<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:20:32"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0168M18-1UOhc/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0168M18-1UOhc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0168M18-1UOhc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330757" ref_strand="+" ref_description="SGN-U330757        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ctctattcccttttcttaagacaccccatttacttttattttaatgagttaaagtgaagaagaaatgcaaaattcgtgtaaaaaatggaatcttgatacaccccatttgcttttctttgtttttaatcagttaaggtgaagaaaaaaatgcaaaattagtgtaaaaaatggaatcttgatacaccccatttgcttttctttgttttttaatgagttaaagtgaagaaaaaaggcaaaattagtgtaaaaaatggaatcttaatacaccccatttgcttttctttgttttttaatgagttaaagtgaagaaaaaaggcaaaattagtgtaaaaaatggaatcttaatacaccccatttgcttttctttgttttttaatgagttaaagtgaagaaaaaaggcaaaattagtgtaaaaaatggaatcttgatacaccccatttgcttttctttgttttttaatgagttaaaagtgaagaaaaaaggcaaaattagtgtaaaaaatggtattttgaaacaccccatttgcttttcttttgagtttaatgagttaaactaaagaaaatagggaaaaagggttcaaaaagatagaatcttgaaactaattttagtcttttttcctattttaatatgagtttgtagttttgtggttatatactagtgtttccttttgtagaacttttgaaaatatgactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0168M18-1UOhc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0168M18.1" temp_strand="+" temp_description="C05HBa0168M18.1  AC209178.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0168M18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="997" stop="2290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1297" g_stop="1990" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0168M18.1" gen_strand="+" ref_id="SGN-U330757" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0168M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1297" e_stop="1990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATTCCCTTTTCTTAAGACACCCCATTTACTTTTATTTTAATGAGTTAAAGTGAAGAAGAAATGCAAAATTCGTGTAAAAAATGGAATCTTGATACACCCCATTTGCTTTTCTTTGTTTTTAATCAGTTAAGGTGAAGAAAAAAATGCAAAATTAGTGTAAAAAATGGAATCTTGATACACCCCATTTGCTTTTCTTTGTTTTTTAATGAGTTAAAGTGAAGAAAAAAGGCAAAATTAGTGTAAAAAATGGAATCTTAATACACCCCATTTGCTTTTCTTTGTTTTTTAATGAGTTAAAGTGAAGAAAAAAGGCAAAATTAGTGTAAAAAATGGAATCTTAATACACCCCATTTGCTTTTCTTTGTTTTTTAATGAGTTAAAGTGAAGAAAAAAGGCAAAATTAGTGTAAAAAATGGAATCTTGATACACCCCATTTGCTTTTCTTTGTTTTTTAATGAGTTAAAAGTGAAGAAAAAAGGCAAAATTAGTGTAAAAAATGGTATTTTGAAACACCCCATTTGCTTTTCTTTTGAGTTTAATGAGTTAAACTAAAGAAAATAGGGAAAAAGGGTTCAAAAAGATAGAATCTTGAAACTAATTTTAGTCTTTTTTCCTATTTTAATATGAGTTTGTAGTTTTGTGTTTATATACTAGTGTTTCCTTTTGTAGAACTTTTGAAAATATGACTAA</genome_strand>
        <mrna_strand>CTCTATTCCCTTTTCTTAAGACACCCCATTTACTTTTATTTTAATGAGTTAAAGTGAAGAAGAAATGCAAAATTCGTGTAAAAAATGGAATCTTGATACACCCCATTTGCTTTTCTTTGTTTTTAATCAGTTAAGGTGAAGAAAAAAATGCAAAATTAGTGTAAAAAATGGAATCTTGATACACCCCATTTGCTTTTCTTTGTTTTTTAATGAGTTAAAGTGAAGAAAAAAGGCAAAATTAGTGTAAAAAATGGAATCTTAATACACCCCATTTGCTTTTCTTTGTTTTTTAATGAGTTAAAGTGAAGAAAAAAGGCAAAATTAGTGTAAAAAATGGAATCTTAATACACCCCATTTGCTTTTCTTTGTTTTTTAATGAGTTAAAGTGAAGAAAAAAGGCAAAATTAGTGTAAAAAATGGAATCTTGATACACCCCATTTGCTTTTCTTTGTTTTTTAATGAGTTAAAAGTGAAGAAAAAAGGCAAAATTAGTGTAAAAAATGGTATTTTGAAACACCCCATTTGCTTTTCTTTTGAGTTTAATGAGTTAAACTAAAGAAAATAGGGAAAAAGGGTTCAAAAAGATAGAATCTTGAAACTAATTTTAGTCTTTTTTCCTATTTTAATATGAGTTTGTAGTTTTGTGGTTATATACTAGTGTTTCCTTTTGTAGAACTTTTGAAAATATGACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0168M18-1UOhc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323731" ref_strand="+" ref_description="SGN-U323731        Tomato 200607 #1 [6 ESTs aligned]">
      <seq>tcaagaatcagcaccaggagaagtttaatcttttgccagaggaaatcgattatctcgatgaggatgatgaggacgatgattgttatcctgaggaagagatgaggtttgtgagagatggaccaaggcagatggctattcttagacaacaagctgaagcgaataagaagaaagctatggcggctgctatggctaatgggaaaggtaacaacaacaatgttgctgctcatggcaagaaaactggccctagtccgaatatgccaatgaaggcaaatcccggaggcggtggcattgaccaaagagcaattcatgctatgaaaatgaacatgaatggtgctgcttctgctgctcaattaggtccaaatgtcaacctcaacgaggctgcgaaaattggaatggtgggaggaaacgacttaaactcaatgatgaatcttgctggttttcatgggaataacaacaatggaactactactactactactaacaataacaacaacgttgctgcattcttgaacgcgggtggatttcaaggtcatcaaaacaatgctataccgggatctttatccaccggtggtcatcatcatccttcctctgcctcgatgctaatgaacatgaacaacggaggccaacaacaacagtacaatccagcacaaatgctaatgaattttcaaaacaggcatgctatgcaacatcaacaacaacaacctcagatgatgtacaatcgttcaccattcgttcctccttccaccggttattactataacaataccaacaataactatggccaagtcccttacactacttatgctgatccttattactacacttctgctgctgctgctgctgctaatgctgatcaatctgccactaatactcatatgtttagtgatgagaatcctagtagttgtagtatcatgtgaaaagtctgtttttaagtgtgtattttgttgtgatgtgggaattgaagtaatggtctgaggatgaatgaggagtattttaggtcctcaatcttttttatatttaacatcacatgatgtttaatatgtattttctagctacttgctacaattctatatattgttgtataattctccttattttagtagtttatattataataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0168M18-1UOhc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0168M18.1" temp_strand="+" temp_description="C05HBa0168M18.1  AC209178.