFLLDDPNVGLIFPADAIARAKQFLGMTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYFEMTNIPPKAVEEIYKVASISLSPNVPGQIFMGLMVNPPKPGDISYDQYVRESKGILESLRKRAHMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIETANKLGKAPDVLYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEKYEDHKGYSRM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75459" stop="75262"/>
                    <exon start="75006" stop="74989"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPQRLFQDVIEKRWLEHLLYMFLPCNYCNFFHKQIIVHYLISSPLFLTFIYVFIYIYIYIYDLLDLEKKGKS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83358" stop="83203"/>
                    <exon start="81427" stop="81371"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSSWNLCLHTWPHIQIIIYYNYPLFLYTPIKNKLNFSLTIHQTDSQHLPPNCVLSRGATLPVRASLCLEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="83266" e_stop="83203"/>
            <exon e_start="81427" e_stop="81227"/>
            <exon e_start="80685" e_stop="80620"/>
            <exon e_start="80532" e_stop="80453"/>
            <exon e_start="78747" e_stop="78668"/>
            <exon e_start="78574" e_stop="78443"/>
            <exon e_start="77083" e_stop="77018"/>
            <exon e_start="76903" e_stop="76839"/>
            <exon e_start="76139" e_stop="76048"/>
            <exon e_start="75971" e_stop="75815"/>
            <exon e_start="75561" e_stop="75262"/>
            <exon e_start="75006" e_stop="74987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.953"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.403" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="83266" e_stop="83203" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81427" e_stop="81227" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80685" e_stop="80620" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80532" e_stop="80453" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80452" i_stop="78748" i_length="1705"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78747" e_stop="78668" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.889">
            <gDNA_intron_boundary i_start="78667" i_stop="78575" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78574" e_stop="78443" e_length="132"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="78442" i_stop="77084" i_length="1359"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77083" e_stop="77018" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="77017" i_stop="76904" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="76903" e_stop="76839" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76838" i_stop="76140" i_length="699"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="76139" e_stop="76048" e_length="92"/>
          </exon>
          <intron i_serial="9" don_prob="0.980" acc_prob="0.403">
            <gDNA_intron_boundary i_start="76047" i_stop="75972" i_length="76"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="75971" e_stop="75815" e_length="157"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75814" i_stop="75562" i_length="253"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="75561" e_stop="75262" e_length="300"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="75261" i_stop="75007" i_length="255"/>
          </intron>
          <exon e_serial="12" e_score="0.700">
            <gDNA_exon_boundary e_start="75006" e_stop="74987" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83266" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80453"/>
              <exon start="78747" stop="78668"/>
              <exon start="78574" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78524" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78504" stop="78443"/>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77083" stop="77018"/>
              <exon start="76903" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76885" stop="76839"/>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76139" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76094" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76080" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76060" stop="76048"/>
              <exon start="75971" stop="75815"/>
              <exon start="75561" stop="75341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75970" stop="75815"/>
              <exon start="75561" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75940" stop="75815"/>
              <exon start="75561" stop="75318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75913" stop="75815"/>
              <exon start="75561" stop="75341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75848" stop="75815"/>
              <exon start="75561" stop="75318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75540" stop="75267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281097" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75513" stop="75262"/>
              <exon start="75006" stop="74987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281144" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT : GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG : ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG : GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAG : AAAATTTAGTATTACTTGGAGACGAAGTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAG : GTTTTATTGGATATGGGACTACCATTAAGCAAGGAGGTTCAGCTTGTCTCGTTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCTCCCAAG : GCTGTTGAAGAAATATACAAGGTTGCTTCAATTTCACTCAGTCCAAATGTACCTGGACAGATATTT : ATGGGGCTCATGGTGAACCCCCCTAAACCTGGAGATATCTCATATGACCAATATGTCAGAGAGAG : TAAGGGTATCCTCGAGTCATTAAGGAAGAGGGCACACATGATGACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAG : GTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAAAGCAATAGAGACTGCAAATAAGCTTGGGAAAGCTCCTGATGTTCTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCTGGTTCAGGTTTCGGTCAAAAGGAAGG : GGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGTTTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAAGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGCATTTATTGTATATGTTTTTACCTTGCAACTACTGCAACTTTTTTCACAAACAAATTATTGTACACTACTTGATCTCTTCTCCCCTCTTTTTAACTTTCATCTATGTGTTTATATATATATATATATATATATATGACTTGCTAGATTTA : GAAAAAAAGGGTAAAAGCTC</gDNA_template>
            <first_frame> K  *  I  E  L  L  T  H  H  S  P  N  *  L  T  T  L  A  S  *  L   : C  F  E  P  R  C  Y  I  A  S  T  G  I  T  L  L  G  I  L  T  K  R  K  I  L  I  P  Y  N  V  F  *  G  I  R  L  *  E  S  E  R  K  C  Q  E  V  P  I  C  C  Q  R  *  A  V  P  S  S  F  *  A  S  E  G  R  Q  K   : D  H  L  H  Q  C  W  *  P  P  C  P  W  A  E  T  T  D  I  S  T  P   : G  H  C  S  L  S  S  S  I  F  T  G  *  S  E  C  G  T  H  I  P  C  *  C  N  C  K  :  K  I  *  Y  Y  L  E  T  K  F  I  S  K  T  F  T  K  M  S  A  P  S  *  V  Q  E  R :   F  Y  W  I  W  D  Y  H  *  A  R  R  F  S  L  S  R  F  T  L  S  P  K  D  I  G  V  N  V  D  S  V  E  D  T  L  R  *  P  T  F  L  P  R :   L  L  K  K  Y  T  R  L  L  Q  F  H  S  V  Q  M  Y  L  D  R  Y  L :   W  G  S  W  *  T  P  L  N  L  E  I  S  H  M  T  N  M  S  E  R   : V  R  V  S  S  S  H  *  G  R  G  H  T  *  *  L  M  V  S  T  A  A  E  M  L  F  V  I  S  Q  K  :  V  Q  C  I  P  S  R  K  Y  D  C  L  L  K  Q  *  R  L  Q  I  S  L  G  K  L  L  M  F  S  I  V  *  G  C  W  K  Q  L  A  S  P  P  S  L  V  Q  V  S  V  K  R  K   : G  C  S  I  *  G  Q  P  S  C  Q  L  K  K  T  C  Q  Q  *  W  K  V  S  K  S  S  M  M  N  S  W  R  N  M  K  T  T  K  V  I  P  G  C  N  R  K  K  M  V  G  A  F  I  V  Y  V  F  T  L  Q  L  L  Q  L  F  S  Q  T  N  Y  C  T  L  L  D  L  F  S  P  L  F  N  F  H  L  C  V  Y  I  Y  I  Y  I  Y  I  *  L  A  R  F   : R  K  K  G  *  K  L </first_frame>
            <second_frame>  N  K  L  N  F  S  L  T  I  H  Q  T  D  S  Q  H  L  P  P  N  C  :  V  L  S  R  G  A  T  L  P  V  R  A  S  L  C  L  E  F  *  L  R  G  K  F  *  F  L  I  M  S  S  K  A  L  D  Y  E  N  L  N  E  N  V  K  K  C  Q  Y  A  V  R  G  E  L  Y  L  R  A  S  E  L  Q  K  E  G  K  K  :  I  I  F  T  N  V  G  N  P  H  A  L  G  Q  K  P  L  T  F  P  R  Q  :  V  I  A  L  C  Q  A  P  F  L  L  D  D  P  N  V  G  L  I  F  P  A  D  A  I  A  R :   K  F  S  I  T  W  R  R  S  L  S  A  K  H  L  P  R  *  A  P  L  H  K  C  K  K   : G  F  I  G  Y  G  T  T  I  K  Q  G  G  S  A  C  L  V  S  H  C  L  Q  R  I  L  G  *  M  W  T  A  W  R  I  L  *  D  D  Q  H  S  S  Q   : G  C  *  R  N  I  Q  G  C  F  N  F  T  Q  S  K  C  T  W  T  D  I   : Y  G  A  H  G  E  P  P  *  T  W  R  Y  L  I  *  P  I  C  Q  R  E  :  *  G  Y  P  R  V  I  K  E  E  G  T  H  D  D  *  W  F  Q  Q  L  Q  K  C  C  L  *  F  H  R  R :   C  N  V  F  L  P  A  N  T  I  A  S  *  S  N  R  D  C  K  *  A  W  E  S  S  *  C  S  L  L  S  E  A  V  G  S  N  W  H  L  H  R  P  W  F  R  F  R  S  K  G  R  :  G  V  P  S  K  D  N  H  L  A  S  *  R  R  H  A  S  N  N  G  K  F  Q  K  V  Q  *  *  I  H  G  E  I  *  R  P  Q  R  L  F  Q  D  V  I  E  K  R  W  L  E  H  L  L  Y  M  F  L  P  C  N  Y  C  N  F  F  H  K  Q  I  I  V  H  Y  L  I  S  S  P  L  F  L  T  F  I  Y  V  F  I  Y  I  Y  I  Y  I  Y  D  L  L  D  L  :  E  K  K  G  K  S   </second_frame>
            <third_frame>   I  N  *  T  S  H  S  P  F  T  K  L  T  H  N  T  C  L  L  T  V :   F  *  A  E  V  L  H  C  Q  Y  G  H  H  F  A  W  N  F  N  *  E  E  N  F  N  S  L  *  C  L  L  R  H  *  T  M  R  I  *  T  K  M  S  R  S  A  N  M  L  S  E  V  S  C  T  F  E  L  L  S  F  R  R  K  A  K  R :   S  S  S  P  M  L  V  T  P  M  P  L  G  R  N  H  *  H  F  H  A  R :   S  L  L  S  V  K  L  H  F  Y  W  M  I  R  M  W  D  S  Y  S  L  L  M  Q  L  Q   : E  N  L  V  L  L  G  D  E  V  Y  Q  Q  N  I  Y  Q  D  E  R  P  F  I  S  A  R  K  :  V  L  L  D  M  G  L  P  L  S  K  E  V  Q  L  V  S  F  H  T  V  S  K  G  Y  W  G  E  C  G  Q  R  G  G  Y  F  E  M  T  N  I  P  P  K  :  A  V  E  E  I  Y  K  V  A  S  I  S  L  S  P  N  V  P  G  Q  I  F  :  M  G  L  M  V  N  P  P  K  P  G  D  I  S  Y  D  Q  Y  V  R  E  S :   K  G  I  L  E  S  L  R  K  R  A  H  M  M  T  D  G  F  N  S  C  R  N  V  V  C  N  F  T  E   : G  A  M  Y  S  F  P  Q  I  R  L  P  P  K  A  I  E  T  A  N  K  L  G  K  A  P  D  V  L  Y  C  L  R  L  L  E  A  T  G  I  S  T  V  P  G  S  G  F  G  Q  K  E  G :   V  F  H  L  R  T  T  I  L  P  A  E  E  D  M  P  A  I  M  E  S  F  K  K  F  N  D  E  F  M  E  K  Y  E  D  H  K  G  Y  S  R  M  *  *  K  K  D  G  W  S  I  Y  C  I  C  F  Y  L  A  T  T  A  T  F  F  T  N  K  L  L  Y  T  T  *  S  L  L  P  S  F  *  L  S  S  M  C  L  Y  I  Y  I  Y  I  Y  M  T  C  *  I  * :   K  K  R  V  K  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80633" stop="80620"/>
                    <exon start="80532" stop="80453"/>
                    <exon start="78747" stop="78668"/>
                    <exon start="78574" stop="78443"/>
                    <exon start="77083" stop="77018"/>
                    <exon start="76903" stop="76839"/>
                    <exon start="76139" stop="76048"/>
                    <exon start="75971" stop="75815"/>
                    <exon start="75561" stop="75432"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFHARSLLSVKLHFYWMIRMWDSYSLLMQLQENLVLLGDEVYQQNIYQDERPFISARKVLLDMGLPLSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKAVEEIYKVASISLSPNVPGQIFMGLMVNPPKPGDISYDQYVRESKGILESLRKRAHMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIETANKLGKAPDVLYCLRLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEKYEDHKGYSRM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75459" stop="75262"/>
                    <exon start="75006" stop="74989"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPQRLFQDVIEKRWLEHLLYMFLPCNYCNFFHKQIIVHYLISSPLFLTFIYVFIYIYIYIYDLLDLEKKGKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="83253" e_stop="83203"/>
            <exon e_start="81427" e_stop="81227"/>
            <exon e_start="80685" e_stop="80620"/>
            <exon e_start="80532" e_stop="80421"/>
            <exon e_start="78474" e_stop="78203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83253" e_stop="83203" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81427" e_stop="81227" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80685" e_stop="80620" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80532" e_stop="80421" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.835" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80420" i_stop="78475" i_length="1946"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="78474" e_stop="78203" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83253" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80421"/>
              <exon start="78474" stop="78203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83237" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83236" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83222" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83222" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT : GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG : ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG : GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAG : GATACTTTGAGATGACCAACATTCCTCCCAAGGTTTGTATTTTGCTTCCATTAAAACTGTAGGGATACGAATATATTTGGTAGTTCTTGCTTATTGTGAATTGCTTATTCTCGGTGTCACATTGTATGTCATGGTTTGAATTGGAAAAACTCCAATAGTGATAGTGAAAAGTATAGTGATCTCATGACACGTTTTATTGGAGTGGTGCTATAATAGTCTTTTCTTTGTAGTGCTTATAAATGACTTATTTCACATTTTGGGGAAGTCTTAAA</gDNA_template>
            <first_frame> F  S  L  T  I  H  Q  T  D  S  Q  H  L  P  P  N  C  :  V  L  S  R  G  A  T  L  P  V  R  A  S  L  C  L  E  F  *  L  R  G  K  F  *  F  L  I  M  S  S  K  A  L  D  Y  E  N  L  N  E  N  V  K  K  C  Q  Y  A  V  R  G  E  L  Y  L  R  A  S  E  L  Q  K  E  G  K  K  :  I  I  F  T  N  V  G  N  P  H  A  L  G  Q  K  P  L  T  F  P  R  Q  :  V  I  A  L  C  Q  A  P  F  L  L  D  D  P  N  V  G  L  I  F  P  A  D  A  I  A  R  A  K  Q  F  L  G  M  T  S  G   : G  Y  F  E  M  T  N  I  P  P  K  V  C  I  L  L  P  L  K  L  *  G  Y  E  Y  I  W  *  F  L  L  I  V  N  C  L  F  S  V  S  H  C  M  S  W  F  E  L  E  K  L  Q  *  *  *  *  K  V  *  *  S  H  D  T  F  Y  W  S  G  A  I  I  V  F  S  L  *  C  L  *  M  T  Y  F  T  F  W  G  S  L  K </first_frame>
            <second_frame>  S  H  S  P  F  T  K  L  T  H  N  T  C  L  L  T  V :   F  *  A  E  V  L  H  C  Q  Y  G  H  H  F  A  W  N  F  N  *  E  E  N  F  N  S  L  *  C  L  L  R  H  *  T  M  R  I  *  T  K  M  S  R  S  A  N  M  L  S  E  V  S  C  T  F  E  L  L  S  F  R  R  K  A  K  R :   S  S  S  P  M  L  V  T  P  M  P  L  G  R  N  H  *  H  F  H  A  R :   S  L  L  S  V  K  L  H  F  Y  W  M  I  R  M  W  D  S  Y  S  L  L  M  Q  L  Q  E  P  N  S  F  L  G  *  L  L  E  :  D  T  L  R  *  P  T  F  L  P  R  F  V  F  C  F  H  *  N  C  R  D  T  N  I  F  G  S  S  C  L  L  *  I  A  Y  S  R  C  H  I  V  C  H  G  L  N  W  K  N  S  N  S  D  S  E  K  Y  S  D  L  M  T  R  F  I  G  V  V  L  *  *  S  F  L  C  S  A  Y  K  *  L  I  S  H  F  G  E  V  L   </second_frame>
