<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-12 19:26:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At2g42490" ref_strand="+" ref_description="C2_At2g42490">
      <seq>ggaactttcgtattggttttacccccagggagggcctggttatctattctgttgcatatattgatggtagcagaggccgtagacctgttgctcatagactgagcttcattgaaatggttgtgccctatggggatccaaatgagccacattacaggaaaaatgcttttgatgcaggggaagatggacttggtaaaaatgcacattccttaaagaagggttgtgattgcttaggctacattaaatatttcgatgcgcattttacaaatttcactggcggtgttgagacaattgaaaattgtgtctgcttacacgaggaggatcacggaatcttatggaagcatcaagattggagaacaggtttagctgaagtacgacgttcccgacgactaaccgtgtctttcatctgtaccgtggcaaactatgaatatggattttactggcatttttatcaggatgggaagatcgaggctgaggtcaagctgactggaattctcagcttaggtgctcttctacaggggaagttcgaaaatatggaacaactattgcacctggcttgtatgcacctgtgcatcagcacttctttgtggctcgcatggatatggctgttgattgcaaatcaggggaatcgcataatcaggtggttgaagtaaacgctagagttgaaccaccaggagaaaataatgttcataataatgcattttatgctgaagagaaattgcttagaactgaactggaggcaatgcgtgattgtaatcctctaactgcacggcattggattatccggaacacaagaacagtcaatcgcactgggcagttaactggttacaagctagtaccaggttcaaactgtctgccactagctggttcagaggcaaaattcttgaggagagctgccttcttaaagcataatctttgggtcaccccttactctcgtgaagagatttttcctggaggagagtttccaaatcaaaatcctcgtgttggtgaaggtttggctacttgggttcagcagaatcgatccctagaagaaacgcaaatagttctttggtatatttttggacttatacatgttccacggctagaagactggcctgtcatgccagtggaacacattggttttatgctccagcctcatgggttcttcaattgctccccagctgttgatgttcctcccagcatgtctgactcggatattaaggaaaacgggacagtggcaaagtcttgccacaatgatggtgtaatgtctaagctttgagagattcaatctagttttgtcttcagggatcgcttcgtttcatgctgtgatgcacaaattgctttgttatctttgtatttggattgaataaacgatttcttgagaacataaacattcgactgcaagttggcatattattgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="24601" stop="31402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24901" g_stop="25115" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25116" i_stop="25216" i_length="101">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25217" g_stop="25453" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="452" r_length="237" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25454" i_stop="25784" i_length="331">
            <donor d_prob="0.473" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25785" g_stop="25970" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="637" r_length="185" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25971" i_stop="26729" i_length="759">
            <donor d_prob="0.767" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26730" g_stop="26870" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="778" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26871" i_stop="27399" i_length="529">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27400" g_stop="27668" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="1047" r_length="269" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27669" i_stop="30067" i_length="2399">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30068" g_stop="30149" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1048" r_stop="1129" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30150" i_stop="30847" i_length="698">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30848" g_stop="31004" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1130" r_stop="1286" r_length="157" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1398" polyA_stop="1414"/>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="C2_At2g42490" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>1287</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At2g42490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24901" e_stop="25115"/>
          <exon e_start="25217" e_stop="25453"/>
          <exon e_start="25785" e_stop="25970"/>
          <exon e_start="26730" e_stop="26870"/>
          <exon e_start="27400" e_stop="27668"/>
          <exon e_start="30068" e_stop="30149"/>
          <exon e_start="30848" e_stop="31004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTTCGTATTGGTTTTACCCCCAGGGAGGGCCTGGTTATCTATTCTGTTGCGTATATTGATGGTAGCAGAGGCCGTAGACCTGTTGCTCATAGACTGAGCTTCATTGAAATGGTTGTGCCCTATGGGGATCCAAATGAGCCACATTACAGAAAAAATGCTTTTGATGCAGGGGAAGATGGGCTTGGTAAAAATGCACATTCCTTAAAGAAGGTCAGGAAATATTTTATTGGCATTGTGAAATGCATCTTCCATGTATAATATTTAGTGAACTTAACTTTGCGATCTCATATGAGTGCTCACTTTTATTGCAGGGTTGTGATTGCTTAGGTTACATTAAATATTTCGATGCGCATTTTACAAATTTCACTGGCGGTGTTGAGACAATTGAAAATTGTGTCTGTTTACACGAGGAGGATCATGGAATCTTATGGAAGCATCAAGATTGGAGAACTGGTTTAGCTGAAGTACGACGCTCCAGACGGCTAACTGTGTCTTTCATCTGTACCGTGGCAAACTATGAATATGGATTTTACTGGCATTTTTATCAGGTGGTTTACCCTTCTATAAATAAGAGCTAAATTGTTGGTTTCATTGGTTGCATAATCTCTTCCCGACGTCATGTGATTTACTTGTTTTAGCTAAATTCAGCTGGTGGTGCTTCAATTTGTAGCATTGTTTGCTTTTAATTTGAGCATGCATTTCCATGTTTCTAGACTGTACATTCATCACTTCAGTAAAGCAGGAGTTCCACTTTAATCAAATTAGTAGTCTGTAGTTCCTTTATGAAGGAGATGAAAAGGAGAAAATGTGGAGATATTTTGTCCATATGGATTTTGAGATTTGGATATTCAAACATCAATTTCTTATTTCTCACCACAGGATGGGAAGATCGAGGCTGAGGTCAAGCTGACTGGAATTCTCAGCTTAGGTGCTCTTCTACCAGGGGAAGTTCGAAAATATGGAACAACTATTGCACCTGGCTTGTATGCACCTGTACATCAGCACTTCTTTGTGGCTCGCATGGATATGGCTGTTGATTGCAAATCAGGGGAATCACATAATCAGGTATGCCCTCACATTAGTCCTCCCAAAATCCCTTGTGAATCCTGCGCCGGACTTTTCTGATATTCCTTTTATTTTTATCTTTTTTACCAAAGAGGAGGTTTTTGGAACCTTGTGGGCATTACAACCTAAATATTTTCTTTTAATTGTCTGCAACTTCCTTTTCTCCTTCCAGATCCTTCTGATTATTTCTCCCACATGTCTTTTGTTCAATTCCTTAAACATACTGTGATGGTGTATCACGGGGGTTGGATCCTCTAATGTCATTTCTAGGAACCGTGTATCATTTCTCCAGTATGCAACACATTTAGCTTCAACCATAGGTTTCTTTTTTAATTCATCTCTATCTTGCTAGTAACCTTTTTGCTTGAATGCTATATGTTTCTTGTTGTTAGAGACCTGATAAAATTGGAAAAGTTCATGAAACATCCAAATTATGTTTGGACTGGAAGTCTGAAATGCTGTTTTGACTGGTATTTCTACATCAGAGATCGACCGACCACTTGAACCAGTTCATGTATTGATGACTCGGGGCAATGAAAAGGAAATCAATTATTAAGACTAAATTTAGCTATTTGTTCATGAGTAGTACATTCAGGATTTATGTATGGGTTTCTGATATAATTTGCCGAAGTATAACACACTAATTTTCATTGCTGGGGACAAAATAATATCCTCCTTGTTTATCCTACTTTCGGTATATGAACTTTTCTCCATATGTTTCTTTCATGTGAAATCTGATCCTAAGGTTTATTGTATTAGGTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCATTTTATGCTGAAGAAAGATTGCTTAGAACTGAACTGGAAGCAATGCGTGATTGTAATCCTTTAACTGCACGCCATTGGATTGTAAGTTTCCTCATCTCTTATTGGAGCTTTTCTATCAAAGGATATAGTAAAGTTTATATATGGGTTATGTAGCTTCTATGCTCTGCCTAAACAGTAAATAATATAATGGTATATGAACTTTTTGTTTGATGATGTACTGTATTCCTCTATCCTTCTATCAAAACTGAAGGCAGAAGCTGTATCGTGGCTATTCTCTTAGCTCAAATGCTGCAGTCTTAAATAATGGCAATAGTAGTACATTTTGCAAACTTGCCGCAGTTGATGTTTATTTAATTTGTCAATTATGGTAGTTGTGAATCCAGCACATGTTTTTTTTTGTGTTATTCGGCTGTTCCATCATGTGTATCTGAAGTTGTCTATTTTAAGTTATTGTCACTGTCTTAAACGATCCCAGCTTGTTTGGGACTGCTAAAGCTGTTGTTATCGTCAGTCTTGTGTATTTGTTTACCCCTCTGTTGTGTTATGGTGATTAGTTTGGCTTTTACTTGGACATGATGGTTAGATGGTATTTTCTTTCTTCAATATACAGATCCGGAACACAAGAACAGTCAATCGCACTGGGCAGTTAACTGGTTATAAGCTAGTACCAGGTTCAAATTGTCTGCCACTAGCTGGTTCAGAGGCAAAATTCTTGAGGAGAGCTGCCTTCTTAAAGCATAATCTTTGGGTCACCCCTTACTCTCGTGAAGAGATGTTTCCTGGAGGAGAGTTTCCAAATCAAAATCCCCGTGTTGGTGAAGGTTTGGCTACTTGGGTTCAGCAGAATCGATCCCTAGAAGAAACGCAAATAGTTCTTTGGTTAGTCCATTCTCAATACAGATTAGATTTCTTATGGCGACAAAAAAGTATACTAATTACTCATTTTTCTTGTGTCTTGGCCATTCTCATCTGTTATTTCAAGGTTTATCATCTAAAGTAGTGGTGGCGAATATGCGGGTTGGGTCATATTTGGGCGGGTTGAAAATGGGTAATAACTGAACCTGCCCATGTGTGGGTAAAATGGATTGGGTAACAAATGGGATGGGTAAAATACAAGTTTACCCTTACTTTCATGAGTAAATAGTACTCTACTTATGTGGAGAAAATTTTATGGTCTTTTTTTGGATGAAAAATGTTAAAATACTTTGGTTAGTTTTATTATATCATAAAAGTAAAAATAAAAGTATTTTTTTTTTGGTAAGTAAAATTTTATTTACCAAGTAAACGTTACAAAACAAGAAAATTAGCCGGTATGGACATAAGCTCCATCCTTGCTAAACCAACTTCCATACCTACTAGCTATTCCTATGGGTAGTTATTCAAATTGCATAATCTAGTAGCTATTCTAGGATACCTTATACCTCTCCCATGGATATCTTGAATTATCCTTCTGATCAAGCATCCTGCTGCCTGATGTTTTTGTTGAAATATACTAGCATTACGCTCTAACCAAATATGATAAATGGTGCTTGCCATTGCCATTCTATACACAAGTGTCCTACTGCTTCCTCCTTTCATGTATTTCACTGCCCATTATATCTCATTAATCCAATTCATTACACTTCTTGTTATGCCTTGCCACTGCAGTATACCCCTCCACACCTCTTCTGCATGTACATTGGAAGAAAATATGATCATGATCTTCATCCATTTGTTGACATAAGGGACGAGTTAATACTTGTAGAATTCCCCATTTTGCCAATCTATCCTTTGTTGCAAGTCTACCATTTACTGCCAGATTCATGATGAATAGCCAAAACATCAGCAAATCATCAGCAGAACTTAAGTGCACTATTTTTTGTTCTTTGCTCCTAGGATGGTAGTGAAACTCAGGCTTTCCCTGCAGAGTCTTTAAAATTCTGGTCAGATAATCCATGGCTAGCACAAACAAATAAGGAGACGTTGGATCTCCTTCCTTACTCCTCTCTTTGCCTTAAAAGGTTTTGTGTTATGTCTATTTACCTGGATGGAATAGGTGACTGGTGACACATTGCATGTTCCATTTTATGACTTTAGATGGCATTTGAACTTCTTCCAATATTTGCTCCAAGAATGTCCATTCCAAGGAATCATATGCTTTCCTCATATCCACTTTTATCATACATCTCCTAGAAATTCCTTGTCTACCATATCCTTTGATCAATTCATGACTCAATATAACATCATCATTCAAAGCCCTCCCTGGCACAAAAGCTGACTGATTTGGTTCCACTAATGTTTCCATAACAGGTTTTAGTTTGGCAGTGACTACTTTAGCTATGATTTCATATAATGTTGAGCAACATGATATAGGTCTGTACTCATTGATTTTGGTTGGATTCTGCACCTTAGGAAATGAGGGTCACATTTGTAGAATTGATTGCCTTGTACATTTCCCCTGTATCAAAGAAATTTAGTACAGCATTAACTGTCTCCTCTCCCACCACAGGCCAAGCCTTCTTGAAAAATACAGCATTAAGTCCATCCCTACCTGGGGCTTTGAGATTATTTATTCCCTGCAAAGCAAATTCCACTTTCTTTCTTGTGACTGGAGCTGTTAATTTCAATTGTTGTCCCCTATTAATCTTACTTTTTAATATTGAAAAAAATTCATGTAATAACAAGGGGGAAATATTTTTGATTTCAAAGTAAAAGAATATTTGTATTTTAGGATTAAAACGTATTTAATGCATTTTAATCAGTGTCTTACTTAACACTATTGTTTGTTATCCAATATAAAATTTTAAAAATTAATTATTATTAACAATGAAATGTACATTTAATATATATAATTTTTTGGAGGGTCAAAGATTGCACCTTTTCAATTATAGAGAGGAATAATTTGTTGGAAGCTTGACCTATTTGGTCTTTACCCACGAATACCTATATTTTGATGGGTTGAATATGTGTTTAAACCCGATTTTATCCAAGTAAAAAATCACTCAACTCATTAGAATATGAGATGATTTGAGGAGTTATTGAAATATGAGCTCAATTTGCCGGCACTAATAGAAAGAACTTCACAAAGAGGAGATACACAAAAGTGCAACCATTGGAGTGAAAATATGTTATTGACATTCACTAAAGGGGTTGGGAAGAGGGGAAGGGAGGGTTCAGTGGAATGATGAAAAAATGGATAAAAGAGCAATTAGTACAGCTAAAAATTGAAACGAAACATTATGGCTATCAAGCTTGTTACATATTTCTGGTTATGCTGACCAAGTTTTCTAAATTTTCAGGTATATTTTTGGACTTATACATGTTCCACGGCTAGAAGACTGGCCTGTCATGCCAGTGGAACACATTGGTTTTATGCTCCAGGTATAGTAAATGGGCTTTGACTTTTTTCTTTCTTGATCGGCAGTGTCATTCCACATATACAGTAGAAATCCTTTTCACTGGTAAAACATGTGCCCAGTTAAGCATATCCATCAACAGGTGTTTAGCATTATCTAATTCTCACCCATTTACTTTTCACAATGGATTGGGGCTGGGAGAGCTAAAGGCTTTGTTCTAGTGGGAGTGACATGATCACAACATGTGATGTGTGGGTTAGTGGGACATCATGGATTTTTGAACCTTGCTGAAGCTGTAGTCTTGTATTTAAGTGGTAAGTCAGTAGAGGAGGATCCTCTATATGCTGGATTTCTAGCTTGTTCCCCACAAGTCCTCGGATATTAATGACTTCTTAACAAAATAGAACTGGGGTTGAGAATAGGTTGGGCTGTGTTTCTTGTGACACTACTAGCACTCGACGCGGCATTTGTTCCATATCTTTACAGCTTGTGTTTATGTTGGTGAAATATTTCTGGACTTGTGTACCTGCATTTGAGTTGATAGGTTGGCTCCCACCTTCAAGTTTTTTGTTTTTTTTTGTCTTCTCTCGAAGCAAAAGAATTTCTTTTCCGAGGATATGGTGATATCCATCATTGTGAAACAACCTACAACGGTTTTTGTAAATTCTATGCTCCACATGACTATGTTAATTCTGTTGTTGATAAATGTTGTTTATGATGCAGCCTCATGGGTTCTTCAATTGCTCCCCAGCTGTTGATGTTCCTCCCAGCATGTCTGACTCAGATATTAAGGAAAACGGGACAGTGGCAAAGTCTTGCCACAACGATGGTGTAATGTCTAAGCTTTGATAGATTCAATCTAGTTTTGTCTTCAGGGATC</genome_strand>
        <mrna_strand>GGAACTTTCGTATTGGTTTTACCCCCAGGGAGGGCCTGGTTATCTATTCTGTTGCATATATTGATGGTAGCAGAGGCCGTAGACCTGTTGCTCATAGACTGAGCTTCATTGAAATGGTTGTGCCCTATGGGGATCCAAATGAGCCACATTACAGGAAAAATGCTTTTGATGCAGGGGAAGATGGACTTGGTAAAAATGCACATTCCTTAAAGAAG.....................................................................................................GGTTGTGATTGCTTAGGCTACATTAAATATTTCGATGCGCATTTTACAAATTTCACTGGCGGTGTTGAGACAATTGAAAATTGTGTCTGCTTACACGAGGAGGATCACGGAATCTTATGGAAGCATCAAGATTGGAGAACAGGTTTAGCTGAAGTACGACGTTCCCGACGACTAACCGTGTCTTTCATCTGTACCGTGGCAAACTATGAATATGGATTTTACTGGCATTTTTATCAG...........................................................................................................................................................................................................................................................................................................................................GATGGGAAGATCGAGGCTGAGGTCAAGCTGACTGGAATTCTCAGCTTAGGTGCTCTTCTA-CAGGGGAAGTTCGAAAATATGGAACAACTATTGCACCTGGCTTGTATGCACCTGTGCATCAGCACTTCTTTGTGGCTCGCATGGATATGGCTGTTGATTGCAAATCAGGGGAATCGCATAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCATTTTATGCTGAAGAGAAATTGCTTAGAACTGAACTGGAGGCAATGCGTGATTGTAATCCTCTAACTGCACGGCATTGGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGAACACAAGAACAGTCAATCGCACTGGGCAGTTAACTGGTTACAAGCTAGTACCAGGTTCAAACTGTCTGCCACTAGCTGGTTCAGAGGCAAAATTCTTGAGGAGAGCTGCCTTCTTAAAGCATAATCTTTGGGTCACCCCTTACTCTCGTGAAGAGATTTTTCCTGGAGGAGAGTTTCCAAATCAAAATCCTCGTGTTGGTGAAGGTTTGGCTACTTGGGTTCAGCAGAATCGATCCCTAGAAGAAACGCAAATAGTTCTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTTTGGACTTATACATGTTCCACGGCTAGAAGACTGGCCTGTCATGCCAGTGGAACACATTGGTTTTATGCTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCATGGGTTCTTCAATTGCTCCCCAGCTGTTGATGTTCCTCCCAGCATGTCTGACTCGGATATTAAGGAAAACGGGACAGTGGCAAAGTCTTGCCACAATGATGGTGTAATGTCTAAGCTTTGAGAGATTCAATCTAGTTTTGTCTTCAGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1468" ref_strand="+" ref_description="T1468">
      <seq>tggtttcatcttggaatttatgtcttcacacttggccacatatacaaataataatatactataattatccccttttcctttacaccccaataaaaaataaattgcacttctcactcaccattcaccaaactgactcacaacacttgcctcctaactgtgttttgagccaaggtgctacattgccagtacgggcatcactttgcttggaatttgaactaagaggaaaattttgattccttataatgtcttcaaaggcattagactatgagaatctgaacgaaaatgtcaagaagtgccaatatgctgtcagaggtgagctgtaccttcgagcttctgagcttcagaaggaaggcaaaaagatcatcttcaccaatgttggtaacccccatgcccttgggcagaaaccactgacatttccacgccaggtcattgctctctgtcaagctccatttttactggatgatccgaatgtgggactcatattccctgctgatgcaattgcaagagctaaacagtttcttgggatgacttctggaggtctaggtgcttatagtgactcccgaggcattcctggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83660" stop="79509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83360" g_stop="83203" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81427" g_stop="81227" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="359" r_length="201" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80685" g_stop="80620" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="425" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80532" g_stop="80415" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="543" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79842" g_stop="79809" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="577" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="T1468" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="T1468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83360" e_stop="83203"/>
          <exon e_start="81427" e_stop="81227"/>
          <exon e_start="80685" e_stop="80620"/>
          <exon e_start="80532" e_stop="80415"/>