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0168M18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="2872" stop="4593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3172" g_stop="4300" g_length="1129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1129" r_length="1129" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0168M18.1" gen_strand="+" ref_id="SGN-U323731" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1129</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0168M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3172" e_stop="4300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAATCAGCACCAGGAGAAGTTTAATCTTTTGCCAGAGGAAATCGATTATCTCGATGAGGATGATGAGGACGATGATTGTTATCCTGAGGAAGAGATGAGGTTTGTGAGAGATGGACCAAGGCAGATGGCTATTCTTAGACAACAAGCTGAAGCGAATAAGAAGAAAGCTATGGCGGCTGCTATGGCTAATGGGAAAGGTAACAACAACAATGTTGCTGCTCATGGCAAGAAAACTGGCCCTAGTCCGAATATGCCAATGAAGGCAAATCCCGGAGGCGGTGGCATTGACCAAAGAGCAATTCATGCTATGAAAATGAACATGAATGGTGCTGCTTCTGCTGCTCAATTAGGTCCAAATGTCAACCTCAACGAGGCTGCGAAAATTGGAATGGTGGGAGGAAACGACTTAAACTCAATGATGAATCTTGCTGGTTTTCATGGGAATAACAACAATGGAACTACTACTACTACTACTAACAATAACAACAACGTTGCTGCATTCTTGAACGCGGGTGGATTTCAAGGTCATCAAAACAATGCTATACCGGGATCTTTATCCACCGGTGGTCATCATCATCCTTCCTCTGCCTCGATGCTAATGAACATGAACAACGGAGGCCAACAACAACAGTACAATCCAGCACAAATGCTAATGAATTTTCAAAACAGGCATGCTATGCAACATCAACAACAACAACCTCAGATGATGTACAATCGTTCACCATTCGTTCCTCCTTCCACCGGTTATTACTATAACAATACCAACAATAACTATGGCCAAGTCCCTTACACTACTTATGCTGATCCTTATTACTACACTTCTGCTGCTGCTGCTGCTGCTAATGCTGATCAATCTGCCACTAATACTCATATGTTTAGTGATGAGAATCCTAGTAGTTGTAGTATCATGTGAAAAGTCTGTTTTTAAGTGTGTATTTTGTTGTGATGTGGGAATTGAAGTAATGGTCTGAGGATGAATGAGGAGTATTTTAGGTCCTCAATCTTTTTTATATTTAACATCACATGATGTTTAATATGTATTTTCTAGCTACTTGCTACAATTCTATATATTGTTGTATAATTCTCCTTATTTTAGTAGTTTATATTATAATTAACAATTATGTT</genome_strand>
        <mrna_strand>TCAAGAATCAGCACCAGGAGAAGTTTAATCTTTTGCCAGAGGAAATCGATTATCTCGATGAGGATGATGAGGACGATGATTGTTATCCTGAGGAAGAGATGAGGTTTGTGAGAGATGGACCAAGGCAGATGGCTATTCTTAGACAACAAGCTGAAGCGAATAAGAAGAAAGCTATGGCGGCTGCTATGGCTAATGGGAAAGGTAACAACAACAATGTTGCTGCTCATGGCAAGAAAACTGGCCCTAGTCCGAATATGCCAATGAAGGCAAATCCCGGAGGCGGTGGCATTGACCAAAGAGCAATTCATGCTATGAAAATGAACATGAATGGTGCTGCTTCTGCTGCTCAATTAGGTCCAAATGTCAACCTCAACGAGGCTGCGAAAATTGGAATGGTGGGAGGAAACGACTTAAACTCAATGATGAATCTTGCTGGTTTTCATGGGAATAACAACAATGGAACTACTACTACTACTACTAACAATAACAACAACGTTGCTGCATTCTTGAACGCGGGTGGATTTCAAGGTCATCAAAACAATGCTATACCGGGATCTTTATCCACCGGTGGTCATCATCATCCTTCCTCTGCCTCGATGCTAATGAACATGAACAACGGAGGCCAACAACAACAGTACAATCCAGCACAAATGCTAATGAATTTTCAAAACAGGCATGCTATGCAACATCAACAACAACAACCTCAGATGATGTACAATCGTTCACCATTCGTTCCTCCTTCCACCGGTTATTACTATAACAATACCAACAATAACTATGGCCAAGTCCCTTACACTACTTATGCTGATCCTTATTACTACACTTCTGCTGCTGCTGCTGCTGCTAATGCTGATCAATCTGCCACTAATACTCATATGTTTAGTGATGAGAATCCTAGTAGTTGTAGTATCATGTGAAAAGTCTGTTTTTAAGTGTGTATTTTGTTGTGATGTGGGAATTGAAGTAATGGTCTGAGGATGAATGAGGAGTATTTTAGGTCCTCAATCTTTTTTATATTTAACATCACATGATGTTTAATATGTATTTTCTAGCTACTTGCTACAATTCTATATATTGTTGTATAATTCTCCTTATTTTAGTAGTTTATATTATAATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0168M18-1UOhc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335078" ref_strand="+" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0168M18-1UOhc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0168M18.1" temp_strand="-" temp_description="C05HBa0168M18.1  AC209178.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0168M18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="10307" stop="9113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10007" g_stop="9909" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9908" i_stop="9832" i_length="77">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9831" g_stop="9413" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="515" r_length="416" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0168M18.1" gen_strand="-" ref_id="SGN-U335078" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0168M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10007" e_stop="9909"/>
          <exon e_start="9831" e_stop="9413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATTCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGAGTGCCACGTTCCGATACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGAAATAAAGATAATGAATTTTGAAAGATGTTAATATATTCAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAG.............................................................................GATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATAT--GGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0168M18-1UOhc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323943" ref_strand="+" ref_description="SGN-U323943        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | multi-copper oxidase type I family protein, similar to SP:P07788 Spore coat protein A {Bacillus subtilis}; contains Pfam profile PF00394: Multicopper oxidase | chr1:8147253-8149801 FORWARD | Aliases: F19G10.5, F19G10_5(evalue: 2e-133, score=472) genbank/nr: gi|26451035|dbj|BAC42623.1| unknown protein [Arabidopsis thaliana] gi|29028970|gb|AAO64864.1| At1g23010 [Arabidopsis thaliana](evalue: 2e-131, score=472)">