            <third_frame>   L  T  H  H  S  P  N  *  L  T  T  L  A  S  *  L   : C  F  E  P  R  C  Y  I  A  S  T  G  I  T  L  L  G  I  L  T  K  R  K  I  L  I  P  Y  N  V  F  *  G  I  R  L  *  E  S  E  R  K  C  Q  E  V  P  I  C  C  Q  R  *  A  V  P  S  S  F  *  A  S  E  G  R  Q  K   : D  H  L  H  Q  C  W  *  P  P  C  P  W  A  E  T  T  D  I  S  T  P   : G  H  C  S  L  S  S  S  I  F  T  G  *  S  E  C  G  T  H  I  P  C  *  C  N  C  K  S  Q  T  V  S  W  D  D  F  W  R :   I  L  *  D  D  Q  H  S  S  Q  G  L  Y  F  A  S  I  K  T  V  G  I  R  I  Y  L  V  V  L  A  Y  C  E  L  L  I  L  G  V  T  L  Y  V  M  V  *  I  G  K  T  P  I  V  I  V  K  S  I  V  I  S  *  H  V  L  L  E  W  C  Y  N  S  L  F  F  V  V  L  I  N  D  L  F  H  I  L  G  K  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81352" stop="81227"/>
                    <exon start="80685" stop="80620"/>
                    <exon start="80532" stop="80421"/>
                    <exon start="78474" stop="78413"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLIMSSKALDYENLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVIALCQAPFLLDDPNVGLIFPADAIARAKQFLGMTSGGYFEMTNIPPKVCILLPLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="91665" PGL_stop="90804"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91665" e_stop="90804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="91665" e_stop="90804" e_length="862"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91665" stop="90805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91523" stop="91202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91244" stop="90804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91244" stop="90805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91243" stop="90813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAACTCATTGACGAGATCAAGGCTGAGCTTGAGGCAGAATGCCCTGGCATAGTCTCATGCTCTGATCTTTTGGTATACTTGTCAAGGGATGCATTTGTTGTATCAGGTGTCCCTTACTACGACGTGCCTGGTGGACGTCGTGATGGAATGGAATCCCTTGAAGCTAATGTTATTGGAAACCTCCCACTTCCTGATAATACAGTGGACAAGATGATTGACCTGTTTAAAAAGAAAGGCCTGACTGAAGAGGATTTGGTTGTCCTAATTGGTGCCCACTCCATTGGAGTAGCCCACTGTTTCAGCTTCCGTTACAGAGTGGATAATCCAGTGAAGGCTACTATGGTAGATCCAAGACTCGCGGGAGTTATGAAATTCACATGTACCACCCCAATGAGTACTCTGGCTTTTGATACCACCACACAGTACAAGATGGACTCCGTTTATTACAAACAGCTGTCGGGGAAGAGAGCATTGCTTGAATCTGATGCACTTTTGAATGAAGATCCCAGAACAAAGGACTTCATCCAGAAGTTTGGTGACGATGAAAACGGATGGTTCATTAAGTTTGGTAAGGCCATGAATAAGTTGACTTCAATACAAGTGCTCACGGGAGACCAGGGGCAGATCAGGAAACAATGCCGGTTTGTCAACTGAAAACTAGATATAAGTCTCTAACATGCAACAAAATCGAATTGGTTCTTCACTTCATTTTCCCCCCTTAGAAGCTCATAGGACTAATTTAACAAACATATGTAGATGGTGCATGACAGCTGTAGGTTACTCATCTGCAGCAAATTAAACACCATGTACAAAGCTATTTTTTGACTCAAATGAAATCACAATTTTTTGAACTTCTCCAT</gDNA_template>
            <first_frame> L  N  S  L  T  R  S  R  L  S  L  R  Q  N  A  L  A  *  S  H  A  L  I  F  W  Y  T  C  Q  G  M  H  L  L  Y  Q  V  S  L  T  T  T  C  L  V  D  V  V  M  E  W  N  P  L  K  L  M  L  L  E  T  S  H  F  L  I  I  Q  W  T  R  *  L  T  C  L  K  R  K  A  *  L  K  R  I  W  L  S  *  L  V  P  T  P  L  E  *  P  T  V  S  A  S  V  T  E  W  I  I  Q  *  R  L  L  W  *  I  Q  D  S  R  E  L  *  N  S  H  V  P  P  Q  *  V  L  W  L  L  I  P  P  H  S  T  R  W  T  P  F  I  T  N  S  C  R  G  R  E  H  C  L  N  L  M  H  F  *  M  K  I  P  E  Q  R  T  S  S  R  S  L  V  T  M  K  T  D  G  S  L  S  L  V  R  P  *  I  S  *  L  Q  Y  K  C  S  R  E  T  R  G  R  S  G  N  N  A  G  L  S  T  E  N  *  I  *  V  S  N  M  Q  Q  N  R  I  G  S  S  L  H  F  P  P  L  E  A  H  R  T  N  L  T  N  I  C  R  W  C  M  T  A  V  G  Y  S  S  A  A  N  *  T  P  C  T  K  L  F  F  D  S  N  E  I  T  I  F  *  T  S  P  </first_frame>
            <second_frame>  *  T  H  *  R  D  Q  G  *  A  *  G  R  M  P  W  H  S  L  M  L  *  S  F  G  I  L  V  K  G  C  I  C  C  I  R  C  P  L  L  R  R  A  W  W  T  S  *  W  N  G  I  P  *  S  *  C  Y  W  K  P  P  T  S  *  *  Y  S  G  Q  D  D  *  P  V  *  K  E  R  P  D  *  R  G  F  G  C  P  N  W  C  P  L  H  W  S  S  P  L  F  Q  L  P  L  Q  S  G  *  S  S  E  G  Y  Y  G  R  S  K  T  R  G  S  Y  E  I  H  M  Y  H  P  N  E  Y  S  G  F  *  Y  H  H  T  V  Q  D  G  L  R  L  L  Q  T  A  V  G  E  E  S  I  A  *  I  *  C  T  F  E  *  R  S  Q  N  K  G  L  H  P  E  V  W  *  R  *  K  R  M  V  H  *  V  W  *  G  H  E  *  V  D  F  N  T  S  A  H  G  R  P  G  A  D  Q  E  T  M  P  V  C  Q  L  K  T  R  Y  K  S  L  T  C  N  K  I  E  L  V  L  H  F  I  F  P  P  *  K  L  I  G  L  I  *  Q  T  Y  V  D  G  A  *  Q  L  *  V  T  H  L  Q  Q  I  K  H  H  V  Q  S  Y  F  L  T  Q  M  K  S  Q  F  F  E  L  L  H </second_frame>
            <third_frame>   E  L  I  D  E  I  K  A  E  L  E  A  E  C  P  G  I  V  S  C  S  D  L  L  V  Y  L  S  R  D  A  F  V  V  S  G  V  P  Y  Y  D  V  P  G  G  R  R  D  G  M  E  S  L  E  A  N  V  I  G  N  L  P  L  P  D  N  T  V  D  K  M  I  D  L  F  K  K  K  G  L  T  E  E  D  L  V  V  L  I  G  A  H  S  I  G  V  A  H  C  F  S  F  R  Y  R  V  D  N  P  V  K  A  T  M  V  D  P  R  L  A  G  V  M  K  F  T  C  T  T  P  M  S  T  L  A  F  D  T  T  T  Q  Y  K  M  D  S  V  Y  Y  K  Q  L  S  G  K  R  A  L  L  E  S  D  A  L  L  N  E  D  P  R  T  K  D  F  I  Q  K  F  G  D  D  E  N  G  W  F  I  K  F  G  K  A  M  N  K  L  T  S  I  Q  V  L  T  G  D  Q  G  Q  I  R  K  Q  C  R  F  V  N  *  K  L  D  I  S  L  *  H  A  T  K  S  N  W  F  F  T  S  F  S  P  L  R  S  S  *  D  *  F  N  K  H  M  *  M  V  H  D  S  C  R  L  L  I  C  S  K  L  N  T  M  Y  K  A  I  F  *  L  K  *  N  H  N  F  L  N  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91663" stop="91010"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELIDEIKAELEAECPGIVSCSDLLVYLSRDAFVVSGVPYYDVPGGRRDGMESLEANVIGNLPLPDNTVDKMIDLFKKKGLTEEDLVVLIGAHSIGVAHCFSFRYRVDNPVKATMVDPRLAGVMKFTCTTPMSTLAFDTTTQYKMDSVYYKQLSGKRALLESDALLNEDPRTKDFIQKFGDDENGWFIKFGKAMNKLTSIQVLTGDQGQIRKQCRFVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="92604" PGL_stop="91697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92604" e_stop="91884"/>
            <exon e_start="91756" e_stop="91697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.992"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="92604" e_stop="91884" e_length="721"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="91883" i_stop="91757" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="91756" e_stop="91697" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92604" stop="92186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92598" stop="92186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92593" stop="91884"/>
              <exon start="91756" stop="91697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92586" stop="92179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92585" stop="92179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92578" stop="92087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92568" stop="92282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92291" stop="91884"/>
              <exon start="91756" stop="91736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGATGGTAGGGAAGGCGAGGATTTTCGCTGGTCTTTTTCTTATTTGCATTGTCCTCCCTTCGCTGGCCTCAGCGTTTGTAGATCATCTACCTGAAGTTGGCCAAGTAAACGATAACAATGATGTACCGATCCATGTTAGTACTGTTGCTCACTTCAGCGAAAAGCAAGTTAAGGAGGCAATGATAAGAAGGGCAAAGGCAGTGCATGATCTGTGGGCAAATTTTGGTAATAATGATAAGGATGATGTAGCTAAAGAAGATGCTGCACCTGTAACTCCAACGCCTGTTGATTCAACACCTACAACTACACCTGTTGATCCAACTCCAACGCCTGTTGATCCAACACCTAATCCTGGGCCTGTTAACCCTGTTCCAGCTGATCCAACACCTAATCCTGTGCCTGCTAACAATGTACCTGCAGGATATCCAGGAGCAACTCAAGGGCCGCCTGTGGCGATGGGATATGGGGGTGCACCTATAACACAAAATCCATCAGACCAACAAACTGTGCCTGAACAGGCAGGTGCTGCTCAGAACCATCCAACACCGGAAGAAATTAAAGAGCAGCGCAAACATGCTGGATTACAAGTGGGATTTTACGATAGCACTTGCCCGAATGCTGAGAAGATCATTAAGGATGGAATGAACAGAGCTTTTGGGAATGATTCCAGCATGGCTGCTCCAATTGGGCGTCTTCTGTTCCATGATTGCTTTGTCAAT : GGATGTGATGCGTCTATACTCTTAGACAAGACACCAAGTGGTGCAAGGGTAGAAAAACTC</gDNA_template>
            <first_frame> K  D  G  R  E  G  E  D  F  R  W  S  F  S  Y  L  H  C  P  P  F  A  G  L  S  V  C  R  S  S  T  *  S  W  P  S  K  R  *  Q  *  C  T  D  P  C  *  Y  C  C  S  L  Q  R  K  A  S  *  G  G  N  D  K  K  G  K  G  S  A  *  S  V  G  K  F  W  *  *  *  *  G  *  C  S  *  R  R  C  C  T  C  N  S  N  A  C  *  F  N  T  Y  N  Y  T  C  *  S  N  S  N  A  C  *  S  N  T  *  S  W  A  C  *  P  C  S  S  *  S  N  T  *  S  C  A  C  *  Q  C  T  C  R  I  S  R  S  N  S  R  A  A  C  G  D  G  I  W  G  C  T  Y  N  T  K  S  I  R  P  T  N  C  A  *  T  G  R  C  C  S  E  P  S  N  T  G  R  N  *  R  A  A  Q  T  C  W  I  T  S  G  I  L  R  *  H  L  P  E  C  *  E  D  H  *  G  W  N  E  Q  S  F  W  E  *  F  Q  H  G  C  S  N  W  A  S  S  V  P  *  L  L  C  Q   : W  M  *  C  V  Y  T  L  R  Q  D  T  K  W  C  K  G  R  K  T  </first_frame>
            <second_frame>  K  M  V  G  K  A  R  I  F  A  G  L  F  L  I  C  I  V  L  P  S  L  A  S  A  F  V  D  H  L  P  E  V  G  Q  V  N  D  N  N  D  V  P  I  H  V  S  T  V  A  H  F  S  E  K  Q  V  K  E  A  M  I  R  R  A  K  A  V  H  D  L  W  A  N  F  G  N  N  D  K  D  D  V  A  K  E  D  A  A  P  V  T  P  T  P  V  D  S  T  P  T  T  T  P  V  D  P  T  P  T  P  V  D  P  T  P  N  P  G  P  V  N  P  V  P  A  D  P  T  P  N  P  V  P  A  N  N  V  P  A  G  Y  P  G  A  T  Q  G  P  P  V  A  M  G  Y  G  G  A  P  I  T  Q  N  P  S  D  Q  Q  T  V  P  E  Q  A  G  A  A  Q  N  H  P  T  P  E  E  I  K  E  Q  R  K  H  A  G  L  Q  V  G  F  Y  D  S  T  C  P  N  A  E  K  I  I  K  D  G  M  N  R  A  F  G  N  D  S  S  M  A  A  P  I  G  R  L  L  F  H  D  C  F  V  N  :  G  C  D  A  S  I  L  L  D  K  T  P  S  G  A  R  V  E  K  L </second_frame>
            <third_frame>   R  W  *  G  R  R  G  F  S  L  V  F  F  L  F  A  L  S  S  L  R  W  P  Q  R  L  *  I  I  Y  L  K  L  A  K  *  T  I  T  M  M  Y  R  S  M  L  V  L  L  L  T  S  A  K  S  K  L  R  R  Q  *  *  E  G  Q  R  Q  C  M  I  C  G  Q  I  L  V  I  M  I  R  M  M  *  L  K  K  M  L  H  L  *  L  Q  R  L  L  I  Q  H  L  Q  L  H  L  L  I  Q  L  Q  R  L  L  I  Q  H  L  I  L  G  L  L  T  L  F  Q  L  I  Q  H  L  I  L  C  L  L  T  M  Y  L  Q  D  I  Q  E  Q  L  K  G  R  L  W  R  W  D  M  G  V  H  L  *  H  K  I  H  Q  T  N  K  L  C  L  N  R  Q  V  L  L  R  T  I  Q  H  R  K  K  L  K  S  S  A  N  M  L  D  Y  K  W  D  F  T  I  A  L  A  R  M  L  R  R  S  L  R  M  E  *  T  E  L  L  G  M  I  P  A  W  L  L  Q  L  G  V  F  C  S  M  I  A  L  S  M :   D  V  M  R  L  Y  S  *  T  R  H  Q  V  V  Q  G  *  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92603" stop="91884"/>
                    <exon start="91756" stop="91697"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVGKARIFAGLFLICIVLPSLASAFVDHLPEVGQVNDNNDVPIHVSTVAHFSEKQVKEAMIRRAKAVHDLWANFGNNDKDDVAKEDAAPVTPTPVDSTPTTTPVDPTPTPVDPTPNPGPVNPVPADPTPNPVPANNVPAGYPGATQGPPVAMGYGGAPITQNPSDQQTVPEQAGAAQNHPTPEEIKEQRKHAGLQVGFYDSTCPNAEKIIKDGMNRAFGNDSSMAAPIGRLLFHDCFVNGCDASILLDKTPSGARVEKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="95374" PGL_stop="104993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95374" e_stop="95626"/>
            <exon e_start="96131" e_stop="96271"/>
            <exon e_start="96645" e_stop="96707"/>
            <exon e_start="96810" e_stop="96986"/>
            <exon e_start="97055" e_stop="97158"/>
            <exon e_start="101705" e_stop="101812"/>
            <exon e_start="102150" e_stop="102246"/>
            <exon e_start="102343" e_stop="102440"/>
            <exon e_start="102576" e_stop="102717"/>
            <exon e_start="102822" e_stop="102944"/>
            <exon e_start="104658" e_stop="104993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.381" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.468" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95374" e_stop="95626" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95627" i_stop="96130" i_length="504"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96131" e_stop="96271" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.992">
            <gDNA_intron_boundary i_start="96272" i_stop="96644" i_length="373"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96645" e_stop="96707" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.905" acc_prob="0.997">
            <gDNA_intron_boundary i_start="96708" i_stop="96809" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96810" e_stop="96986" e_length="177"/>
          </exon>
          <intron i_serial="4" don_prob="0.381" acc_prob="0.972">
            <gDNA_intron_boundary i_start="96987" i_stop="97054" i_length="68"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97055" e_stop="97158" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101705" e_stop="101812" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.935">
            <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102150" e_stop="102246" e_length="97"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="102343" e_stop="102440" e_length="98"/>
          </exon>
          <intron i_serial="8" don_prob="0.468" acc_prob="0.924">
            <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="102576" e_stop="102717" e_length="142"/>
          </exon>
          <intron i_serial="9" don_prob="0.954" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102718" i_stop="102821" i_length="104"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="102822" e_stop="102944" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="102945" i_stop="104657" i_length="1713"/>
          </intron>
          <exon e_serial="11" e_score="0.997">
            <gDNA_exon_boundary e_start="104658" e_stop="104993" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95374" stop="95626"/>
              <exon start="96131" stop="96271"/>
              <exon start="96645" stop="96707"/>
              <exon start="96810" stop="96986"/>
              <exon start="97055" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95375" stop="95626"/>
              <exon start="96131" stop="96271"/>
              <exon start="96645" stop="96707"/>
              <exon start="96810" stop="96986"/>
              <exon start="97055" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95401" stop="95626"/>
              <exon start="96131" stop="96271"/>
              <exon start="96645" stop="96707"/>
              <exon start="96810" stop="96875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95418" stop="95626"/>
              <exon start="96131" stop="96271"/>
              <exon start="96645" stop="96707"/>
              <exon start="96810" stop="96894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95428" stop="95626"/>
              <exon start="96131" stop="96271"/>
              <exon start="96645" stop="96707"/>
              <exon start="96810" stop="96986"/>
              <exon start="97055" stop="97067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95597" stop="95626"/>
              <exon start="96131" stop="96271"/>
              <exon start="96645" stop="96707"/>
              <exon start="96810" stop="96986"/>
              <exon start="97055" stop="97119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96867" stop="96986"/>
              <exon start="97055" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96971" stop="96986"/>
              <exon start="97055" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102717"/>
              <exon start="102822" stop="102863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97061" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102717"/>
              <exon start="102822" stop="102936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97061" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102717"/>