          <exon e_start="79842" e_stop="79809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTCATCTTGGAATTTATGTCTTCACACTTGGCCACATATACAAATAATAATATACTATAATTATCCCCTTTTCCTTTACACCCCAATAAAAAATAAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGTGTAAGTCATGCCCATTCCTTTTTTCTTTTTTTTTTTTGATTCTGCATATTCTTTGTGTGTTTTAATTGGATCGATATAATATATAGATTTTCTCTTTCATCTGCTATGTGTGTGTAATGGAGGCGTTTTTTGTCGTCTTTTGATTTTGTGTAGTGGTGAATATATGCCCACAATATGCTTTCGGTCCAATTTTTATTGATTACTAGGTCACATTCTCGAGCGTGGATTTGTTAAATTTGATTTATAATTTGTTAATGTAGAATTTGATTTGGGGTGTGTGTGGTCATTTGCACTGTTGATTTTATGATTAGCAGTTTTCTTTTTTGATTTCTGTTGTAGTTGAAATCATGAATGACCCTACTGAAAGATTTGACCAAATCACATTATATGTAATTGGGTTGGCACTTTTCCTGTGTATAATATGTTTGATTGTATTTGAGTTTTTTTTTTTTTAAATCAGAGTGTTGTTGGTATAATAATCAATGGGCTGAGTGTTTTGGTCAGAATAGTAGCTAGTTGTATTCTTAATCTTGTTGTATTTTCTTGTTTAACCTAAAATCTGGATTAAAGATTAACAATTAAATTTAGTGAGGGGGAGAACCATGAGGTCTTGGGTTCAAATTCCAGACCAATAACAAAAAACACTAGGTGATTTCACATTTGTTCTATCCTTGGAGGATAGAGTTACTTGGTGGTATCTACTGTTGGTGGAGGTGACAGGTATTCCGTAGAATTAGTCAAGATGCGCGAAAGCTGGTTCGAGCGCTACAATCATAGATAAAAAGATGTAACAAATAGAGTAGTGTCAAAGGCAAGTGAATCATCTAACTAATAGTTAACCTCCCGATATTATGAACTTGACTAAAATGATATAAGACATACAATGAGAAGTGTGTAAATGATAAAATAGCAAGAGAGAAAGAGAATTTTTATTGGGAACTCGTGGTTTAGCTAATGAACAATGTATCTGAGTAAGAACACAATAGCTTGTTACAATTTAAGCAATAGTAGTCGTAAAAATCAGATGAGATACAAGTGGGGATAAGGGATATTGTTATAGCACAACACCAGAATAGCTAATTCCTAATATTTCGGTCCTCATTATGATCGTTATACACACATCCTGTATGTAACTCATACTGATTTGTAGAGGCGAACATAGGATTTCTAAACATGGTTGCACCACTTTAAAAAGAAAGAAAAAAATGTACAAAGTGGGAATTAATCCTCCTTTAGGCAAATAACTCAACATGCAATCAAGTGCACCATTTAGCCTTCTTGTAGCATGGGTGCCAACAAATAATACCGTACCAGTTTTAGAAAATACATACATTAATTACCTAGTTTTACGACGTTGACGAGACCACGGGTTCATATGCCCCATATTTAGCTATAAATTCACCACTGTTGACTTGTACCCGCAGTAGAGGATCCTGTATATTCCTGAGTTGGCAAGTCTAGATGCTTATCCTATCCATACATTTGTCAACTGACCCAATGTTTGATTGTGGGATAAGACTATCTTACTGCGGCATGACGAGTTCAGGGTAAGCTTGTTATAGATTCGGAGCAGACTTCCGAGGTTATTTCTAACCTCTTGCTGGAGCGAACTTTGATGACTTGGAGCTGCCTAGAGTTGTGCTGTTTTCGAGTTGTCCACATGTCGTATCCATATTTACCAATACATTTCTCTTTGGTTTTTTGGTGCCACTATGTTTTGTTGCTTTGCAGTCATTGTTCCCTTTACTGATTATAGTTTCTTCATGTAATTGTAGGTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGGTATAAGTTGTCAAATTGTTCTTGTCTTTTCCTATAAAATATTCTCCTGGTGACATTTTATAGATTATCATGTACTGAAATTGACTAGATACTTTTAAAATAGGTATTATGGTCCATTTTCCCTCTGAGTCACTCATAGTTTGATATTCCAACAAGCACGAGGAATTGCTGTCTATCAAAACTTTGTCATCATGAATTTATAGGCCAACTTTAGGCAGCTTGCAAAGATTTGAAGCATTGAACCAGTCATCCGTATCGAGCCTAGATTTTTGCCAAAACCTGTTTGAATCCCATGAAATGCATACAAATTTATAAATTCCTCATCTAAATAATCCTGAGATACTACAAACTCTTATGATGTGATGCTACAGTTAAACAACTTACACAATAATAGTAATTAATCTATTCAAGAATCCTAATGTCTTATGACCAGGAGACTTATTTTTGTAGATCCTAATGTTTTGAGGAATCGTTTGAATGAAGACCATTTAATTCATTCAGAGCGCTGATATACTATCTCATTGTTCCACTTGTTCTGCAGATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAGGTTTGTAACAGTTGCACAATGCCTGTTTTTATATGATGCTTGAGAAATGGTTACTTGATACATGTAAAAATACTGGACTCATTTCAGGTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAGGTATCCTTCCGCAAATAACCTTTAATTGTTACATATGCACGTCCCTGTGCCATGTTTCTCTTCCTTCTGGCTTTCTTTTATGCCCTTGGCTGAGCAAATACACAAACTAGAATTTGTTTTTGCTTTTATGTCAGACGTTATTTCTTTTTCTTTTTTTTTTCTTTTTTTTAATGTTTCAATGATATGTTATATTTTTGCTTCACCATTTACTCTTATTTCCTGCTTATAGTTTCTTCATTATATTATGTTCGTGAAATCACGATCTAGTCAGTCTCTGTAGTTTCTTATATCCTAAAGGACTACTTACTTATTATTCCATCGGAGGGGGTGGGAGGTGATAGTTGGTGCAATTTAACTTGTGAACTGTTGAAATTGAGCTTATGCATTTAATCCTTTCTCAGCGGACAAAGCTAAATTAGACTACAGAAGCTTGACTTTCTATCCATCACTAACTACTGATCTGTGTTCTTGCTATGACACTCAATTGCAAGCAACACATATTACTGTGGCCCAGTTTTGAGACAGTGATTCTTAGAGAGGGAATGATGTATTCTATATTTGCCGGTAATTAGGTGCTTATAGTGACTCCCGAGGCATTCCTGGTGT</genome_strand>
        <mrna_strand>TGGTTTCATCTTGGAATTTATGTCTTCACACTTGGCCACATATACAAATAATAATATACTATAATTATCCCCTTTTCCTTTACACCCCAATAAAAAATAAATTGCACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGCCAAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTGAACTAAGAGGAAAATTTTGATTCCTTATAATGTCTTCAAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG.......................................................................................GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCTAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0128" ref_strand="+" ref_description="T0128">
      <seq>aattcttagtgagttcataaaaactgatgcatataggatggaggttacacaaaggcctccaatggcagttacaaatgctgtgtcctggcgtagtgaagggataaattacaagaagaatgaagtgtttttggatgttgtggagagtgttaatatacttgtaaacagcaatgggcaaatagtgagatcagatgttgttggtgcactgaagatgagggcatacttgagtggcatgcctgagtgtaagcttggtcttaatgatagaatgttgctggaagcacaagggcgaactaccaaggggaaggccattgatcttgatgatatcaagtttcatcagtgtgttcgcttggcccgatttgaaaatgatcgcactatatcatttataccgccagatggagcctttgatcttatgacctacagacttggtactcaggtaaagcctctcatatgggtggaagctcaagtggaaaggcattctaggagccgtatggaaattgtggttaaagcacggagccagttcaaggaacgaagtactgcaactaatgttgaaattgagttacctgtggcaacggatgctacaaatccaaatgtccgaacatcaatgggatcatctacttatgcacctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96566" stop="102973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96866" g_stop="96986" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96987" i_stop="97054" i_length="68">
            <donor d_prob="0.381" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97055" g_stop="97158" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="225" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101705" g_stop="101812" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="333" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102150" g_stop="102246" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="430" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102343" g_stop="102440" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="528" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135">
            <donor d_prob="0.468" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102576" g_stop="102673" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="626" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="T0128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="T0128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96866" e_stop="96986"/>
          <exon e_start="97055" e_stop="97158"/>
          <exon e_start="101705" e_stop="101812"/>
          <exon e_start="102150" e_stop="102246"/>
          <exon e_start="102343" e_stop="102440"/>
          <exon e_start="102576" e_stop="102673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAAGTAGGTATACATGTTTATTTAAGAAGATATTTTTCTTCATTGGGTTACATGGAAGTTTGTTCTTTCAGGTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAGGTTTGCTCTTTGCACTGTAAATTCTTTTTCCTTTTTTTACTGAACCTACCATCTAGCTCATGCCTCAGAAGGAAAATTCATGTTAATGTTTACCTCTATTTGTTTTTTTTCGTTTCCCCCCTATCCCTTTGGTTATCTAAGATTCCAAAAATTCCAACTGCAAGAGTTTAACTTCTTTAGTTAGTGTCAGATAGTATTATCAGAAACATGATTAACAAATTATGCATTGCACATTTATGCATATAGGTGTTGAAGAATTTTGACTGAGTACCTTCTTTTGTGCTTCTAATGTAAAGATCTAAGTTTCAGACACCACTTGTTTATTCTTCACTGGATGTAGCTGTAAAGAGCTCGCCAAATATTCTTTTTTTCCTGAATTTCGTCAATCTTTTATACACGCCTCAAAGAAATTCACCATCACCAATAGAATTGTTTGGTAGACAAGCTAATTTTGATCATCATAATCTGCGAAGTGTTCAAGTGGCAGTTAGAATTACTAAAATCTTTCGGACAAAATTAGGCATTTTAAATGTTTCATTGCATACTCATGTTCTAGGAGTGTATTGGATTCTTATATTACCACGCTGGACTAGTTCTTCTATGCTCTAATCTTACAACTACCTACAATTAGAGTAACCTAGGCGATGATCTGTAGAAGTTCCAAGGATCTCTCTCTCTCTGTCTAGATAGAGAGCCCTCTACTTAGGTGGGGAAGTTCATTGCTTCAATTGTCACAAAATTGTAGATAAAGATTAGGGGTGTCAAATTTAGCTCATAATAGAATAATCCACCAGACTTGGGCAGATCGGGCTGTGTATATGCTCATTGGTCTGTCATTTTGGGATAGCTCAATTTAGTTCCTGTGAATGCTGCAAAGCTGTCACATGAAAGGTCTGGGAAAGGAAAAACTGAAAACCTGGAATTCAGTGATCTCAGTCACATGGTGGATCATCTACATGAAAGGAACCCATGAATTTGTGAAGTAAAAGGAATTTATCATTTGCATGAAGCATAGATGCATTTTTTCTACTTTCTTTTTAAATTTTTTTTGGTGTAACTTGGCAATTGCAAATGAGAAAGTGGTTATGATAGAATTCTTGAGCTTGTTACTGATTTGTAATGCGGCTATGGGTTATGTCTCTGTAAATACTGTGCAGCACTTCAGCAAAATACTTTCTCCAATAATTAAAAGAAAGGCTTGGGCCAATTTGGTTGCATATGTAGCCCAAATTGATTAGTAAGAAAGTCATCAAAACATATTATCTTTTTAATGTGTGGTTTATTTGAAATAGTCATGATAAATGAAGAAAACATTTTTTATTAGTTTGAGTTGATAACTAAACAAATTATAAAAGAACAAACCAACTAATGAAAACCTTTTGAGTTGAGCAGATTGCGTTATGAGTTATTACTCATTGTCCAACCCAAATTGGCCGGCCTATTTGACCCAAGCAAGCATTTGGTGGGTTATACATTCCAACCTATATATGACTAAAGTCTAAACTTACTTTAACCAGGCCAAATGTAGCCAACTTGCCCATTTGACACCCCTGATGAAGGTGATGAAGGTCAAGAGCTGGGTAAAACTCAATGATTAATAAATATTTTGAGAGGCCCACAACAACAATCAATTGGATGTGCTTACTCTCACGCCTCCTATCCACCTAGAGAAATCTGTGGGACACCATGTGTGGAGCCTATAACTGACATGTCCTAAAGAGCGTACATATCCTACACTTTAACCTTTTTATTGGTGGGTTACACTATGTAAGGGCCAATTTTGGCACTCCTATGTTAAATCTTTTAAGTACCAAAGTCAGAATGGAAATTAGTTCCCTTTTCCACTTTGTTTATGTTCCCTTTTAGAAACTAATACAAGGCCTTCAAGCGCTAGTGCATTCTCTATCACCTTCAAAGATGTTCCAACTGCACATTTGTTTAATATTTGAATGCAAGTCTCTTCCCCAAACCTTTTGATTTAATAAAGAGAGAACTGCATATAAGTACAGTCCACACACATACATTGCAACCAGGTGGCCATGTGCCCATTGTTTATGGTTCATCACTCTTGTTAAATATTTGAGTGCAAGTCCCTTCTTCAAACATTTTGATTTAATAAAGAGAGAATTACATACAAGTATAGTCCAGACACATACATTGTGACCAGGTGGCCTGTAAACAACTTTGCAAAGTTGAAGCCCTAAAATAATAGGTCAAGATTCAACATCAAAGTCCTAATAGGTTCTCGAAGTTGCTATTCAGTTTCTTTTTTAAAAAAGCGCAAGCTTCTAACTCAATCTCCGAATCAGTAATTGTGACTCAAACATTAGTTCAACAAATCAAATGCATTTGGGTGGTGATTTAGATTTTTAAAATAATCCACCATTACTGGAAAAAATTAATTAACTGTGTTTAAAATTCAAATATGATTTCGTGAGAAATTTGGATTTTTGAGTTGGTGGTGTTTTAAACTTGTCAGAAATAGTCTAAGGAAGCTGTATACCCATATATACGATTATACAAAAACTGACTTCCTCTTCTTACTAGTGCCTCCTCTTAAATTTAACTCAAGTTTAAGTTTCAAAGACCTCTTGAAGTTTCCAGTTAATTGGAACAAAACCCAACCCAAACAACTAACAAACTCAAAAAACCCAATTTCCAAATATAGCTTTGAAGTGGGTTCAATGATAACTTTTATTTTTCAAGTTCTCAATCAACCACAATAAATCAACCAAATTAAAGCCCTAAAATTGGCATTGATATTTATATACAACCATGGATGAAGGCGAGTGCATGACAGAGAAGCACCTTAGCAATAAAGTAGAAGTGAAAAAGAAAGCCCATCAAAAGCATCTTCCAATCTGTCTTTCCACCCGGCTAAGGCTTGCAGAGTAATATGTGATGCATTCAGGCCATCAATGAGTTCATCTGTTTTACTGCTCCATACTGCTTAAAAGAACATAATGAAAAACTTTTGGACTGAAGTTTGTTTATATATGCAATAACCCCAAGATTCGACATTCATCATTATGAATTTTTTACTTTGGACACTAGATTAAAACTGAAGAGAGTGAAAAGGGACTAGAGGTGACACTTCATTAACATTGAAGATGAAAAGAATGAGCGCTGGGAAAAGAACGAAGCAGAAGGAAGAAAGAGACAAAAGGAGAAAAAAGGGTTATTGCCCCAAGGAATGAAAACAATCAAGTTATATACAAAGTGGGTCAAATTGGGTAAGAAGGTAAAACGTGAGCTAATTTTAGTAGCATTGTTACCCGACCTTACAGAGAGTAACTTTTTCTGTAACAAAGATGATCAACTTGTGGGGGCAATACTTTGAGAAGTACATCCCCAAACATTTACATAATTTCACTCCAGAAGGAGATGACTGTCCAACATGTTTGGAGGTTTCTAGGTGGAGATGGTTTTTTGGATTTGAGGTTTAGGTGAAACTTTCATAGTTGGAATGTGCCAGAGTTCCAAAATCTGACTACTTTGCTTCACAAGCAAAGTACTTCAGAAGATAGGCACGGCGTATGGAATTGGAAGGCTGGGAAAAATGGAGTGTTTTCTATTAACTCATATTATCGGAAGCTTCTAATTAGGGAGGAGGTTGCCGTTCCATATAACTCGAGTTGGATCTCCATTTTATCATTGGTTTTTTTCACTTGGCTATCAATTAGAGGGGAGGGGTGATTTTGACTGCTGAGATGCTTGAGGAGATGAAGGTTCTGTGCATTAATTGGTGCTTTATGTGTAAGGGTTCGGAGGAAGATGTCAACCATTTTCTCATAATTGTCAGGTAGCTTTGAGGTCATGGTGGGAAATTCTAGTTTGGTTTGGAATCAGTTGGCTGATGTCAGACACTGTGAAAGAAGCCATGTCCAGTTGGAGTTTTGATAGAATGAAGAAGAAGAGACACAGGTCTTGGAACGTTCTCCACTAGCTCTTATGTGAGTTGTCTGGAGAGAAATATGAGAGCTTTCGAAATTCAAAGGTGTAGAGATGAATTTTATGCGAATAAGGAGTAACCTCTTATTACTTTTTTCCTTTTAGAGTACTGATGAGGTCTGTTTATGTATAGAATAGAAGATTGTGTGTCGTTCGTTACAAAAACTATTTTCTTGTAGGTTTGCTACTTATTGGTATTCTTCTTGTATACAGGCACATTTTGCCCAAACATCAATAGTATTTATTACTTTATCAACAACAACAACAACATAATAATAACAACAACAGCAACAACAATGTGTCTACTTGTTAGTGTGTGAGTTGTTTTTTTACCTGAACTTTTTCAGTTTTCGGTGAGCTCTTTATTCCACATCTGTTGGAGTGTCACTATCTTATCTTCTATTTGAATATCTGGGACATTTTAGGGATACAAGTTGAATGCCAGGTAGTTTTTCCGTGTTGATTCAGAAGACACTTAGTTCCACTTCTTAAACGTCATGGTTATCAGTCCCTCACGTGTGAATTGTTGGTATTATCCTACTGTATATAGAGTGACTGTTATCTGAATATACATTTTTTTGTTTCTTTTTTGCAGTGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCAGTATGAAATTTGTTCAGTTATTTCTTTTTGTGGGATTATGATATATTGGTTTCCTGCCAAACGGAGTTATGTGGGTTGGCCATTGATTAAGTTGCATAACATGCTTCTCAAAGATGAAATACTTTACTAAATAGCGCGGCCTGGAAAGTCAAACCTATCACTTTAAAAGGAATTTAGTGAAGTATGTGGTTGTTGAACCAGCAACCTGTACCTCCCGCACAATTTTTCAAATGATAAATCCTGGAGGCTTTTATCCATGTCTTGAGTCTTGTCTAGTTTTGAATAGTAACCCATTTCACTATCTTATTGCCCTTCTCTTTCTCTTCCACTAATTTAGGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAGGTAAATTATGAGCTTGTTGGGTCTTGTATTACTTTTAGTTCCCTTGTGGATGTTCTTAAGCAAAATTGTTTAAACCCTTGATGGTAATTGTCTCAGGTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAGGTATGATGTGTATCAAGTATTACAGTGAAAAACTCAGCTAATTAGATGCGCCATTTTACTTATACTGTGTATTGCATGCATTATGCTATAACAAAGTTTTCCATGTCCAGTTATGAGTTTCTTCAATAATTTCAGTACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAA</genome_strand>
        <mrna_strand>AATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAA....................................................................GTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA.................................................................................................................................................................................................................................................................................................................................................GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG................................................................................................GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG.......................................................................................................................................TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG538-F" ref_strand="+" ref_description="TG538-F">
      <seq>tttctgggccaagtgcagagagtactggaggacctgatggctacacaggaaagtttttatcaagcttgttgggatataattgctaacgatatgacaaaaatggaaaaatccttcttttggggacacaagttacctatacattacatgtacaaatctgattttaattcgcaagaagaaagaaatcaccactttttcagatatgagtcctattagcctgagagattttaccagcaaggttatttcaagaatcattcatgagagaatagtgaagttgctaccaacaataatctcgccgcaacaatcaggctttgttaaaggcagaagtattgtggagaacatattattagtccaagaaatagttcatgatatcagaattagaggtaagccgaccaatgttgtactcaaactagacatggcaaaagcttatgatagagtatcatggcttttcttgactaaagttttaaggaagatgggttttggggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="+" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="132407" stop="133492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132707" g_stop="133192" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="+" ref_id="TG538-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="+"/>
        <rDNA rDNA_id="TG538-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132707" e_stop="133192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGGGCCAAGTGCAGAGAGTACTGGAGGACCTGATGGCTACACAGGAAAGTTTTTATCAAGCTTGTTGGGATATAATTGCTAACGATATGACAAAAATGGAAAAATCCTTCTTTTGGGGACACAAGTTACCTATACATTACATGTACAAATCTGATTTTAATTCGCAAGAAGAAAGAAATCACCACTTTTTCAGATATGAGTCCTATTAGCCTGAGAGATTTTACCAGCAAGGTTATTTCAAGAATCATTCATGAGAGAATAGTGAAGTTGCTACCAACAATAATCTCGCCGCAACAATCAGGCTTTGTTAAAGGCAGAAGTATTGTGGAGAACATATTATTAGTCCAAGAAATAGTTCATGATATCAGAATTAGAGGTAAGCCGACCAATGTTGTACTCAAACTAGACATGGCAAAAGCTTATGATAGAGTATCATGGCTTTTCTTGACTAAAGTTTTAAGGAAGATGGGTTTTGGGGAGAT</genome_strand>