      <seq>ccaccccacccctttcttcttaaaacatcaagaacaagaaaaaggggtatttttggtgactttggtcctcaaatatatttaaaaaatgatgaaaaatatgctgtttttggtgtatttaattaatttcttgggatttttcatggtttcaacaatggcaaaagattctaatgatcaattaatgactctttcaaaattaaaaatgtttgttgatgaactccaagacatgccaagaatcaaaggttatgatgttatcaatggtgttcatgttcctaaatctctcaagattggcatgtacaaaaaaaaatggaaattccatagggatcttccagcaagtgaagtgtttgcatatggtacatcgcggcacacagcaacagtccctggtcctacgatcgaggccatttatggagttgactcttatattacgtggcgaaatcacctcccttcaaagcacatacttccatgggacccatcaattccaattgctacaactacttttaaaaaagggatcccaactgtggtgcacctacatggtggaattgatgaaccacaaagtgatggtcactctgaggcatggttcactaaacatttcaaacatcatggaccaaaatggactacaaaaacctatcattatcataactatcaacatcccggtacaatgtggtaccacgatcacgcgatggggttgactagggtcaacattctagctggtctcatgggtgcctatgttatacaacaaccaaatgttgaggggccactagggttgatatatggtgaagagtatgatcgtcctttggttgtatttgatcgtggttttaggtcagatggttcgatttacatgaactctaccggtaacaatccttctatacatcctcagtggcaacctgaatattttggtgatgcgattatagtcaatggaaaagcttggccttacatgaatgtgaaacgaaggaagtaccgattcaggatcatcaacgcaagtaacgccaggtttttcaaattcgtcttcactaataacatgtcgtttatacacgtggcgtctgattcagcttatcatgaaagtcccgtagagctccatgacctactattagctccatctgaaatagctgatgtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0168M18-1UOhc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0168M18.1" temp_strand="+" temp_description="C05HBa0168M18.1  AC209178.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0168M18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="11925" stop="15319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12225" g_stop="12531" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12532" i_stop="14212" i_length="1681">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14213" g_stop="15019" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="1114" r_length="807" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0168M18.1" gen_strand="+" ref_id="SGN-U323943" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1114</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0168M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12225" e_stop="12531"/>
          <exon e_start="14213" e_stop="15019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCCCACCCCTTTCTTCTTAAAACATCAAGAACAAGAAAAAGGGGTATTTTTGGTGACTTTGGTCCTCAAATATATTTAAAAAATGATGAAAAATATGCTGTTTTTGGTGTATTTAATTAATTTCTTGGGATTTTTCATGGTTTCAACAATGGCAAAAGATTCTAATGATCAATTAATGACTCTTTCAAAATTAAAAATGTTTGTTGATGAACTCCAAGACATGCCAAGAATCAAAGGTTATGATGTTATCAATGGTGTTCATGTTCCTAAATCTCTCAAGATTGGCATGTACAAAAAAAAATGGGTAAGTAACTCTTTACGAATTTTTATCGTTAAATTGTTCGTAGCTAATAATTTATTGGTTATAAACAGAATTAGAGATCGAAATTTGTTGTTTAGCTATAAAATTCGTTCGTCATTAATTTCTATTTGTCTTTGAGAATTATAAGTTGTGTGAGGATTTTATCATGAGTCAATTTTTTTTTTCCTCTAGTACATTTTAAATGAAGTATTGAGACTTTTTTTTTTAATAATTCAAATTAAGTAAAAAAAGTAATTAAAGTTCTAGAGAATTCTTTGGACCTTTTTCTTTTCTTTCATATTTTGTAAGAGAATAGTTTGGAAATAATACAAAATATAATAATAATAATTAATTATTTCTTAAGAAATGTATAAATATCCATCAACTCACTTAATAATATAGATATGAAAAAGTTTTGTATAAAATAAATTAACCAGAGTAATTTTCATTTTGTCTAATTTCATTTCAATTTAATATTTGATATTTATTTTGAAGATTTGTAATTTAAATTTCGTATTGGAAAGTGTTTATATGGAGCGTTATTAGCATAAACCACTCTAACTAAGATACGTATATCTGAATTTGAACTTTAATTTTTTTTCATATAAAATGATGAAATATTTACCGCTCCATAGCGTGTATTTTTTACTTTTTCATCCCTACGGTTTTTTTTTTCCAGCTTTTCAATGTGCCACTTTTTTTAACTTTTTTTCACTCACAAAAAACACAAAACATGTAGTGGTTCACGAGGTTCATAGTTTGTGATTTTAGCAATTTGAATTAATTATGAGTAACGAGAAAAAGTGATAATTCCTATAAACAAAAAATGATAAGGGGGAATATCTAAATTTTATTTTTATTAATTGTTAAATTGATATTTTTTAAGATATATCAGAAATAGTTTTTTATCGTAAAAATATTATGACATTCTACCCCATTTCAAACCATCCTTACGAGATTAAGTTGATAGAAGGGGGTGGAGGCGAGGTGAATTTGACAATCCACAATAATATTTGGTACATCTTAAATGTATTCGAACTTTAAAAATAAATTTCAAGAATCAAAATAAATATCGAAGAGTTGATAAAAGAAAAAAAAATGTATCTAAGTTTCAAGAAGTAAAAAAAAACTTTGAATTGTAATTAAGTAACCTCCAACTAGACATTTATCATTAACAAAATTGCTAATATTTAATAAGTGTGGAAAAAGTTACTCTCAACCTTAATTAGCACTTTAAAATAAATATTACAAGAACTAATTTCTTTGTTATTTTTAATGTCCAAAGTCCAGATCATATGTCCACTTTACATCACTTATTTTAAATTCTTAATCATTACTTTGGAATAAAATTTTATGTACTTGAGAATGGAGAAAAATATTATTTTCATAAAATACTCCTATTAGTAACTAATATATTAGAAAATTTCATTCATTCTTTATTGTTTAATCCAACTTTATGCTATACTTTAATTTATTATAGTAATTCAATCATCATCTATATATTTAAATCTAATTCTACCTTTTAACTCGATGTTTTTCTATTTGAGTCGTAAAAATAAAATCACGTTTAATAAGAAAATATTTTACTTTTTAATATTAAATATTTTAATGACCTGCGACGAGCAATAATTTTTTAATTGTCAGTATATAAAAATTAAACATTTTTTTTCCCACTTTTTTGTAGAAATTCCATAGGGATCTTCCAGCAAGTGAAGTGTTTGCATATGGTACATCGCGGCACACAGCAACAGTCCCTGGTCCTACGATCGAGGCCATTTATGGAGTTGACTCTTATATTACGTGGCGAAATCACCTCCCTTCAAAGCACATACTTCCATGGGACCCATCAATTCCAATTGCTACAACTACTTTTAAAAAAGGGATCCCAACTGTGGTGCACCTACATGGTGGAATTGATGAACCACAAAGTGATGGTCACTCTGAGGCATGGTTCACTAAACATTTCAAACATCATGGACCAAAATGGACTACAAAAACCTATCATTATCATAACTATCAACATCCCGGTACAATGTGGTACCACGATCACGCGATGGGGTTGACTAGGGTCAACATTCTAGCTGGTCTCATGGGTGCCTATGTTATACAACAACCAAATGTTGAGGGGCCACTAGGGTTGATATATGGTGAAGAGTATGATCGTCCTTTGGTTGTATTTGATCGTGGTTTTAGGTCAGATGGTTCGATTTACATGAACTCTACCGGTAACAATCCTTCTATACATCCTCAGTGGCAACCTGAATATTTTGGTGATGCGATTATAGTCAATGGAAAAGCTTGGCCTTACATGAATGTGAAACGAAGGAAGTACCGATTCAGGATCATCAACGCAAGTAACGCCAGGTTTTTCAAATTCGTCTTCACTAATAACATGTCGTTTATACACGTGGCGTCTGATTCAGCTTATCATGAAAGTCCGGTAGAGCTCCATGACCTACTATTAGCTCCATCTGAAATAGCTGATGTGATT</genome_strand>