              <exon start="102822" stop="102861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97110" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102717"/>
              <exon start="102822" stop="102944"/>
              <exon start="104658" stop="104858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97110" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102717"/>
              <exon start="102822" stop="102944"/>
              <exon start="104658" stop="104744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97110" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97110" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97112" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102717"/>
              <exon start="102822" stop="102862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97117" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102218" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102717"/>
              <exon start="102822" stop="102944"/>
              <exon start="104658" stop="104993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712160" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGATTCACTGCGGAGCTTATATTTGATCGTTTTTACTCTACCACCAGTAGATCTACACCGGAAAGCTTCTCTCCGACAGCTTTTCCGATCTGCTATATTGATCGGAATCCGTACTACTTCACATGGCAGGGGCGGCGTCCGCGCTGTTCCTCCTTGACATCAAAGGCCGGGTCCTCGTCTGGCGTGATTACCGTGGAGACGTCACTTCAGTTCAAGCGGAACGATTCTTCACCAAGCTCATTGAAAAAGAG : GGCGATCCTCTGGATCCTGTAGCATATGATAATGGCGTGACCTATATGTTTATACAGCATAACAATGTGTATCTCATGACTGCATCAAGGCAGAACTGTAATGCAGCTAGTCTCCTTCTGTTTCTACACCGTGTCGTAGAT : GTATTCAAGCATTATTTTGAAGAGCTAGAAGAAGAATCCCTTCGCGATAATTTTGTTGTGGTG : TATGAGCTACTTGATGAAATGATGGACTTTGGTTATCCTCAATATACCGAAGCAAAAATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAA : GTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG : TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA : GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG : GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG : TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAG : GAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTACAGCAGAAGAATCAGTTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAAATTCCTTATTTTACTGTTTCTGGTATACAG : GTTCGCTACTTGAAGATTATTGAGAAAAGTGGCTATCAGGCTCTTCCATGGGTGAGATATATTACTATGGCTGGTGAATACGAGTTAAGACTAGTATAAGGTCAAAGCACAGATGATGTTTCTAGCCAATTGAGTTTGTAGAAGGCCTCAGTTAACTCCCAAGTTCTAGAATTTTGAGCTGCTTGGCAAAAGGCAACTGCTCGTTCAAACCGGATGTTAAACAATATTTTCCAGGGACCGTTTTGTTGTTTGTAATCGACTCTTATATGTAATAGTGTTCATTTTCTTGTATCATAAACTTATGACGGTAAGTTTCATATCCAATATTTCTTCAAG</gDNA_template>
            <first_frame> E  D  S  L  R  S  L  Y  L  I  V  F  T  L  P  P  V  D  L  H  R  K  A  S  L  R  Q  L  F  R  S  A  I  L  I  G  I  R  T  T  S  H  G  R  G  G  V  R  A  V  P  P  *  H  Q  R  P  G  P  R  L  A  *  L  P  W  R  R  H  F  S  S  S  G  T  I  L  H  Q  A  H  *  K  R   : G  R  S  S  G  S  C  S  I  *  *  W  R  D  L  Y  V  Y  T  A  *  Q  C  V  S  H  D  C  I  K  A  E  L  *  C  S  *  S  P  S  V  S  T  P  C  R  R   : C  I  Q  A  L  F  *  R  A  R  R  R  I  P  S  R  *  F  C  C  G   : V  *  A  T  *  *  N  D  G  L  W  L  S  S  I  Y  R  S  K  N  S  *  *  V  H  K  N  *  C  I  *  D  G  G  Y  T  K  A  S  N  G  S  Y  K  C  C  V  L  A  *  *  R  D  K  L  Q  E  E  *   : S  V  F  G  C  C  G  E  C  *  Y  T  C  K  Q  Q  W  A  N  S  E  I  R  C  C  W  C  T  E  D  E  G  I  L  E  :  W  H  A  *  V  *  A  W  S  *  *  *  N  V  A  G  S  T  R  A  N  Y  Q  G  E  G  H  *  S  *  *  Y  Q  V  S  S  :  V  C  S  L  G  P  I  *  K  *  S  H  Y  I  I  Y  T  A  R  W  S  L  *  S  Y  D  L  Q  T  W  Y  S   : G  K  A  S  H  M  G  G  S  S  S  G  K  A  F  *  E  P  Y  G  N  C  G  *  S  T  E  P  V  Q  G  T  K  :  Y  C  N  *  C  *  N  *  V  T  C  G  N  G  C  Y  K  S  K  C  P  N  I  N  G  I  I  Y  L  C  T  *  K  R  C  T  D  L  E  N  K  I  F  P  R  W  *   : G  I  Y  V  E  S  G  V  Y  S  S  Q  Y  Y  S  R  R  I  S  S  *  E  K  S  S  Y  T  C  E  I  *  N  S  L  F  Y  C  F  W  Y  T   : G  S  L  L  E  D  Y  *  E  K  W  L  S  G  S  S  M  G  E  I  Y  Y  Y  G  W  *  I  R  V  K  T  S  I  R  S  K  H  R  *  C  F  *  P  I  E  F  V  E  G  L  S  *  L  P  S  S  R  I  L  S  C  L  A  K  G  N  C  S  F  K  P  D  V  K  Q  Y  F  P  G  T  V  L  L  F  V  I  D  S  Y  M  *  *  C  S  F  S  C  I  I  N  L  *  R  *  V  S  Y  P  I  F  L  Q  </first_frame>
            <second_frame>  K  I  H  C  G  A  Y  I  *  S  F  L  L  Y  H  Q  *  I  Y  T  G  K  L  L  S  D  S  F  S  D  L  L  Y  *  S  E  S  V  L  L  H  M  A  G  A  A  S  A  L  F  L  L  D  I  K  G  R  V  L  V  W  R  D  Y  R  G  D  V  T  S  V  Q  A  E  R  F  F  T  K  L  I  E  K  E  :  G  D  P  L  D  P  V  A  Y  D  N  G  V  T  Y  M  F  I  Q  H  N  N  V  Y  L  M  T  A  S  R  Q  N  C  N  A  A  S  L  L  L  F  L  H  R  V  V  D  :  V  F  K  H  Y  F  E  E  L  E  E  E  S  L  R  D  N  F  V  V  V  :  Y  E  L  L  D  E  M  M  D  F  G  Y  P  Q  Y  T  E  A  K  I  L  S  E  F  I  K  T  D  A  Y  R  M  E  V  T  Q  R  P  P  M  A  V  T  N  A  V  S  W  R  S  E  G  I  N  Y  K  K  N  E  :  V  F  L  D  V  V  E  S  V  N  I  L  V  N  S  N  G  Q  I  V  R  S  D  V  V  G  A  L  K  M  R  A  Y  L  S :   G  M  P  E  C  K  L  G  L  N  D  R  M  L  L  E  A  Q  G  R  T  T  K  G  K  A  I  D  L  D  D  I  K  F  H  Q :   C  V  R  L  A  R  F  E  N  D  R  T  I  S  F  I  P  P  D  G  A  F  D  L  M  T  Y  R  L  G  T  Q  :  V  K  P  L  I  W  V  E  A  Q  V  E  R  H  S  R  S  R  M  E  I  V  V  K  A  R  S  Q  F  K  E  R  S :   T  A  T  N  V  E  I  E  L  P  V  A  T  D  A  T  N  P  N  V  R  T  S  M  G  S  S  T  Y  A  P  E  K  D  A  L  I  W  K  I  K  S  F  P  G  G  K  :  E  Y  M  L  R  A  E  F  T  L  P  S  I  T  A  E  E  S  V  P  E  R  K  A  P  I  R  V  K  F  E  I  P  Y  F  T  V  S  G  I  Q  :  V  R  Y  L  K  I  I  E  K  S  G  Y  Q  A  L  P  W  V  R  Y  I  T  M  A  G  E  Y  E  L  R  L  V  *  G  Q  S  T  D  D  V  S  S  Q  L  S  L  *  K  A  S  V  N  S  Q  V  L  E  F  *  A  A  W  Q  K  A  T  A  R  S  N  R  M  L  N  N  I  F  Q  G  P  F  C  C  L  *  S  T  L  I  C  N  S  V  H  F  L  V  S  *  T  Y  D  G  K  F  H  I  Q  Y  F  F  K </second_frame>
            <third_frame>   R  F  T  A  E  L  I  F  D  R  F  Y  S  T  T  S  R  S  T  P  E  S  F  S  P  T  A  F  P  I  C  Y  I  D  R  N  P  Y  Y  F  T  W  Q  G  R  R  P  R  C  S  S  L  T  S  K  A  G  S  S  S  G  V  I  T  V  E  T  S  L  Q  F  K  R  N  D  S  S  P  S  S  L  K  K  R :   A  I  L  W  I  L  *  H  M  I  M  A  *  P  I  C  L  Y  S  I  T  M  C  I  S  *  L  H  Q  G  R  T  V  M  Q  L  V  S  F  C  F  Y  T  V  S  *  M :   Y  S  S  I  I  L  K  S  *  K  K  N  P  F  A  I  I  L  L  W  C :   M  S  Y  L  M  K  *  W  T  L  V  I  L  N  I  P  K  Q  K  F  L  V  S  S  *  K  L  M  H  I  G  W  R  L  H  K  G  L  Q  W  Q  L  Q  M  L  C  P  G  V  V  K  G  *  I  T  R  R  M  K :   C  F  W  M  L  W  R  V  L  I  Y  L  *  T  A  M  G  K  *  *  D  Q  M  L  L  V  H  *  R  *  G  H  T  *   : V  A  C  L  S  V  S  L  V  L  M  I  E  C  C  W  K  H  K  G  E  L  P  R  G  R  P  L  I  L  M  I  S  S  F  I   : S  V  F  A  W  P  D  L  K  M  I  A  L  Y  H  L  Y  R  Q  M  E  P  L  I  L  *  P  T  D  L  V  L  R :   *  S  L  S  Y  G  W  K  L  K  W  K  G  I  L  G  A  V  W  K  L  W  L  K  H  G  A  S  S  R  N  E   : V  L  Q  L  M  L  K  L  S  Y  L  W  Q  R  M  L  Q  I  Q  M  S  E  H  Q  W  D  H  L  L  M  H  L  K  K  M  H  *  F  G  K  *  N  L  S  Q  V  V  R :   N  I  C  *  E  R  S  L  L  F  P  V  L  Q  Q  K  N  Q  F  L  R  E  K  L  L  Y  V  *  N  L  K  F  L  I  L  L  F  L  V  Y  R :   F  A  T  *  R  L  L  R  K  V  A  I  R  L  F  H  G  *  D  I  L  L  W  L  V  N  T  S  *  D  *  Y  K  V  K  A  Q  M  M  F  L  A  N  *  V  C  R  R  P  Q  L  T  P  K  F  *  N  F  E  L  L  G  K  R  Q  L  L  V  Q  T  G  C  *  T  I  F  S  R  D  R  F  V  V  C  N  R  L  L  Y  V  I  V  F  I  F  L  Y  H  K  L  M  T  V  S  F  I  S  N  I  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95477" stop="95626"/>
                    <exon start="96131" stop="96271"/>
                    <exon start="96645" stop="96707"/>
                    <exon start="96810" stop="96986"/>
                    <exon start="97055" stop="97158"/>
                    <exon start="101705" stop="101812"/>
                    <exon start="102150" stop="102246"/>
                    <exon start="102343" stop="102440"/>
                    <exon start="102576" stop="102717"/>
                    <exon start="102822" stop="102944"/>
                    <exon start="104658" stop="104756"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1299</number_coding_nucleotides>
                  <number_encoded_amino_acids>433</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SESVLLHMAGAASALFLLDIKGRVLVWRDYRGDVTSVQAERFFTKLIEKEGDPLDPVAYDNGVTYMFIQHNNVYLMTASRQNCNAASLLLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGINYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRAYLSGMPECKLGLNDRMLLEAQGRTTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLGTQVKPLIWVEAQVERHSRSRMEIVVKARSQFKERSTATNVEIELPVATDATNPNVRTSMGSSTYAPEKDALIWKIKSFPGGKEYMLRAEFTLPSITAEESVPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96921" e_stop="96929"/>
            <exon e_start="97099" e_stop="97158"/>
            <exon e_start="101705" e_stop="101812"/>
            <exon e_start="102150" e_stop="102246"/>
            <exon e_start="102343" e_stop="102440"/>
            <exon e_start="102576" e_stop="102717"/>
            <exon e_start="102822" e_stop="102944"/>
            <exon e_start="104658" e_stop="104993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.602" acc_prob="0.942" e_score="0.444"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.468" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.444">
            <gDNA_exon_boundary e_start="96921" e_stop="96929" e_length="9"/>
          </exon>
          <intron i_serial="1" don_prob="0.602" acc_prob="0.942">
            <gDNA_intron_boundary i_start="96930" i_stop="97098" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97099" e_stop="97158" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101705" e_stop="101812" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.935">
            <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102150" e_stop="102246" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102343" e_stop="102440" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.468" acc_prob="0.924">
            <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102576" e_stop="102717" e_length="142"/>
          </exon>
          <intron i_serial="6" don_prob="0.954" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102718" i_stop="102821" i_length="104"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102822" e_stop="102944" e_length="123"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="102945" i_stop="104657" i_length="1713"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="104658" e_stop="104993" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96921" stop="96929"/>
              <exon start="97099" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102717"/>
              <exon start="102822" stop="102848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97110" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102717"/>
              <exon start="102822" stop="102944"/>
              <exon start="104658" stop="104858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97110" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102717"/>
              <exon start="102822" stop="102944"/>
              <exon start="104658" stop="104744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97110" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97110" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97112" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102717"/>
              <exon start="102822" stop="102862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97117" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102218" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102717"/>
              <exon start="102822" stop="102944"/>
              <exon start="104658" stop="104993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712160" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCCAATG : CAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG : TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA : GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG : GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG : TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAG : GAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTACAGCAGAAGAATCAGTTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAAATTCCTTATTTTACTGTTTCTGGTATACAG : GTTCGCTACTTGAAGATTATTGAGAAAAGTGGCTATCAGGCTCTTCCATGGGTGAGATATATTACTATGGCTGGTGAATACGAGTTAAGACTAGTATAAGGTCAAAGCACAGATGATGTTTCTAGCCAATTGAGTTTGTAGAAGGCCTCAGTTAACTCCCAAGTTCTAGAATTTTGAGCTGCTTGGCAAAAGGCAACTGCTCGTTCAAACCGGATGTTAAACAATATTTTCCAGGGACCGTTTTGTTGTTTGTAATCGACTCTTATATGTAATAGTGTTCATTTTCTTGTATCATAAACTTATGACGGTAAGTTTCATATCCAATATTTCTTCAAG</gDNA_template>
            <first_frame> P  P  M  :  Q  W  A  N  S  E  I  R  C  C  W  C  T  E  D  E  G  I  L  E  :  W  H  A  *  V  *  A  W  S  *  *  *  N  V  A  G  S  T  R  A  N  Y  Q  G  E  G  H  *  S  *  *  Y  Q  V  S  S  :  V  C  S  L  G  P  I  *  K  *  S  H  Y  I  I  Y  T  A  R  W  S  L  *  S  Y  D  L  Q  T  W  Y  S   : G  K  A  S  H  M  G  G  S  S  S  G  K  A  F  *  E  P  Y  G  N  C  G  *  S  T  E  P  V  Q  G  T  K  :  Y  C  N  *  C  *  N  *  V  T  C  G  N  G  C  Y  K  S  K  C  P  N  I  N  G  I  I  Y  L  C  T  *  K  R  C  T  D  L  E  N  K  I  F  P  R  W  *   : G  I  Y  V  E  S  G  V  Y  S  S  Q  Y  Y  S  R  R  I  S  S  *  E  K  S  S  Y  T  C  E  I  *  N  S  L  F  Y  C  F  W  Y  T   : G  S  L  L  E  D  Y  *  E  K  W  L  S  G  S  S  M  G  E  I  Y  Y  Y  G  W  *  I  R  V  K  T  S  I  R  S  K  H  R  *  C  F  *  P  I  E  F  V  E  G  L  S  *  L  P  S  S  R  I  L  S  C  L  A  K  G  N  C  S  F  K  P  D  V  K  Q  Y  F  P  G  T  V  L  L  F  V  I  D  S  Y  M  *  *  C  S  F  S  C  I  I  N  L  *  R  *  V  S  Y  P  I  F  L  Q  </first_frame>
            <second_frame>  L  Q  C :   N  G  Q  I  V  R  S  D  V  V  G  A  L  K  M  R  A  Y  L  S :   G  M  P  E  C  K  L  G  L  N  D  R  M  L  L  E  A  Q  G  R  T  T  K  G  K  A  I  D  L  D  D  I  K  F  H  Q :   C  V  R  L  A  R  F  E  N  D  R  T  I  S  F  I  P  P  D  G  A  F  D  L  M  T  Y  R  L  G  T  Q  :  V  K  P  L  I  W  V  E  A  Q  V  E  R  H  S  R  S  R  M  E  I  V  V  K  A  R  S  Q  F  K  E  R  S :   T  A  T  N  V  E  I  E  L  P  V  A  T  D  A  T  N  P  N  V  R  T  S  M  G  S  S  T  Y  A  P  E  K  D  A  L  I  W  K  I  K  S  F  P  G  G  K  :  E  Y  M  L  R  A  E  F  T  L  P  S  I  T  A  E  E  S  V  P  E  R  K  A  P  I  R  V  K  F  E  I  P  Y  F  T  V  S  G  I  Q  :  V  R  Y  L  K  I  I  E  K  S  G  Y  Q  A  L  P  W  V  R  Y  I  T  M  A  G  E  Y  E  L  R  L  V  *  G  Q  S  T  D  D  V  S  S  Q  L  S  L  *  K  A  S  V  N  S  Q  V  L  E  F  *  A  A  W  Q  K  A  T  A  R  S  N  R  M  L  N  N  I  F  Q  G  P  F  C  C  L  *  S  T  L  I  C  N  S  V  H  F  L  V  S  *  T  Y  D  G  K  F  H  I  Q  Y  F  F  K </second_frame>