        <mrna_strand>TTTCTGGGCCAAGTGCAGAGAGTACTGGAGGACCTGATGGCTACACAGGAAAGTTTTTATCAAGCTTGTTGGGATATAATTGCTAACGATATGACAAAAATGGAAAAATCCTTCTTTTGGGGACACAAGTTACCTATACATTACATGTACAAATCTGATTTTAATTCGCAAGAAGAAAGAAATCACCACTTTTTCAGATATGAGTCCTATTAGCCTGAGAGATTTTACCAGCAAGGTTATTTCAAGAATCATTCATGAGAGAATAGTGAAGTTGCTACCAACAATAATCTCGCCGCAACAATCAGGCTTTGTTAAAGGCAGAAGTATTGTGGAGAACATATTATTAGTCCAAGAAATAGTTCATGATATCAGAATTAGAGGTAAGCCGACCAATGTTGTACTCAAACTAGACATGGCAAAAGCTTATGATAGAGTATCATGGCTTTTCTTGACTAAAGTTTTAAGGAAGATGGGTTTTGGGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG538-R" ref_strand="+" ref_description="TG538-R">
      <seq>actgtacttaataaagcatccactaatgcactccgtttatatggcatattcttcctccttgtctgaatgaacatgatcaaagtatgcattatctgatagaacaacttattattggcactcttccgtcccctatgtcttagtgtggttctcctcttccataattcccacactatgatagaggggacaacttgaaatatatacataacttgctgatgtacatttatctctcccacaatttgttatcacttgagataagagaagattctcaatattagtacatactggtctacaaaaatgtttccataccatttgggctgtagctctggataactattccgcagccaatatgaataatgttggtgataaagggtctctttgtttcagtcctctggtagacttaaagaacccctttggttgtccattaactagtatagagtaccagttgttggaaatgattttgtacaccatgtctatcagtatctccccaaaacccatcttcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0190L02-mtCaB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0190L02.2" temp_strand="-" temp_description="C05HBa0190L02.2  AC232703.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0190L02 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="133971" stop="132868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133671" g_stop="133168" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0190L02.2" gen_strand="-" ref_id="TG538-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0190L02.2" gen_strand="-"/>
        <rDNA rDNA_id="TG538-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133671" e_stop="133168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTACTTAAATAAAGCATCCACTAATGCACTCCGTTTATATGGCATATTCTTCCTCCTTGTCTGAATGAACATGATCAAAGTATGCATTATCTGATAGAACAACTTATTATTGGCACTCTTCCGTCCCCTATGTCTTAGTGTGGTTCTCCTCTTCCATAATTCCCACACTATGATAGAGGGGACAACTTGAAATATATACATAACTTGCTGATGTACATTTATCTCTCCCACAATTTGTTATCACTTGAGATAAGAGAAGATTCTCAATATTAGTACATACTGGTCTACAAAAATGTTTCCATACCATTTGGGCTGTAGCTCTGGATAACTATTCCGCAGCCAATATGAATAATGTTGGTGATAAAGGGTCTCTTTGTTTCAGTCCTCTGGTAGACTTAAAGAACCCCTTTGGTTGTCCATTAACTAGTATAGAGTACCAGTTGTTGGAAATGATTTTGTACACCATGTCTATCAGTATCTCCCCAAAACCCATCTTCCTTA</genome_strand>
        <mrna_strand>ACTGTACTT-AATAAAGCATCCACTAATGCACTCCGTTTATATGGCATATTCTTCCTCCTTGTCTGAATGAACATGATCAAAGTATGCATTATCTGATAGAACAACTTATTATTGGCACTCTTCCGTCCCCTATGTCTTAGTGTGGTTCTCCTCTTCCATAATTCCCACACTATGATAGAGGGGACAACTTGAAATATATACATAACTTGCTGATGTACATTTATCTCTCCCACAATTTGTTATCACTTGAGATAAGAGAAGATTCTCAATATTAGTACATACTGGTCTACAAAAATGTTTCCATACCATTTGGGCTGTAGCTCTGGATAACTATTCCGCAGCCAATATGAATAATGTTGGTGATAAAGGGTCTCTTTGTTTCAGTCCTCTGGTAGACTTAAAGAACCCCTTTGGTTGTCCATTAACTAGTATAGAGTACCAGTTGTTGGAAATGATTTTGTACACCATGTCTATCAGTATCTCCCCAAAACCCATCTTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="24901" PGL_stop="31004"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24901" e_stop="25115"/>
            <exon e_start="25217" e_stop="25453"/>
            <exon e_start="25785" e_stop="25970"/>
            <exon e_start="26730" e_stop="26870"/>
            <exon e_start="27400" e_stop="27668"/>
            <exon e_start="30068" e_stop="30149"/>
            <exon e_start="30848" e_stop="31004"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.910" e_score="0.986"/>
          <exon-intron don_prob="0.473" acc_prob="0.989" e_score="0.966"/>
          <exon-intron don_prob="0.767" acc_prob="1.000" e_score="0.984"/>
          <exon-intron don_prob="0.993" acc_prob="0.983" e_score="0.965"/>
          <exon-intron don_prob="0.911" acc_prob="0.996" e_score="0.985"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="24901" e_stop="25115" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.910">
            <gDNA_intron_boundary i_start="25116" i_stop="25216" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="25217" e_stop="25453" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.473" acc_prob="0.989">
            <gDNA_intron_boundary i_start="25454" i_stop="25784" i_length="331"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="25785" e_stop="25970" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.767" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25971" i_stop="26729" i_length="759"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="26730" e_stop="26870" e_length="141"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.983">
            <gDNA_intron_boundary i_start="26871" i_stop="27399" i_length="529"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="27400" e_stop="27668" e_length="269"/>
          </exon>
          <intron i_serial="5" don_prob="0.911" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27669" i_stop="30067" i_length="2399"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30068" e_stop="30149" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30150" i_stop="30847" i_length="698"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="30848" e_stop="31004" e_length="157"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24901" stop="25115"/>
              <exon start="25217" stop="25453"/>
              <exon start="25785" stop="25970"/>
              <exon start="26730" stop="26870"/>
              <exon start="27400" stop="27668"/>
              <exon start="30068" stop="30149"/>
              <exon start="30848" stop="31004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At2g42490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAACTTTCGTATTGGTTTTACCCCCAGGGAGGGCCTGGTTATCTATTCTGTTGCGTATATTGATGGTAGCAGAGGCCGTAGACCTGTTGCTCATAGACTGAGCTTCATTGAAATGGTTGTGCCCTATGGGGATCCAAATGAGCCACATTACAGAAAAAATGCTTTTGATGCAGGGGAAGATGGGCTTGGTAAAAATGCACATTCCTTAAAGAAG : GGTTGTGATTGCTTAGGTTACATTAAATATTTCGATGCGCATTTTACAAATTTCACTGGCGGTGTTGAGACAATTGAAAATTGTGTCTGTTTACACGAGGAGGATCATGGAATCTTATGGAAGCATCAAGATTGGAGAACTGGTTTAGCTGAAGTACGACGCTCCAGACGGCTAACTGTGTCTTTCATCTGTACCGTGGCAAACTATGAATATGGATTTTACTGGCATTTTTATCAG : GATGGGAAGATCGAGGCTGAGGTCAAGCTGACTGGAATTCTCAGCTTAGGTGCTCTTCTACCAGGGGAAGTTCGAAAATATGGAACAACTATTGCACCTGGCTTGTATGCACCTGTACATCAGCACTTCTTTGTGGCTCGCATGGATATGGCTGTTGATTGCAAATCAGGGGAATCACATAATCAG : GTGGTTGAAGTAAACGCTAGAGTTGAACCACCAGGAGAAAATAATGTTCATAATAATGCATTTTATGCTGAAGAAAGATTGCTTAGAACTGAACTGGAAGCAATGCGTGATTGTAATCCTTTAACTGCACGCCATTGGATT : ATCCGGAACACAAGAACAGTCAATCGCACTGGGCAGTTAACTGGTTATAAGCTAGTACCAGGTTCAAATTGTCTGCCACTAGCTGGTTCAGAGGCAAAATTCTTGAGGAGAGCTGCCTTCTTAAAGCATAATCTTTGGGTCACCCCTTACTCTCGTGAAGAGATGTTTCCTGGAGGAGAGTTTCCAAATCAAAATCCCCGTGTTGGTGAAGGTTTGGCTACTTGGGTTCAGCAGAATCGATCCCTAGAAGAAACGCAAATAGTTCTTTG : GTATATTTTTGGACTTATACATGTTCCACGGCTAGAAGACTGGCCTGTCATGCCAGTGGAACACATTGGTTTTATGCTCCAG : CCTCATGGGTTCTTCAATTGCTCCCCAGCTGTTGATGTTCCTCCCAGCATGTCTGACTCAGATATTAAGGAAAACGGGACAGTGGCAAAGTCTTGCCACAACGATGGTGTAATGTCTAAGCTTTGATAGATTCAATCTAGTTTTGTCTTCAGGGATC</gDNA_template>