        <mrna_strand>CCACCCCACCCCTTTCTTCTTAAAACATCAAGAACAAGAAAAAGGGGTATTTTTGGTGACTTTGGTCCTCAAATATATTTAAAAAATGATGAAAAATATGCTGTTTTTGGTGTATTTAATTAATTTCTTGGGATTTTTCATGGTTTCAACAATGGCAAAAGATTCTAATGATCAATTAATGACTCTTTCAAAATTAAAAATGTTTGTTGATGAACTCCAAGACATGCCAAGAATCAAAGGTTATGATGTTATCAATGGTGTTCATGTTCCTAAATCTCTCAAGATTGGCATGTACAAAAAAAAATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCCATAGGGATCTTCCAGCAAGTGAAGTGTTTGCATATGGTACATCGCGGCACACAGCAACAGTCCCTGGTCCTACGATCGAGGCCATTTATGGAGTTGACTCTTATATTACGTGGCGAAATCACCTCCCTTCAAAGCACATACTTCCATGGGACCCATCAATTCCAATTGCTACAACTACTTTTAAAAAAGGGATCCCAACTGTGGTGCACCTACATGGTGGAATTGATGAACCACAAAGTGATGGTCACTCTGAGGCATGGTTCACTAAACATTTCAAACATCATGGACCAAAATGGACTACAAAAACCTATCATTATCATAACTATCAACATCCCGGTACAATGTGGTACCACGATCACGCGATGGGGTTGACTAGGGTCAACATTCTAGCTGGTCTCATGGGTGCCTATGTTATACAACAACCAAATGTTGAGGGGCCACTAGGGTTGATATATGGTGAAGAGTATGATCGTCCTTTGGTTGTATTTGATCGTGGTTTTAGGTCAGATGGTTCGATTTACATGAACTCTACCGGTAACAATCCTTCTATACATCCTCAGTGGCAACCTGAATATTTTGGTGATGCGATTATAGTCAATGGAAAAGCTTGGCCTTACATGAATGTGAAACGAAGGAAGTACCGATTCAGGATCATCAACGCAAGTAACGCCAGGTTTTTCAAATTCGTCTTCACTAATAACATGTCGTTTATACACGTGGCGTCTGATTCAGCTTATCATGAAAGTCCCGTAGAGCTCCATGACCTACTATTAGCTCCATCTGAAATAGCTGATGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0168M18-1UOhc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341315" ref_strand="+" ref_description="SGN-U341315        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-24, score=117)">
      <seq>aaaaatggcaacagagaaattattctagtaaaattagctgcaacaatggctacattaggcctcagtcttttctcagcttcaatgggtcatcaatgtattctcccaaaatcccaatattcaccttctaagttcagaatttcatgttccagcttgttcttgcaaaataacaagtttaagaggaagtatacaagtgtgatgatagtgcctactggtgttggagcagctattggtggctatgctggtgatgctttgcctggtgctcgagcactttcctctggtggtgactggcttatttctcatcctaatcaatgctgtactggcccatgccaaatgcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0168M18-1UOhc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0168M18.1" temp_strand="+" temp_description="C05HBa0168M18.1  AC209178.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0168M18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20023" stop="23046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20323" g_stop="20493" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20494" i_stop="20613" i_length="120">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20614" g_stop="20748" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="306" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20749" i_stop="22713" i_length="1965">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.841" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22714" g_stop="22746" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="339" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0168M18.1" gen_strand="+" ref_id="SGN-U341315" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0168M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20323" e_stop="20493"/>
          <exon e_start="20614" e_stop="20748"/>
          <exon e_start="22714" e_stop="22746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAACAGAGAAATTATTCTAGTAAAATTAGCTGCAACAATGGCTACATTAGGCCTCAGTCTTTTCTCAGCTTCAATGGGTCATCAATGTATTCTCCCAAAATCCCAATATTCACCTTCTAAGTTCAGAATTTCATGTTCCAGCTTGTTCTTGCAAAATAACAAGGTACAGTTTTTACTGACCAAGACTTGATTTTTGTTTGTTGGGATTTCAAGAAATGAGATTTAGTGAGTATCCAATTGAGTTAATTGTTGTTTGTGTGTGTTTTGATGGTAATATGAGCAGTTTAAGAGGAAGTATACAAGTGTGATGATAGTGCCTACTGGTGTTGGAGCAGCTATTGGTGGCTATGCTGGTGATGCTTTGCCTGTTGCTCGAGCACTTTCCTCTGTTGTTGACTGCCTTATTTCTCATCCTAATGTATGAAACTTTTTTTTGTTTCCTTCCATTTGTCTTGATGAAATTTTACTTTGTGTATACCCTTATGTGTAGTATAATATTTAGACCTCTATAACGAAGAACTACTAGTCGAACCAGTTTGACGACAAAATACTAGTTAATTTCCTCCAATTTGTCTTAATTATATGTGGATAGAGTTATCTAGTACCTCTGTGTTGCTAAGAGGTAGTTTGTAATCTGTACAATAGTCGAGGTGTGCACGAGATGACTCGAATACCACCACCATTATTAGAAAAAATATAAGTAGGACTCTATTTGCCAAACAATGTGCTCACCCTTGATTATTTTTGAACTATTTGCTGTCCATTTGTTATAGCATTTGAATAAGGACTGATATGATAGAGTTTGATGAAGGAGCTAATCTATCCGTCTAAACTTACACATTGAATATATTTGAATCGTTAATGGGAGTTAAGATATGTTAAGGATTCAATTTAGGGATCCTTTAACATGAACTGAAAATTTGTTGACAGTTGCCTTGCGAATTTGAAATTCAGGTGGTAGCACTTCTTTTCAGAAAAATTCTTAGGCTTCAAATGTGGGTTGTCCTTAATATACTAGTGTTTTTATAGAGGAAATGATGCAGGATCACTATAGCTATCATTTTACTTCTCATGATATGTAATTACTTGTCAAATGTCACACCAGTGTAATTAGTGTAAATAATGTCTTGTTTGGCTGAACATTTAAGCAGACTGTCACTTAGCTATTTCTCTTAATTTTGTCTTCAACGAGGAATTTTTTCCATGCGTAGTATAGCGATGAAATTGAACTTCTAGTCAAGTACATGCCTCATAATCTAGCTATAGGCATCATACATTCATACTGGCAGATGCATTTCCACTGATATAAACGGCTAAAGCTCCAATACCTTGTGTGTCCAGCCCTTTTGAGACTAGATAAAAGAATATGTGGTAAGTAAAACTAGCTTGGATAAGGCAGTTTACCTCAACTGAAAGTAGCTTCAAGAGTTAGCTTCTGCCCTGCTTCAAAGGATATTGTGGGAATCGATGAATCCTATTCGACATTCTTACACTACTGACAAGATGTTTGACTACTAAATAAAAATTAAATTGGTTCATACTCTATCCAAAGGAACTGGACATTGGAAAATAGGAAACTAGTAAAAATTGTTTAATTAGCTTGAAATTTGAGTTCTCCATACTTCCTAGTTAGTACTTAGTAGTTCCTGATCAGTCTAATGGACTGAATAGCCTCTTATATTCATAATACTTTGAGCCTTGCTTTCCTCAATTAATTTAGTAGTCTCTGCGACTTTGATTTTACATTCTGAACGATTGTACTTCCTAGATGAGACTGGAACTTAAACTCTTGGTATATCACAAAAATTCTTGGAATGAAAAATACAATATGGAGAGACAAGTTAAGGAACCGAGCAATTTTATGGGATTAAATCCTCAACAATAGAAACTGAAAAATATTTCATGTACTTAAGGGCCAAAATAGCATCAGTTTTAGTAGCTTCTTTAAATTGTCAACAAAATAAGGAACCATCATTGCACGCAATGGTGTGGCTTGGCTAATGAAGTGATTTGAGAACCATGAAGTCTCAGGATAAATTCCAGCGGAGACAAAAACACTCGGTGATCTTTCCCATCTTGCCAACCGTTGTTTAATTGAGTCACCTGGTGCTTGTGGTGGTGGAGGTAGAAGGTACACTGTTAAATTAGTCAAGGTGTGTCCTAGCTGTCTCGGATACCATGGCTATCAAAAAGAAAAAAAATGAATCAACATTTGAACATCAGGTCAGGAGAAGGAAAATGATTGGAACTTTGTGGCAGTAATTGTGTGGATGAAGTAACTTAGACTGTCAATCTAGAGTAGGAAACATGGTCTGCAGTTTGGATTCACATGTATTTTCCTAGCTCTCTGTAAATTTATAAGTCATACAGGTTCTTAATGCAGCAATGCTGTACTGGCCCATGCCAAATGCACTCT</genome_strand>