            <third_frame>   S  N   : A  M  G  K  *  *  D  Q  M  L  L  V  H  *  R  *  G  H  T  *   : V  A  C  L  S  V  S  L  V  L  M  I  E  C  C  W  K  H  K  G  E  L  P  R  G  R  P  L  I  L  M  I  S  S  F  I   : S  V  F  A  W  P  D  L  K  M  I  A  L  Y  H  L  Y  R  Q  M  E  P  L  I  L  *  P  T  D  L  V  L  R :   *  S  L  S  Y  G  W  K  L  K  W  K  G  I  L  G  A  V  W  K  L  W  L  K  H  G  A  S  S  R  N  E   : V  L  Q  L  M  L  K  L  S  Y  L  W  Q  R  M  L  Q  I  Q  M  S  E  H  Q  W  D  H  L  L  M  H  L  K  K  M  H  *  F  G  K  *  N  L  S  Q  V  V  R :   N  I  C  *  E  R  S  L  L  F  P  V  L  Q  Q  K  N  Q  F  L  R  E  K  L  L  Y  V  *  N  L  K  F  L  I  L  L  F  L  V  Y  R :   F  A  T  *  R  L  L  R  K  V  A  I  R  L  F  H  G  *  D  I  L  L  W  L  V  N  T  S  *  D  *  Y  K  V  K  A  Q  M  M  F  L  A  N  *  V  C  R  R  P  Q  L  T  P  K  F  *  N  F  E  L  L  G  K  R  Q  L  L  V  Q  T  G  C  *  T  I  F  S  R  D  R  F  V  V  C  N  R  L  L  Y  V  I  V  F  I  F  L  Y  H  K  L  M  T  V  S  F  I  S  N  I  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96922" stop="96929"/>
                    <exon start="97099" stop="97158"/>
                    <exon start="101705" stop="101812"/>
                    <exon start="102150" stop="102246"/>
                    <exon start="102343" stop="102440"/>
                    <exon start="102576" stop="102717"/>
                    <exon start="102822" stop="102944"/>
                    <exon start="104658" stop="104756"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQCNGQIVRSDVVGALKMRAYLSGMPECKLGLNDRMLLEAQGRTTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLGTQVKPLIWVEAQVERHSRSRMEIVVKARSQFKERSTATNVEIELPVATDATNPNVRTSMGSSTYAPEKDALIWKIKSFPGGKEYMLRAEFTLPSITAEESVPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="101691" e_stop="101812"/>
            <exon e_start="102150" e_stop="102246"/>
            <exon e_start="102343" e_stop="102440"/>
            <exon e_start="102576" e_stop="102717"/>
            <exon e_start="102822" e_stop="102944"/>
            <exon e_start="104658" e_stop="104993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.935" e_score="0.959"/>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.468" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="101691" e_stop="101812" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.935">
            <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102150" e_stop="102246" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102343" e_stop="102440" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.468" acc_prob="0.924">
            <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102576" e_stop="102717" e_length="142"/>
          </exon>
          <intron i_serial="4" don_prob="0.954" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102718" i_stop="102821" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102822" e_stop="102944" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="102945" i_stop="104657" i_length="1713"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="104658" e_stop="104993" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101691" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102218" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102717"/>
              <exon start="102822" stop="102944"/>
              <exon start="104658" stop="104993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712160" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA : GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG : GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG : TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAAAAGATGCACTGATTTGGAAAATAAAATCTTTCCCAGGTGGTAAG : GAATATATGTTGAGAGCGGAGTTTACTCTTCCCAGTATTACAGCAGAAGAATCAGTTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAAATTCCTTATTTTACTGTTTCTGGTATACAG : GTTCGCTACTTGAAGATTATTGAGAAAAGTGGCTATCAGGCTCTTCCATGGGTGAGATATATTACTATGGCTGGTGAATACGAGTTAAGACTAGTATAAGGTCAAAGCACAGATGATGTTTCTAGCCAATTGAGTTTGTAGAAGGCCTCAGTTAACTCCCAAGTTCTAGAATTTTGAGCTGCTTGGCAAAAGGCAACTGCTCGTTCAAACCGGATGTTAAACAATATTTTCCAGGGACCGTTTTGTTGTTTGTAATCGACTCTTATATGTAATAGTGTTCATTTTCTTGTATCATAAACTTATGACGGTAAGTTTCATATCCAATATTTCTTCAAG</gDNA_template>
            <first_frame> F  L  F  C  S  G  M  P  E  C  K  L  G  L  N  D  R  M  L  L  E  A  Q  G  R  T  T  K  G  K  A  I  D  L  D  D  I  K  F  H  Q :   C  V  R  L  A  R  F  E  N  D  R  T  I  S  F  I  P  P  D  G  A  F  D  L  M  T  Y  R  L  G  T  Q  :  V  K  P  L  I  W  V  E  A  Q  V  E  R  H  S  R  S  R  M  E  I  V  V  K  A  R  S  Q  F  K  E  R  S :   T  A  T  N  V  E  I  E  L  P  V  A  T  D  A  T  N  P  N  V  R  T  S  M  G  S  S  T  Y  A  P  E  K  D  A  L  I  W  K  I  K  S  F  P  G  G  K  :  E  Y  M  L  R  A  E  F  T  L  P  S  I  T  A  E  E  S  V  P  E  R  K  A  P  I  R  V  K  F  E  I  P  Y  F  T  V  S  G  I  Q  :  V  R  Y  L  K  I  I  E  K  S  G  Y  Q  A  L  P  W  V  R  Y  I  T  M  A  G  E  Y  E  L  R  L  V  *  G  Q  S  T  D  D  V  S  S  Q  L  S  L  *  K  A  S  V  N  S  Q  V  L  E  F  *  A  A  W  Q  K  A  T  A  R  S  N  R  M  L  N  N  I  F  Q  G  P  F  C  C  L  *  S  T  L  I  C  N  S  V  H  F  L  V  S  *  T  Y  D  G  K  F  H  I  Q  Y  F  F  K </first_frame>
            <second_frame>  F  F  F  A  V  A  C  L  S  V  S  L  V  L  M  I  E  C  C  W  K  H  K  G  E  L  P  R  G  R  P  L  I  L  M  I  S  S  F  I   : S  V  F  A  W  P  D  L  K  M  I  A  L  Y  H  L  Y  R  Q  M  E  P  L  I  L  *  P  T  D  L  V  L  R :   *  S  L  S  Y  G  W  K  L  K  W  K  G  I  L  G  A  V  W  K  L  W  L  K  H  G  A  S  S  R  N  E   : V  L  Q  L  M  L  K  L  S  Y  L  W  Q  R  M  L  Q  I  Q  M  S  E  H  Q  W  D  H  L  L  M  H  L  K  K  M  H  *  F  G  K  *  N  L  S  Q  V  V  R :   N  I  C  *  E  R  S  L  L  F  P  V  L  Q  Q  K  N  Q  F  L  R  E  K  L  L  Y  V  *  N  L  K  F  L  I  L  L  F  L  V  Y  R :   F  A  T  *  R  L  L  R  K  V  A  I  R  L  F  H  G  *  D  I  L  L  W  L  V  N  T  S  *  D  *  Y  K  V  K  A  Q  M  M  F  L  A  N  *  V  C  R  R  P  Q  L  T  P  K  F  *  N  F  E  L  L  G  K  R  Q  L  L  V  Q  T  G  C  *  T  I  F  S  R  D  R  F  V  V  C  N  R  L  L  Y  V  I  V  F  I  F  L  Y  H  K  L  M  T  V  S  F  I  S  N  I  S  S   </second_frame>
            <third_frame>   S  F  L  Q  W  H  A  *  V  *  A  W  S  *  *  *  N  V  A  G  S  T  R  A  N  Y  Q  G  E  G  H  *  S  *  *  Y  Q  V  S  S  :  V  C  S  L  G  P  I  *  K  *  S  H  Y  I  I  Y  T  A  R  W  S  L  *  S  Y  D  L  Q  T  W  Y  S   : G  K  A  S  H  M  G  G  S  S  S  G  K  A  F  *  E  P  Y  G  N  C  G  *  S  T  E  P  V  Q  G  T  K  :  Y  C  N  *  C  *  N  *  V  T  C  G  N  G  C  Y  K  S  K  C  P  N  I  N  G  I  I  Y  L  C  T  *  K  R  C  T  D  L  E  N  K  I  F  P  R  W  *   : G  I  Y  V  E  S  G  V  Y  S  S  Q  Y  Y  S  R  R  I  S  S  *  E  K  S  S  Y  T  C  E  I  *  N  S  L  F  Y  C  F  W  Y  T   : G  S  L  L  E  D  Y  *  E  K  W  L  S  G  S  S  M  G  E  I  Y  Y  Y  G  W  *  I  R  V  K  T  S  I  R  S  K  H  R  *  C  F  *  P  I  E  F  V  E  G  L  S  *  L  P  S  S  R  I  L  S  C  L  A  K  G  N  C  S  F  K  P  D  V  K  Q  Y  F  P  G  T  V  L  L  F  V  I  D  S  Y  M  *  *  C  S  F  S  C  I  I  N  L  *  R  *  V  S  Y  P  I  F  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101691" stop="101812"/>
                    <exon start="102150" stop="102246"/>
                    <exon start="102343" stop="102440"/>
                    <exon start="102576" stop="102717"/>
                    <exon start="102822" stop="102944"/>
                    <exon start="104658" stop="104756"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLFCSGMPECKLGLNDRMLLEAQGRTTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLGTQVKPLIWVEAQVERHSRSRMEIVVKARSQFKERSTATNVEIELPVATDATNPNVRTSMGSSTYAPEKDALIWKIKSFPGGKEYMLRAEFTLPSITAEESVPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="107676" PGL_stop="116297"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107676" e_stop="107714"/>
            <exon e_start="109722" e_stop="109763"/>
            <exon e_start="115633" e_stop="116297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.667" e_score="0.795"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.524"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.795">
            <gDNA_exon_boundary e_start="107676" e_stop="107714" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.667">
            <gDNA_intron_boundary i_start="107715" i_stop="109721" i_length="2007"/>
          </intron>
          <exon e_serial="2" e_score="0.524">
            <gDNA_exon_boundary e_start="109722" e_stop="109763" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109764" i_stop="115632" i_length="5869"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="115633" e_stop="116297" e_length="665"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107676" stop="107714"/>
              <exon start="109722" stop="109763"/>
              <exon start="115633" stop="116297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361117" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATATATATATATATATATATATATATTAAATTATGTA : TATAAAAATATTTTGAACAAGTAGGGGTAGATAGGGGAAAAA : TAAACTTAGGCCAAAGTCATATGCGGCCACTCAAAGTTGTCCCGATTATTCATTTAGACACCTCAACTAGACGTACTACCTATCGAACACTTCAACCATTCTGAATTTGAACCATTTGAACATTTTTTCGAGAATAAACAAAAAATAGAGAATGTGTGAAATACACTCGCGCTGACATGTCAATTTGACCAATCAAATAATGACATGTGTTATTTTTTAATCCAAAAAATTATTTAAACATTATATTATAAAGTAAAAAAAATAAAAATTATTTTAAAGTAAAAAAAAAAAGAAAAAAAAAAGAGAAAAACCTAAACACCCACTTCCCTGCCTTCAACTGGAACAAAACATACATTTCCTCTAACTCCATTAATGGCGACCCCCCCCCCCCCTTCCCTGTACAGTTATCTTTAACTCAACAAATTTTTTTTTCATCAGCTTTTTTATTAATTATAATTTTTTACTTCATCTCGTTTTTTAGGTAGAGAAAGATGGGGAAAAGAATCTCTTCGAAAAATTTATAAATGAAACAAAAATGCTAAGAATTTTGAAACCATTAGAATGGTGGGGGAAGAAGATAACCATTGATACTAAGAATTTTGAAATCATTAGAATGATGGGGGAAGAAGATAACCACTGGTGTATGGGTATGGGGGTTGGGGTGG</gDNA_template>
            <first_frame> I  Y  I  Y  I  Y  I  Y  I  L  N  Y  V  :  Y  K  N  I  L  N  K  *  G  *  I  G  E  K  :  *  T  *  A  K  V  I  C  G  H  S  K  L  S  R  L  F  I  *  T  P  Q  L  D  V  L  P  I  E  H  F  N  H  S  E  F  E  P  F  E  H  F  F  E  N  K  Q  K  I  E  N  V  *  N  T  L  A  L  T  C  Q  F  D  Q  S  N  N  D  M  C  Y  F  L  I  Q  K  I  I  *  T  L  Y  Y  K  V  K  K  I  K  I  I  L  K  *  K  K  K  E  K  K  K  R  K  T  *  T  P  T  S  L  P  S  T  G  T  K  H  T  F  P  L  T  P  L  M  A  T  P  P  P  P  S  L  Y  S  Y  L  *  L  N  K  F  F  F  H  Q  L  F  Y  *  L  *  F  F  T  S  S  R  F  L  G  R  E  R  W  G  K  E  S  L  R  K  I  Y  K  *  N  K  N  A  K  N  F  E  T  I  R  M  V  G  E  E  D  N  H  *  Y  *  E  F  *  N  H  *  N  D  G  G  R  R  *  P  L  V  Y  G  Y  G  G  W  G   </first_frame>
            <second_frame>  Y  I  Y  I  Y  I  Y  I  Y  *  I  M  Y :   I  K  I  F  *  T  S  R  G  R  *  G  K  N :   K  L  R  P  K  S  Y  A  A  T  Q  S  C  P  D  Y  S  F  R  H  L  N  *  T  Y  Y  L  S  N  T  S  T  I  L  N  L  N  H  L  N  I  F  S  R  I  N  K  K  *  R  M  C  E  I  H  S  R  *  H  V  N  L  T  N  Q  I  M  T  C  V  I  F  *  S  K  K  L  F  K  H  Y  I  I  K  *  K  K  *  K  L  F  *  S  K  K  K  K  K  K  K  R  E  K  P  K  H  P  L  P  C  L  Q  L  E  Q  N  I  H  F  L  *  L  H  *  W  R  P  P  P  P  L  P  C  T  V  I  F  N  S  T  N  F  F  F  I  S  F  F  I  N  Y  N  F  L  L  H  L  V  F  *  V  E  K  D  G  E  K  N  L  F  E  K  F  I  N  E  T  K  M  L  R  I  L  K  P  L  E  W  W  G  K  K  I  T  I  D  T  K  N  F  E  I  I  R  M  M  G  E  E  D  N  H  W  C  M  G  M  G  V  G  V  </second_frame>
            <third_frame>   I  Y  I  Y  I  Y  I  Y  I  K  L  C   : I  *  K  Y  F  E  Q  V  G  V  D  R  G  K   : I  N  L  G  Q  S  H  M  R  P  L  K  V  V  P  I  I  H  L  D  T  S  T  R  R  T  T  Y  R  T  L  Q  P  F  *  I  *  T  I  *  T  F  F  R  E  *  T  K  N  R  E  C  V  K  Y  T  R  A  D  M  S  I  *  P  I  K  *  *  H  V  L  F  F  N  P  K  N  Y  L  N  I  I  L  *  S  K  K  N  K  N  Y  F  K  V  K  K  K  R  K  K  K  E  K  N  L  N  T  H  F  P  A  F  N  W  N  K  T  Y  I  S  S  N  S  I  N  G  D  P  P  P  P  F  P  V  Q  L  S  L  T  Q  Q  I  F  F  S  S  A  F  L  L  I  I  I  F  Y  F  I  S  F  F  R  *  R  K  M  G  K  R  I  S  S  K  N  L  *  M  K  Q  K  C  *  E  F  *  N  H  *  N  G  G  G  R  R  *  P  L  I  L  R  I  L  K  S  L  E  *  W  G  K  K  I  T  T  G  V  W  V  W  G  L  G  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115884" stop="116117"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKKNKNYFKVKKKRKKKEKNLNTHFPAFNWNKTYISSNSINGDPPPPFPVQLSLTQQIFFSSAFLLIIIFYFISFFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="116298" PGL_stop="115627"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116298" e_stop="115627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="116298" e_stop="115627" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116298" stop="115627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACCCCAACCCCCATACCCATACACCAGTGGTTATCTTCTTCCCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAATGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAATTATAATTAATAAAAAAGCTGATGAAAAAAAAATTTGTTGAGTTAAAGATAACTGTACAGGGAAGGGGGGGGGGGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAGGTTTTTCTCTTTTTTTTTTCTTTTTTTTTTTACTTTAAAATAATTTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCGATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAACTTTGAGTGGCCGCATATGACTTTGGCCTAAGTTTAAAGTTG</gDNA_template>
            <first_frame> P  T  P  T  P  I  P  I  H  Q  W  L  S  S  S  P  I  I  L  M  I  S  K  F  L  V  S  M  V  I  F  F  P  H  H  S  N  G  F  K  I  L  S  I  F  V  S  F  I  N  F  S  K  R  F  F  S  P  S  F  S  T  *  K  T  R  *  S  K  K  L  *  L  I  K  K  L  M  K  K  K  F  V  E  L  K  I  T  V  Q  G  R  G  G  G  G  R  H  *  W  S  *  R  K  C  M  F  C  S  S  *  R  Q  G  S  G  C  L  G  F  S  L  F  F  F  F  F  F  L  L  *  N  N  F  Y  F  F  Y  F  I  I  *  C  L  N  N  F  L  D  *  K  I  T  H  V  I  I  *  L  V  K  L  T  C  Q  R  E  C  I  S  H  I  L  Y  F  L  F  I  L  E  K  M  F  K  W  F  K  F  R  M  V  E  V  F  D  R  *  Y  V  *  L  R  C  L  N  E  *  S  G  Q  L  *  V  A  A  Y  D  F  G  L  S  L  K  L </first_frame>
            <second_frame>  P  P  Q  P  P  Y  P  Y  T  S  G  Y  L  L  P  P  S  F  *  *  F  Q  N  S  *  Y  Q  W  L  S  S  S  P  T  I  L  M  V  S  K  F  L  A  F  L  F  H  L  *  I  F  R  R  D  S  F  P  H  L  S  L  P  K  K  R  D  E  V  K  N  Y  N  *  *  K  S  *  *  K  K  N  L  L  S  *  R  *  L  Y  R  E  G  G  G  G  V  A  I  N  G  V  R  G  N  V  C  F  V  P  V  E  G  R  E  V  G  V  *  V  F  L  F  F  F  S  F  F  F  Y  F  K  I  I  F  I  F  F  T  L  *  Y  N  V  *  I  I  F  W  I  K  K  *  H  M  S  L  F  D  W  S  N  *  H  V  S  A  S  V  F  H  T  F  S  I  F  C  L  F  S  K  K  C  S  N  G  S  N  S  E  W  L  K  C  S  I  G  S  T  S  S  *  G  V  *  M  N  N  R  D  N  F  E  W  P  H  M  T  L  A  *  V  *  S   </second_frame>
            <third_frame>   H  P  N  P  H  T  H  T  P  V  V  I  F  F  P  H  H  S  N  D  F  K  I  L  S  I  N  G  Y  L  L  P  P  P  F  *  W  F  Q  N  S  *  H  F  C  F  I  Y  K  F  F  E  E  I  L  F  P  I  F  L  Y  L  K  N  E  M  K  *  K  I  I  I  N  K  K  A  D  E  K  K  I  C  *  V  K  D  N  C  T  G  K  G  G  G  G  S  P  L  M  E  L  E  E  M  Y  V  L  F  Q  L  K  A  G  K  W  V  F  R  F  F  S  F  F  F  L  F  F  F  T  L  K  *  F  L  F  F  L  L  Y  N  I  M  F  K  *  F  F  G  L  K  N  N  T  C  H  Y  L  I  G  Q  I  D  M  S  A  R  V  Y  F  T  H  S  L  F  F  V  Y  S  R  K  N  V  Q  M  V  Q  I  Q  N  G  *  S  V  R  *  V  V  R  L  V  E  V  S  K  *  I  I  G  T  T  L  S  G  R  I  *  L  W  P  K  F  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0190L02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="127739" PGL_stop="132151"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127797" e_stop="130053"/>