            <first_frame> G  T  F  V  L  V  L  P  P  G  R  A  W  L  S  I  L  L  R  I  L  M  V  A  E  A  V  D  L  L  L  I  D  *  A  S  L  K  W  L  C  P  M  G  I  Q  M  S  H  I  T  E  K  M  L  L  M  Q  G  K  M  G  L  V  K  M  H  I  P  *  R  R :   V  V  I  A  *  V  T  L  N  I  S  M  R  I  L  Q  I  S  L  A  V  L  R  Q  L  K  I  V  S  V  Y  T  R  R  I  M  E  S  Y  G  S  I  K  I  G  E  L  V  *  L  K  Y  D  A  P  D  G  *  L  C  L  S  S  V  P  W  Q  T  M  N  M  D  F  T  G  I  F  I  R :   M  G  R  S  R  L  R  S  S  *  L  E  F  S  A  *  V  L  F  Y  Q  G  K  F  E  N  M  E  Q  L  L  H  L  A  C  M  H  L  Y  I  S  T  S  L  W  L  A  W  I  W  L  L  I  A  N  Q  G  N  H  I  I  R :   W  L  K  *  T  L  E  L  N  H  Q  E  K  I  M  F  I  I  M  H  F  M  L  K  K  D  C  L  E  L  N  W  K  Q  C  V  I  V  I  L  *  L  H  A  I  G  L :   S  G  T  Q  E  Q  S  I  A  L  G  S  *  L  V  I  S  *  Y  Q  V  Q  I  V  C  H  *  L  V  Q  R  Q  N  S  *  G  E  L  P  S  *  S  I  I  F  G  S  P  L  T  L  V  K  R  C  F  L  E  E  S  F  Q  I  K  I  P  V  L  V  K  V  W  L  L  G  F  S  R  I  D  P  *  K  K  R  K  *  F  F   : G  I  F  L  D  L  Y  M  F  H  G  *  K  T  G  L  S  C  Q  W  N  T  L  V  L  C  S  S :   L  M  G  S  S  I  A  P  Q  L  L  M  F  L  P  A  C  L  T  Q  I  L  R  K  T  G  Q  W  Q  S  L  A  T  T  M  V  *  C  L  S  F  D  R  F  N  L  V  L  S  S  G  I </first_frame>
            <second_frame>  E  L  S  Y  W  F  Y  P  Q  G  G  P  G  Y  L  F  C  C  V  Y  *  W  *  Q  R  P  *  T  C  C  S  *  T  E  L  H  *  N  G  C  A  L  W  G  S  K  *  A  T  L  Q  K  K  C  F  *  C  R  G  R  W  A  W  *  K  C  T  F  L  K  E   : G  L  *  L  L  R  L  H  *  I  F  R  C  A  F  Y  K  F  H  W  R  C  *  D  N  *  K  L  C  L  F  T  R  G  G  S  W  N  L  M  E  A  S  R  L  E  N  W  F  S  *  S  T  T  L  Q  T  A  N  C  V  F  H  L  Y  R  G  K  L  *  I  W  I  L  L  A  F  L  S   : G  W  E  D  R  G  *  G  Q  A  D  W  N  S  Q  L  R  C  S  S  T  R  G  S  S  K  I  W  N  N  Y  C  T  W  L  V  C  T  C  T  S  A  L  L  C  G  S  H  G  Y  G  C  *  L  Q  I  R  G  I  T  *  S   : G  G  *  S  K  R  *  S  *  T  T  R  R  K  *  C  S  *  *  C  I  L  C  *  R  K  I  A  *  N  *  T  G  S  N  A  *  L  *  S  F  N  C  T  P  L  D   : Y  P  E  H  K  N  S  Q  S  H  W  A  V  N  W  L  *  A  S  T  R  F  K  L  S  A  T  S  W  F  R  G  K  I  L  E  E  S  C  L  L  K  A  *  S  L  G  H  P  L  L  S  *  R  D  V  S  W  R  R  V  S  K  S  K  S  P  C  W  *  R  F  G  Y  L  G  S  A  E  S  I  P  R  R  N  A  N  S  S  L  :  V  Y  F  W  T  Y  T  C  S  T  A  R  R  L  A  C  H  A  S  G  T  H  W  F  Y  A  P   : A  S  W  V  L  Q  L  L  P  S  C  *  C  S  S  Q  H  V  *  L  R  Y  *  G  K  R  D  S  G  K  V  L  P  Q  R  W  C  N  V  *  A  L  I  D  S  I  *  F  C  L  Q  G   </second_frame>
            <third_frame>   N  F  R  I  G  F  T  P  R  E  G  L  V  I  Y  S  V  A  Y  I  D  G  S  R  G  R  R  P  V  A  H  R  L  S  F  I  E  M  V  V  P  Y  G  D  P  N  E  P  H  Y  R  K  N  A  F  D  A  G  E  D  G  L  G  K  N  A  H  S  L  K  K  :  G  C  D  C  L  G  Y  I  K  Y  F  D  A  H  F  T  N  F  T  G  G  V  E  T  I  E  N  C  V  C  L  H  E  E  D  H  G  I  L  W  K  H  Q  D  W  R  T  G  L  A  E  V  R  R  S  R  R  L  T  V  S  F  I  C  T  V  A  N  Y  E  Y  G  F  Y  W  H  F  Y  Q  :  D  G  K  I  E  A  E  V  K  L  T  G  I  L  S  L  G  A  L  L  P  G  E  V  R  K  Y  G  T  T  I  A  P  G  L  Y  A  P  V  H  Q  H  F  F  V  A  R  M  D  M  A  V  D  C  K  S  G  E  S  H  N  Q  :  V  V  E  V  N  A  R  V  E  P  P  G  E  N  N  V  H  N  N  A  F  Y  A  E  E  R  L  L  R  T  E  L  E  A  M  R  D  C  N  P  L  T  A  R  H  W  I  :  I  R  N  T  R  T  V  N  R  T  G  Q  L  T  G  Y  K  L  V  P  G  S  N  C  L  P  L  A  G  S  E  A  K  F  L  R  R  A  A  F  L  K  H  N  L  W  V  T  P  Y  S  R  E  E  M  F  P  G  G  E  F  P  N  Q  N  P  R  V  G  E  G  L  A  T  W  V  Q  Q  N  R  S  L  E  E  T  Q  I  V  L  W :   Y  I  F  G  L  I  H  V  P  R  L  E  D  W  P  V  M  P  V  E  H  I  G  F  M  L  Q  :  P  H  G  F  F  N  C  S  P  A  V  D  V  P  P  S  M  S  D  S  D  I  K  E  N  G  T  V  A  K  S  C  H  N  D  G  V  M  S  K  L  *  *  I  Q  S  S  F  V  F  R  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24903" stop="25115"/>
                    <exon start="25217" stop="25453"/>
                    <exon start="25785" stop="25970"/>
                    <exon start="26730" stop="26870"/>
                    <exon start="27400" stop="27668"/>
                    <exon start="30068" stop="30149"/>
                    <exon start="30848" stop="30973"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFRIGFTPREGLVIYSVAYIDGSRGRRPVAHRLSFIEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGILSLGALLPGEVRKYGTTIAPGLYAPVHQHFFVARMDMAVDCKSGESHNQVVEVNARVEPPGENNVHNNAFYAEERLLRTELEAMRDCNPLTARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNLWVTPYSREEMFPGGEFPNQNPRVGEGLATWVQQNRSLEETQIVLWYIFGLIHVPRLEDWPVMPVEHIGFMLQPHGFFNCSPAVDVPPSMSDSDIKENGTVAKSCHNDGVMSKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="83360" PGL_stop="79809"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83360" e_stop="83203"/>
            <exon e_start="81427" e_stop="81227"/>
            <exon e_start="80685" e_stop="80620"/>
            <exon e_start="80532" e_stop="80415"/>
            <exon e_start="79842" e_stop="79809"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.897" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="83360" e_stop="83203" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83202" i_stop="81428" i_length="1775"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="81427" e_stop="81227" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="81226" i_stop="80686" i_length="541"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80685" e_stop="80620" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="80619" i_stop="80533" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="80532" e_stop="80415" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.897">
            <gDNA_intron_boundary i_start="80414" i_stop="79843" i_length="572"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79842" e_stop="79809" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83360" stop="83203"/>
              <exon start="81427" stop="81227"/>
              <exon start="80685" stop="80620"/>
              <exon start="80532" stop="80415"/>
              <exon start="79842" stop="79809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTTTCATCTTGGAATTTATGTCTTCACACTTGGCCACATATACAAATAATAATATACTATAATTATCCCCTTTTCCTTTACACCCCAATAAAAAATAAATTGAACTTCTCACTCACCATTCACCAAACTGACTCACAACACTTGCCTCCTAACTGT : GTTTTGAGCCGAGGTGCTACATTGCCAGTACGGGCATCACTTTGCTTGGAATTTTAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTAGACTATGAGAATCTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAG : ATCATCTTCACCAATGTTGGTAACCCCCATGCCCTTGGGCAGAAACCACTGACATTTCCACGCCAG : GTCATTGCTCTCTGTCAAGCTCCATTTTTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGAGCCAAACAGTTTCTTGGGATGACTTCTGGAGGTCTAG : GTGCTTATAGTGACTCCCGAGGCATTCCTGGTGT</gDNA_template>