        <mrna_strand>AAAAATGGCAACAGAGAAATTATTCTAGTAAAATTAGCTGCAACAATGGCTACATTAGGCCTCAGTCTTTTCTCAGCTTCAATGGGTCATCAATGTATTCTCCCAAAATCCCAATATTCACCTTCTAAGTTCAGAATTTCATGTTCCAGCTTGTTCTTGCAAAATAACAAG........................................................................................................................TTTAAGAGGAAGTATACAAGTGTGATGATAGTGCCTACTGGTGTTGGAGCAGCTATTGGTGGCTATGCTGGTGATGCTTTGCCTGGTGCTCGAGCACTTTCCTCTGGTGGTGACTGGCTTATTTCTCATCCTAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCTGTACTGGCCCATGCCAAATGCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1297" PGL_stop="1990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1297" e_stop="1990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="1297" e_stop="1990" e_length="694"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1297" stop="1990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTATTCCCTTTTCTTAAGACACCCCATTTACTTTTATTTTAATGAGTTAAAGTGAAGAAGAAATGCAAAATTCGTGTAAAAAATGGAATCTTGATACACCCCATTTGCTTTTCTTTGTTTTTAATCAGTTAAGGTGAAGAAAAAAATGCAAAATTAGTGTAAAAAATGGAATCTTGATACACCCCATTTGCTTTTCTTTGTTTTTTAATGAGTTAAAGTGAAGAAAAAAGGCAAAATTAGTGTAAAAAATGGAATCTTAATACACCCCATTTGCTTTTCTTTGTTTTTTAATGAGTTAAAGTGAAGAAAAAAGGCAAAATTAGTGTAAAAAATGGAATCTTAATACACCCCATTTGCTTTTCTTTGTTTTTTAATGAGTTAAAGTGAAGAAAAAAGGCAAAATTAGTGTAAAAAATGGAATCTTGATACACCCCATTTGCTTTTCTTTGTTTTTTAATGAGTTAAAAGTGAAGAAAAAAGGCAAAATTAGTGTAAAAAATGGTATTTTGAAACACCCCATTTGCTTTTCTTTTGAGTTTAATGAGTTAAACTAAAGAAAATAGGGAAAAAGGGTTCAAAAAGATAGAATCTTGAAACTAATTTTAGTCTTTTTTCCTATTTTAATATGAGTTTGTAGTTTTGTGTTTATATACTAGTGTTTCCTTTTGTAGAACTTTTGAAAATATGACTAA</gDNA_template>
            <first_frame> L  Y  S  L  F  L  R  H  P  I  Y  F  Y  F  N  E  L  K  *  R  R  N  A  K  F  V  *  K  M  E  S  *  Y  T  P  F  A  F  L  C  F  *  S  V  K  V  K  K  K  M  Q  N  *  C  K  K  W  N  L  D  T  P  H  L  L  F  F  V  F  *  *  V  K  V  K  K  K  G  K  I  S  V  K  N  G  I  L  I  H  P  I  C  F  S  L  F  F  N  E  L  K  *  R  K  K  A  K  L  V  *  K  M  E  S  *  Y  T  P  F  A  F  L  C  F  L  M  S  *  S  E  E  K  R  Q  N  *  C  K  K  W  N  L  D  T  P  H  L  L  F  F  V  F  *  *  V  K  S  E  E  K  R  Q  N  *  C  K  K  W  Y  F  E  T  P  H  L  L  F  F  *  V  *  *  V  K  L  K  K  I  G  K  K  G  S  K  R  *  N  L  E  T  N  F  S  L  F  S  Y  F  N  M  S  L  *  F  C  V  Y  I  L  V  F  P  F  V  E  L  L  K  I  *  L  </first_frame>
            <second_frame>  S  I  P  F  S  *  D  T  P  F  T  F  I  L  M  S  *  S  E  E  E  M  Q  N  S  C  K  K  W  N  L  D  T  P  H  L  L  F  F  V  F  N  Q  L  R  *  R  K  K  C  K  I  S  V  K  N  G  I  L  I  H  P  I  C  F  S  L  F  F  N  E  L  K  *  R  K  K  A  K  L  V  *  K  M  E  S  *  Y  T  P  F  A  F  L  C  F  L  M  S  *  S  E  E  K  R  Q  N  *  C  K  K  W  N  L  N  T  P  H  L  L  F  F  V  F  *  *  V  K  V  K  K  K  G  K  I  S  V  K  N  G  I  L  I  H  P  I  C  F  S  L  F  F  N  E  L  K  V  K  K  K  G  K  I  S  V  K  N  G  I  L  K  H  P  I  C  F  S  F  E  F  N  E  L  N  *  R  K  *  G  K  R  V  Q  K  D  R  I  L  K  L  I  L  V  F  F  P  I  L  I  *  V  C  S  F  V  F  I  Y  *  C  F  L  L  *  N  F  *  K  Y  D  * </second_frame>
            <third_frame>   L  F  P  F  L  K  T  P  H  L  L  L  F  *  *  V  K  V  K  K  K  C  K  I  R  V  K  N  G  I  L  I  H  P  I  C  F  S  L  F  L  I  S  *  G  E  E  K  N  A  K  L  V  *  K  M  E  S  *  Y  T  P  F  A  F  L  C  F  L  M  S  *  S  E  E  K  R  Q  N  *  C  K  K  W  N  L  N  T  P  H  L  L  F  F  V  F  *  *  V  K  V  K  K  K  G  K  I  S  V  K  N  G  I  L  I  H  P  I  C  F  S  L  F  F  N  E  L  K  *  R  K  K  A  K  L  V  *  K  M  E  S  *  Y  T  P  F  A  F  L  C  F  L  M  S  *  K  *  R  K  K  A  K  L  V  *  K  M  V  F  *  N  T  P  F  A  F  L  L  S  L  M  S  *  T  K  E  N  R  E  K  G  F  K  K  I  E  S  *  N  *  F  *  S  F  F  L  F  *  Y  E  F  V  V  L  C  L  Y  T  S  V  S  F  C  R  T  F  E  N  M  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0168M18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3172" PGL_stop="4300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3172" e_stop="4300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="3172" e_stop="4300" e_length="1129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3172" stop="4300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGAATCAGCACCAGGAGAAGTTTAATCTTTTGCCAGAGGAAATCGATTATCTCGATGAGGATGATGAGGACGATGATTGTTATCCTGAGGAAGAGATGAGGTTTGTGAGAGATGGACCAAGGCAGATGGCTATTCTTAGACAACAAGCTGAAGCGAATAAGAAGAAAGCTATGGCGGCTGCTATGGCTAATGGGAAAGGTAACAACAACAATGTTGCTGCTCATGGCAAGAAAACTGGCCCTAGTCCGAATATGCCAATGAAGGCAAATCCCGGAGGCGGTGGCATTGACCAAAGAGCAATTCATGCTATGAAAATGAACATGAATGGTGCTGCTTCTGCTGCTCAATTAGGTCCAAATGTCAACCTCAACGAGGCTGCGAAAATTGGAATGGTGGGAGGAAACGACTTAAACTCAATGATGAATCTTGCTGGTTTTCATGGGAATAACAACAATGGAACTACTACTACTACTACTAACAATAACAACAACGTTGCTGCATTCTTGAACGCGGGTGGATTTCAAGGTCATCAAAACAATGCTATACCGGGATCTTTATCCACCGGTGGTCATCATCATCCTTCCTCTGCCTCGATGCTAATGAACATGAACAACGGAGGCCAACAACAACAGTACAATCCAGCACAAATGCTAATGAATTTTCAAAACAGGCATGCTATGCAACATCAACAACAACAACCTCAGATGATGTACAATCGTTCACCATTCGTTCCTCCTTCCACCGGTTATTACTATAACAATACCAACAATAACTATGGCCAAGTCCCTTACACTACTTATGCTGATCCTTATTACTACACTTCTGCTGCTGCTGCTGCTGCTAATGCTGATCAATCTGCCACTAATACTCATATGTTTAGTGATGAGAATCCTAGTAGTTGTAGTATCATGTGAAAAGTCTGTTTTTAAGTGTGTATTTTGTTGTGATGTGGGAATTGAAGTAATGGTCTGAGGATGAATGAGGAGTATTTTAGGTCCTCAATCTTTTTTATATTTAACATCACATGATGTTTAATATGTATTTTCTAGCTACTTGCTACAATTCTATATATTGTTGTATAATTCTCCTTATTTTAGTAGTTTATATTATAATTAACAATTATGTT</gDNA_template>