            <exon e_start="131124" e_stop="131438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.917" e_score="0.934"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="127797" e_stop="130053" e_length="2257"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.917">
            <gDNA_intron_boundary i_start="130054" i_stop="131123" i_length="1070"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="131124" e_stop="131438" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127797" stop="128554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127867" stop="128500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127873" stop="128338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127914" stop="128410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128081" stop="130053"/>
              <exon start="131124" stop="131438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E741112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128481" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128564" stop="129160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128592" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128630" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128731" stop="129196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128739" stop="129037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128771" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128778" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128833" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128855" stop="129239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129010" stop="129577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129536" stop="130053"/>
              <exon start="131124" stop="131224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129749" stop="130053"/>
              <exon start="131124" stop="131336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228193" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTAACAGTGAAAAAAGTTGCAATAATTATCCAAAGGCAAAGGCAGCTGCACAGTAAAACTTGTCAGTCTCTCCTCCAAATCTCCATTGCTCTGGTAATGTTATTGCTGTAGTTGAGATTTTTGTGAATTAGGGTTCATTTTTTCTTTTGAATCATGAGATTTACTTGTAACTCTCCGATTTTGCTGTAGAAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAATGAGATGGTTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGACTGGCTCAGATCTACCCTCCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAACGGAGTTATGCATCGTGATGTCAAATCTTCAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGACTTTGGACTATCCAAGACAAGGCCTCAGCTTTATCAAACCACAGACGTGAAAGGAACTTTCGGCTACATTGACCCTGAATATTTTATAAAGGGACGACTTACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTTGAAGTTCTTTGTGCTAGGTCTGCCATGGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAGAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTTCATTTTATTAGGTGCGTCCGGCTGTTACACATATTGTATATGGTTCTTATTAAGTTGTTCAGACATTTTCTTATTGTAAAGAGGCAAAAAGGAAGTTTGCTGCTTTGACATAGTCATCTAAAACTATATACATTCAACTTTCAGAATGGAACTATAAAAGTTTGTGGAGCAATTCTAAATGTTACTCAACCTGTTCACAAAATGACTATTGTAGAGCAATAATGGTTATAATATATAACCATTATTGAGTAATATTTTTGTAGTAGTATTGCCCAAGTCCATTAGCGGAAAGGTAATTTTCTTTTCGGTTCTCTCTTCCACAATAGCTATCAATCTCTCTGTCTTCTCGCTAAATTTCCTCAGTTGTGGTATAATCAGAGGTTCCTCAAGCCTTCTGTTTTTGTATACATATATTTGTGATTTTCATCTATCATGCTTACTGTTAGGAGTTCATATTGCTTGATGAGAATTTTGTGGCAAAAATTACTGATTTTGGACGATTCAAGAAAGCTTGATCAAACCCATGTTACCACAATAGAAAAGGGAACTTTTGGTTATCTTGACCCTGAATATTATCAAACTAGTCTGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTAGAAGTTCTTTGTGCTAGGCCTGCGCTGGATTCACCTCGTTCGAGGGAGATGGTCAGCTTAGTTAAATGGGCAAAGGAGTGTCAGACGAACGGACAGTCAAAACGAATTATAGATCCCAATCTTGTTGGCAAAATAAGACCAGATTCCCTCGGGAGGTTTGGAGAAACAGCGGTGAAATGCTTAGCTGAAACTGGCGTAGACTGGCCATCAATGGGTGAGGTGCTGCAGAAACTGGACTATGCACTTCATCTCTAAGAGCCTGTCATTCAAGAAAACACTGCCATCCCTATTCGCGAGCAAATCAATGATTTCAGTCATGTTGATGACACTTCCTCTGCTGCTTCGGTCAAAATTGGGCTGATCTCTAGTATGAATG : CGTTCAGATTTTGCTCAAGAAAACAGCCGGGAGAAGTTCAATTAATGGTTGCACTCCATGGGAACCAACTATTCCAAGCCAACAACTTCCATAAATGATGCTTCCAATTTGAGTAATCGCGTTCCTTTTGAAAGTTTTCGAGTTCCTTTTGTAGATTTGCAGGAAGCAACTAATAACTTTGATGACAAGTTTCTGATTGGAGTGGGTATATTTGGTAAGGTTTACAGGGGTGTTTTGCGTGATGGTACAAAGGTGGCCCTGAAAAGACGTAAGCCTGAGTCTCCACAAGGTATTGAAGAGTTCCGAACAGAAATT</gDNA_template>
            <first_frame> Y  *  Q  *  K  K  L  Q  *  L  S  K  G  K  G  S  C  T  V  K  L  V  S  L  S  S  K  S  P  L  L  W  *  C  Y  C  C  S  *  D  F  C  E  L  G  F  I  F  S  F  E  S  *  D  L  L  V  T  L  R  F  C  C  R  N  L  R  C  Q  I  L  V  D  L  F  M  Y  *  W  E  A  S  I  P  R  Q  Q  I  P  *  V  M  L  Q  T  L  L  K  V  I  D  F  L  *  K  I  W  R  K  Q  P  T  I  L  M  T  S  F  S  L  E  R  V  H  L  G  R  F  T  R  V  F  C  V  M  E  Q  R  S  P  *  K  G  K  I  V  T  P  G  K  V  L  K  S  S  E  Q  K  L  G  Y  S  H  A  V  A  I  R  I  W  F  H  *  *  D  T  V  M  K  E  M  R  W  F  *  F  M  T  T  W  R  M  G  T  S  R  A  I  *  L  A  Q  I  Y  P  P  *  A  G  S  R  G  W  R  Y  A  *  G  Q  P  E  V  Y  T  T  F  I  L  T  E  L  C  I  V  M  S  N  L  Q  T  Y  C  L  M  R  I  L  C  Q  K  L  L  T  L  D  Y  P  R  Q  G  L  S  F  I  K  P  Q  T  *  K  E  L  S  A  T  L  T  L  N  I  L  *  R  D  D  L  Q  K  N  L  M  F  I  L  S  V  L  F  Y  L  K  F  F  V  L  G  L  P  W  F  N  L  F  Q  G  R  W  L  I  *  L  N  G  Q  W  S  R  I  I  M  D  S  W  N  K  S  *  I  P  I  L  Q  I  K  *  D  Q  S  P  S  G  S  L  E  K  Q  R  *  N  A  *  L  C  L  V  K  I  G  H  Q  W  V  M  C  C  G  N  W  S  M  H  F  V  S  K  S  L  L  F  K  I  F  L  F  F  *  V  L  Y  R  K  V  N  F  E  N  L  N  C  Y  T  C  G  S  F  F  H  F  I  R  C  V  R  L  L  H  I  L  Y  M  V  L  I  K  L  F  R  H  F  L  I  V  K  R  Q  K  G  S  L  L  L  *  H  S  H  L  K  L  Y  T  F  N  F  Q  N  G  T  I  K  V  C  G  A  I  L  N  V  T  Q  P  V  H  K  M  T  I  V  E  Q  *  W  L  *  Y  I  T  I  I  E  *  Y  F  C  S  S  I  A  Q  V  H  *  R  K  G  N  F  L  F  G  S  L  F  H  N  S  Y  Q  S  L  C  L  L  A  K  F  P  Q  L  W  Y  N  Q  R  F  L  K  P  S  V  F  V  Y  I  Y  L  *  F  S  S  I  M  L  T  V  R  S  S  Y  C  L  M  R  I  L  W  Q  K  L  L  I  L  D  D  S  R  K  L  D  Q  T  H  V  T  T  I  E  K  G  T  F  G  Y  L  D  P  E  Y  Y  Q  T  S  L  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  L  E  V  L  C  A  R  P  A  L  D  S  P  R  S  R  E  M  V  S  L  V  K  W  A  K  E  C  Q  T  N  G  Q  S  K  R  I  I  D  P  N  L  V  G  K  I  R  P  D  S  L  G  R  F  G  E  T  A  V  K  C  L  A  E  T  G  V  D  W  P  S  M  G  E  V  L  Q  K  L  D  Y  A  L  H  L  *  E  P  V  I  Q  E  N  T  A  I  P  I  R  E  Q  I  N  D  F  S  H  V  D  D  T  S  S  A  A  S  V  K  I  G  L  I  S  S  M  N   : A  F  R  F  C  S  R  K  Q  P  G  E  V  Q  L  M  V  A  L  H  G  N  Q  L  F  Q  A  N  N  F  H  K  *  C  F  Q  F  E  *  S  R  S  F  *  K  F  S  S  S  F  C  R  F  A  G  S  N  *  *  L  *  *  Q  V  S  D  W  S  G  Y  I  W  *  G  L  Q  G  C  F  A  *  W  Y  K  G  G  P  E  K  T  *  A  *  V  S  T  R  Y  *  R  V  P  N  R  N  </first_frame>
            <second_frame>  I  N  S  E  K  S  C  N  N  Y  P  K  A  K  A  A  A  Q  *  N  L  S  V  S  P  P  N  L  H  C  S  G  N  V  I  A  V  V  E  I  F  V  N  *  G  S  F  F  L  L  N  H  E  I  Y  L  *  L  S  D  F  A  V  E  I  C  A  V  K  Y  *  *  I  Y  L  C  I  N  G  K  Q  V  F  Q  G  N  K  F  H  K  *  C  F  K  L  F  *  K  L  S  I  S  F  R  R  F  G  G  S  N  Q  Q  F  *  *  Q  V  F  H  W  R  G  C  I  W  E  G  L  Q  G  C  F  A  *  W  N  K  G  R  P  E  K  A  K  S  *  L  P  A  R  Y  *  R  V  R  N  R  N  W  D  T  L  T  P  *  P  S  A  S  G  F  I  D  R  I  L  *  *  K  K  *  D  G  S  N  L  *  L  H  G  E  W  E  P  Q  E  P  F  D  W  L  R  S  T  L  H  E  L  G  A  E  A  G  D  M  H  R  G  S  Q  R  S  T  L  P  S  Y  *  R  S  Y  A  S  *  C  Q  I  F  K  H  I  A  *  *  E  F  C  A  K  N  Y  *  L  W  T  I  Q  D  K  A  S  A  L  S  N  H  R  R  E  R  N  F  R  L  H  *  P  *  I  F  Y  K  G  T  T  Y  R  K  I  *  C  L  F  F  R  C  C  F  I  *  S  S  L  C  *  V  C  H  G  S  I  S  S  K  G  D  G  *  F  S  *  M  G  S  G  V  A  *  *  W  T  V  G  T  N  R  R  S  Q  S  C  R  *  N  K  T  R  V  P  Q  E  V  W  R  N  S  G  K  M  L  S  F  V  *  *  R  *  A  I  N  G  *  C  V  V  E  T  G  V  C  T  S  S  P  R  V  C  Y  L  R  Y  F  C  F  S  E  F  Y  I  E  R  *  T  L  K  T  *  I  A  I  P  V  D  P  S  F  I  L  L  G  A  S  G  C  Y  T  Y  C  I  W  F  L  L  S  C  S  D  I  F  L  L  *  R  G  K  K  E  V  C  C  F  D  I  V  I  *  N  Y  I  H  S  T  F  R  M  E  L  *  K  F  V  E  Q  F  *  M  L  L  N  L  F  T  K  *  L  L  *  S  N  N  G  Y  N  I  *  P  L  L  S  N  I  F  V  V  V  L  P  K  S  I  S  G  K  V  I  F  F  S  V  L  S  S  T  I  A  I  N  L  S  V  F  S  L  N  F  L  S  C  G  I  I  R  G  S  S  S  L  L  F  L  Y  T  Y  I  C  D  F  H  L  S  C  L  L  L  G  V  H  I  A  *  *  E  F  C  G  K  N  Y  *  F  W  T  I  Q  E  S  L  I  K  P  M  L  P  Q  *  K  R  E  L  L  V  I  L  T  L  N  I  I  K  L  V  C  *  Q  K  N  L  M  F  I  L  S  V  L  F  Y  *  K  F  F  V  L  G  L  R  W  I  H  L  V  R  G  R  W  S  A  *  L  N  G  Q  R  S  V  R  R  T  D  S  Q  N  E  L  *  I  P  I  L  L  A  K  *  D  Q  I  P  S  G  G  L  E  K  Q  R  *  N  A  *  L  K  L  A  *  T  G  H  Q  W  V  R  C  C  R  N  W  T  M  H  F  I  S  K  S  L  S  F  K  K  T  L  P  S  L  F  A  S  K  S  M  I  S  V  M  L  M  T  L  P  L  L  L  R  S  K  L  G  *  S  L  V  *  M  :  R  S  D  F  A  Q  E  N  S  R  E  K  F  N  *  W  L  H  S  M  G  T  N  Y  S  K  P  T  T  S  I  N  D  A  S  N  L  S  N  R  V  P  F  E  S  F  R  V  P  F  V  D  L  Q  E  A  T  N  N  F  D  D  K  F  L  I  G  V  G  I  F  G  K  V  Y  R  G  V  L  R  D  G  T  K  V  A  L  K  R  R  K  P  E  S  P  Q  G  I  E  E  F  R  T  E  I </second_frame>
            <third_frame>   L  T  V  K  K  V  A  I  I  I  Q  R  Q  R  Q  L  H  S  K  T  C  Q  S  L  L  Q  I  S  I  A  L  V  M  L  L  L  *  L  R  F  L  *  I  R  V  H  F  F  F  *  I  M  R  F  T  C  N  S  P  I  L  L  *  K  F  A  L  S  N  T  S  R  F  I  Y  V  L  M  G  S  K  Y  S  K  A  T  N  S  I  S  D  A  S  N  S  F  E  S  Y  R  F  P  L  E  D  L  E  E  A  T  N  N  F  D  D  K  F  F  I  G  E  G  A  F  G  K  V  Y  K  G  V  L  R  D  G  T  K  V  A  L  K  R  Q  N  R  D  S  R  Q  G  I  E  E  F  G  T  E  I  G  I  L  S  R  R  S  H  P  H  L  V  S  L  I  G  Y  C  D  E  R  N  E  M  V  L  I  Y  D  Y  M  E  N  G  N  L  K  S  H  L  T  G  S  D  L  P  S  M  S  W  E  Q  R  L  E  I  C  I  G  A  A  R  G  L  H  Y  L  H  T  N  G  V  M  H  R  D  V  K  S  S  N  I  L  L  D  E  N  F  V  P  K  I  T  D  F  G  L  S  K  T  R  P  Q  L  Y  Q  T  T  D  V  K  G  T  F  G  Y  I  D  P  E  Y  F  I  K  G  R  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  F  E  V  L  C  A  R  S  A  M  V  Q  S  L  P  R  E  M  V  N  L  A  E  W  A  V  E  S  H  N  N  G  Q  L  E  Q  I  V  D  P  N  L  A  D  K  I  R  P  E  S  L  R  K  F  G  E  T  A  V  K  C  L  A  L  S  S  E  D  R  P  S  M  G  D  V  L  W  K  L  E  Y  A  L  R  L  Q  E  S  V  I  *  D  I  F  V  F  L  S  F  I  *  K  G  K  L  *  K  L  E  L  L  Y  L  W  I  L  L  S  F  Y  *  V  R  P  A  V  T  H  I  V  Y  G  S  Y  *  V  V  Q  T  F  S  Y  C  K  E  A  K  R  K  F  A  A  L  T  *  S  S  K  T  I  Y  I  Q  L  S  E  W  N  Y  K  S  L  W  S  N  S  K  C  Y  S  T  C  S  Q  N  D  Y  C  R  A  I  M  V  I  I  Y  N  H  Y  *  V  I  F  L  *  *  Y  C  P  S  P  L  A  E  R  *  F  S  F  R  F  S  L  P  Q  *  L  S  I  S  L  S  S  R  *  I  S  S  V  V  V  *  S  E  V  P  Q  A  F  C  F  C  I  H  I  F  V  I  F  I  Y  H  A  Y  C  *  E  F  I  L  L  D  E  N  F  V  A  K  I  T  D  F  G  R  F  K  K  A  *  S  N  P  C  Y  H  N  R  K  G  N  F  W  L  S  *  P  *  I  L  S  N  *  S  A  D  R  K  I  *  C  L  F  F  R  C  C  F  I  R  S  S  L  C  *  A  C  A  G  F  T  S  F  E  G  D  G  Q  L  S  *  M  G  K  G  V  S  D  E  R  T  V  K  T  N  Y  R  S  Q  S  C  W  Q  N  K  T  R  F  P  R  E  V  W  R  N  S  G  E  M  L  S  *  N  W  R  R  L  A  I  N  G  *  G  A  A  E  T  G  L  C  T  S  S  L  R  A  C  H  S  R  K  H  C  H  P  Y  S  R  A  N  Q  *  F  Q  S  C  *  *  H  F  L  C  C  F  G  Q  N  W  A  D  L  *  Y  E  C :   V  Q  I  L  L  K  K  T  A  G  R  S  S  I  N  G  C  T  P  W  E  P  T  I  P  S  Q  Q  L  P  *  M  M  L  P  I  *  V  I  A  F  L  L  K  V  F  E  F  L  L  *  I  C  R  K  Q  L  I  T  L  M  T  S  F  *  L  E  W  V  Y  L  V  R  F  T  G  V  F  C  V  M  V  Q  R  W  P  *  K  D  V  S  L  S  L  H  K  V  L  K  S  S  E  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127988" stop="128965"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFALSNTSRFIYVLMGSKYSKATNSISDASNSFESYRFPLEDLEEATNNFDDKFFIGEGAFGKVYKGVLRDGTKVALKRQNRDSRQGIEEFGTEIGILSRRSHPHLVSLIGYCDERNEMVLIYDYMENGNLKSHLTGSDLPSMSWEQRLEICIGAARGLHYLHTNGVMHRDVKSSNILLDENFVPKITDFGLSKTRPQLYQTTDVKGTFGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAMVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYALRLQESVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129465" stop="129932"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSIMLTVRSSYCLMRILWQKLLILDDSRKLDQTHVTTIEKGTFGYLDPEYYQTSLLTEKSDVYSFGVVLLEVLCARPALDSPRSREMVSLVKWAKECQTNGQSKRIIDPNLVGKIRPDSLGRFGETAVKCLAETGVDWPSMGEVLQKLDYALHL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131169" stop="131438"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLHSMGTNYSKPTTSINDASNLSNRVPFESFRVPFVDLQEATNNFDDKFLIGVGIFGKVYRGVLRDGTKVALKRRKPESPQGIEEFRTEI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="127797" e_stop="129694"/>
            <exon e_start="131894" e_stop="132151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.797" e_score="0.910"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="127797" e_stop="129694" e_length="1898"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.797">
            <gDNA_intron_boundary i_start="129695" i_stop="131893" i_length="2199"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="131894" e_stop="132151" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127797" stop="128554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127867" stop="128500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127873" stop="128338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127914" stop="128410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128481" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128564" stop="129160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128592" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128630" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128731" stop="129196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128739" stop="129037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128771" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128778" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128833" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128855" stop="129239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129010" stop="129577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129399" stop="129694"/>