            <first_frame> W  F  H  L  G  I  Y  V  F  T  L  G  H  I  Y  K  *  *  Y  T  I  I  I  P  F  S  F  T  P  Q  *  K  I  N  *  T  S  H  S  P  F  T  K  L  T  H  N  T  C  L  L  T  V :   F  *  A  E  V  L  H  C  Q  Y  G  H  H  F  A  W  N  F  N  *  E  E  N  F  N  S  L  *  C  L  L  R  H  *  T  M  R  I  *  T  K  M  S  R  S  A  N  M  L  S  E  V  S  C  T  F  E  L  L  S  F  R  R  K  A  K  R :   S  S  S  P  M  L  V  T  P  M  P  L  G  R  N  H  *  H  F  H  A  R :   S  L  L  S  V  K  L  H  F  Y  W  M  I  R  M  W  D  S  Y  S  L  L  M  Q  L  Q  E  P  N  S  F  L  G  *  L  L  E  V  *  :  V  L  I  V  T  P  E  A  F  L  V  </first_frame>
            <second_frame>  G  F  I  L  E  F  M  S  S  H  L  A  T  Y  T  N  N  N  I  L  *  L  S  P  F  P  L  H  P  N  K  K  *  I  E  L  L  T  H  H  S  P  N  *  L  T  T  L  A  S  *  L   : C  F  E  P  R  C  Y  I  A  S  T  G  I  T  L  L  G  I  L  T  K  R  K  I  L  I  P  Y  N  V  F  *  G  I  R  L  *  E  S  E  R  K  C  Q  E  V  P  I  C  C  Q  R  *  A  V  P  S  S  F  *  A  S  E  G  R  Q  K   : D  H  L  H  Q  C  W  *  P  P  C  P  W  A  E  T  T  D  I  S  T  P   : G  H  C  S  L  S  S  S  I  F  T  G  *  S  E  C  G  T  H  I  P  C  *  C  N  C  K  S  Q  T  V  S  W  D  D  F  W  R  S  R :   C  L  *  *  L  P  R  H  S  W  C </second_frame>
            <third_frame>   V  S  S  W  N  L  C  L  H  T  W  P  H  I  Q  I  I  I  Y  Y  N  Y  P  L  F  L  Y  T  P  I  K  N  K  L  N  F  S  L  T  I  H  Q  T  D  S  Q  H  L  P  P  N  C  :  V  L  S  R  G  A  T  L  P  V  R  A  S  L  C  L  E  F  *  L  R  G  K  F  *  F  L  I  M  S  S  K  A  L  D  Y  E  N  L  N  E  N  V  K  K  C  Q  Y  A  V  R  G  E  L  Y  L  R  A  S  E  L  Q  K  E  G  K  K  :  I  I  F  T  N  V  G  N  P  H  A  L  G  Q  K  P  L  T  F  P  R  Q  :  V  I  A  L  C  Q  A  P  F  L  L  D  D  P  N  V  G  L  I  F  P  A  D  A  I  A  R  A  K  Q  F  L  G  M  T  S  G  G  L   : G  A  Y  S  D  S  R  G  I  P  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81352" stop="81227"/>
                    <exon start="80685" stop="80620"/>
                    <exon start="80532" stop="80415"/>
                    <exon start="79842" stop="79811"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLIMSSKALDYENLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVIALCQAPFLLDDPNVGLIFPADAIARAKQFLGMTSGGLGAYSDSRGIPG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83358" stop="83203"/>
                    <exon start="81427" stop="81371"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSSWNLCLHTWPHIQIIIYYNYPLFLYTPIKNKLNFSLTIHQTDSQHLPPNCVLSRGATLPVRASLCLEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="96866" PGL_stop="102673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96866" e_stop="96986"/>
            <exon e_start="97055" e_stop="97158"/>
            <exon e_start="101705" e_stop="101812"/>
            <exon e_start="102150" e_stop="102246"/>
            <exon e_start="102343" e_stop="102440"/>
            <exon e_start="102576" e_stop="102673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.381" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.468" acc_prob="0.924" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96866" e_stop="96986" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.381" acc_prob="0.972">
            <gDNA_intron_boundary i_start="96987" i_stop="97054" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97055" e_stop="97158" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97159" i_stop="101704" i_length="4546"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101705" e_stop="101812" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.935">
            <gDNA_intron_boundary i_start="101813" i_stop="102149" i_length="337"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102150" e_stop="102246" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="102247" i_stop="102342" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102343" e_stop="102440" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.468" acc_prob="0.924">
            <gDNA_intron_boundary i_start="102441" i_stop="102575" i_length="135"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102576" e_stop="102673" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96866" stop="96986"/>
              <exon start="97055" stop="97158"/>
              <exon start="101705" stop="101812"/>
              <exon start="102150" stop="102246"/>
              <exon start="102343" stop="102440"/>
              <exon start="102576" stop="102673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCTTAGTGAGTTCATAAAAACTGATGCATATAGGATGGAGGTTACACAAAGGCCTCCAATGGCAGTTACAAATGCTGTGTCCTGGCGTAGTGAAGGGATAAATTACAAGAAGAATGAA : GTGTTTTTGGATGTTGTGGAGAGTGTTAATATACTTGTAAACAGCAATGGGCAAATAGTGAGATCAGATGTTGTTGGTGCACTGAAGATGAGGGCATACTTGAG : TGGCATGCCTGAGTGTAAGCTTGGTCTTAATGATAGAATGTTGCTGGAAGCACAAGGGCGAACTACCAAGGGGAAGGCCATTGATCTTGATGATATCAAGTTTCATCA : GTGTGTTCGCTTGGCCCGATTTGAAAATGATCGCACTATATCATTTATACCGCCAGATGGAGCCTTTGATCTTATGACCTACAGACTTGGTACTCAG : GTAAAGCCTCTCATATGGGTGGAAGCTCAAGTGGAAAGGCATTCTAGGAGCCGTATGGAAATTGTGGTTAAAGCACGGAGCCAGTTCAAGGAACGAAG : TACTGCAACTAATGTTGAAATTGAGTTACCTGTGGCAACGGATGCTACAAATCCAAATGTCCGAACATCAATGGGATCATCTACTTATGCACCTGAAA</gDNA_template>
            <first_frame> N  S  *  *  V  H  K  N  *  C  I  *  D  G  G  Y  T  K  A  S  N  G  S  Y  K  C  C  V  L  A  *  *  R  D  K  L  Q  E  E  *   : S  V  F  G  C  C  G  E  C  *  Y  T  C  K  Q  Q  W  A  N  S  E  I  R  C  C  W  C  T  E  D  E  G  I  L  E  :  W  H  A  *  V  *  A  W  S  *  *  *  N  V  A  G  S  T  R  A  N  Y  Q  G  E  G  H  *  S  *  *  Y  Q  V  S  S  :  V  C  S  L  G  P  I  *  K  *  S  H  Y  I  I  Y  T  A  R  W  S  L  *  S  Y  D  L  Q  T  W  Y  S   : G  K  A  S  H  M  G  G  S  S  S  G  K  A  F  *  E  P  Y  G  N  C  G  *  S  T  E  P  V  Q  G  T  K  :  Y  C  N  *  C  *  N  *  V  T  C  G  N  G  C  Y  K  S  K  C  P  N  I  N  G  I  I  Y  L  C  T  *   </first_frame>
            <second_frame>  I  L  S  E  F  I  K  T  D  A  Y  R  M  E  V  T  Q  R  P  P  M  A  V  T  N  A  V  S  W  R  S  E  G  I  N  Y  K  K  N  E  :  V  F  L  D  V  V  E  S  V  N  I  L  V  N  S  N  G  Q  I  V  R  S  D  V  V  G  A  L  K  M  R  A  Y  L  S :   G  M  P  E  C  K  L  G  L  N  D  R  M  L  L  E  A  Q  G  R  T  T  K  G  K  A  I  D  L  D  D  I  K  F  H  Q :   C  V  R  L  A  R  F  E  N  D  R  T  I  S  F  I  P  P  D  G  A  F  D  L  M  T  Y  R  L  G  T  Q  :  V  K  P  L  I  W  V  E  A  Q  V  E  R  H  S  R  S  R  M  E  I  V  V  K  A  R  S  Q  F  K  E  R  S :   T  A  T  N  V  E  I  E  L  P  V  A  T  D  A  T  N  P  N  V  R  T  S  M  G  S  S  T  Y  A  P  E  </second_frame>