            <first_frame> S  R  I  S  T  R  R  S  L  I  F  C  Q  R  K  S  I  I  S  M  R  M  M  R  T  M  I  V  I  L  R  K  R  *  G  L  *  E  M  D  Q  G  R  W  L  F  L  D  N  K  L  K  R  I  R  R  K  L  W  R  L  L  W  L  M  G  K  V  T  T  T  M  L  L  L  M  A  R  K  L  A  L  V  R  I  C  Q  *  R  Q  I  P  E  A  V  A  L  T  K  E  Q  F  M  L  *  K  *  T  *  M  V  L  L  L  L  L  N  *  V  Q  M  S  T  S  T  R  L  R  K  L  E  W  W  E  E  T  T  *  T  Q  *  *  I  L  L  V  F  M  G  I  T  T  M  E  L  L  L  L  L  L  T  I  T  T  T  L  L  H  S  *  T  R  V  D  F  K  V  I  K  T  M  L  Y  R  D  L  Y  P  P  V  V  I  I  I  L  P  L  P  R  C  *  *  T  *  T  T  E  A  N  N  N  S  T  I  Q  H  K  C  *  *  I  F  K  T  G  M  L  C  N  I  N  N  N  N  L  R  *  C  T  I  V  H  H  S  F  L  L  P  P  V  I  T  I  T  I  P  T  I  T  M  A  K  S  L  T  L  L  M  L  I  L  I  T  T  L  L  L  L  L  L  L  L  M  L  I  N  L  P  L  I  L  I  C  L  V  M  R  I  L  V  V  V  V  S  C  E  K  S  V  F  K  C  V  F  C  C  D  V  G  I  E  V  M  V  *  G  *  M  R  S  I  L  G  P  Q  S  F  L  Y  L  T  S  H  D  V  *  Y  V  F  S  S  Y  L  L  Q  F  Y  I  L  L  Y  N  S  P  Y  F  S  S  L  Y  Y  N  *  Q  L  C  </first_frame>
            <second_frame>  Q  E  S  A  P  G  E  V  *  S  F  A  R  G  N  R  L  S  R  *  G  *  *  G  R  *  L  L  S  *  G  R  D  E  V  C  E  R  W  T  K  A  D  G  Y  S  *  T  T  S  *  S  E  *  E  E  S  Y  G  G  C  Y  G  *  W  E  R  *  Q  Q  Q  C  C  C  S  W  Q  E  N  W  P  *  S  E  Y  A  N  E  G  K  S  R  R  R  W  H  *  P  K  S  N  S  C  Y  E  N  E  H  E  W  C  C  F  C  C  S  I  R  S  K  C  Q  P  Q  R  G  C  E  N  W  N  G  G  R  K  R  L  K  L  N  D  E  S  C  W  F  S  W  E  *  Q  Q  W  N  Y  Y  Y  Y  Y  *  Q  *  Q  Q  R  C  C  I  L  E  R  G  W  I  S  R  S  S  K  Q  C  Y  T  G  I  F  I  H  R  W  S  S  S  S  F  L  C  L  D  A  N  E  H  E  Q  R  R  P  T  T  T  V  Q  S  S  T  N  A  N  E  F  S  K  Q  A  C  Y  A  T  S  T  T  T  T  S  D  D  V  Q  S  F  T  I  R  S  S  F  H  R  L  L  L  *  Q  Y  Q  Q  *  L  W  P  S  P  L  H  Y  L  C  *  S  L  L  L  H  F  C  C  C  C  C  C  *  C  *  S  I  C  H  *  Y  S  Y  V  *  *  *  E  S  *  *  L  *  Y  H  V  K  S  L  F  L  S  V  Y  F  V  V  M  W  E  L  K  *  W  S  E  D  E  *  G  V  F  *  V  L  N  L  F  Y  I  *  H  H  M  M  F  N  M  Y  F  L  A  T  C  Y  N  S  I  Y  C  C  I  I  L  L  I  L  V  V  Y  I  I  I  N  N  Y  V </second_frame>
            <third_frame>   K  N  Q  H  Q  E  K  F  N  L  L  P  E  E  I  D  Y  L  D  E  D  D  E  D  D  D  C  Y  P  E  E  E  M  R  F  V  R  D  G  P  R  Q  M  A  I  L  R  Q  Q  A  E  A  N  K  K  K  A  M  A  A  A  M  A  N  G  K  G  N  N  N  N  V  A  A  H  G  K  K  T  G  P  S  P  N  M  P  M  K  A  N  P  G  G  G  G  I  D  Q  R  A  I  H  A  M  K  M  N  M  N  G  A  A  S  A  A  Q  L  G  P  N  V  N  L  N  E  A  A  K  I  G  M  V  G  G  N  D  L  N  S  M  M  N  L  A  G  F  H  G  N  N  N  N  G  T  T  T  T  T  T  N  N  N  N  N  V  A  A  F  L  N  A  G  G  F  Q  G  H  Q  N  N  A  I  P  G  S  L  S  T  G  G  H  H  H  P  S  S  A  S  M  L  M  N  M  N  N  G  G  Q  Q  Q  Q  Y  N  P  A  Q  M  L  M  N  F  Q  N  R  H  A  M  Q  H  Q  Q  Q  Q  P  Q  M  M  Y  N  R  S  P  F  V  P  P  S  T  G  Y  Y  Y  N  N  T  N  N  N  Y  G  Q  V  P  Y  T  T  Y  A  D  P  Y  Y  Y  T  S  A  A  A  A  A  A  N  A  D  Q  S  A  T  N  T  H  M  F  S  D  E  N  P  S  S  C  S  I  M  *  K  V  C  F  *  V  C  I  L  L  *  C  G  N  *  S  N  G  L  R  M  N  E  E  Y  F  R  S  S  I  F  F  I  F  N  I  T  *  C  L  I  C  I  F  *  L  L  A  T  I  L  Y  I  V  V  *  F  S  L  F  *  *  F  I  L  *  L  T  I  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0168M18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3174" stop="4088"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNQHQEKFNLLPEEIDYLDEDDEDDDCYPEEEMRFVRDGPRQMAILRQQAEANKKKAMAAAMANGKGNNNNVAAHGKKTGPSPNMPMKANPGGGGIDQRAIHAMKMNMNGAASAAQLGPNVNLNEAAKIGMVGGNDLNSMMNLAGFHGNNNNGTTTTTTNNNNNVAAFLNAGGFQGHQNNAIPGSLSTGGHHHPSSASMLMNMNNGGQQQQYNPAQMLMNFQNRHAMQHQQQQPQMMYNRSPFVPPSTGYYYNNTNNNYGQVPYTTYADPYYYTSAAAAAANADQSATNTHMFSDENPSSCSIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10007" PGL_stop="9413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10007" e_stop="9909"/>
            <exon e_start="9831" e_stop="9413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.960"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="10007" e_stop="9909" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9908" i_stop="9832" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.921">
            <gDNA_exon_boundary e_start="9831" e_stop="9413" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10007" stop="9909"/>
              <exon start="9831" stop="9413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTATTCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAG : GATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGAAATAAAGATAATGAATTTTGAAAGATGTTAATATATTCAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</gDNA_template>