              <exon start="131894" stop="132151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252617" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTAACAGTGAAAAAAGTTGCAATAATTATCCAAAGGCAAAGGCAGCTGCACAGTAAAACTTGTCAGTCTCTCCTCCAAATCTCCATTGCTCTGGTAATGTTATTGCTGTAGTTGAGATTTTTGTGAATTAGGGTTCATTTTTTCTTTTGAATCATGAGATTTACTTGTAACTCTCCGATTTTGCTGTAGAAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAATGAGATGGTTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGACTGGCTCAGATCTACCCTCCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAACGGAGTTATGCATCGTGATGTCAAATCTTCAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGACTTTGGACTATCCAAGACAAGGCCTCAGCTTTATCAAACCACAGACGTGAAAGGAACTTTCGGCTACATTGACCCTGAATATTTTATAAAGGGACGACTTACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTTGAAGTTCTTTGTGCTAGGTCTGCCATGGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAGAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTTCATTTTATTAGGTGCGTCCGGCTGTTACACATATTGTATATGGTTCTTATTAAGTTGTTCAGACATTTTCTTATTGTAAAGAGGCAAAAAGGAAGTTTGCTGCTTTGACATAGTCATCTAAAACTATATACATTCAACTTTCAGAATGGAACTATAAAAGTTTGTGGAGCAATTCTAAATGTTACTCAACCTGTTCACAAAATGACTATTGTAGAGCAATAATGGTTATAATATATAACCATTATTGAGTAATATTTTTGTAGTAGTATTGCCCAAGTCCATTAGCGGAAAGGTAATTTTCTTTTCGGTTCTCTCTTCCACAATAGCTATCAATCTCTCTGTCTTCTCGCTAAATTTCCTCAGTTGTGGTATAATCAGAGGTTCCTCAAGCCTTCTGTTTTTGTATACATATATTTGTGATTTTCATCTATCATGCTTACTGTTAGGAGTTCATATTGCTTGATGAGAATTTTGTGGCAAAAATTACTGATTTTGGACGATTCAAGAAAGCTTGATCAAACCCATGTTACCACAATAGAAAAGGGAACTTTTGGTTATCTTGACCCTGAATATTATCAAACTAGTCTGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTAGAAGTTCTTTGTGCTAG : GCCTGCCATAGGTCGTTCACATATGATCAGTTTAGCTGAATGGGCAGTAGAGACGCAGAAGATGGGACAGTTGGAACAAATTGTAGATCCCACTATTGTGGCCAAAATAAGACCAGAGTCCCTCAGGATGTTTGGAGAAACGGCAGTGAAATGCTTAGCTTCATCTAGTGAAAATAGGCCATCAATGGGTGATGTGCTGTGGAAACTGGAGTATGCACTTCATCTCCAAGAGCCTATCATTCAAGATAATCCTGAATG</gDNA_template>
            <first_frame> Y  *  Q  *  K  K  L  Q  *  L  S  K  G  K  G  S  C  T  V  K  L  V  S  L  S  S  K  S  P  L  L  W  *  C  Y  C  C  S  *  D  F  C  E  L  G  F  I  F  S  F  E  S  *  D  L  L  V  T  L  R  F  C  C  R  N  L  R  C  Q  I  L  V  D  L  F  M  Y  *  W  E  A  S  I  P  R  Q  Q  I  P  *  V  M  L  Q  T  L  L  K  V  I  D  F  L  *  K  I  W  R  K  Q  P  T  I  L  M  T  S  F  S  L  E  R  V  H  L  G  R  F  T  R  V  F  C  V  M  E  Q  R  S  P  *  K  G  K  I  V  T  P  G  K  V  L  K  S  S  E  Q  K  L  G  Y  S  H  A  V  A  I  R  I  W  F  H  *  *  D  T  V  M  K  E  M  R  W  F  *  F  M  T  T  W  R  M  G  T  S  R  A  I  *  L  A  Q  I  Y  P  P  *  A  G  S  R  G  W  R  Y  A  *  G  Q  P  E  V  Y  T  T  F  I  L  T  E  L  C  I  V  M  S  N  L  Q  T  Y  C  L  M  R  I  L  C  Q  K  L  L  T  L  D  Y  P  R  Q  G  L  S  F  I  K  P  Q  T  *  K  E  L  S  A  T  L  T  L  N  I  L  *  R  D  D  L  Q  K  N  L  M  F  I  L  S  V  L  F  Y  L  K  F  F  V  L  G  L  P  W  F  N  L  F  Q  G  R  W  L  I  *  L  N  G  Q  W  S  R  I  I  M  D  S  W  N  K  S  *  I  P  I  L  Q  I  K  *  D  Q  S  P  S  G  S  L  E  K  Q  R  *  N  A  *  L  C  L  V  K  I  G  H  Q  W  V  M  C  C  G  N  W  S  M  H  F  V  S  K  S  L  L  F  K  I  F  L  F  F  *  V  L  Y  R  K  V  N  F  E  N  L  N  C  Y  T  C  G  S  F  F  H  F  I  R  C  V  R  L  L  H  I  L  Y  M  V  L  I  K  L  F  R  H  F  L  I  V  K  R  Q  K  G  S  L  L  L  *  H  S  H  L  K  L  Y  T  F  N  F  Q  N  G  T  I  K  V  C  G  A  I  L  N  V  T  Q  P  V  H  K  M  T  I  V  E  Q  *  W  L  *  Y  I  T  I  I  E  *  Y  F  C  S  S  I  A  Q  V  H  *  R  K  G  N  F  L  F  G  S  L  F  H  N  S  Y  Q  S  L  C  L  L  A  K  F  P  Q  L  W  Y  N  Q  R  F  L  K  P  S  V  F  V  Y  I  Y  L  *  F  S  S  I  M  L  T  V  R  S  S  Y  C  L  M  R  I  L  W  Q  K  L  L  I  L  D  D  S  R  K  L  D  Q  T  H  V  T  T  I  E  K  G  T  F  G  Y  L  D  P  E  Y  Y  Q  T  S  L  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  L  E  V  L  C  A  R :   P  A  I  G  R  S  H  M  I  S  L  A  E  W  A  V  E  T  Q  K  M  G  Q  L  E  Q  I  V  D  P  T  I  V  A  K  I  R  P  E  S  L  R  M  F  G  E  T  A  V  K  C  L  A  S  S  S  E  N  R  P  S  M  G  D  V  L  W  K  L  E  Y  A  L  H  L  Q  E  P  I  I  Q  D  N  P  E   </first_frame>
            <second_frame>  I  N  S  E  K  S  C  N  N  Y  P  K  A  K  A  A  A  Q  *  N  L  S  V  S  P  P  N  L  H  C  S  G  N  V  I  A  V  V  E  I  F  V  N  *  G  S  F  F  L  L  N  H  E  I  Y  L  *  L  S  D  F  A  V  E  I  C  A  V  K  Y  *  *  I  Y  L  C  I  N  G  K  Q  V  F  Q  G  N  K  F  H  K  *  C  F  K  L  F  *  K  L  S  I  S  F  R  R  F  G  G  S  N  Q  Q  F  *  *  Q  V  F  H  W  R  G  C  I  W  E  G  L  Q  G  C  F  A  *  W  N  K  G  R  P  E  K  A  K  S  *  L  P  A  R  Y  *  R  V  R  N  R  N  W  D  T  L  T  P  *  P  S  A  S  G  F  I  D  R  I  L  *  *  K  K  *  D  G  S  N  L  *  L  H  G  E  W  E  P  Q  E  P  F  D  W  L  R  S  T  L  H  E  L  G  A  E  A  G  D  M  H  R  G  S  Q  R  S  T  L  P  S  Y  *  R  S  Y  A  S  *  C  Q  I  F  K  H  I  A  *  *  E  F  C  A  K  N  Y  *  L  W  T  I  Q  D  K  A  S  A  L  S  N  H  R  R  E  R  N  F  R  L  H  *  P  *  I  F  Y  K  G  T  T  Y  R  K  I  *  C  L  F  F  R  C  C  F  I  *  S  S  L  C  *  V  C  H  G  S  I  S  S  K  G  D  G  *  F  S  *  M  G  S  G  V  A  *  *  W  T  V  G  T  N  R  R  S  Q  S  C  R  *  N  K  T  R  V  P  Q  E  V  W  R  N  S  G  K  M  L  S  F  V  *  *  R  *  A  I  N  G  *  C  V  V  E  T  G  V  C  T  S  S  P  R  V  C  Y  L  R  Y  F  C  F  S  E  F  Y  I  E  R  *  T  L  K  T  *  I  A  I  P  V  D  P  S  F  I  L  L  G  A  S  G  C  Y  T  Y  C  I  W  F  L  L  S  C  S  D  I  F  L  L  *  R  G  K  K  E  V  C  C  F  D  I  V  I  *  N  Y  I  H  S  T  F  R  M  E  L  *  K  F  V  E  Q  F  *  M  L  L  N  L  F  T  K  *  L  L  *  S  N  N  G  Y  N  I  *  P  L  L  S  N  I  F  V  V  V  L  P  K  S  I  S  G  K  V  I  F  F  S  V  L  S  S  T  I  A  I  N  L  S  V  F  S  L  N  F  L  S  C  G  I  I  R  G  S  S  S  L  L  F  L  Y  T  Y  I  C  D  F  H  L  S  C  L  L  L  G  V  H  I  A  *  *  E  F  C  G  K  N  Y  *  F  W  T  I  Q  E  S  L  I  K  P  M  L  P  Q  *  K  R  E  L  L  V  I  L  T  L  N  I  I  K  L  V  C  *  Q  K  N  L  M  F  I  L  S  V  L  F  Y  *  K  F  F  V  L   : G  L  P  *  V  V  H  I  *  S  V  *  L  N  G  Q  *  R  R  R  R  W  D  S  W  N  K  L  *  I  P  L  L  W  P  K  *  D  Q  S  P  S  G  C  L  E  K  R  Q  *  N  A  *  L  H  L  V  K  I  G  H  Q  W  V  M  C  C  G  N  W  S  M  H  F  I  S  K  S  L  S  F  K  I  I  L  N  </second_frame>
            <third_frame>   L  T  V  K  K  V  A  I  I  I  Q  R  Q  R  Q  L  H  S  K  T  C  Q  S  L  L  Q  I  S  I  A  L  V  M  L  L  L  *  L  R  F  L  *  I  R  V  H  F  F  F  *  I  M  R  F  T  C  N  S  P  I  L  L  *  K  F  A  L  S  N  T  S  R  F  I  Y  V  L  M  G  S  K  Y  S  K  A  T  N  S  I  S  D  A  S  N  S  F  E  S  Y  R  F  P  L  E  D  L  E  E  A  T  N  N  F  D  D  K  F  F  I  G  E  G  A  F  G  K  V  Y  K  G  V  L  R  D  G  T  K  V  A  L  K  R  Q  N  R  D  S  R  Q  G  I  E  E  F  G  T  E  I  G  I  L  S  R  R  S  H  P  H  L  V  S  L  I  G  Y  C  D  E  R  N  E  M  V  L  I  Y  D  Y  M  E  N  G  N  L  K  S  H  L  T  G  S  D  L  P  S  M  S  W  E  Q  R  L  E  I  C  I  G  A  A  R  G  L  H  Y  L  H  T  N  G  V  M  H  R  D  V  K  S  S  N  I  L  L  D  E  N  F  V  P  K  I  T  D  F  G  L  S  K  T  R  P  Q  L  Y  Q  T  T  D  V  K  G  T  F  G  Y  I  D  P  E  Y  F  I  K  G  R  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  F  E  V  L  C  A  R  S  A  M  V  Q  S  L  P  R  E  M  V  N  L  A  E  W  A  V  E  S  H  N  N  G  Q  L  E  Q  I  V  D  P  N  L  A  D  K  I  R  P  E  S  L  R  K  F  G  E  T  A  V  K  C  L  A  L  S  S  E  D  R  P  S  M  G  D  V  L  W  K  L  E  Y  A  L  R  L  Q  E  S  V  I  *  D  I  F  V  F  L  S  F  I  *  K  G  K  L  *  K  L  E  L  L  Y  L  W  I  L  L  S  F  Y  *  V  R  P  A  V  T  H  I  V  Y  G  S  Y  *  V  V  Q  T  F  S  Y  C  K  E  A  K  R  K  F  A  A  L  T  *  S  S  K  T  I  Y  I  Q  L  S  E  W  N  Y  K  S  L  W  S  N  S  K  C  Y  S  T  C  S  Q  N  D  Y  C  R  A  I  M  V  I  I  Y  N  H  Y  *  V  I  F  L  *  *  Y  C  P  S  P  L  A  E  R  *  F  S  F  R  F  S  L  P  Q  *  L  S  I  S  L  S  S  R  *  I  S  S  V  V  V  *  S  E  V  P  Q  A  F  C  F  C  I  H  I  F  V  I  F  I  Y  H  A  Y  C  *  E  F  I  L  L  D  E  N  F  V  A  K  I  T  D  F  G  R  F  K  K  A  *  S  N  P  C  Y  H  N  R  K  G  N  F  W  L  S  *  P  *  I  L  S  N  *  S  A  D  R  K  I  *  C  L  F  F  R  C  C  F  I  R  S  S  L  C  *  :  A  C  H  R  S  F  T  Y  D  Q  F  S  *  M  G  S  R  D  A  E  D  G  T  V  G  T  N  C  R  S  H  Y  C  G  Q  N  K  T  R  V  P  Q  D  V  W  R  N  G  S  E  M  L  S  F  I  *  *  K  *  A  I  N  G  *  C  A  V  E  T  G  V  C  T  S  S  P  R  A  Y  H  S  R  *  S  *  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127988" stop="128965"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFALSNTSRFIYVLMGSKYSKATNSISDASNSFESYRFPLEDLEEATNNFDDKFFIGEGAFGKVYKGVLRDGTKVALKRQNRDSRQGIEEFGTEIGILSRRSHPHLVSLIGYCDERNEMVLIYDYMENGNLKSHLTGSDLPSMSWEQRLEICIGAARGLHYLHTNGVMHRDVKSSNILLDENFVPKITDFGLSKTRPQLYQTTDVKGTFGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAMVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYALRLQESVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129465" stop="129694"/>
                    <exon start="131894" stop="132149"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSIMLTVRSSYCLMRILWQKLLILDDSRKLDQTHVTTIEKGTFGYLDPEYYQTSLLTEKSDVYSFGVVLLEVLCARPAIGRSHMISLAEWAVETQKMGQLEQIVDPTIVAKIRPESLRMFGETAVKCLASSSENRPSMGDVLWKLEYALHLQEPIIQDNPE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="127739" e_stop="127891"/>
            <exon e_start="127988" e_stop="130053"/>
            <exon e_start="131124" e_stop="131438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.822" acc_prob="0.420" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.917" e_score="0.934"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127739" e_stop="127891" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.822" acc_prob="0.420">
            <gDNA_intron_boundary i_start="127892" i_stop="127987" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="127988" e_stop="130053" e_length="2066"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.917">
            <gDNA_intron_boundary i_start="130054" i_stop="131123" i_length="1070"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="131124" e_stop="131438" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127739" stop="127891"/>
              <exon start="127988" stop="128567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127739" stop="127891"/>
              <exon start="127988" stop="128416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128081" stop="130053"/>
              <exon start="131124" stop="131438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E741112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128481" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128564" stop="129160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128592" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128630" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128731" stop="129196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128739" stop="129037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128771" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128778" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128833" stop="129044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128855" stop="129239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129010" stop="129577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129536" stop="130053"/>
              <exon start="131124" stop="131224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129749" stop="130053"/>
              <exon start="131124" stop="131336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228193" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAAAATCAAACTATAAAAATTTTTAATAAATATTTTATAATATATTTATTTATTATATTAACAGTGAAAAAAGTTGCAATAATTATCCAAAGGCAAAGGCAGCTGCACAGTAAAACTTGTCAGTCTCTCCTCCAAATCTCCATTGCTCTG : AAATTTGCGCTGTCAAATACTAGTAGATTTATTTATGTATTAATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAGTGATGCTTCAAACTCTTTTGAAAGTTATCGATTTCCTTTAGAAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGCATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGGCAAAATCGTGACTCCCGGCAAGGTATTGAAGAGTTCGGAACAGAAATTGGGATACTCTCACGCCGTAGCCATCCGCATCTGGTTTCATTGATAGGATACTGTGATGAAAGAAATGAGATGGTTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGACTGGCTCAGATCTACCCTCCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAACGGAGTTATGCATCGTGATGTCAAATCTTCAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGACTTTGGACTATCCAAGACAAGGCCTCAGCTTTATCAAACCACAGACGTGAAAGGAACTTTCGGCTACATTGACCCTGAATATTTTATAAAGGGACGACTTACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTTGAAGTTCTTTGTGCTAGGTCTGCCATGGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAAGATATTTTTGTTTTTCTGAGTTTTATATAGAAAGGTAAACTTTGAAAACTTGAATTGCTATACCTGTGGATCCTTCTTTCATTTTATTAGGTGCGTCCGGCTGTTACACATATTGTATATGGTTCTTATTAAGTTGTTCAGACATTTTCTTATTGTAAAGAGGCAAAAAGGAAGTTTGCTGCTTTGACATAGTCATCTAAAACTATATACATTCAACTTTCAGAATGGAACTATAAAAGTTTGTGGAGCAATTCTAAATGTTACTCAACCTGTTCACAAAATGACTATTGTAGAGCAATAATGGTTATAATATATAACCATTATTGAGTAATATTTTTGTAGTAGTATTGCCCAAGTCCATTAGCGGAAAGGTAATTTTCTTTTCGGTTCTCTCTTCCACAATAGCTATCAATCTCTCTGTCTTCTCGCTAAATTTCCTCAGTTGTGGTATAATCAGAGGTTCCTCAAGCCTTCTGTTTTTGTATACATATATTTGTGATTTTCATCTATCATGCTTACTGTTAGGAGTTCATATTGCTTGATGAGAATTTTGTGGCAAAAATTACTGATTTTGGACGATTCAAGAAAGCTTGATCAAACCCATGTTACCACAATAGAAAAGGGAACTTTTGGTTATCTTGACCCTGAATATTATCAAACTAGTCTGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTAGAAGTTCTTTGTGCTAGGCCTGCGCTGGATTCACCTCGTTCGAGGGAGATGGTCAGCTTAGTTAAATGGGCAAAGGAGTGTCAGACGAACGGACAGTCAAAACGAATTATAGATCCCAATCTTGTTGGCAAAATAAGACCAGATTCCCTCGGGAGGTTTGGAGAAACAGCGGTGAAATGCTTAGCTGAAACTGGCGTAGACTGGCCATCAATGGGTGAGGTGCTGCAGAAACTGGACTATGCACTTCATCTCTAAGAGCCTGTCATTCAAGAAAACACTGCCATCCCTATTCGCGAGCAAATCAATGATTTCAGTCATGTTGATGACACTTCCTCTGCTGCTTCGGTCAAAATTGGGCTGATCTCTAGTATGAATG : CGTTCAGATTTTGCTCAAGAAAACAGCCGGGAGAAGTTCAATTAATGGTTGCACTCCATGGGAACCAACTATTCCAAGCCAACAACTTCCATAAATGATGCTTCCAATTTGAGTAATCGCGTTCCTTTTGAAAGTTTTCGAGTTCCTTTTGTAGATTTGCAGGAAGCAACTAATAACTTTGATGACAAGTTTCTGATTGGAGTGGGTATATTTGGTAAGGTTTACAGGGGTGTTTTGCGTGATGGTACAAAGGTGGCCCTGAAAAGACGTAAGCCTGAGTCTCCACAAGGTATTGAAGAGTTCCGAACAGAAATT</gDNA_template>