            <third_frame>   F  L  V  S  S  *  K  L  M  H  I  G  W  R  L  H  K  G  L  Q  W  Q  L  Q  M  L  C  P  G  V  V  K  G  *  I  T  R  R  M  K :   C  F  W  M  L  W  R  V  L  I  Y  L  *  T  A  M  G  K  *  *  D  Q  M  L  L  V  H  *  R  *  G  H  T  *   : V  A  C  L  S  V  S  L  V  L  M  I  E  C  C  W  K  H  K  G  E  L  P  R  G  R  P  L  I  L  M  I  S  S  F  I   : S  V  F  A  W  P  D  L  K  M  I  A  L  Y  H  L  Y  R  Q  M  E  P  L  I  L  *  P  T  D  L  V  L  R :   *  S  L  S  Y  G  W  K  L  K  W  K  G  I  L  G  A  V  W  K  L  W  L  K  H  G  A  S  S  R  N  E   : V  L  Q  L  M  L  K  L  S  Y  L  W  Q  R  M  L  Q  I  Q  M  S  E  H  Q  W  D  H  L  L  M  H  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96867" stop="96986"/>
                    <exon start="97055" stop="97158"/>
                    <exon start="101705" stop="101812"/>
                    <exon start="102150" stop="102246"/>
                    <exon start="102343" stop="102440"/>
                    <exon start="102576" stop="102672"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGINYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRAYLSGMPECKLGLNDRMLLEAQGRTTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLGTQVKPLIWVEAQVERHSRSRMEIVVKARSQFKERSTATNVEIELPVATDATNPNVRTSMGSSTYAPE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="132707" PGL_stop="133192"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132707" e_stop="133192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132707" e_stop="133192" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132707" stop="133192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG538-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTGGGCCAAGTGCAGAGAGTACTGGAGGACCTGATGGCTACACAGGAAAGTTTTTATCAAGCTTGTTGGGATATAATTGCTAACGATATGACAAAAATGGAAAAATCCTTCTTTTGGGGACACAAGTTACCTATACATTACATGTACAAATCTGATTTTAATTCGCAAGAAGAAAGAAATCACCACTTTTTCAGATATGAGTCCTATTAGCCTGAGAGATTTTACCAGCAAGGTTATTTCAAGAATCATTCATGAGAGAATAGTGAAGTTGCTACCAACAATAATCTCGCCGCAACAATCAGGCTTTGTTAAAGGCAGAAGTATTGTGGAGAACATATTATTAGTCCAAGAAATAGTTCATGATATCAGAATTAGAGGTAAGCCGACCAATGTTGTACTCAAACTAGACATGGCAAAAGCTTATGATAGAGTATCATGGCTTTTCTTGACTAAAGTTTTAAGGAAGATGGGTTTTGGGGAGAT</gDNA_template>
            <first_frame> F  L  G  Q  V  Q  R  V  L  E  D  L  M  A  T  Q  E  S  F  Y  Q  A  C  W  D  I  I  A  N  D  M  T  K  M  E  K  S  F  F  W  G  H  K  L  P  I  H  Y  M  Y  K  S  D  F  N  S  Q  E  E  R  N  H  H  F  F  R  Y  E  S  Y  *  P  E  R  F  Y  Q  Q  G  Y  F  K  N  H  S  *  E  N  S  E  V  A  T  N  N  N  L  A  A  T  I  R  L  C  *  R  Q  K  Y  C  G  E  H  I  I  S  P  R  N  S  S  *  Y  Q  N  *  R  *  A  D  Q  C  C  T  Q  T  R  H  G  K  S  L  *  *  S  I  M  A  F  L  D  *  S  F  K  E  D  G  F  W  G  D </first_frame>
            <second_frame>  F  W  A  K  C  R  E  Y  W  R  T  *  W  L  H  R  K  V  F  I  K  L  V  G  I  *  L  L  T  I  *  Q  K  W  K  N  P  S  F  G  D  T  S  Y  L  Y  I  T  C  T  N  L  I  L  I  R  K  K  K  E  I  T  T  F  S  D  M  S  P  I  S  L  R  D  F  T  S  K  V  I  S  R  I  I  H  E  R  I  V  K  L  L  P  T  I  I  S  P  Q  Q  S  G  F  V  K  G  R  S  I  V  E  N  I  L  L  V  Q  E  I  V  H  D  I  R  I  R  G  K  P  T  N  V  V  L  K  L  D  M  A  K  A  Y  D  R  V  S  W  L  F  L  T  K  V  L  R  K  M  G  F  G  E   </second_frame>
            <third_frame>   S  G  P  S  A  E  S  T  G  G  P  D  G  Y  T  G  K  F  L  S  S  L  L  G  Y  N  C  *  R  Y  D  K  N  G  K  I  L  L  L  G  T  Q  V  T  Y  T  L  H  V  Q  I  *  F  *  F  A  R  R  K  K  S  P  L  F  Q  I  *  V  L  L  A  *  E  I  L  P  A  R  L  F  Q  E  S  F  M  R  E  *  *  S  C  Y  Q  Q  *  S  R  R  N  N  Q  A  L  L  K  A  E  V  L  W  R  T  Y  Y  *  S  K  K  *  F  M  I  S  E  L  E  V  S  R  P  M  L  Y  S  N  *  T  W  Q  K  L  M  I  E  Y  H  G  F  S  *  L  K  F  *  G  R  W  V  L  G  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132801" stop="133190"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKWKNPSFGDTSYLYITCTNLILIRKKKEITTFSDMSPISLRDFTSKVISRIIHERIVKLLPTIISPQQSGFVKGRSIVENILLVQEIVHDIRIRGKPTNVVLKLDMAKAYDRVSWLFLTKVLRKMGFGE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="133671" PGL_stop="133168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133671" e_stop="133168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="133671" e_stop="133168" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133671" stop="133168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG538-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGTACTTAAATAAAGCATCCACTAATGCACTCCGTTTATATGGCATATTCTTCCTCCTTGTCTGAATGAACATGATCAAAGTATGCATTATCTGATAGAACAACTTATTATTGGCACTCTTCCGTCCCCTATGTCTTAGTGTGGTTCTCCTCTTCCATAATTCCCACACTATGATAGAGGGGACAACTTGAAATATATACATAACTTGCTGATGTACATTTATCTCTCCCACAATTTGTTATCACTTGAGATAAGAGAAGATTCTCAATATTAGTACATACTGGTCTACAAAAATGTTTCCATACCATTTGGGCTGTAGCTCTGGATAACTATTCCGCAGCCAATATGAATAATGTTGGTGATAAAGGGTCTCTTTGTTTCAGTCCTCTGGTAGACTTAAAGAACCCCTTTGGTTGTCCATTAACTAGTATAGAGTACCAGTTGTTGGAAATGATTTTGTACACCATGTCTATCAGTATCTCCCCAAAACCCATCTTCCTTA</gDNA_template>
            <first_frame> T  V  L  K  *  S  I  H  *  C  T  P  F  I  W  H  I  L  P  P  C  L  N  E  H  D  Q  S  M  H  Y  L  I  E  Q  L  I  I  G  T  L  P  S  P  M  S  *  C  G  S  P  L  P  *  F  P  H  Y  D  R  G  D  N  L  K  Y  I  H  N  L  L  M  Y  I  Y  L  S  H  N  L  L  S  L  E  I  R  E  D  S  Q  Y  *  Y  I  L  V  Y  K  N  V  S  I  P  F  G  L  *  L  W  I  T  I  P  Q  P  I  *  I  M  L  V  I  K  G  L  F  V  S  V  L  W  *  T  *  R  T  P  L  V  V  H  *  L  V  *  S  T  S  C  W  K  *  F  C  T  P  C  L  S  V  S  P  Q  N  P  S  S  L </first_frame>
            <second_frame>  L  Y  L  N  K  A  S  T  N  A  L  R  L  Y  G  I  F  F  L  L  V  *  M  N  M  I  K  V  C  I  I  *  *  N  N  L  L  L  A  L  F  R  P  L  C  L  S  V  V  L  L  F  H  N  S  H  T  M  I  E  G  T  T  *  N  I  Y  I  T  C  *  C  T  F  I  S  P  T  I  C  Y  H  L  R  *  E  K  I  L  N  I  S  T  Y  W  S  T  K  M  F  P  Y  H  L  G  C  S  S  G  *  L  F  R  S  Q  Y  E  *  C  W  *  *  R  V  S  L  F  Q  S  S  G  R  L  K  E  P  L  W  L  S  I  N  *  Y  R  V  P  V  V  G  N  D  F  V  H  H  V  Y  Q  Y  L  P  K  T  H  L  P   </second_frame>
            <third_frame>   C  T  *  I  K  H  P  L  M  H  S  V  Y  M  A  Y  S  S  S  L  S  E  *  T  *  S  K  Y  A  L  S  D  R  T  T  Y  Y  W  H  S  S  V  P  Y  V  L  V  W  F  S  S  S  I  I  P  T  L  *  *  R  G  Q  L  E  I  Y  T  *  L  A  D  V  H  L  S  L  P  Q  F  V  I  T  *  D  K  R  R  F  S  I  L  V  H  T  G  L  Q  K  C  F  H  T  I  W  A  V  A  L  D  N  Y  S  A  A  N  M  N  N  V  G  D  K  G  S  L  C  F  S  P  L  V  D  L  K  N  P  F  G  C  P  L  T  S  I  E  Y  Q  L  L  E  M  I  L  Y  T  M  S  I  S  I  S  P  K  P  I  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0190L02.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133420" stop="133169"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKRRFSILVHTGLQKCFHTIWAVALDNYSAANMNNVGDKGSLCFSPLVDLKNPFGCPLTSIEYQLLEMILYTMSISISPKPIFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 110 chains have been computed
$ 
$ memory statistics:
$ 10664 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2132 bytes was the average size of a spliced alignment
$ 10712 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2142 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 110 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-12 19:26:33
-->