            <first_frame> P  I  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  :  D  R  I  W  I  G  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  K  *  R  *  *  I  L  K  D  V  N  I  F  N  L  M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </first_frame>
            <second_frame>  L  F  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  M  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R :   I  E  Y  G  S  G  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  F  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  </second_frame>
            <third_frame>   Y  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  *  K  *  *  D  *  G  I  G  C  H  V  P  V  P   : G  *  N  M  D  R  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  F  E  R  C  *  Y  I  Q  S  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0168M18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="12225" PGL_stop="15019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12225" e_stop="12531"/>
            <exon e_start="14213" e_stop="15019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12225" e_stop="12531" e_length="307"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12532" i_stop="14212" i_length="1681"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="14213" e_stop="15019" e_length="807"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12225" stop="12531"/>
              <exon start="14213" stop="15019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACCCCACCCCTTTCTTCTTAAAACATCAAGAACAAGAAAAAGGGGTATTTTTGGTGACTTTGGTCCTCAAATATATTTAAAAAATGATGAAAAATATGCTGTTTTTGGTGTATTTAATTAATTTCTTGGGATTTTTCATGGTTTCAACAATGGCAAAAGATTCTAATGATCAATTAATGACTCTTTCAAAATTAAAAATGTTTGTTGATGAACTCCAAGACATGCCAAGAATCAAAGGTTATGATGTTATCAATGGTGTTCATGTTCCTAAATCTCTCAAGATTGGCATGTACAAAAAAAAATGG : AAATTCCATAGGGATCTTCCAGCAAGTGAAGTGTTTGCATATGGTACATCGCGGCACACAGCAACAGTCCCTGGTCCTACGATCGAGGCCATTTATGGAGTTGACTCTTATATTACGTGGCGAAATCACCTCCCTTCAAAGCACATACTTCCATGGGACCCATCAATTCCAATTGCTACAACTACTTTTAAAAAAGGGATCCCAACTGTGGTGCACCTACATGGTGGAATTGATGAACCACAAAGTGATGGTCACTCTGAGGCATGGTTCACTAAACATTTCAAACATCATGGACCAAAATGGACTACAAAAACCTATCATTATCATAACTATCAACATCCCGGTACAATGTGGTACCACGATCACGCGATGGGGTTGACTAGGGTCAACATTCTAGCTGGTCTCATGGGTGCCTATGTTATACAACAACCAAATGTTGAGGGGCCACTAGGGTTGATATATGGTGAAGAGTATGATCGTCCTTTGGTTGTATTTGATCGTGGTTTTAGGTCAGATGGTTCGATTTACATGAACTCTACCGGTAACAATCCTTCTATACATCCTCAGTGGCAACCTGAATATTTTGGTGATGCGATTATAGTCAATGGAAAAGCTTGGCCTTACATGAATGTGAAACGAAGGAAGTACCGATTCAGGATCATCAACGCAAGTAACGCCAGGTTTTTCAAATTCGTCTTCACTAATAACATGTCGTTTATACACGTGGCGTCTGATTCAGCTTATCATGAAAGTCCGGTAGAGCTCCATGACCTACTATTAGCTCCATCTGAAATAGCTGATGTGATT</gDNA_template>
            <first_frame> P  P  H  P  F  L  L  K  T  S  R  T  R  K  R  G  I  F  G  D  F  G  P  Q  I  Y  L  K  N  D  E  K  Y  A  V  F  G  V  F  N  *  F  L  G  I  F  H  G  F  N  N  G  K  R  F  *  *  S  I  N  D  S  F  K  I  K  N  V  C  *  *  T  P  R  H  A  K  N  Q  R  L  *  C  Y  Q  W  C  S  C  S  *  I  S  Q  D  W  H  V  Q  K  K  M   : E  I  P  *  G  S  S  S  K  *  S  V  C  I  W  Y  I  A  A  H  S  N  S  P  W  S  Y  D  R  G  H  L  W  S  *  L  L  Y  Y  V  A  K  S  P  P  F  K  A  H  T  S  M  G  P  I  N  S  N  C  Y  N  Y  F  *  K  R  D  P  N  C  G  A  P  T  W  W  N  *  *  T  T  K  *  W  S  L  *  G  M  V  H  *  T  F  Q  T  S  W  T  K  M  D  Y  K  N  L  S  L  S  *  L  S  T  S  R  Y  N  V  V  P  R  S  R  D  G  V  D  *  G  Q  H  S  S  W  S  H  G  C  L  C  Y  T  T  T  K  C  *  G  A  T  R  V  D  I  W  *  R  V  *  S  S  F  G  C  I  *  S  W  F  *  V  R  W  F  D  L  H  E  L  Y  R  *  Q  S  F  Y  T  S  S  V  A  T  *  I  F  W  *  C  D  Y  S  Q  W  K  S  L  A  L  H  E  C  E  T  K  E  V  P  I  Q  D  H  Q  R  K  *  R  Q  V  F  Q  I  R  L  H  *  *  H  V  V  Y  T  R  G  V  *  F  S  L  S  *  K  S  G  R  A  P  *  P  T  I  S  S  I  *  N  S  *  C  D  </first_frame>
            <second_frame>  H  P  T  P  F  F  L  K  H  Q  E  Q  E  K  G  V  F  L  V  T  L  V  L  K  Y  I  *  K  M  M  K  N  M  L  F  L  V  Y  L  I  N  F  L  G  F  F  M  V  S  T  M  A  K  D  S  N  D  Q  L  M  T  L  S  K  L  K  M  F  V  D  E  L  Q  D  M  P  R  I  K  G  Y  D  V  I  N  G  V  H  V  P  K  S  L  K  I  G  M  Y  K  K  K  W  :  K  F  H  R  D  L  P  A  S  E  V  F  A  Y  G  T  S  R  H  T  A  T  V  P  G  P  T  I  E  A  I  Y  G  V  D  S  Y  I  T  W  R  N  H  L  P  S  K  H  I  L  P  W  D  P  S  I  P  I  A  T  T  T  F  K  K  G  I  P  T  V  V  H  L  H  G  G  I  D  E  P  Q  S  D  G  H  S  E  A  W  F  T  K  H  F  K  H  H  G  P  K  W  T  T  K  T  Y  H  Y  H  N  Y  Q  H  P  G  T  M  W  Y  H  D  H  A  M  G  L  T  R  V  N  I  L  A  G  L  M  G  A  Y  V  I  Q  Q  P  N  V  E  G  P  L  G  L  I  Y  G  E  E  Y  D  R  P  L  V  V  F  D  R  G  F  R  S  D  G  S  I  Y  M  N  S  T  G  N  N  P  S  I  H  P  Q  W  Q  P  E  Y  F  G  D  A  I  I  V  N  G  K  A  W  P  Y  M  N  V  K  R  R  K  Y  R  F  R  I  I  N  A  S  N  A  R  F  F  K  F  V  F  T  N  N  M  S  F  I  H  V  A  S  D  S  A  Y  H  E  S  P  V  E  L  H  D  L  L  L  A  P  S  E  I  A  D  V  I </second_frame>