            <first_frame> F  *  N  Q  T  I  K  I  F  N  K  Y  F  I  I  Y  L  F  I  I  L  T  V  K  K  V  A  I  I  I  Q  R  Q  R  Q  L  H  S  K  T  C  Q  S  L  L  Q  I  S  I  A  L  :  K  F  A  L  S  N  T  S  R  F  I  Y  V  L  M  G  S  K  Y  S  K  A  T  N  S  I  S  D  A  S  N  S  F  E  S  Y  R  F  P  L  E  D  L  E  E  A  T  N  N  F  D  D  K  F  F  I  G  E  G  A  F  G  K  V  Y  K  G  V  L  R  D  G  T  K  V  A  L  K  R  Q  N  R  D  S  R  Q  G  I  E  E  F  G  T  E  I  G  I  L  S  R  R  S  H  P  H  L  V  S  L  I  G  Y  C  D  E  R  N  E  M  V  L  I  Y  D  Y  M  E  N  G  N  L  K  S  H  L  T  G  S  D  L  P  S  M  S  W  E  Q  R  L  E  I  C  I  G  A  A  R  G  L  H  Y  L  H  T  N  G  V  M  H  R  D  V  K  S  S  N  I  L  L  D  E  N  F  V  P  K  I  T  D  F  G  L  S  K  T  R  P  Q  L  Y  Q  T  T  D  V  K  G  T  F  G  Y  I  D  P  E  Y  F  I  K  G  R  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  F  E  V  L  C  A  R  S  A  M  V  Q  S  L  P  R  E  M  V  N  L  A  E  W  A  V  E  S  H  N  N  G  Q  L  E  Q  I  V  D  P  N  L  A  D  K  I  R  P  E  S  L  R  K  F  G  E  T  A  V  K  C  L  A  L  S  S  E  D  R  P  S  M  G  D  V  L  W  K  L  E  Y  A  L  R  L  Q  E  S  V  I  *  D  I  F  V  F  L  S  F  I  *  K  G  K  L  *  K  L  E  L  L  Y  L  W  I  L  L  S  F  Y  *  V  R  P  A  V  T  H  I  V  Y  G  S  Y  *  V  V  Q  T  F  S  Y  C  K  E  A  K  R  K  F  A  A  L  T  *  S  S  K  T  I  Y  I  Q  L  S  E  W  N  Y  K  S  L  W  S  N  S  K  C  Y  S  T  C  S  Q  N  D  Y  C  R  A  I  M  V  I  I  Y  N  H  Y  *  V  I  F  L  *  *  Y  C  P  S  P  L  A  E  R  *  F  S  F  R  F  S  L  P  Q  *  L  S  I  S  L  S  S  R  *  I  S  S  V  V  V  *  S  E  V  P  Q  A  F  C  F  C  I  H  I  F  V  I  F  I  Y  H  A  Y  C  *  E  F  I  L  L  D  E  N  F  V  A  K  I  T  D  F  G  R  F  K  K  A  *  S  N  P  C  Y  H  N  R  K  G  N  F  W  L  S  *  P  *  I  L  S  N  *  S  A  D  R  K  I  *  C  L  F  F  R  C  C  F  I  R  S  S  L  C  *  A  C  A  G  F  T  S  F  E  G  D  G  Q  L  S  *  M  G  K  G  V  S  D  E  R  T  V  K  T  N  Y  R  S  Q  S  C  W  Q  N  K  T  R  F  P  R  E  V  W  R  N  S  G  E  M  L  S  *  N  W  R  R  L  A  I  N  G  *  G  A  A  E  T  G  L  C  T  S  S  L  R  A  C  H  S  R  K  H  C  H  P  Y  S  R  A  N  Q  *  F  Q  S  C  *  *  H  F  L  C  C  F  G  Q  N  W  A  D  L  *  Y  E  C :   V  Q  I  L  L  K  K  T  A  G  R  S  S  I  N  G  C  T  P  W  E  P  T  I  P  S  Q  Q  L  P  *  M  M  L  P  I  *  V  I  A  F  L  L  K  V  F  E  F  L  L  *  I  C  R  K  Q  L  I  T  L  M  T  S  F  *  L  E  W  V  Y  L  V  R  F  T  G  V  F  C  V  M  V  Q  R  W  P  *  K  D  V  S  L  S  L  H  K  V  L  K  S  S  E  Q  K   </first_frame>
            <second_frame>  F  K  I  K  L  *  K  F  L  I  N  I  L  *  Y  I  Y  L  L  Y  *  Q  *  K  K  L  Q  *  L  S  K  G  K  G  S  C  T  V  K  L  V  S  L  S  S  K  S  P  L  L  * :   N  L  R  C  Q  I  L  V  D  L  F  M  Y  *  W  E  A  S  I  P  R  Q  Q  I  P  *  V  M  L  Q  T  L  L  K  V  I  D  F  L  *  K  I  W  R  K  Q  P  T  I  L  M  T  S  F  S  L  E  R  V  H  L  G  R  F  T  R  V  F  C  V  M  E  Q  R  S  P  *  K  G  K  I  V  T  P  G  K  V  L  K  S  S  E  Q  K  L  G  Y  S  H  A  V  A  I  R  I  W  F  H  *  *  D  T  V  M  K  E  M  R  W  F  *  F  M  T  T  W  R  M  G  T  S  R  A  I  *  L  A  Q  I  Y  P  P  *  A  G  S  R  G  W  R  Y  A  *  G  Q  P  E  V  Y  T  T  F  I  L  T  E  L  C  I  V  M  S  N  L  Q  T  Y  C  L  M  R  I  L  C  Q  K  L  L  T  L  D  Y  P  R  Q  G  L  S  F  I  K  P  Q  T  *  K  E  L  S  A  T  L  T  L  N  I  L  *  R  D  D  L  Q  K  N  L  M  F  I  L  S  V  L  F  Y  L  K  F  F  V  L  G  L  P  W  F  N  L  F  Q  G  R  W  L  I  *  L  N  G  Q  W  S  R  I  I  M  D  S  W  N  K  S  *  I  P  I  L  Q  I  K  *  D  Q  S  P  S  G  S  L  E  K  Q  R  *  N  A  *  L  C  L  V  K  I  G  H  Q  W  V  M  C  C  G  N  W  S  M  H  F  V  S  K  S  L  L  F  K  I  F  L  F  F  *  V  L  Y  R  K  V  N  F  E  N  L  N  C  Y  T  C  G  S  F  F  H  F  I  R  C  V  R  L  L  H  I  L  Y  M  V  L  I  K  L  F  R  H  F  L  I  V  K  R  Q  K  G  S  L  L  L  *  H  S  H  L  K  L  Y  T  F  N  F  Q  N  G  T  I  K  V  C  G  A  I  L  N  V  T  Q  P  V  H  K  M  T  I  V  E  Q  *  W  L  *  Y  I  T  I  I  E  *  Y  F  C  S  S  I  A  Q  V  H  *  R  K  G  N  F  L  F  G  S  L  F  H  N  S  Y  Q  S  L  C  L  L  A  K  F  P  Q  L  W  Y  N  Q  R  F  L  K  P  S  V  F  V  Y  I  Y  L  *  F  S  S  I  M  L  T  V  R  S  S  Y  C  L  M  R  I  L  W  Q  K  L  L  I  L  D  D  S  R  K  L  D  Q  T  H  V  T  T  I  E  K  G  T  F  G  Y  L  D  P  E  Y  Y  Q  T  S  L  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  L  E  V  L  C  A  R  P  A  L  D  S  P  R  S  R  E  M  V  S  L  V  K  W  A  K  E  C  Q  T  N  G  Q  S  K  R  I  I  D  P  N  L  V  G  K  I  R  P  D  S  L  G  R  F  G  E  T  A  V  K  C  L  A  E  T  G  V  D  W  P  S  M  G  E  V  L  Q  K  L  D  Y  A  L  H  L  *  E  P  V  I  Q  E  N  T  A  I  P  I  R  E  Q  I  N  D  F  S  H  V  D  D  T  S  S  A  A  S  V  K  I  G  L  I  S  S  M  N   : A  F  R  F  C  S  R  K  Q  P  G  E  V  Q  L  M  V  A  L  H  G  N  Q  L  F  Q  A  N  N  F  H  K  *  C  F  Q  F  E  *  S  R  S  F  *  K  F  S  S  S  F  C  R  F  A  G  S  N  *  *  L  *  *  Q  V  S  D  W  S  G  Y  I  W  *  G  L  Q  G  C  F  A  *  W  Y  K  G  G  P  E  K  T  *  A  *  V  S  T  R  Y  *  R  V  P  N  R  N  </second_frame>
            <third_frame>   L  K  S  N  Y  K  N  F  *  *  I  F  Y  N  I  F  I  Y  Y  I  N  S  E  K  S  C  N  N  Y  P  K  A  K  A  A  A  Q  *  N  L  S  V  S  P  P  N  L  H  C  S   : E  I  C  A  V  K  Y  *  *  I  Y  L  C  I  N  G  K  Q  V  F  Q  G  N  K  F  H  K  *  C  F  K  L  F  *  K  L  S  I  S  F  R  R  F  G  G  S  N  Q  Q  F  *  *  Q  V  F  H  W  R  G  C  I  W  E  G  L  Q  G  C  F  A  *  W  N  K  G  R  P  E  K  A  K  S  *  L  P  A  R  Y  *  R  V  R  N  R  N  W  D  T  L  T  P  *  P  S  A  S  G  F  I  D  R  I  L  *  *  K  K  *  D  G  S  N  L  *  L  H  G  E  W  E  P  Q  E  P  F  D  W  L  R  S  T  L  H  E  L  G  A  E  A  G  D  M  H  R  G  S  Q  R  S  T  L  P  S  Y  *  R  S  Y  A  S  *  C  Q  I  F  K  H  I  A  *  *  E  F  C  A  K  N  Y  *  L  W  T  I  Q  D  K  A  S  A  L  S  N  H  R  R  E  R  N  F  R  L  H  *  P  *  I  F  Y  K  G  T  T  Y  R  K  I  *  C  L  F  F  R  C  C  F  I  *  S  S  L  C  *  V  C  H  G  S  I  S  S  K  G  D  G  *  F  S  *  M  G  S  G  V  A  *  *  W  T  V  G  T  N  R  R  S  Q  S  C  R  *  N  K  T  R  V  P  Q  E  V  W  R  N  S  G  K  M  L  S  F  V  *  *  R  *  A  I  N  G  *  C  V  V  E  T  G  V  C  T  S  S  P  R  V  C  Y  L  R  Y  F  C  F  S  E  F  Y  I  E  R  *  T  L  K  T  *  I  A  I  P  V  D  P  S  F  I  L  L  G  A  S  G  C  Y  T  Y  C  I  W  F  L  L  S  C  S  D  I  F  L  L  *  R  G  K  K  E  V  C  C  F  D  I  V  I  *  N  Y  I  H  S  T  F  R  M  E  L  *  K  F  V  E  Q  F  *  M  L  L  N  L  F  T  K  *  L  L  *  S  N  N  G  Y  N  I  *  P  L  L  S  N  I  F  V  V  V  L  P  K  S  I  S  G  K  V  I  F  F  S  V  L  S  S  T  I  A  I  N  L  S  V  F  S  L  N  F  L  S  C  G  I  I  R  G  S  S  S  L  L  F  L  Y  T  Y  I  C  D  F  H  L  S  C  L  L  L  G  V  H  I  A  *  *  E  F  C  G  K  N  Y  *  F  W  T  I  Q  E  S  L  I  K  P  M  L  P  Q  *  K  R  E  L  L  V  I  L  T  L  N  I  I  K  L  V  C  *  Q  K  N  L  M  F  I  L  S  V  L  F  Y  *  K  F  F  V  L  G  L  R  W  I  H  L  V  R  G  R  W  S  A  *  L  N  G  Q  R  S  V  R  R  T  D  S  Q  N  E  L  *  I  P  I  L  L  A  K  *  D  Q  I  P  S  G  G  L  E  K  Q  R  *  N  A  *  L  K  L  A  *  T  G  H  Q  W  V  R  C  C  R  N  W  T  M  H  F  I  S  K  S  L  S  F  K  K  T  L  P  S  L  F  A  S  K  S  M  I  S  V  M  L  M  T  L  P  L  L  L  R  S  K  L  G  *  S  L  V  *  M  :  R  S  D  F  A  Q  E  N  S  R  E  K  F  N  *  W  L  H  S  M  G  T  N  Y  S  K  P  T  T  S  I  N  D  A  S  N  L  S  N  R  V  P  F  E  S  F  R  V  P  F  V  D  L  Q  E  A  T  N  N  F  D  D  K  F  L  I  G  V  G  I  F  G  K  V  Y  R  G  V  L  R  D  G  T  K  V  A  L  K  R  R  K  P  E  S  P  Q  G  I  E  E  F  R  T  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127745" stop="127891"/>
                    <exon start="127988" stop="128965"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1122</number_coding_nucleotides>
                  <number_encoded_amino_acids>374</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQTIKIFNKYFIIYLFIILTVKKVAIIIQRQRQLHSKTCQSLLQISIALKFALSNTSRFIYVLMGSKYSKATNSISDASNSFESYRFPLEDLEEATNNFDDKFFIGEGAFGKVYKGVLRDGTKVALKRQNRDSRQGIEEFGTEIGILSRRSHPHLVSLIGYCDERNEMVLIYDYMENGNLKSHLTGSDLPSMSWEQRLEICIGAARGLHYLHTNGVMHRDVKSSNILLDENFVPKITDFGLSKTRPQLYQTTDVKGTFGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAMVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYALRLQESVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129465" stop="129932"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSIMLTVRSSYCLMRILWQKLLILDDSRKLDQTHVTTIEKGTFGYLDPEYYQTSLLTEKSDVYSFGVVLLEVLCARPALDSPRSREMVSLVKWAKECQTNGQSKRIIDPNLVGKIRPDSLGRFGETAVKCLAETGVDWPSMGEVLQKLDYALHL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131169" stop="131438"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLHSMGTNYSKPTTSINDASNLSNRVPFESFRVPFVDLQEATNNFDDKFLIGVGIFGKVYRGVLRDGTKVALKRRKPESPQGIEEFRTEI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="140438" PGL_stop="140045"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140438" e_stop="140045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="140438" e_stop="140045" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140438" stop="140045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140434" stop="140073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCAGCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCATAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAATAGAAAGAAGTCCAACGGGCAGAAGTCAGAATAGGCCAAGAAGAAATTCAAAGGCAACTATTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  H  D  L  I  A  E  D  M  V  V  N  E  A  F  Q  V  A  A  M  I  E  K  C  L  L  R  G  M  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  S  S  R  L  R  K  I  T  E  M  P  K  R  S  R  I  R  V  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  I  E  R  S  P  T  G  R  S  Q  N  R  P  R  R  N  S  K  A  T  I  I  I  V  A  R  L  V  I  D  L  L  </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  L  F  K  W  L  Q  *  S  R  S  A  S  F  V  E  *  F  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  A  Q  D  *  G  R  *  Q  K  C  R  K  E  V  A  *  E  F  N  N  H  W  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  *  K  E  V  Q  R  A  E  V  R  I  G  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  A  G  T  S  T  Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  R  E  V  P  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  Q  L  K  I  E  E  D  N  R  N  A  E  K  K  S  H  K  S  S  T  I  I  G  V  N  I  V  E  E  A  P  T  K  D  K  N  R  K  K  S  N  G  Q  K  S  E  *  A  K  K  K  F  K  G  N  Y  Y  N  C  G  K  A  G  H  R  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140355" stop="140107"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSSGCNDREVPPSWNDFKNYLKHKRKEMKLEDLVIQLKIEEDNRNAEKKSHKSSTIIGVNIVEEAPTKDKNRKKSNGQKSE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140249" stop="140046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSRLRKITEMPKRSRIRVQQSLELILLKKLLPKTKIERSPTGRSQNRPRRNSKATIIIVARLVIDLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="140888" PGL_stop="141727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140888" e_stop="141727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="140888" e_stop="141727" e_length="840"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140888" stop="141727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140888" stop="141466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140889" stop="141298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTAATAATTTCCTTAAGATTGTTTCCAATCTGTGTTATAAAATCAGAAATTACTGGTTCTAATAAATCATTCAGAAACACAAAGTAACTGAGATTTTTTTTATAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTTAATTTGTAAAAACGTACCAGAATCTGGAATACTCTTATTGAAAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCAAGGTTTGATTTGGAATACAACCTCCCTGGGTAAAATGATTTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAATATATGTTTTTAAGAAAAAGGAAGATCAGAAAAAAAAAATTCGTAGGAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAGAATATATTCTAAAAGGTTGCAACCCTTTCAGAATTAACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGATATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTCATGGCGGGAAATTTTGAATATAACGGAATTTAAAATGGGTCACTCGAGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACATTTCGGTTAAATTCTGTTATCAACTAATTTATTGAAAATAATTTTTGGCCATTTAAAATTAATTAATAAATAATTAAAATAAATTTTGTCCAAAAAATTATCTCTCG</gDNA_template>
            <first_frame> N  I  I  A  D  L  K  E  Y  K  I  T  K  I  F  V  S  T  R  N  T  D  L  I  I  S  L  R  L  F  P  I  C  V  I  K  S  E  I  T  G  S  N  K  S  F  R  N  T  K  *  L  R  F  F  L  *  P  V  N  K  M  N  R  N  L  F  V  K  N  N  L  I  C  K  N  V  P  E  S  G  I  L  L  L  K  I  *  E  E  N  Q  V  H  *  I  H  S  V  P  L  R  K  L  F  P  S  S  I  Q  G  L  I  W  N  T  T  S  L  G  K  M  I  L  I  S  R  V  *  I  P  K  T  L  L  S  A  N  Q  S  T  A  G  K  Y  T  K  K  Y  M  F  L  R  K  R  K  I  R  K  K  K  F  V  G  N  I  L  K  T  E  W  Y  L  *  A  R  R  I  Y  S  K  R  L  Q  P  F  Q  N  *  H  D  H  *  *  K  V  A  N  F  Q  M  I  L  T  V  P  E  S  C  N  L  S  E  Q  S  W  R  E  I  L  N  I  T  E  F  K  M  G  H  S  S  G  S  E  S  G  R  V  N  *  K  V  E  N  I  S  V  K  F  C  Y  Q  L  I  Y  *  K  *  F  L  A  I  *  N  *  L  I  N  N  *  N  K  F  C  P  K  N  Y  L  S </first_frame>
            <second_frame>  I  *  L  Q  T  *  R  S  I  K  S  Q  R  F  L  S  P  P  E  T  Q  I  *  *  F  P  *  D  C  F  Q  S  V  L  *  N  Q  K  L  L  V  L  I  N  H  S  E  T  Q  S  N  *  D  F  F  Y  N  Q  *  I  R  *  T  E  I  Y  L  *  K  I  I  *  F  V  K  T  Y  Q  N  L  E  Y  S  Y  *  K  F  R  K  K  I  K  S  T  E  F  T  V  S  P  *  G  N  Y  S  P  L  V  S  K  V  *  F  G  I  Q  P  P  W  V  K  *  F  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  P  Q  Q  E  S  T  R  R  N  I  C  F  *  E  K  G  R  S  E  K  K  N  S  *  E  I  F  *  R  L  N  G  I  Y  R  Q  E  E  Y  I  L  K  G  C  N  P  F  R  I  N  T  T  I  N  E  R  L  Q  T  F  K  *  Y  *  L  F  L  K  V  A  T  F  Q  N  S  H  G  G  K  F  *  I  *  R  N  L  K  W  V  T  R  A  D  P  S  R  V  G  L  T  K  K  L  K  T  F  R  L  N  S  V  I  N  *  F  I  E  N  N  F  W  P  F  K  I  N  *  *  I  I  K  I  N  F  V  Q  K  I  I  S   </second_frame>
            <third_frame>   Y  N  C  R  L  K  G  V  *  N  H  K  D  F  C  L  H  Q  K  H  R  F  N  N  F  L  K  I  V  S  N  L  C  Y  K  I  R  N  Y  W  F  *  *  I  I  Q  K  H  K  V  T  E  I  F  F  I  T  S  K  *  D  E  Q  K  F  I  C  K  K  *  F  N  L  *  K  R  T  R  I  W  N  T  L  I  E  N  L  G  R  K  S  S  P  L  N  S  Q  C  P  L  K  E  I  I  P  L  *  Y  P  R  F  D  L  E  Y  N  L  P  G  *  N  D  F  N  Q  *  S  I  D  T  K  N  S  T  V  S  E  S  I  H  S  R  K  V  H  E  E  I  Y  V  F  K  K  K  E  D  Q  K  K  K  I  R  R  K  Y  S  E  D  *  M  V  F  I  G  K  K  N  I  F  *  K  V  A  T  L  S  E  L  T  R  P  L  M  K  G  C  K  L  S  N  D  I  D  C  S  *  K  L  Q  P  F  R  T  V  M  A  G  N  F  E  Y  N  G  I  *  N  G  S  L  E  R  I  R  V  G  S  G  *  L  K  S  *  K  H  F  G  *  I  L  L  S  T  N  L  L  K  I  I  F  G  H  L  K  L  I  N  K  *  L  K  *  I  L  S  K  K  L  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0190L02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="144606" PGL_stop="145707"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="144606" e_stop="145707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="144606" e_stop="145707" e_length="1102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144606" stop="145185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144606" stop="145122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144671" stop="145550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144672" stop="145191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144682" stop="145498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144745" stop="145707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E741111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144745" stop="145299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144745" stop="145276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144745" stop="145231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144745" stop="145062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144981" stop="145448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266651" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGACTTTACAGTCTTTCTTCTTCTTCTCCAAATCTTCATATGTTTTCAACTTTGCTACATTGAAGTTTGCCCTGTGAGTTTCCTATTTTGCTGTAGAAGTTTGCGCTGTCAAATACTAGTAGATTCCATTATCTATTGATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCATTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGAGGAAGCAACTAACAACTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAAGCATAAACGTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGCTCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTTCACTACCTTCATACTAACGGAGTTATACATCGTGATGTCAAGTGTACAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCTAAGACAATGCCCGAGCTTGATCTAACCCATCTTAGCACAGTAGTGAGAGGAAATATAGGCTACATTGCCCCTGAATATGCTTTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGCCTGCCCTATATCTTTCAGAGATGATGAGTTCTGATGATGAGACGCAGAAGATGGGACAGTTGGAACAAATTGTAGATCCCGCTATTGCGGCCAAAATAAGACCAGAGTCCCTCAGGATGTTTGGAGAAACAGCGATGAAATGCTTAGCTCCGTCTAGTAAAAATAGGCCATCAATGGGTGATGTGCTGTGGAAACTGGAGTATGCACTTTGTCTCCAAGAGCCTACCATTCAAGATGATCCTGAATGA</gDNA_template>
            <first_frame> K  T  L  Q  S  F  F  F  F  S  K  S  S  Y  V  F  N  F  A  T  L  K  F  A  L  *  V  S  Y  F  A  V  E  V  C  A  V  K  Y  *  *  I  P  L  S  I  D  G  K  Q  V  F  Q  G  N  K  F  H  K  *  C  F  *  L  E  L  W  H  S  F  *  K  L  S  S  S  F  C  R  F  G  G  S  N  *  Q  L  *  *  Q  V  F  H  W  R  G  W  I  W  E  G  L  Q  G  C  F  A  *  W  N  K  G  R  P  E  K  A  *  T  *  V  L  T  R  Y  *  R  V  R  N  R  N  *  D  S  L  I  L  Q  P  S  A  S  G  F  I  D  R  I  L  *  *  K  K  *  D  D  S  N  L  *  L  H  G  E  W  E  P  Q  E  P  F  V  W  L  R  S  T  H  Y  E  H  E  L  G  A  E  A  G  D  M  H  R  G  S  Q  R  S  S  L  P  S  Y  *  R  S  Y  T  S  *  C  Q  V  Y  K  H  I  A  *  *  E  F  C  A  K  N  Y  *  F  W  N  I  *  D  N  A  R  A  *  S  N  P  S  *  H  S  S  E  R  K  Y  R  L  H  C  P  *  I  C  F  V  G  T  A  D  R  K  I  *  C  L  F  F  R  C  C  F  I  R  S  S  L  C  *  A  C  P  I  S  F  R  D  D  E  F  *  *  *  D  A  E  D  G  T  V  G  T  N  C  R  S  R  Y  C  G  Q  N  K  T  R  V  P  Q  D  V  W  R  N  S  D  E  M  L  S  S  V  *  *  K  *  A  I  N  G  *  C  A  V  E  T  G  V  C  T  L  S  P  R  A  Y  H  S  R  *  S  *  M  </first_frame>
            <second_frame>  R  L  Y  S  L  S  S  S  S  P  N  L  H  M  F  S  T  L  L  H  *  S  L  P  C  E  F  P  I  L  L  *  K  F  A  L  S  N  T  S  R  F  H  Y  L  L  M  G  S  K  Y  S  K  A  T  N  S  I  N  D  A  S  N  L  S  Y  G  I  P  F  E  N  Y  R  V  P  F  V  D  L  E  E  A  T  N  N  F  D  D  K  F  F  I  G  E  G  G  F  G  K  V  Y  R  G  V  L  R  D  G  T  K  V  A  L  K  K  H  K  R  E  S  S  Q  G  I  E  E  F  E  T  E  I  E  I  L  S  F  C  S  H  P  H  L  V  S  L  I  G  F  C  D  E  R  N  E  M  I  L  I  Y  D  Y  M  E  N  G  N  L  K  S  H  L  Y  G  S  D  L  P  T  M  S  M  S  W  E  Q  R  L  E  I  C  I  G  A  A  R  G  L  H  Y  L  H  T  N  G  V  I  H  R  D  V  K  C  T  N  I  L  L  D  E  N  F  V  P  K  I  T  D  F  G  I  S  K  T  M  P  E  L  D  L  T  H  L  S  T  V  V  R  G  N  I  G  Y  I  A  P  E  Y  A  L  W  G  Q  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  F  E  V  L  C  A  R  P  A  L  Y  L  S  E  M  M  S  S  D  D  E  T  Q  K  M  G  Q  L  E  Q  I  V  D  P  A  I  A  A  K  I  R  P  E  S  L  R  M  F  G  E  T  A  M  K  C  L  A  P  S  S  K  N  R  P  S  M  G  D  V  L  W  K  L  E  Y  A  L  C  L  Q  E  P  T  I  Q  D  D  P  E  * </second_frame>
            <third_frame>   D  F  T  V  F  L  L  L  L  Q  I  F  I  C  F  Q  L  C  Y  I  E  V  C  P  V  S  F  L  F  C  C  R  S  L  R  C  Q  I  L  V  D  S  I  I  Y  *  W  E  A  S  I  P  R  Q  Q  I  P  *  M  M  L  L  T  *  V  M  A  F  L  L  K  I  I  E  F  L  L  *  I  W  R  K  Q  L  T  T  L  M  T  S  F  S  L  E  R  V  D  L  G  R  F  T  G  V  F  C  V  M  E  Q  R  S  P  *  K  S  I  N  V  S  P  H  K  V  L  K  S  S  K  Q  K  L  R  F  S  H  F  A  A  I  R  I  W  F  H  *  *  D  S  V  M  K  E  M  R  *  F  *  F  M  T  T  W  R  M  G  T  S  R  A  I  C  M  A  Q  I  Y  P  L  *  A  *  A  G  S  R  G  W  R  Y  A  *  G  Q  P  E  V  F  T  T  F  I  L  T  E  L  Y  I  V  M  S  S  V  Q  T  Y  C  L  M  R  I  L  C  Q  K  L  L  I  L  E  Y  L  R  Q  C  P  S  L  I  *  P  I  L  A  Q  *  *  E  E  I  *  A  T  L  P  L  N  M  L  C  G  D  S  *  Q  K  N  L  M  F  I  L  S  V  L  F  Y  S  K  F  F  V  L  G  L  P  Y  I  F  Q  R  *  *  V  L  M  M  R  R  R  R  W  D  S  W  N  K  L  *  I  P  L  L  R  P  K  *  D  Q  S  P  S  G  C  L  E  K  Q  R  *  N  A  *  L  R  L  V  K  I  G  H  Q  W  V  M  C  C  G  N  W  S  M  H  F  V  S  K  S  L  P  F  K  M  I  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="144703" stop="145707"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFALSNTSRFHYLLMGSKYSKATNSINDASNLSYGIPFENYRVPFVDLEEATNNFDDKFFIGEGGFGKVYRGVLRDGTKVALKKHKRESSQGIEEFETEIEILSFCSHPHLVSLIGFCDERNEMILIYDYMENGNLKSHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTNGVIHRDVKCTNILLDENFVPKITDFGISKTMPELDLTHLSTVVRGNIGYIAPEYALWGQLTEKSDVYSFGVVLFEVLCARPALYLSEMMSSDDETQKMGQLEQIVDPAIAAKIRPESLRMFGETAMKCLAPSSKNRPSMGDVLWKLEYALCLQEPTIQDDPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="147979" PGL_stop="146237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="147979" e_stop="147667"/>
            <exon e_start="147191" e_stop="147096"/>
            <exon e_start="146646" e_stop="146633"/>
            <exon e_start="146574" e_stop="146237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.616" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.969"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.857"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="147979" e_stop="147667" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.616">
            <gDNA_intron_boundary i_start="147666" i_stop="147192" i_length="475"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="147191" e_stop="147096" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="147095" i_stop="146647" i_length="449"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="146646" e_stop="146633" e_length="14"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="146632" i_stop="146575" i_length="58"/>
          </intron>
          <exon e_serial="4" e_score="0.935">
            <gDNA_exon_boundary e_start="146574" e_stop="146237" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147979" stop="147667"/>
              <exon start="147191" stop="147096"/>
              <exon start="146646" stop="146633"/>
              <exon start="146574" stop="146237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703592" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAGTTCCTAGAACTCAAATACTTAAAACTGGACAACCTCAAAGTTGTACAATGGTCCATCTCTGATGATGCTTTTCCTAAGCTTGAACATTTGGTTTTAACGAAATGTAAGCATCTTGAGAAAATCCCTTCTCGTTTTGAAGATGCTGTTTGTCTAAATAGAGTTGAGGTGAACTGGTGCAACTGGAATGTTGCCAATTCAGCCCAAGATATTCAAACTATGCAACATGAAGTTATAGCAAATGATTCATTCACAGTTACTATACAGCCTCCAGATTGGTCTAAAGAACAGCCCCTTGACTCTTAGCAAAG : AGGTAGCAGAAGCTAAAGTTCAAGGCATTTTGTTTATTTCTAGAACAAGTGGAGTTCTTATGTTGAATTCTTGAAAAGAAGAAGAATCAGGAGCAG : ATGTATATATGAAG : AGTATATATGACTTGGCCTAAAAGTTTTTGCTTCACTAATTTAACTATTGCCGTGGATGAAACAAGCATGGCAACATTTTCAACTATCACTCAAGCAATGTAAAAAATGGAGGTTCTACGAGCGGTACATGTAAGAGTTTTGTGCACACAAGAGGTTCTGAGACTTGAACCATCCATGTCCAAGGCAGTTGAGATGCTAGTAAAGAAAGAAGAAGATGAGCCTGCACAAATTAATCCTCCCTGTATGAATGAGAGAATGAGAAAAAGATGGAGCTTCATGAACCAAAAGTTACCTTTTTTTTTTCTTCTTAATGGCATTACTTTGAAGCACATGTTTG</gDNA_template>
            <first_frame> Q  S  S  *  N  S  N  T  *  N  W  T  T  S  K  L  Y  N  G  P  S  L  M  M  L  F  L  S  L  N  I  W  F  *  R  N  V  S  I  L  R  K  S  L  L  V  L  K  M  L  F  V  *  I  E  L  R  *  T  G  A  T  G  M  L  P  I  Q  P  K  I  F  K  L  C  N  M  K  L  *  Q  M  I  H  S  Q  L  L  Y  S  L  Q  I  G  L  K  N  S  P  L  T  L  S  K   : E  V  A  E  A  K  V  Q  G  I  L  F  I  S  R  T  S  G  V  L  M  L  N  S  *  K  E  E  E  S  G  A   : D  V  Y  M  K  :  S  I  Y  D  L  A  *  K  F  L  L  H  *  F  N  Y  C  R  G  *  N  K  H  G  N  I  F  N  Y  H  S  S  N  V  K  N  G  G  S  T  S  G  T  C  K  S  F  V  H  T  R  G  S  E  T  *  T  I  H  V  Q  G  S  *  D  A  S  K  E  R  R  R  *  A  C  T  N  *  S  S  L  Y  E  *  E  N  E  K  K  M  E  L  H  E  P  K  V  T  F  F  F  S  S  *  W  H  Y  F  E  A  H  V   </first_frame>
            <second_frame>  R  V  P  R  T  Q  I  L  K  T  G  Q  P  Q  S  C  T  M  V  H  L  *  *  C  F  S  *  A  *  T  F  G  F  N  E  M  *  A  S  *  E  N  P  F  S  F  *  R  C  C  L  S  K  *  S  *  G  E  L  V  Q  L  E  C  C  Q  F  S  P  R  Y  S  N  Y  A  T  *  S  Y  S  K  *  F  I  H  S  Y  Y  T  A  S  R  L  V  *  R  T  A  P  *  L  L  A  K  :  R  *  Q  K  L  K  F  K  A  F  C  L  F  L  E  Q  V  E  F  L  C  *  I  L  E  K  K  K  N  Q  E  Q  :  M  Y  I  *  R :   V  Y  M  T  W  P  K  S  F  C  F  T  N  L  T  I  A  V  D  E  T  S  M  A  T  F  S  T  I  T  Q  A  M  *  K  M  E  V  L  R  A  V  H  V  R  V  L  C  T  Q  E  V  L  R  L  E  P  S  M  S  K  A  V  E  M  L  V  K  K  E  E  D  E  P  A  Q  I  N  P  P  C  M  N  E  R  M  R  K  R  W  S  F  M  N  Q  K  L  P  F  F  F  L  L  N  G  I  T  L  K  H  M  F  </second_frame>
            <third_frame>   E  F  L  E  L  K  Y  L  K  L  D  N  L  K  V  V  Q  W  S  I  S  D  D  A  F  P  K  L  E  H  L  V  L  T  K  C  K  H  L  E  K  I  P  S  R  F  E  D  A  V  C  L  N  R  V  E  V  N  W  C  N  W  N  V  A  N  S  A  Q  D  I  Q  T  M  Q  H  E  V  I  A  N  D  S  F  T  V  T  I  Q  P  P  D  W  S  K  E  Q  P  L  D  S  *  Q  R :   G  S  R  S  *  S  S  R  H  F  V  Y  F  *  N  K  W  S  S  Y  V  E  F  L  K  R  R  R  I  R  S  R :   C  I  Y  E   : E  Y  I  *  L  G  L  K  V  F  A  S  L  I  *  L  L  P  W  M  K  Q  A  W  Q  H  F  Q  L  S  L  K  Q  C  K  K  W  R  F  Y  E  R  Y  M  *  E  F  C  A  H  K  R  F  *  D  L  N  H  P  C  P  R  Q  L  R  C  *  *  R  K  K  K  M  S  L  H  K  L  I  L  P  V  *  M  R  E  *  E  K  D  G  A  S  *  T  K  S  Y  L  F  F  F  F  L  M  A  L  L  *  S  T  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="147977" stop="147672"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFLELKYLKLDNLKVVQWSISDDAFPKLEHLVLTKCKHLEKIPSRFEDAVCLNRVEVNWCNWNVANSAQDIQTMQHEVIANDSFTVTIQPPDWSKEQPLDS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146471" stop="146238"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEVLRAVHVRVLCTQEVLRLEPSMSKAVEMLVKKEEDEPAQINPPCMNERMRKRWSFMNQKLPFFFLLNGITLKHMF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="149134" PGL_stop="148230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="149134" e_stop="148950"/>
            <exon e_start="148836" e_stop="148230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="149134" e_stop="148950" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="148949" i_stop="148837" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="148836" e_stop="148230" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149134" stop="148950"/>
              <exon start="148836" stop="148318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149134" stop="148950"/>
              <exon start="148836" stop="148322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148797" stop="148230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347693" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAACGAAAATGGACAAGAAGATACCGCACAAGGTTTCTTGGACGATCTTATTGGTAGGAATCTGGTGATGGCCATGGAGAAGAGACCTAATGCCAAGGTGAAAACGTGCCGCATTCATGATTTGTTGCATAAATTCTGCATGGAAAAGGCCAAACAAGAGGATTTCCTTCTCCAGATCAATAG : TGGAGAAGGTGTATTTCCTGAACGATTGGAAGAATACCGATTGTTCGTTCATTCTTACCAAGATGAAATTGATCTGTGGCGCCCATCTCGCTCTAATGTCCGCTCTTTACTATTCAATGCAATTGATCCAGATAACTTGTTATGGCCGCGTGATATCTCCTTCATTTTTGAGAGCTTCAAGCTTGTTAAAGTGTTGGATTTGGAATCATTCAACATTGGTGGTACTTTTCCCACTGAAATACAATATCTAATTCAGATGAAGTACTTTGCGGCCCAAACTGATGCAAATTCAATTCCTTCATCTATAGCTAAGCTTGAAAATCTTGAGACTTTTGTCGTAAGAGGATTGGGAGGAGAGATGATATTACCTTGTTCACTTCTGAAGATGGTGAAATTGAGGCATATACATGTAAATGATCGGGTTTCTTTTGGTTTGCATGAGAACATGGATGTTTTAACTGGTAACTCACAATTATCTAATTTGGAAACCTTTTCTACTCCGCGTCTCTTTTATGGTAAAGACGCAGAGAAGATTTTGAGGAAGATGCCAAAATTGAGAAAATTGAGTTGCATATTTTCAGGGACATTTGGTTATTCAAGGAAATTG</gDNA_template>
            <first_frame> N  N  E  N  G  Q  E  D  T  A  Q  G  F  L  D  D  L  I  G  R  N  L  V  M  A  M  E  K  R  P  N  A  K  V  K  T  C  R  I  H  D  L  L  H  K  F  C  M  E  K  A  K  Q  E  D  F  L  L  Q  I  N  S :   G  E  G  V  F  P  E  R  L  E  E  Y  R  L  F  V  H  S  Y  Q  D  E  I  D  L  W  R  P  S  R  S  N  V  R  S  L  L  F  N  A  I  D  P  D  N  L  L  W  P  R  D  I  S  F  I  F  E  S  F  K  L  V  K  V  L  D  L  E  S  F  N  I  G  G  T  F  P  T  E  I  Q  Y  L  I  Q  M  K  Y  F  A  A  Q  T  D  A  N  S  I  P  S  S  I  A  K  L  E  N  L  E  T  F  V  V  R  G  L  G  G  E  M  I  L  P  C  S  L  L  K  M  V  K  L  R  H  I  H  V  N  D  R  V  S  F  G  L  H  E  N  M  D  V  L  T  G  N  S  Q  L  S  N  L  E  T  F  S  T  P  R  L  F  Y  G  K  D  A  E  K  I  L  R  K  M  P  K  L  R  K  L  S  C  I  F  S  G  T  F  G  Y  S  R  K  L </first_frame>
            <second_frame>  T  T  K  M  D  K  K  I  P  H  K  V  S  W  T  I  L  L  V  G  I  W  *  W  P  W  R  R  D  L  M  P  R  *  K  R  A  A  F  M  I  C  C  I  N  S  A  W  K  R  P  N  K  R  I  S  F  S  R  S  I   : V  E  K  V  Y  F  L  N  D  W  K  N  T  D  C  S  F  I  L  T  K  M  K  L  I  C  G  A  H  L  A  L  M  S  A  L  Y  Y  S  M  Q  L  I  Q  I  T  C  Y  G  R  V  I  S  P  S  F  L  R  A  S  S  L  L  K  C  W  I  W  N  H  S  T  L  V  V  L  F  P  L  K  Y  N  I  *  F  R  *  S  T  L  R  P  K  L  M  Q  I  Q  F  L  H  L  *  L  S  L  K  I  L  R  L  L  S  *  E  D  W  E  E  R  *  Y  Y  L  V  H  F  *  R  W  *  N  *  G  I  Y  M  *  M  I  G  F  L  L  V  C  M  R  T  W  M  F  *  L  V  T  H  N  Y  L  I  W  K  P  F  L  L  R  V  S  F  M  V  K  T  Q  R  R  F  *  G  R  C  Q  N  *  E  N  *  V  A  Y  F  Q  G  H  L  V  I  Q  G  N   </second_frame>
            <third_frame>   Q  R  K  W  T  R  R  Y  R  T  R  F  L  G  R  S  Y  W  *  E  S  G  D  G  H  G  E  E  T  *  C  Q  G  E  N  V  P  H  S  *  F  V  A  *  I  L  H  G  K  G  Q  T  R  G  F  P  S  P  D  Q  *  :  W  R  R  C  I  S  *  T  I  G  R  I  P  I  V  R  S  F  L  P  R  *  N  *  S  V  A  P  I  S  L  *  C  P  L  F  T  I  Q  C  N  *  S  R  *  L  V  M  A  A  *  Y  L  L  H  F  *  E  L  Q  A  C  *  S  V  G  F  G  I  I  Q  H  W  W  Y  F  S  H  *  N  T  I  S  N  S  D  E  V  L  C  G  P  N  *  C  K  F  N  S  F  I  Y  S  *  A  *  K  S  *  D  F  C  R  K  R  I  G  R  R  D  D  I  T  L  F  T  S  E  D  G  E  I  E  A  Y  T  C  K  *  S  G  F  F  W  F  A  *  E  H  G  C  F  N  W  *  L  T  I  I  *  F  G  N  L  F  Y  S  A  S  L  L  W  *  R  R  R  E  D  F  E  E  D  A  K  I  E  K  I  E  L  H  I  F  R  D  I  W  L  F  K  E  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149134" stop="148950"/>
                    <exon start="148836" stop="148230"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNENGQEDTAQGFLDDLIGRNLVMAMEKRPNAKVKTCRIHDLLHKFCMEKAKQEDFLLQINSGEGVFPERLEEYRLFVHSYQDEIDLWRPSRSNVRSLLFNAIDPDNLLWPRDISFIFESFKLVKVLDLESFNIGGTFPTEIQYLIQMKYFAAQTDANSIPSSIAKLENLETFVVRGLGGEMILPCSLLKMVKLRHIHVNDRVSFGLHENMDVLTGNSQLSNLETFSTPRLFYGKDAEKILRKMPKLRKLSCIFSGTFGYSRKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 270 chains have been computed
$ 
$ memory statistics:
$ 474840 bytes spliced alignments in total
$ 157 spliced alignments have been stored
$ 3024 bytes was the average size of a spliced alignment
$ 33280 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1664 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 326 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-12 19:20:44
-->