            <third_frame>   T  P  P  L  S  S  *  N  I  K  N  K  K  K  G  Y  F  W  *  L  W  S  S  N  I  F  K  K  *  *  K  I  C  C  F  W  C  I  *  L  I  S  W  D  F  S  W  F  Q  Q  W  Q  K  I  L  M  I  N  *  *  L  F  Q  N  *  K  C  L  L  M  N  S  K  T  C  Q  E  S  K  V  M  M  L  S  M  V  F  M  F  L  N  L  S  R  L  A  C  T  K  K  N  G :   N  S  I  G  I  F  Q  Q  V  K  C  L  H  M  V  H  R  G  T  Q  Q  Q  S  L  V  L  R  S  R  P  F  M  E  L  T  L  I  L  R  G  E  I  T  S  L  Q  S  T  Y  F  H  G  T  H  Q  F  Q  L  L  Q  L  L  L  K  K  G  S  Q  L  W  C  T  Y  M  V  E  L  M  N  H  K  V  M  V  T  L  R  H  G  S  L  N  I  S  N  I  M  D  Q  N  G  L  Q  K  P  I  I  I  I  T  I  N  I  P  V  Q  C  G  T  T  I  T  R  W  G  *  L  G  S  T  F  *  L  V  S  W  V  P  M  L  Y  N  N  Q  M  L  R  G  H  *  G  *  Y  M  V  K  S  M  I  V  L  W  L  Y  L  I  V  V  L  G  Q  M  V  R  F  T  *  T  L  P  V  T  I  L  L  Y  I  L  S  G  N  L  N  I  L  V  M  R  L  *  S  M  E  K  L  G  L  T  *  M  *  N  E  G  S  T  D  S  G  S  S  T  Q  V  T  P  G  F  S  N  S  S  S  L  I  T  C  R  L  Y  T  W  R  L  I  Q  L  I  M  K  V  R  *  S  S  M  T  Y  Y  *  L  H  L  K  *  L  M  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0168M18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12307" stop="12531"/>
                    <exon start="14213" stop="15019"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMMKNMLFLVYLINFLGFFMVSTMAKDSNDQLMTLSKLKMFVDELQDMPRIKGYDVINGVHVPKSLKIGMYKKKWKFHRDLPASEVFAYGTSRHTATVPGPTIEAIYGVDSYITWRNHLPSKHILPWDPSIPIATTTFKKGIPTVVHLHGGIDEPQSDGHSEAWFTKHFKHHGPKWTTKTYHYHNYQHPGTMWYHDHAMGLTRVNILAGLMGAYVIQQPNVEGPLGLIYGEEYDRPLVVFDRGFRSDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPYMNVKRRKYRFRIINASNARFFKFVFTNNMSFIHVASDSAYHESPVELHDLLLAPSEIADVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="20323" PGL_stop="22746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20323" e_stop="20493"/>
            <exon e_start="20614" e_stop="20748"/>
            <exon e_start="22714" e_stop="22746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.841" e_score="0.970"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20323" e_stop="20493" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.982">
            <gDNA_intron_boundary i_start="20494" i_stop="20613" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="20614" e_stop="20748" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.841">
            <gDNA_intron_boundary i_start="20749" i_stop="22713" i_length="1965"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22714" e_stop="22746" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20323" stop="20493"/>
              <exon start="20614" stop="20748"/>
              <exon start="22714" stop="22746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATGGCAACAGAGAAATTATTCTAGTAAAATTAGCTGCAACAATGGCTACATTAGGCCTCAGTCTTTTCTCAGCTTCAATGGGTCATCAATGTATTCTCCCAAAATCCCAATATTCACCTTCTAAGTTCAGAATTTCATGTTCCAGCTTGTTCTTGCAAAATAACAAG : TTTAAGAGGAAGTATACAAGTGTGATGATAGTGCCTACTGGTGTTGGAGCAGCTATTGGTGGCTATGCTGGTGATGCTTTGCCTGTTGCTCGAGCACTTTCCTCTGTTGTTGACTGCCTTATTTCTCATCCTAAT : CAATGCTGTACTGGCCCATGCCAAATGCACTCT</gDNA_template>
            <first_frame> K  N  G  N  R  E  I  I  L  V  K  L  A  A  T  M  A  T  L  G  L  S  L  F  S  A  S  M  G  H  Q  C  I  L  P  K  S  Q  Y  S  P  S  K  F  R  I  S  C  S  S  L  F  L  Q  N  N  K  :  F  K  R  K  Y  T  S  V  M  I  V  P  T  G  V  G  A  A  I  G  G  Y  A  G  D  A  L  P  V  A  R  A  L  S  S  V  V  D  C  L  I  S  H  P  N  :  Q  C  C  T  G  P  C  Q  M  H  S </first_frame>
            <second_frame>  K  M  A  T  E  K  L  F  *  *  N  *  L  Q  Q  W  L  H  *  A  S  V  F  S  Q  L  Q  W  V  I  N  V  F  S  Q  N  P  N  I  H  L  L  S  S  E  F  H  V  P  A  C  S  C  K  I  T  S :   L  R  G  S  I  Q  V  *  *  *  C  L  L  V  L  E  Q  L  L  V  A  M  L  V  M  L  C  L  L  L  E  H  F  P  L  L  L  T  A  L  F  L  I  L  I :   N  A  V  L  A  H  A  K  C  T   </second_frame>
            <third_frame>   K  W  Q  Q  R  N  Y  S  S  K  I  S  C  N  N  G  Y  I  R  P  Q  S  F  L  S  F  N  G  S  S  M  Y  S  P  K  I  P  I  F  T  F  *  V  Q  N  F  M  F  Q  L  V  L  A  K  *  Q   : V  *  E  E  V  Y  K  C  D  D  S  A  Y  W  C  W  S  S  Y  W  W  L  C  W  *  C  F  A  C  C  S  S  T  F  L  C  C  *  L  P  Y  F  S  S  *   : S  M  L  Y  W  P  M  P  N  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0168M18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20323" stop="20493"/>
                    <exon start="20614" stop="20748"/>
                    <exon start="22714" stop="22746"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNGNREIILVKLAATMATLGLSLFSASMGHQCILPKSQYSPSKFRISCSSLFLQNNKFKRKYTSVMIVPTGVGAAIGGYAGDALPVARALSSVVDCLISHPNQCCTGPCQMHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 16 chains have been computed
$ 
$ memory statistics:
$ 11176 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2235 bytes was the average size of a spliced alignment
$ 10360 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2072 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 24 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:20:46
-->
